Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09061.t1 | XP_003629763.2 | 94.6 | 259 | 3 | 1 | 1 | 248 | 1 | 259 | 1.80E-127 | 465.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09061.t1 | Q96452 | 85.3 | 259 | 26 | 2 | 1 | 248 | 1 | 258 | 1.5e-114 | 413.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09061.t1 | G7LIR4 | 94.6 | 259 | 3 | 1 | 1 | 248 | 1 | 259 | 1.3e-127 | 465.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04918 | MS.gene09061 | 0.824541 | 7.63E-54 | -1.69E-46 |
| MS.gene04919 | MS.gene09061 | 0.808116 | 3.63E-50 | -1.69E-46 |
| MS.gene04920 | MS.gene09061 | 0.834627 | 2.69E-56 | -1.69E-46 |
| MS.gene049283 | MS.gene09061 | 0.856694 | 2.71E-62 | -1.69E-46 |
| MS.gene049499 | MS.gene09061 | 0.810666 | 1.03E-50 | -1.69E-46 |
| MS.gene049653 | MS.gene09061 | 0.80423 | 2.39E-49 | -1.69E-46 |
| MS.gene049680 | MS.gene09061 | 0.862466 | 4.97E-64 | -1.69E-46 |
| MS.gene049983 | MS.gene09061 | 0.829348 | 5.41E-55 | -1.69E-46 |
| MS.gene05029 | MS.gene09061 | 0.834122 | 3.60E-56 | -1.69E-46 |
| MS.gene050646 | MS.gene09061 | 0.809313 | 2.01E-50 | -1.69E-46 |
| MS.gene050689 | MS.gene09061 | 0.816694 | 4.85E-52 | -1.69E-46 |
| MS.gene050752 | MS.gene09061 | 0.826536 | 2.57E-54 | -1.69E-46 |
| MS.gene050945 | MS.gene09061 | 0.840293 | 9.49E-58 | -1.69E-46 |
| MS.gene050955 | MS.gene09061 | 0.831117 | 2.00E-55 | -1.69E-46 |
| MS.gene051003 | MS.gene09061 | 0.858661 | 7.07E-63 | -1.69E-46 |
| MS.gene051234 | MS.gene09061 | 0.815076 | 1.11E-51 | -1.69E-46 |
| MS.gene051343 | MS.gene09061 | 0.840931 | 6.46E-58 | -1.69E-46 |
| MS.gene051597 | MS.gene09061 | 0.834216 | 3.41E-56 | -1.69E-46 |
| MS.gene051699 | MS.gene09061 | 0.835735 | 1.41E-56 | -1.69E-46 |
| MS.gene051975 | MS.gene09061 | 0.830383 | 3.03E-55 | -1.69E-46 |
| MS.gene052072 | MS.gene09061 | 0.828229 | 1.01E-54 | -1.69E-46 |
| MS.gene052108 | MS.gene09061 | 0.806937 | 6.46E-50 | -1.69E-46 |
| MS.gene052533 | MS.gene09061 | 0.841354 | 5.00E-58 | -1.69E-46 |
| MS.gene052793 | MS.gene09061 | 0.810967 | 8.86E-51 | -1.69E-46 |
| MS.gene052954 | MS.gene09061 | 0.828533 | 8.53E-55 | -1.69E-46 |
| MS.gene053006 | MS.gene09061 | 0.82287 | 1.88E-53 | -1.69E-46 |
| MS.gene053058 | MS.gene09061 | 0.827919 | 1.20E-54 | -1.69E-46 |
| MS.gene053228 | MS.gene09061 | 0.801663 | 8.10E-49 | -1.69E-46 |
| MS.gene053879 | MS.gene09061 | 0.875598 | 2.72E-68 | -1.69E-46 |
| MS.gene053931 | MS.gene09061 | 0.825328 | 4.98E-54 | -1.69E-46 |
| MS.gene053963 | MS.gene09061 | 0.814011 | 1.91E-51 | -1.69E-46 |
| MS.gene054004 | MS.gene09061 | 0.85247 | 4.52E-61 | -1.69E-46 |
| MS.gene054403 | MS.gene09061 | 0.829928 | 3.91E-55 | -1.69E-46 |
| MS.gene054413 | MS.gene09061 | 0.824034 | 1.00E-53 | -1.69E-46 |
| MS.gene05469 | MS.gene09061 | 0.801783 | 7.65E-49 | -1.69E-46 |
| MS.gene054892 | MS.gene09061 | 0.810104 | 1.36E-50 | -1.69E-46 |
| MS.gene054893 | MS.gene09061 | 0.818321 | 2.08E-52 | -1.69E-46 |
| MS.gene054957 | MS.gene09061 | 0.833458 | 5.27E-56 | -1.69E-46 |
| MS.gene055150 | MS.gene09061 | 0.862274 | 5.69E-64 | -1.69E-46 |
| MS.gene055513 | MS.gene09061 | 0.806557 | 7.76E-50 | -1.69E-46 |
| MS.gene055841 | MS.gene09061 | 0.823609 | 1.26E-53 | -1.69E-46 |
| MS.gene056071 | MS.gene09061 | 0.853733 | 1.97E-61 | -1.69E-46 |
| MS.gene056699 | MS.gene09061 | 0.844764 | 6.18E-59 | -1.69E-46 |
| MS.gene056787 | MS.gene09061 | 0.800889 | 1.17E-48 | -1.69E-46 |
| MS.gene056986 | MS.gene09061 | 0.83807 | 3.58E-57 | -1.69E-46 |
| MS.gene057034 | MS.gene09061 | 0.801829 | 7.48E-49 | -1.69E-46 |
| MS.gene057102 | MS.gene09061 | 0.84146 | 4.69E-58 | -1.69E-46 |
| MS.gene057208 | MS.gene09061 | 0.844439 | 7.55E-59 | -1.69E-46 |
| MS.gene057392 | MS.gene09061 | 0.846725 | 1.81E-59 | -1.69E-46 |
| MS.gene057622 | MS.gene09061 | 0.8434 | 1.43E-58 | -1.69E-46 |
| MS.gene05781 | MS.gene09061 | 0.81027 | 1.25E-50 | -1.69E-46 |
| MS.gene057999 | MS.gene09061 | 0.859381 | 4.30E-63 | -1.69E-46 |
| MS.gene058008 | MS.gene09061 | 0.836263 | 1.04E-56 | -1.69E-46 |
| MS.gene058009 | MS.gene09061 | 0.81526 | 1.01E-51 | -1.69E-46 |
| MS.gene058095 | MS.gene09061 | 0.813916 | 2.01E-51 | -1.69E-46 |
| MS.gene058159 | MS.gene09061 | 0.82001 | 8.60E-53 | -1.69E-46 |
| MS.gene058592 | MS.gene09061 | 0.838287 | 3.15E-57 | -1.69E-46 |
| MS.gene058781 | MS.gene09061 | 0.832273 | 1.04E-55 | -1.69E-46 |
| MS.gene058783 | MS.gene09061 | 0.818337 | 2.07E-52 | -1.69E-46 |
| MS.gene05878 | MS.gene09061 | 0.819337 | 1.22E-52 | -1.69E-46 |
| MS.gene059146 | MS.gene09061 | 0.883771 | 3.38E-71 | -1.69E-46 |
| MS.gene05952 | MS.gene09061 | 0.848733 | 5.08E-60 | -1.69E-46 |
| MS.gene05985 | MS.gene09061 | -0.851573 | 8.13E-61 | -1.69E-46 |
| MS.gene059901 | MS.gene09061 | -0.840356 | 9.13E-58 | -1.69E-46 |
| MS.gene06011 | MS.gene09061 | 0.8136 | 2.36E-51 | -1.69E-46 |
| MS.gene060244 | MS.gene09061 | 0.846928 | 1.60E-59 | -1.69E-46 |
| MS.gene060763 | MS.gene09061 | 0.818239 | 2.17E-52 | -1.69E-46 |
| MS.gene060933 | MS.gene09061 | 0.808856 | 2.52E-50 | -1.69E-46 |
| MS.gene060935 | MS.gene09061 | 0.869464 | 3.04E-66 | -1.69E-46 |
| MS.gene060937 | MS.gene09061 | 0.871136 | 8.60E-67 | -1.69E-46 |
| MS.gene061100 | MS.gene09061 | 0.802526 | 5.38E-49 | -1.69E-46 |
| MS.gene061243 | MS.gene09061 | 0.817781 | 2.76E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09061.t1 | MTR_8g086270 | 94.595 | 259 | 3 | 1 | 1 | 248 | 1 | 259 | 1.48e-179 | 493 |
| MS.gene09061.t1 | MTR_2g091225 | 80.078 | 256 | 40 | 1 | 1 | 245 | 1 | 256 | 2.33e-155 | 432 |
| MS.gene09061.t1 | MTR_2g015980 | 80.159 | 252 | 39 | 2 | 8 | 248 | 6 | 257 | 1.23e-147 | 412 |
| MS.gene09061.t1 | MTR_2g076960 | 77.165 | 254 | 46 | 2 | 2 | 244 | 3 | 255 | 2.39e-143 | 402 |
| MS.gene09061.t1 | MTR_2g091225 | 78.448 | 232 | 39 | 1 | 25 | 245 | 2 | 233 | 1.26e-137 | 386 |
| MS.gene09061.t1 | MTR_4g083060 | 76.305 | 249 | 48 | 1 | 1 | 238 | 1 | 249 | 1.17e-136 | 386 |
| MS.gene09061.t1 | MTR_5g044160 | 75.102 | 245 | 50 | 1 | 1 | 234 | 1 | 245 | 3.58e-134 | 379 |
| MS.gene09061.t1 | MTR_5g064580 | 69.136 | 243 | 62 | 2 | 7 | 236 | 8 | 250 | 3.30e-118 | 338 |
| MS.gene09061.t1 | MTR_3g099380 | 68.952 | 248 | 64 | 3 | 2 | 236 | 3 | 250 | 2.98e-117 | 336 |
| MS.gene09061.t1 | MTR_3g100620 | 62.241 | 241 | 77 | 2 | 7 | 233 | 11 | 251 | 5.32e-105 | 304 |
| MS.gene09061.t1 | MTR_3g099380 | 64.677 | 201 | 58 | 2 | 2 | 189 | 3 | 203 | 4.89e-87 | 257 |
| MS.gene09061.t1 | MTR_0137s0020 | 50.207 | 241 | 103 | 4 | 7 | 233 | 11 | 248 | 2.15e-69 | 214 |
| MS.gene09061.t1 | MTR_3g014060 | 48.988 | 247 | 109 | 4 | 1 | 233 | 5 | 248 | 2.36e-68 | 211 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09061.t1 | AT2G42590 | 75.096 | 261 | 52 | 2 | 1 | 248 | 1 | 261 | 2.03e-143 | 402 |
| MS.gene09061.t1 | AT2G42590 | 74.809 | 262 | 52 | 3 | 1 | 248 | 1 | 262 | 1.32e-141 | 397 |
| MS.gene09061.t1 | AT2G42590 | 74.809 | 262 | 52 | 3 | 1 | 248 | 1 | 262 | 1.36e-141 | 398 |
| MS.gene09061.t1 | AT1G26480 | 74.590 | 244 | 51 | 1 | 2 | 234 | 5 | 248 | 6.28e-135 | 381 |
| MS.gene09061.t1 | AT1G22300 | 74.793 | 242 | 50 | 1 | 6 | 236 | 4 | 245 | 2.51e-127 | 361 |
| MS.gene09061.t1 | AT1G22300 | 74.793 | 242 | 50 | 1 | 6 | 236 | 4 | 245 | 2.62e-127 | 361 |
| MS.gene09061.t1 | AT1G34760 | 71.369 | 241 | 58 | 1 | 6 | 235 | 4 | 244 | 2.25e-125 | 356 |
| MS.gene09061.t1 | AT1G34760 | 71.369 | 241 | 58 | 1 | 6 | 235 | 4 | 244 | 2.26e-125 | 356 |
| MS.gene09061.t1 | AT1G22300 | 75.105 | 237 | 48 | 1 | 6 | 231 | 4 | 240 | 6.93e-125 | 355 |
| MS.gene09061.t1 | AT1G35160 | 68.145 | 248 | 66 | 2 | 2 | 236 | 6 | 253 | 2.00e-118 | 339 |
| MS.gene09061.t1 | AT1G78300 | 69.136 | 243 | 62 | 3 | 7 | 236 | 5 | 247 | 5.70e-118 | 337 |
| MS.gene09061.t1 | AT5G38480 | 71.250 | 240 | 56 | 3 | 7 | 233 | 4 | 243 | 4.52e-117 | 335 |
| MS.gene09061.t1 | AT5G38480 | 71.250 | 240 | 56 | 3 | 7 | 233 | 4 | 243 | 4.52e-117 | 335 |
| MS.gene09061.t1 | AT1G35160 | 69.874 | 239 | 59 | 3 | 2 | 227 | 6 | 244 | 1.08e-116 | 335 |
| MS.gene09061.t1 | AT5G38480 | 68.775 | 253 | 65 | 4 | 7 | 246 | 4 | 255 | 1.30e-116 | 334 |
| MS.gene09061.t1 | AT4G09000 | 67.769 | 242 | 65 | 3 | 2 | 230 | 5 | 246 | 2.72e-116 | 333 |
| MS.gene09061.t1 | AT3G02520 | 69.835 | 242 | 58 | 4 | 7 | 233 | 5 | 246 | 7.23e-115 | 330 |
| MS.gene09061.t1 | AT3G02520 | 69.835 | 242 | 58 | 4 | 7 | 233 | 5 | 246 | 7.23e-115 | 330 |
| MS.gene09061.t1 | AT4G09000 | 68.201 | 239 | 63 | 3 | 2 | 227 | 5 | 243 | 3.19e-114 | 330 |
| MS.gene09061.t1 | AT5G65430 | 65.992 | 247 | 70 | 2 | 1 | 233 | 1 | 247 | 3.55e-114 | 327 |
| MS.gene09061.t1 | AT5G10450 | 65.182 | 247 | 72 | 2 | 1 | 233 | 1 | 247 | 2.02e-113 | 325 |
| MS.gene09061.t1 | AT5G65430 | 65.984 | 244 | 69 | 2 | 1 | 230 | 1 | 244 | 9.85e-113 | 324 |
| MS.gene09061.t1 | AT5G10450 | 65.164 | 244 | 71 | 2 | 1 | 230 | 1 | 244 | 3.87e-112 | 322 |
| MS.gene09061.t1 | AT5G65430 | 66.390 | 241 | 67 | 2 | 1 | 227 | 1 | 241 | 1.04e-111 | 322 |
| MS.gene09061.t1 | AT5G10450 | 65.560 | 241 | 69 | 2 | 1 | 227 | 1 | 241 | 2.40e-111 | 321 |
| MS.gene09061.t1 | AT5G10450 | 65.560 | 241 | 69 | 2 | 1 | 227 | 1 | 241 | 7.31e-111 | 320 |
| MS.gene09061.t1 | AT5G16050 | 63.855 | 249 | 77 | 2 | 1 | 236 | 1 | 249 | 1.87e-107 | 311 |
| MS.gene09061.t1 | AT5G16050 | 63.855 | 249 | 77 | 2 | 1 | 236 | 1 | 249 | 1.87e-107 | 311 |
| MS.gene09061.t1 | AT1G78220 | 51.293 | 232 | 101 | 1 | 6 | 225 | 4 | 235 | 6.62e-80 | 240 |
| MS.gene09061.t1 | AT1G22290 | 49.758 | 207 | 83 | 5 | 6 | 203 | 4 | 198 | 9.98e-56 | 178 |
| MS.gene09061.t1 | AT1G22290 | 49.510 | 204 | 82 | 5 | 6 | 200 | 4 | 195 | 1.92e-55 | 176 |
| MS.gene09061.t1 | AT2G10450 | 61.702 | 47 | 17 | 1 | 193 | 238 | 16 | 62 | 3.56e-11 | 58.2 |
Find 66 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTGATTATGCAGCTTCTA+AGG | 0.184591 | 4.4:-13876721 | MS.gene09061:CDS |
| AGGGGATTATTATCGGTATT+TGG | 0.213214 | 4.4:-13878130 | MS.gene09061:CDS |
| CAATAATATGCATACCTTTC+AGG | 0.215945 | 4.4:+13876895 | None:intergenic |
| TAATGATTACCTCCATCTTC+AGG | 0.273259 | 4.4:+13876668 | None:intergenic |
| CATGATATCACTGCATATAT+TGG | 0.293412 | 4.4:+13878224 | None:intergenic |
| AGAACGTAGTGGGTGCTCAT+AGG | 0.371672 | 4.4:-13878356 | MS.gene09061:CDS |
| TGGGTGCTCATAGGGCTTCA+TGG | 0.373885 | 4.4:-13878347 | MS.gene09061:CDS |
| GCATCCCATTCGATTGGGTT+TGG | 0.375573 | 4.4:-13876959 | MS.gene09061:CDS |
| GAACAAAAGGTGGAATCTTC+AGG | 0.377055 | 4.4:-13875749 | MS.gene09061:CDS |
| TCATTCCATGGAAGCATATC+AGG | 0.381388 | 4.4:-13878067 | MS.gene09061:intron |
| AAATGAAAGGGGATTATTAT+CGG | 0.396472 | 4.4:-13878137 | MS.gene09061:intron |
| TCTTGTAGCCAACTGATAGA+AGG | 0.402262 | 4.4:+13878376 | None:intergenic |
| TTCAGCTTGTTCAGCGAGCT+TGG | 0.412085 | 4.4:+13878763 | None:intergenic |
| TCTATCCTCAATTGAGCATA+AGG | 0.430983 | 4.4:-13878319 | MS.gene09061:CDS |
| CCAACGCATCCCATTCGATT+GGG | 0.436518 | 4.4:-13876964 | MS.gene09061:CDS |
| TTTAACAGATGAGGAACAAA+AGG | 0.436649 | 4.4:-13875762 | MS.gene09061:intron |
| GGCATGTCACCTTGCTAAGC+AGG | 0.441855 | 4.4:-13876804 | MS.gene09061:CDS |
| TTCTTCCTTATGCTCAATTG+AGG | 0.450139 | 4.4:+13878314 | None:intergenic |
| CCCTTCTGCTGCAGTGGAAG+CGG | 0.455549 | 4.4:+13876996 | None:intergenic |
| AATGATTACCTCCATCTTCA+GGG | 0.461652 | 4.4:+13876669 | None:intergenic |
| GAACGTAGTGGGTGCTCATA+GGG | 0.465330 | 4.4:-13878355 | MS.gene09061:CDS |
| CCCAATCGAATGGGATGCGT+TGG | 0.472611 | 4.4:+13876964 | None:intergenic |
| CTTATTCCATCGTCCTCTGC+TGG | 0.475641 | 4.4:-13878183 | MS.gene09061:intron |
| AGCATAAGGAAGAATCTAAA+GGG | 0.479531 | 4.4:-13878305 | MS.gene09061:CDS |
| CGCTTCCACTGCAGCAGAAG+GGG | 0.482864 | 4.4:-13876995 | MS.gene09061:CDS |
| GAGCATAAGGAAGAATCTAA+AGG | 0.492100 | 4.4:-13878306 | MS.gene09061:CDS |
| GTGGAATCTTCAGGAGCTGT+TGG | 0.492385 | 4.4:-13875740 | MS.gene09061:CDS |
| ACCGCTTCCACTGCAGCAGA+AGG | 0.492609 | 4.4:-13876997 | MS.gene09061:CDS |
| AATCGAATGGGATGCGTTGG+AGG | 0.498321 | 4.4:+13876967 | None:intergenic |
| ACGTTCCTTGGTGGAAGCCA+TGG | 0.499863 | 4.4:+13878805 | None:intergenic |
| TATTTGGCGGAATTTAAGAA+TGG | 0.505553 | 4.4:-13878114 | MS.gene09061:CDS |
| TGTGAATGTGAAGAGGATAA+AGG | 0.513152 | 4.4:-13878277 | MS.gene09061:CDS |
| TCCAACGCATCCCATTCGAT+TGG | 0.513679 | 4.4:-13876965 | MS.gene09061:CDS |
| ACTTCTGACATCCCTGAAGA+TGG | 0.519635 | 4.4:-13876680 | MS.gene09061:CDS |
| TAACTCCCCTTCTGCTGCAG+TGG | 0.529859 | 4.4:+13876990 | None:intergenic |
| GAGAGAAACCTTCTATCAGT+TGG | 0.536428 | 4.4:-13878384 | MS.gene09061:CDS |
| TGATGAAGCAATCTCCGAGT+TGG | 0.540762 | 4.4:-13876777 | MS.gene09061:CDS |
| AAAGCCAAACCCAATCGAAT+GGG | 0.542021 | 4.4:+13876955 | None:intergenic |
| CAAAGCCAAACCCAATCGAA+TGG | 0.549011 | 4.4:+13876954 | None:intergenic |
| ATTGATTATGCAGCTTCTAA+GGG | 0.556365 | 4.4:-13876720 | MS.gene09061:CDS |
| CATCAAATGCCTGCTTAGCA+AGG | 0.556866 | 4.4:+13876795 | None:intergenic |
| GAATCTTCAGGAGCTGTTGG+AGG | 0.564663 | 4.4:-13875737 | MS.gene09061:CDS |
| CCGCTTCCACTGCAGCAGAA+GGG | 0.566148 | 4.4:-13876996 | MS.gene09061:CDS |
| GAACAAGCTGAACGCTATGA+AGG | 0.567764 | 4.4:-13878752 | MS.gene09061:intron |
| AACAGATGAGGAACAAAAGG+TGG | 0.567855 | 4.4:-13875759 | MS.gene09061:intron |
| GCAGACCTGATATGCTTCCA+TGG | 0.579067 | 4.4:+13878062 | None:intergenic |
| GGATTATTATCGGTATTTGG+CGG | 0.591213 | 4.4:-13878127 | MS.gene09061:CDS |
| AGAGGCTGCTGATCATTCCA+TGG | 0.596075 | 4.4:-13878079 | MS.gene09061:CDS |
| GACACTAGATTCACCAGCAG+AGG | 0.596973 | 4.4:+13878170 | None:intergenic |
| GAATGGTGATGAGCGAAAAG+AGG | 0.603840 | 4.4:-13878097 | MS.gene09061:CDS |
| GTTGGCTACAAGAACGTAGT+GGG | 0.620992 | 4.4:-13878366 | MS.gene09061:CDS |
| TGTCAGAAGTCCACAATGTG+AGG | 0.623979 | 4.4:+13876693 | None:intergenic |
| GATTCACCAGCAGAGGACGA+TGG | 0.625143 | 4.4:+13878177 | None:intergenic |
| AATTTCCATGGCTTCCACCA+AGG | 0.626045 | 4.4:-13878810 | None:intergenic |
| TGTTGGAGGTGAAAATGCAT+AGG | 0.631634 | 4.4:-13875723 | None:intergenic |
| CGAGTTGGATACTCTGAGTG+AGG | 0.651430 | 4.4:-13876762 | MS.gene09061:CDS |
| TAAGGGACAACCTCACATTG+TGG | 0.657719 | 4.4:-13876703 | MS.gene09061:CDS |
| TCTGACATCCCTGAAGATGG+AGG | 0.665639 | 4.4:-13876677 | MS.gene09061:intron |
| AGTTGGCTACAAGAACGTAG+TGG | 0.666503 | 4.4:-13878367 | MS.gene09061:CDS |
| CTCACTCAGAGTATCCAACT+CGG | 0.668173 | 4.4:+13876763 | None:intergenic |
| GCTAGATGTTGAGTTGACAG+TGG | 0.686884 | 4.4:-13878409 | MS.gene09061:CDS |
| GGAATGATGTGAATGTGAAG+AGG | 0.689723 | 4.4:-13878284 | MS.gene09061:CDS |
| AAAGGAGTATAGACACAAGG+TGG | 0.694713 | 4.4:-13878259 | MS.gene09061:CDS |
| GTGCTCATAGGGCTTCATGG+AGG | 0.700802 | 4.4:-13878344 | MS.gene09061:CDS |
| GATAAAGGAGTATAGACACA+AGG | 0.704247 | 4.4:-13878262 | MS.gene09061:CDS |
| GGTGGAAGCAATGAAGAATG+TGG | 0.728314 | 4.4:-13878436 | MS.gene09061:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAAATAAAAATAAATGATT+CGG | + | chr4.4:13877950-13877969 | None:intergenic | 10.0% |
| !!! | ATTTTTATTTGATAGAATTA+AGG | - | chr4.4:13877958-13877977 | MS.gene09061:intron | 10.0% |
| !! | AATCATCATAAAAAAAATCA+AGG | + | chr4.4:13875934-13875953 | None:intergenic | 15.0% |
| !! | ATCATCATAAAAAAAATCAA+GGG | + | chr4.4:13875933-13875952 | None:intergenic | 15.0% |
| !! | ATTGATTAAGAAATTGAAAT+TGG | - | chr4.4:13875997-13876016 | MS.gene09061:intron | 15.0% |
| !! | TAGTTATAGGATAAATATAA+AGG | + | chr4.4:13877356-13877375 | None:intergenic | 15.0% |
| !! | TTGATTAAGAAATTGAAATT+GGG | - | chr4.4:13875998-13876017 | MS.gene09061:intron | 15.0% |
| !!! | AAAAATTGATTTTGGATAAA+AGG | + | chr4.4:13877114-13877133 | None:intergenic | 15.0% |
| !!! | TAAAATCAATTTTATGTGTT+TGG | + | chr4.4:13876971-13876990 | None:intergenic | 15.0% |
| !!! | TCTTTTTCTATAAAATGAAA+GGG | - | chr4.4:13876378-13876397 | MS.gene09061:intron | 15.0% |
| !!! | TTTTTTAAATATTATGGAAG+AGG | - | chr4.4:13878529-13878548 | MS.gene09061:intron | 15.0% |
| !! | AAAAATGGAAGTAAAGAAAA+TGG | + | chr4.4:13875816-13875835 | None:intergenic | 20.0% |
| !! | AAAATGGAAGTAAAGAAAAT+GGG | + | chr4.4:13875815-13875834 | None:intergenic | 20.0% |
| !! | AAATTATAAAGAAAATAGCC+AGG | + | chr4.4:13878715-13878734 | None:intergenic | 20.0% |
| !! | ACTCTTAAATCTGTATATAT+AGG | + | chr4.4:13875874-13875893 | None:intergenic | 20.0% |
| !! | ATAGAATTAAGGATGAAAAT+AGG | - | chr4.4:13877969-13877988 | MS.gene09061:intron | 20.0% |
| !! | ATGAGTTAAAAAATCTTGTT+TGG | + | chr4.4:13877077-13877096 | None:intergenic | 20.0% |
| !! | TATCTGTATTTACTTTAAGT+AGG | + | chr4.4:13878145-13878164 | None:intergenic | 20.0% |
| !! | TCATCATAAAAAAAATCAAG+GGG | + | chr4.4:13875932-13875951 | None:intergenic | 20.0% |
| !! | TTAAATATGTGAAAAACTGA+TGG | + | chr4.4:13878264-13878283 | None:intergenic | 20.0% |
| !! | TTATGAATTATCAGATTAAC+AGG | + | chr4.4:13877501-13877520 | None:intergenic | 20.0% |
| !!! | AGAATTGATTTTGAAATGTT+TGG | - | chr4.4:13876716-13876735 | MS.gene09061:CDS | 20.0% |
| !!! | CTTTTTCTATAAAATGAAAG+GGG | - | chr4.4:13876379-13876398 | MS.gene09061:intron | 20.0% |
| !!! | GTCTTTTTCTATAAAATGAA+AGG | - | chr4.4:13876377-13876396 | MS.gene09061:intron | 20.0% |
| !!! | TCAGTTTTTCACATATTTAA+AGG | - | chr4.4:13878264-13878283 | MS.gene09061:CDS | 20.0% |
| !!! | TGAACTTTAAGAGAAAAAAA+TGG | + | chr4.4:13875831-13875850 | None:intergenic | 20.0% |
| !!! | TTGAAATTTTCATTGTGTTT+TGG | - | chr4.4:13875973-13875992 | MS.gene09061:intron | 20.0% |
| !!! | TTGATTTTGTATTCAGAATT+TGG | - | chr4.4:13876753-13876772 | MS.gene09061:CDS | 20.0% |
| ! | AAAATATGAGTAAAGTTGAC+AGG | + | chr4.4:13878677-13878696 | None:intergenic | 25.0% |
| ! | AAATGAAAGGGGATTATTAT+CGG | - | chr4.4:13876390-13876409 | MS.gene09061:intron | 25.0% |
| ! | AATAAGTACATAAGAAACTG+AGG | + | chr4.4:13878477-13878496 | None:intergenic | 25.0% |
| ! | AATATCTTATCAGAGATCAT+AGG | + | chr4.4:13877379-13877398 | None:intergenic | 25.0% |
| ! | AGTTAAAAGCTACAGATAAT+AGG | + | chr4.4:13877054-13877073 | None:intergenic | 25.0% |
| ! | ATGATACGTTAATGTAAAAG+TGG | + | chr4.4:13876827-13876846 | None:intergenic | 25.0% |
| ! | TATATCTTTGCGGTTTAAAA+TGG | - | chr4.4:13876505-13876524 | MS.gene09061:intron | 25.0% |
| !! | AAAAAAAGTATGTTCTAGCT+TGG | + | chr4.4:13878028-13878047 | None:intergenic | 25.0% |
| !! | ATAAAGTCAGATTTTCTAGA+AGG | - | chr4.4:13878312-13878331 | MS.gene09061:CDS | 25.0% |
| !! | ATGCAATTTGTTTATGTAAC+TGG | - | chr4.4:13878404-13878423 | MS.gene09061:CDS | 25.0% |
| !! | CAGAACTTTTTATATCTTTG+CGG | - | chr4.4:13876495-13876514 | MS.gene09061:intron | 25.0% |
| !! | GTTGTATACTTTTACTGTTT+TGG | - | chr4.4:13876057-13876076 | MS.gene09061:intron | 25.0% |
| !! | TTAGATTTTGTACTTTGTCT+TGG | - | chr4.4:13878192-13878211 | MS.gene09061:CDS | 25.0% |
| !!! | AAAAAAGTATGTTCTAGCTT+GGG | + | chr4.4:13878027-13878046 | None:intergenic | 25.0% |
| !!! | ATGATTTGTAGTTCATTTTG+TGG | - | chr4.4:13877228-13877247 | MS.gene09061:intron | 25.0% |
| !!! | ATTTGATTTTGAACACGTTA+AGG | + | chr4.4:13878453-13878472 | None:intergenic | 25.0% |
| !!! | GGAGATAAAATTGATTTTAG+AGG | - | chr4.4:13876690-13876709 | MS.gene09061:CDS | 25.0% |
| AAACATCAAGCTTAGAACAT+TGG | + | chr4.4:13875899-13875918 | None:intergenic | 30.0% | |
| AATATGTGAAAAACTGATGG+AGG | + | chr4.4:13878261-13878280 | None:intergenic | 30.0% | |
| AGCATAAGGAAGAATCTAAA+GGG | - | chr4.4:13876222-13876241 | MS.gene09061:intron | 30.0% | |
| ATGTCTATCTTAACTGAAGA+TGG | - | chr4.4:13876599-13876618 | MS.gene09061:intron | 30.0% | |
| ATTATCAGATTAACAGGACT+TGG | + | chr4.4:13877495-13877514 | None:intergenic | 30.0% | |
| ATTGATTATGCAGCTTCTAA+GGG | - | chr4.4:13877807-13877826 | MS.gene09061:intron | 30.0% | |
| CAATAATATGCATACCTTTC+AGG | + | chr4.4:13877635-13877654 | None:intergenic | 30.0% | |
| CATGATATCACTGCATATAT+TGG | + | chr4.4:13876306-13876325 | None:intergenic | 30.0% | |
| TAAACAGATCGCTTAATTGT+TGG | + | chr4.4:13878627-13878646 | None:intergenic | 30.0% | |
| TAGTGAATTAAAGAAGCGAA+GGG | + | chr4.4:13876642-13876661 | None:intergenic | 30.0% | |
| TATTTGGCGGAATTTAAGAA+TGG | - | chr4.4:13876413-13876432 | MS.gene09061:intron | 30.0% | |
| TGAAAAGCTTGACAAGTTTA+TGG | + | chr4.4:13878219-13878238 | None:intergenic | 30.0% | |
| TGCAACACTTATTTGAATGA+AGG | - | chr4.4:13877413-13877432 | MS.gene09061:intron | 30.0% | |
| TGGATTGAACAATGAATTCA+AGG | + | chr4.4:13876807-13876826 | None:intergenic | 30.0% | |
| TGTATTTACTTTAAGTAGGC+CGG | + | chr4.4:13878141-13878160 | None:intergenic | 30.0% | |
| TGTTTCATGTAGAGAAGAAA+AGG | - | chr4.4:13877291-13877310 | MS.gene09061:intron | 30.0% | |
| TTTAACAGATGAGGAACAAA+AGG | - | chr4.4:13878765-13878784 | MS.gene09061:CDS | 30.0% | |
| TTTGTTTATGTAACTGGTAG+TGG | - | chr4.4:13878410-13878429 | MS.gene09061:CDS | 30.0% | |
| ! | AAATTTTGAACTCTCCTGAA+AGG | - | chr4.4:13877618-13877637 | MS.gene09061:intron | 30.0% |
| ! | AATAGACACACTTGATTTTG+CGG | + | chr4.4:13877141-13877160 | None:intergenic | 30.0% |
| !! | AAAAAGTATGTTCTAGCTTG+GGG | + | chr4.4:13878026-13878045 | None:intergenic | 30.0% |
| !! | GTCTAGTCTTATAGCTAAAT+AGG | + | chr4.4:13878084-13878103 | None:intergenic | 30.0% |
| !! | TATGTGTTTGGAATCACTTT+TGG | + | chr4.4:13876959-13876978 | None:intergenic | 30.0% |
| !! | TTCTTTTCTAGTATGTTAGC+TGG | - | chr4.4:13877895-13877914 | MS.gene09061:intron | 30.0% |
| !! | TTTGCTGTTATTTCAAAACC+TGG | - | chr4.4:13878694-13878713 | MS.gene09061:intron | 30.0% |
| !!! | ACTGTTTTGGTTGATAGAAA+TGG | - | chr4.4:13876070-13876089 | MS.gene09061:intron | 30.0% |
| AAACATATCACCGAAGTTTC+AGG | + | chr4.4:13877679-13877698 | None:intergenic | 35.0% | |
| AATGATTACCTCCATCTTCA+GGG | + | chr4.4:13877861-13877880 | None:intergenic | 35.0% | |
| ACACACATGATAACCATCAT+AGG | + | chr4.4:13876551-13876570 | None:intergenic | 35.0% | |
| AGGGGATTATTATCGGTATT+TGG | - | chr4.4:13876397-13876416 | MS.gene09061:intron | 35.0% | |
| ATATCACCTATGACAAGTAC+CGG | + | chr4.4:13877170-13877189 | None:intergenic | 35.0% | |
| ATGACACTCCTCATATTTCA+GGG | - | chr4.4:13877702-13877721 | MS.gene09061:intron | 35.0% | |
| CAGAGATCATAGGTAGTTAT+AGG | + | chr4.4:13877369-13877388 | None:intergenic | 35.0% | |
| CCTCATCTGTTAAAAAAACG+AGG | + | chr4.4:13878759-13878778 | None:intergenic | 35.0% | |
| CTAGTGAATTAAAGAAGCGA+AGG | + | chr4.4:13876643-13876662 | None:intergenic | 35.0% | |
| GAGCATAAGGAAGAATCTAA+AGG | - | chr4.4:13876221-13876240 | MS.gene09061:intron | 35.0% | |
| GGATTATTATCGGTATTTGG+CGG | - | chr4.4:13876400-13876419 | MS.gene09061:intron | 35.0% | |
| GGCTACCAAAAAATCCATTT+GGG | - | chr4.4:13878108-13878127 | MS.gene09061:CDS | 35.0% | |
| TAATGATTACCTCCATCTTC+AGG | + | chr4.4:13877862-13877881 | None:intergenic | 35.0% | |
| TAGCTATAAGACTAGACTTC+TGG | - | chr4.4:13878087-13878106 | MS.gene09061:CDS | 35.0% | |
| TCTATCCTCAATTGAGCATA+AGG | - | chr4.4:13876208-13876227 | MS.gene09061:intron | 35.0% | |
| TGGCTACCAAAAAATCCATT+TGG | - | chr4.4:13878107-13878126 | MS.gene09061:CDS | 35.0% | |
| TGTGAATGTGAAGAGGATAA+AGG | - | chr4.4:13876250-13876269 | MS.gene09061:intron | 35.0% | |
| TTCCTACAGCATAGAAAATC+TGG | + | chr4.4:13878374-13878393 | None:intergenic | 35.0% | |
| TTCTTCCTTATGCTCAATTG+AGG | + | chr4.4:13876216-13876235 | None:intergenic | 35.0% | |
| TTTGAACTCTCCTGAAACTT+CGG | - | chr4.4:13877666-13877685 | MS.gene09061:intron | 35.0% | |
| ! | CATTGATTATGCAGCTTCTA+AGG | - | chr4.4:13877806-13877825 | MS.gene09061:intron | 35.0% |
| ! | GATAAAGGAGTATAGACACA+AGG | - | chr4.4:13876265-13876284 | MS.gene09061:intron | 35.0% |
| ! | GTTCTAAGCTTGATGTTTCT+TGG | - | chr4.4:13875901-13875920 | MS.gene09061:intron | 35.0% |
| ! | GTTTTCTTTTCTGCCTATGA+TGG | - | chr4.4:13876535-13876554 | MS.gene09061:intron | 35.0% |
| ! | TGTATGCTTGGTTTCACTTT+TGG | - | chr4.4:13876666-13876685 | MS.gene09061:intron | 35.0% |
| !! | AAGAAAATGGGTTAGAGAGA+AGG | + | chr4.4:13875803-13875822 | None:intergenic | 35.0% |
| !! | ATTCACTAGTCTTGTATGCT+TGG | - | chr4.4:13876654-13876673 | MS.gene09061:intron | 35.0% |
| !! | CAGTTTTGACATTTTCGTCA+TGG | - | chr4.4:13878648-13878667 | MS.gene09061:intron | 35.0% |
| !! | GCGGTGACAAAAATTGATTT+TGG | + | chr4.4:13877122-13877141 | None:intergenic | 35.0% |
| !!! | CCTCGTTTTTTTAACAGATG+AGG | - | chr4.4:13878756-13878775 | MS.gene09061:CDS | 35.0% |
| !!! | GTTTTGGTTGATAGAAATGG+TGG | - | chr4.4:13876073-13876092 | MS.gene09061:intron | 35.0% |
| AAAATCCATGAACAAGCGAG+GGG | - | chr4.4:13878577-13878596 | MS.gene09061:intron | 40.0% | |
| AAAGCCAAACCCAATCGAAT+GGG | + | chr4.4:13877575-13877594 | None:intergenic | 40.0% | |
| AAATAGGTCAAACCAACCGA+CGG | - | chr4.4:13877985-13878004 | MS.gene09061:intron | 40.0% | |
| AACAGATGAGGAACAAAAGG+TGG | - | chr4.4:13878768-13878787 | MS.gene09061:CDS | 40.0% | |
| ATCAGATTAACAGGACTTGG+CGG | + | chr4.4:13877492-13877511 | None:intergenic | 40.0% | |
| ATGTAGAGAAGAAAAGGAGC+GGG | - | chr4.4:13877297-13877316 | MS.gene09061:intron | 40.0% | |
| CAAAATCCATGAACAAGCGA+GGG | - | chr4.4:13878576-13878595 | MS.gene09061:intron | 40.0% | |
| CATAGGTGATATGAGCTTTG+AGG | - | chr4.4:13877178-13877197 | MS.gene09061:intron | 40.0% | |
| CATGACACTCCTCATATTTC+AGG | - | chr4.4:13877701-13877720 | MS.gene09061:intron | 40.0% | |
| CATGTAGAGAAGAAAAGGAG+CGG | - | chr4.4:13877296-13877315 | MS.gene09061:intron | 40.0% | |
| CTACAGCATAGAAAATCTGG+TGG | + | chr4.4:13878371-13878390 | None:intergenic | 40.0% | |
| GAACAAAAGGTGGAATCTTC+AGG | - | chr4.4:13878778-13878797 | MS.gene09061:CDS | 40.0% | |
| GAGAGAAACCTTCTATCAGT+TGG | - | chr4.4:13876143-13876162 | MS.gene09061:intron | 40.0% | |
| GGAATGATGTGAATGTGAAG+AGG | - | chr4.4:13876243-13876262 | MS.gene09061:intron | 40.0% | |
| TCAAAATCCATGAACAAGCG+AGG | - | chr4.4:13878575-13878594 | MS.gene09061:intron | 40.0% | |
| TCTTGTAGCCAACTGATAGA+AGG | + | chr4.4:13876154-13876173 | None:intergenic | 40.0% | |
| TGGATATGTAGTTGCTTGCT+TGG | - | chr4.4:13876575-13876594 | MS.gene09061:intron | 40.0% | |
| TGGTTATCATGTGTGTTGTG+TGG | - | chr4.4:13876555-13876574 | MS.gene09061:intron | 40.0% | |
| TTTGTCACCTCAGAACCAAA+CGG | - | chr4.4:13876922-13876941 | MS.gene09061:CDS | 40.0% | |
| ! | AAAGGAGTATAGACACAAGG+TGG | - | chr4.4:13876268-13876287 | MS.gene09061:intron | 40.0% |
| ! | ACTTGTTAGGTAGGAGAAAG+TGG | - | chr4.4:13877201-13877220 | MS.gene09061:intron | 40.0% |
| ! | CACCAGATTTTCTATGCTGT+AGG | - | chr4.4:13878369-13878388 | MS.gene09061:CDS | 40.0% |
| ! | GACTCGATCTGAAATGTGAA+TGG | - | chr4.4:13877917-13877936 | MS.gene09061:intron | 40.0% |
| ! | TCATTCCATGGAAGCATATC+AGG | - | chr4.4:13876460-13876479 | MS.gene09061:intron | 40.0% |
| !! | AAGTGTGTCTATTTCTGAGC+CGG | - | chr4.4:13877148-13877167 | MS.gene09061:intron | 40.0% |
| !! | ATGAGCTTTGAGGACTTGTT+AGG | - | chr4.4:13877188-13877207 | MS.gene09061:intron | 40.0% |
| !! | ATGCTTGGTTTCACTTTTGG+AGG | - | chr4.4:13876669-13876688 | MS.gene09061:intron | 40.0% |
| !!! | TGAGGCCCAAATGGATTTTT+TGG | + | chr4.4:13878116-13878135 | None:intergenic | 40.0% |
| AAAAGGAGCGGGAAGATAAG+AGG | - | chr4.4:13877308-13877327 | MS.gene09061:intron | 45.0% | |
| AAAGGAGCGGGAAGATAAGA+GGG | - | chr4.4:13877309-13877328 | MS.gene09061:intron | 45.0% | |
| AATAGGTCAAACCAACCGAC+GGG | - | chr4.4:13877986-13878005 | MS.gene09061:intron | 45.0% | |
| ACCTCAGAACCAAACGGTTT+AGG | - | chr4.4:13876928-13876947 | MS.gene09061:CDS | 45.0% | |
| ACTTCTGACATCCCTGAAGA+TGG | - | chr4.4:13877847-13877866 | MS.gene09061:intron | 45.0% | |
| AGTTGGCTACAAGAACGTAG+TGG | - | chr4.4:13876160-13876179 | MS.gene09061:intron | 45.0% | |
| CAAAGCCAAACCCAATCGAA+TGG | + | chr4.4:13877576-13877595 | None:intergenic | 45.0% | |
| CATCAAATGCCTGCTTAGCA+AGG | + | chr4.4:13877735-13877754 | None:intergenic | 45.0% | |
| CTCAACAGCCAACTTCACAT+TGG | + | chr4.4:13877445-13877464 | None:intergenic | 45.0% | |
| GAACAAGCTGAACGCTATGA+AGG | - | chr4.4:13875775-13875794 | MS.gene09061:intron | 45.0% | |
| GGCATCAACCAATGTGAAGT+TGG | - | chr4.4:13877434-13877453 | MS.gene09061:intron | 45.0% | |
| GGTGGAAGCAATGAAGAATG+TGG | - | chr4.4:13876091-13876110 | MS.gene09061:intron | 45.0% | |
| GTGACATGCCCTGAAATATG+AGG | + | chr4.4:13877713-13877732 | None:intergenic | 45.0% | |
| GTTGGCTACAAGAACGTAGT+GGG | - | chr4.4:13876161-13876180 | MS.gene09061:intron | 45.0% | |
| TAAGGGACAACCTCACATTG+TGG | - | chr4.4:13877824-13877843 | MS.gene09061:intron | 45.0% | |
| TGATGAAGCAATCTCCGAGT+TGG | - | chr4.4:13877750-13877769 | MS.gene09061:intron | 45.0% | |
| TGTCAGAAGTCCACAATGTG+AGG | + | chr4.4:13877837-13877856 | None:intergenic | 45.0% | |
| TGTGAAAAACTGATGGAGGC+TGG | + | chr4.4:13878257-13878276 | None:intergenic | 45.0% | |
| ! | CTCACTCAGAGTATCCAACT+CGG | + | chr4.4:13877767-13877786 | None:intergenic | 45.0% |
| ! | GAAGTTTTCACGTTCCTTGG+TGG | + | chr4.4:13875734-13875753 | None:intergenic | 45.0% |
| ! | GAATGGTGATGAGCGAAAAG+AGG | - | chr4.4:13876430-13876449 | MS.gene09061:intron | 45.0% |
| ! | GACGAAGTTTTCACGTTCCT+TGG | + | chr4.4:13875737-13875756 | None:intergenic | 45.0% |
| ! | TTGGCTCTTCCTAAACCGTT+TGG | + | chr4.4:13876940-13876959 | None:intergenic | 45.0% |
| !! | AGTATGTTCTAGCTTGGGGT+AGG | + | chr4.4:13878022-13878041 | None:intergenic | 45.0% |
| !! | GCTAGATGTTGAGTTGACAG+TGG | - | chr4.4:13876118-13876137 | MS.gene09061:intron | 45.0% |
| !! | GCTTTGAGGACTTGTTAGGT+AGG | - | chr4.4:13877192-13877211 | MS.gene09061:intron | 45.0% |
| !! | GTATGTTCTAGCTTGGGGTA+GGG | + | chr4.4:13878021-13878040 | None:intergenic | 45.0% |
| !! | TCCTAAACCGTTTGGTTCTG+AGG | + | chr4.4:13876932-13876951 | None:intergenic | 45.0% |
| !!! | AAAACATTTTTTAAATATTA+TGG | - | chr4.4:13878523-13878542 | MS.gene09061:intron | 5.0% |
| AAGGAGCGGGAAGATAAGAG+GGG | - | chr4.4:13877310-13877329 | MS.gene09061:intron | 50.0% | |
| AATCCATTTGGGCCTCAGAC+CGG | - | chr4.4:13878119-13878138 | MS.gene09061:CDS | 50.0% | |
| AATCGAATGGGATGCGTTGG+AGG | + | chr4.4:13877563-13877582 | None:intergenic | 50.0% | |
| ACTTTAAGTAGGCCGGTCTG+AGG | + | chr4.4:13878134-13878153 | None:intergenic | 50.0% | |
| AGAGGCTGCTGATCATTCCA+TGG | - | chr4.4:13876448-13876467 | MS.gene09061:intron | 50.0% | |
| CCAACGCATCCCATTCGATT+GGG | - | chr4.4:13877563-13877582 | MS.gene09061:intron | 50.0% | |
| CTTATTCCATCGTCCTCTGC+TGG | - | chr4.4:13876344-13876363 | MS.gene09061:intron | 50.0% | |
| GAATCTTCAGGAGCTGTTGG+AGG | - | chr4.4:13878790-13878809 | MS.gene09061:CDS | 50.0% | |
| GACACTAGATTCACCAGCAG+AGG | + | chr4.4:13876360-13876379 | None:intergenic | 50.0% | |
| GCAGACCTGATATGCTTCCA+TGG | + | chr4.4:13876468-13876487 | None:intergenic | 50.0% | |
| GCATCCCATTCGATTGGGTT+TGG | - | chr4.4:13877568-13877587 | MS.gene09061:intron | 50.0% | |
| GTGGAATCTTCAGGAGCTGT+TGG | - | chr4.4:13878787-13878806 | MS.gene09061:CDS | 50.0% | |
| TCCAACGCATCCCATTCGAT+TGG | - | chr4.4:13877562-13877581 | MS.gene09061:intron | 50.0% | |
| TCTGACATCCCTGAAGATGG+AGG | - | chr4.4:13877850-13877869 | MS.gene09061:intron | 50.0% | |
| TCTGAGCCGGTACTTGTCAT+AGG | - | chr4.4:13877161-13877180 | MS.gene09061:intron | 50.0% | |
| ! | CGAGTTGGATACTCTGAGTG+AGG | - | chr4.4:13877765-13877784 | MS.gene09061:intron | 50.0% |
| ! | TTCAGCTTGTTCAGCGAGCT+TGG | + | chr4.4:13875767-13875786 | None:intergenic | 50.0% |
| !! | AGAACGTAGTGGGTGCTCAT+AGG | - | chr4.4:13876171-13876190 | MS.gene09061:intron | 50.0% |
| !! | GAACGTAGTGGGTGCTCATA+GGG | - | chr4.4:13876172-13876191 | MS.gene09061:intron | 50.0% |
| AGGAGCGGGAAGATAAGAGG+GGG | - | chr4.4:13877311-13877330 | MS.gene09061:intron | 55.0% | |
| CCCAATCGAATGGGATGCGT+TGG | + | chr4.4:13877566-13877585 | None:intergenic | 55.0% | |
| GAATGCCCCTCGCTTGTTCA+TGG | + | chr4.4:13878585-13878604 | None:intergenic | 55.0% | |
| GATTCACCAGCAGAGGACGA+TGG | + | chr4.4:13876353-13876372 | None:intergenic | 55.0% | |
| GGCATGTCACCTTGCTAAGC+AGG | - | chr4.4:13877723-13877742 | MS.gene09061:intron | 55.0% | |
| GTGCTCATAGGGCTTCATGG+AGG | - | chr4.4:13876183-13876202 | MS.gene09061:intron | 55.0% | |
| TAACTCCCCTTCTGCTGCAG+TGG | + | chr4.4:13877540-13877559 | None:intergenic | 55.0% | |
| TGGGTGCTCATAGGGCTTCA+TGG | - | chr4.4:13876180-13876199 | MS.gene09061:intron | 55.0% | |
| AACCAACCGACGGGAGCCAA+TGG | - | chr4.4:13877995-13878014 | MS.gene09061:intron | 60.0% | |
| ACCGCTTCCACTGCAGCAGA+AGG | - | chr4.4:13877530-13877549 | MS.gene09061:intron | 60.0% | |
| CCCTTCTGCTGCAGTGGAAG+CGG | + | chr4.4:13877534-13877553 | None:intergenic | 60.0% | |
| CCGCTTCCACTGCAGCAGAA+GGG | - | chr4.4:13877531-13877550 | MS.gene09061:intron | 60.0% | |
| CGCTTCCACTGCAGCAGAAG+GGG | - | chr4.4:13877532-13877551 | MS.gene09061:intron | 60.0% | |
| CTAGCTTGGGGTAGGGCCAT+TGG | + | chr4.4:13878014-13878033 | None:intergenic | 60.0% | |
| ! | AGGCCGGTCTGAGGCCCAAA+TGG | + | chr4.4:13878125-13878144 | None:intergenic | 65.0% |
| !! | GTAGGGCCATTGGCTCCCGT+CGG | + | chr4.4:13878004-13878023 | None:intergenic | 65.0% |
| !! | GGCCATTGGCTCCCGTCGGT+TGG | + | chr4.4:13878000-13878019 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 13875724 | 13878825 | 13875724 | ID=MS.gene09061 |
| chr4.4 | mRNA | 13875724 | 13878825 | 13875724 | ID=MS.gene09061.t1;Parent=MS.gene09061 |
| chr4.4 | exon | 13878753 | 13878825 | 13878753 | ID=MS.gene09061.t1.exon1;Parent=MS.gene09061.t1 |
| chr4.4 | CDS | 13878753 | 13878825 | 13878753 | ID=cds.MS.gene09061.t1;Parent=MS.gene09061.t1 |
| chr4.4 | exon | 13878184 | 13878462 | 13878184 | ID=MS.gene09061.t1.exon2;Parent=MS.gene09061.t1 |
| chr4.4 | CDS | 13878184 | 13878462 | 13878184 | ID=cds.MS.gene09061.t1;Parent=MS.gene09061.t1 |
| chr4.4 | exon | 13878068 | 13878150 | 13878068 | ID=MS.gene09061.t1.exon3;Parent=MS.gene09061.t1 |
| chr4.4 | CDS | 13878068 | 13878150 | 13878068 | ID=cds.MS.gene09061.t1;Parent=MS.gene09061.t1 |
| chr4.4 | exon | 13876910 | 13877019 | 13876910 | ID=MS.gene09061.t1.exon4;Parent=MS.gene09061.t1 |
| chr4.4 | CDS | 13876910 | 13877019 | 13876910 | ID=cds.MS.gene09061.t1;Parent=MS.gene09061.t1 |
| chr4.4 | exon | 13876678 | 13876826 | 13876678 | ID=MS.gene09061.t1.exon5;Parent=MS.gene09061.t1 |
| chr4.4 | CDS | 13876678 | 13876826 | 13876678 | ID=cds.MS.gene09061.t1;Parent=MS.gene09061.t1 |
| chr4.4 | exon | 13875724 | 13875776 | 13875724 | ID=MS.gene09061.t1.exon6;Parent=MS.gene09061.t1 |
| chr4.4 | CDS | 13875724 | 13875776 | 13875724 | ID=cds.MS.gene09061.t1;Parent=MS.gene09061.t1 |
| Gene Sequence |
| Protein sequence |
