Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21142.t1 | XP_003611256.1 | 88.5 | 252 | 15 | 3 | 1 | 239 | 1 | 251 | 5.00E-95 | 357.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21142.t1 | G7KG86 | 88.5 | 252 | 15 | 3 | 1 | 239 | 1 | 251 | 3.6e-95 | 357.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene21142 | 0.824468 | 7.94E-54 | -1.69E-46 |
| MS.gene049217 | MS.gene21142 | 0.817376 | 3.41E-52 | -1.69E-46 |
| MS.gene049222 | MS.gene21142 | 0.804945 | 1.69E-49 | -1.69E-46 |
| MS.gene049285 | MS.gene21142 | 0.809153 | 2.18E-50 | -1.69E-46 |
| MS.gene049351 | MS.gene21142 | 0.80203 | 6.81E-49 | -1.69E-46 |
| MS.gene049427 | MS.gene21142 | 0.810662 | 1.03E-50 | -1.69E-46 |
| MS.gene049609 | MS.gene21142 | 0.817039 | 4.05E-52 | -1.69E-46 |
| MS.gene049805 | MS.gene21142 | 0.816918 | 4.32E-52 | -1.69E-46 |
| MS.gene050076 | MS.gene21142 | 0.810333 | 1.21E-50 | -1.69E-46 |
| MS.gene050163 | MS.gene21142 | 0.815307 | 9.89E-52 | -1.69E-46 |
| MS.gene050333 | MS.gene21142 | 0.824735 | 6.87E-54 | -1.69E-46 |
| MS.gene050432 | MS.gene21142 | 0.817777 | 2.77E-52 | -1.69E-46 |
| MS.gene050670 | MS.gene21142 | 0.824633 | 7.26E-54 | -1.69E-46 |
| MS.gene050767 | MS.gene21142 | 0.857151 | 1.98E-62 | -1.69E-46 |
| MS.gene050770 | MS.gene21142 | 0.858719 | 6.79E-63 | -1.69E-46 |
| MS.gene050772 | MS.gene21142 | 0.82906 | 6.36E-55 | -1.69E-46 |
| MS.gene05080 | MS.gene21142 | 0.812167 | 4.86E-51 | -1.69E-46 |
| MS.gene050812 | MS.gene21142 | 0.830046 | 3.66E-55 | -1.69E-46 |
| MS.gene05100 | MS.gene21142 | 0.802238 | 6.17E-49 | -1.69E-46 |
| MS.gene05101 | MS.gene21142 | 0.811442 | 6.99E-51 | -1.69E-46 |
| MS.gene05105 | MS.gene21142 | 0.85927 | 4.64E-63 | -1.69E-46 |
| MS.gene051228 | MS.gene21142 | 0.817241 | 3.65E-52 | -1.69E-46 |
| MS.gene051387 | MS.gene21142 | 0.815683 | 8.15E-52 | -1.69E-46 |
| MS.gene051471 | MS.gene21142 | 0.817835 | 2.68E-52 | -1.69E-46 |
| MS.gene051666 | MS.gene21142 | 0.827738 | 1.33E-54 | -1.69E-46 |
| MS.gene051858 | MS.gene21142 | 0.8194 | 1.18E-52 | -1.69E-46 |
| MS.gene051949 | MS.gene21142 | 0.811448 | 6.97E-51 | -1.69E-46 |
| MS.gene052078 | MS.gene21142 | 0.832909 | 7.22E-56 | -1.69E-46 |
| MS.gene052188 | MS.gene21142 | 0.817219 | 3.69E-52 | -1.69E-46 |
| MS.gene052271 | MS.gene21142 | 0.82258 | 2.20E-53 | -1.69E-46 |
| MS.gene052290 | MS.gene21142 | 0.827029 | 1.96E-54 | -1.69E-46 |
| MS.gene052310 | MS.gene21142 | 0.844315 | 8.16E-59 | -1.69E-46 |
| MS.gene052379 | MS.gene21142 | 0.834852 | 2.36E-56 | -1.69E-46 |
| MS.gene052421 | MS.gene21142 | 0.834743 | 2.51E-56 | -1.69E-46 |
| MS.gene052615 | MS.gene21142 | 0.804744 | 1.86E-49 | -1.69E-46 |
| MS.gene052767 | MS.gene21142 | 0.818785 | 1.64E-52 | -1.69E-46 |
| MS.gene052870 | MS.gene21142 | 0.804217 | 2.40E-49 | -1.69E-46 |
| MS.gene053009 | MS.gene21142 | 0.852201 | 5.39E-61 | -1.69E-46 |
| MS.gene053103 | MS.gene21142 | 0.831453 | 1.65E-55 | -1.69E-46 |
| MS.gene053104 | MS.gene21142 | 0.817245 | 3.64E-52 | -1.69E-46 |
| MS.gene053207 | MS.gene21142 | 0.807192 | 5.70E-50 | -1.69E-46 |
| MS.gene053322 | MS.gene21142 | 0.85074 | 1.40E-60 | -1.69E-46 |
| MS.gene053632 | MS.gene21142 | 0.838764 | 2.37E-57 | -1.69E-46 |
| MS.gene053915 | MS.gene21142 | 0.813456 | 2.54E-51 | -1.69E-46 |
| MS.gene053916 | MS.gene21142 | 0.833896 | 4.10E-56 | -1.69E-46 |
| MS.gene054376 | MS.gene21142 | 0.844021 | 9.78E-59 | -1.69E-46 |
| MS.gene054642 | MS.gene21142 | 0.815466 | 9.11E-52 | -1.69E-46 |
| MS.gene054802 | MS.gene21142 | 0.840478 | 8.49E-58 | -1.69E-46 |
| MS.gene054803 | MS.gene21142 | 0.84175 | 3.93E-58 | -1.69E-46 |
| MS.gene054804 | MS.gene21142 | 0.842953 | 1.89E-58 | -1.69E-46 |
| MS.gene05505 | MS.gene21142 | 0.844079 | 9.44E-59 | -1.69E-46 |
| MS.gene055206 | MS.gene21142 | 0.823003 | 1.75E-53 | -1.69E-46 |
| MS.gene055254 | MS.gene21142 | 0.825884 | 3.67E-54 | -1.69E-46 |
| MS.gene055397 | MS.gene21142 | 0.851456 | 8.77E-61 | -1.69E-46 |
| MS.gene055412 | MS.gene21142 | 0.814323 | 1.63E-51 | -1.69E-46 |
| MS.gene055499 | MS.gene21142 | 0.825619 | 4.25E-54 | -1.69E-46 |
| MS.gene055722 | MS.gene21142 | 0.811437 | 7.01E-51 | -1.69E-46 |
| MS.gene05592 | MS.gene21142 | 0.836669 | 8.17E-57 | -1.69E-46 |
| MS.gene055941 | MS.gene21142 | 0.801529 | 8.62E-49 | -1.69E-46 |
| MS.gene05602 | MS.gene21142 | 0.818177 | 2.25E-52 | -1.69E-46 |
| MS.gene056407 | MS.gene21142 | 0.821044 | 4.98E-53 | -1.69E-46 |
| MS.gene056449 | MS.gene21142 | 0.830372 | 3.05E-55 | -1.69E-46 |
| MS.gene056609 | MS.gene21142 | 0.811391 | 7.17E-51 | -1.69E-46 |
| MS.gene056903 | MS.gene21142 | 0.841773 | 3.88E-58 | -1.69E-46 |
| MS.gene057011 | MS.gene21142 | 0.832682 | 8.22E-56 | -1.69E-46 |
| MS.gene057076 | MS.gene21142 | 0.812129 | 4.95E-51 | -1.69E-46 |
| MS.gene057123 | MS.gene21142 | 0.808538 | 2.95E-50 | -1.69E-46 |
| MS.gene057129 | MS.gene21142 | 0.855576 | 5.75E-62 | -1.69E-46 |
| MS.gene057146 | MS.gene21142 | 0.844861 | 5.81E-59 | -1.69E-46 |
| MS.gene057416 | MS.gene21142 | 0.830485 | 2.86E-55 | -1.69E-46 |
| MS.gene058019 | MS.gene21142 | 0.819264 | 1.27E-52 | -1.69E-46 |
| MS.gene058082 | MS.gene21142 | 0.801704 | 7.94E-49 | -1.69E-46 |
| MS.gene058233 | MS.gene21142 | 0.80097 | 1.12E-48 | -1.69E-46 |
| MS.gene058293 | MS.gene21142 | 0.868591 | 5.83E-66 | -1.69E-46 |
| MS.gene058365 | MS.gene21142 | 0.809976 | 1.45E-50 | -1.69E-46 |
| MS.gene058419 | MS.gene21142 | 0.818794 | 1.63E-52 | -1.69E-46 |
| MS.gene058660 | MS.gene21142 | 0.835677 | 1.46E-56 | -1.69E-46 |
| MS.gene058723 | MS.gene21142 | 0.813176 | 2.92E-51 | -1.69E-46 |
| MS.gene058993 | MS.gene21142 | 0.820618 | 6.24E-53 | -1.69E-46 |
| MS.gene059029 | MS.gene21142 | 0.829095 | 6.23E-55 | -1.69E-46 |
| MS.gene05934 | MS.gene21142 | 0.816369 | 5.73E-52 | -1.69E-46 |
| MS.gene059536 | MS.gene21142 | 0.80831 | 3.30E-50 | -1.69E-46 |
| MS.gene059676 | MS.gene21142 | 0.849092 | 4.04E-60 | -1.69E-46 |
| MS.gene059677 | MS.gene21142 | 0.809325 | 2.00E-50 | -1.69E-46 |
| MS.gene059688 | MS.gene21142 | 0.828147 | 1.06E-54 | -1.69E-46 |
| MS.gene059692 | MS.gene21142 | 0.836427 | 9.42E-57 | -1.69E-46 |
| MS.gene059695 | MS.gene21142 | 0.841082 | 5.90E-58 | -1.69E-46 |
| MS.gene059718 | MS.gene21142 | 0.824676 | 7.10E-54 | -1.69E-46 |
| MS.gene059902 | MS.gene21142 | 0.821778 | 3.37E-53 | -1.69E-46 |
| MS.gene059960 | MS.gene21142 | 0.889494 | 2.30E-73 | -1.69E-46 |
| MS.gene060804 | MS.gene21142 | 0.805081 | 1.59E-49 | -1.69E-46 |
| MS.gene060818 | MS.gene21142 | 0.826347 | 2.85E-54 | -1.69E-46 |
| MS.gene06090 | MS.gene21142 | 0.813163 | 2.94E-51 | -1.69E-46 |
| MS.gene06092 | MS.gene21142 | 0.816627 | 5.02E-52 | -1.69E-46 |
| MS.gene061041 | MS.gene21142 | 0.82181 | 3.31E-53 | -1.69E-46 |
| MS.gene061150 | MS.gene21142 | 0.832485 | 9.20E-56 | -1.69E-46 |
| MS.gene061200 | MS.gene21142 | 0.865616 | 5.19E-65 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21142.t1 | MTR_5g011990 | 91.270 | 252 | 8 | 3 | 1 | 239 | 1 | 251 | 1.06e-160 | 445 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21142.t1 | AT1G62780 | 63.636 | 242 | 80 | 3 | 1 | 239 | 1 | 237 | 1.59e-104 | 302 |
Find 50 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCTTTGATGTCAAGATTT+TGG | 0.138015 | 5.1:-5416099 | None:intergenic |
| ATGAGGTCTTGTGGAGTATC+AGG | 0.256254 | 5.1:-5415263 | None:intergenic |
| CAAACCTGTTCCTTCTTGTA+TGG | 0.344252 | 5.1:-5415645 | None:intergenic |
| AGAAGTTTGAATGCTACTTC+TGG | 0.364092 | 5.1:+5414413 | MS.gene21142:CDS |
| TTGGCATTAAAATCCGAGTT+AGG | 0.370670 | 5.1:+5415466 | MS.gene21142:CDS |
| CCTAGCAAGGTGGCCAGTAT+TGG | 0.381900 | 5.1:-5414628 | None:intergenic |
| CTAGCAAGGTGGCCAGTATT+GGG | 0.384134 | 5.1:-5414627 | None:intergenic |
| CCAATACTGGCCACCTTGCT+AGG | 0.385665 | 5.1:+5414628 | MS.gene21142:CDS |
| GACGACGTTCTTTCTCTTCA+CGG | 0.402885 | 5.1:-5414713 | None:intergenic |
| GTACTAGGCCGGCCCAATAC+TGG | 0.406350 | 5.1:+5414615 | MS.gene21142:CDS |
| CTGAGCTTGCATCTTATCAT+AGG | 0.423174 | 5.1:-5416051 | None:intergenic |
| CGAGATTAATCGATCATTGT+TGG | 0.431377 | 5.1:+5416252 | MS.gene21142:CDS |
| TAAATGGCTACGCTTAACTT+TGG | 0.446560 | 5.1:+5414377 | None:intergenic |
| AAATCCACTATTGTGTGTAT+TGG | 0.451283 | 5.1:+5414461 | MS.gene21142:CDS |
| TTCAATACAGTTGCTGGAGT+TGG | 0.461932 | 5.1:+5416219 | MS.gene21142:intron |
| CTTACTTGACACTGAGGCTC+AGG | 0.483234 | 5.1:+5415292 | MS.gene21142:CDS |
| TGGACCAATACACACAATAG+TGG | 0.498779 | 5.1:-5414465 | None:intergenic |
| GAAGCAAGCTGCAGAATACA+TGG | 0.509642 | 5.1:+5416600 | MS.gene21142:intron |
| TAGGACCCAGAAGGTGTACT+AGG | 0.511032 | 5.1:+5414600 | MS.gene21142:intron |
| AAGGCCATACAAGAAGGAAC+AGG | 0.513579 | 5.1:+5415641 | MS.gene21142:CDS |
| TTCACGGACTTGACGCTCAA+AGG | 0.514787 | 5.1:-5414697 | None:intergenic |
| ACTATTGTGTGTATTGGTCC+AGG | 0.514965 | 5.1:+5414467 | MS.gene21142:CDS |
| GGAGGATAGATTGACTGAGC+TGG | 0.528319 | 5.1:+5415607 | MS.gene21142:CDS |
| AAGTGCACATGGTGCCAACC+AGG | 0.543322 | 5.1:+5416297 | MS.gene21142:CDS |
| CAAGGTGGCCAGTATTGGGC+CGG | 0.546539 | 5.1:-5414623 | None:intergenic |
| AGCATTCAAACTTCTTGTTG+TGG | 0.561221 | 5.1:-5414405 | None:intergenic |
| ACCCAGAAGGTGTACTAGGC+CGG | 0.561282 | 5.1:+5414604 | MS.gene21142:intron |
| AACCAAAATCTTGACATCAA+AGG | 0.566416 | 5.1:+5416097 | MS.gene21142:CDS |
| AAGTATTCAATGAGGTCTTG+TGG | 0.566777 | 5.1:-5415272 | None:intergenic |
| AAATCGAAGCTGTCCTAACT+CGG | 0.569095 | 5.1:-5415479 | None:intergenic |
| AATACATGGAGAAGCTCCGT+GGG | 0.575310 | 5.1:+5416614 | MS.gene21142:CDS |
| AGCTCAGCTCATAAAAGCCA+AGG | 0.578424 | 5.1:+5416067 | MS.gene21142:CDS |
| TGAGGTCTTGTGGAGTATCA+GGG | 0.585430 | 5.1:-5415262 | None:intergenic |
| TTTCGAAACTTATGGAGCAG+AGG | 0.602773 | 5.1:+5414437 | MS.gene21142:CDS |
| TCTTAAACTCAAGCCTAGCA+AGG | 0.605985 | 5.1:-5414641 | None:intergenic |
| TTAGAGAAGGCCATACAAGA+AGG | 0.624872 | 5.1:+5415635 | MS.gene21142:CDS |
| AAGTAAACTTACATCACGAA+GGG | 0.626470 | 5.1:-5414739 | None:intergenic |
| AAAGTAAACTTACATCACGA+AGG | 0.630395 | 5.1:-5414740 | None:intergenic |
| ATGATTTCTGCAGCTTACGG+AGG | 0.630425 | 5.1:+5415589 | MS.gene21142:intron |
| TGAGCTGGAGGCTTTAGAGA+AGG | 0.633356 | 5.1:+5415622 | MS.gene21142:CDS |
| ATTTGCTGTTAACAAAACGC+AGG | 0.637369 | 5.1:+5415498 | MS.gene21142:CDS |
| GGATAGATTGACTGAGCTGG+AGG | 0.664651 | 5.1:+5415610 | MS.gene21142:CDS |
| GAATACATGGAGAAGCTCCG+TGG | 0.672335 | 5.1:+5416613 | MS.gene21142:CDS |
| AGATTGCAAGAATGAGACCA+CGG | 0.675769 | 5.1:+5415327 | MS.gene21142:CDS |
| TGTCAAGTAAGTATTCAATG+AGG | 0.689411 | 5.1:-5415280 | None:intergenic |
| TGTATTTGAGAACAGCCCCA+CGG | 0.699113 | 5.1:-5416630 | None:intergenic |
| TAAACTCAAGCCTAGCAAGG+TGG | 0.709876 | 5.1:-5414638 | None:intergenic |
| TGAATACTTACTTGACACTG+AGG | 0.714178 | 5.1:+5415286 | MS.gene21142:CDS |
| GAAAACATATCAAGTGCACA+TGG | 0.748043 | 5.1:+5416286 | MS.gene21142:CDS |
| ATACATGGAGAAGCTCCGTG+GGG | 0.765327 | 5.1:+5416615 | MS.gene21142:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAATTTAGAGATTAAAT+TGG | + | chr5.1:5415104-5415123 | MS.gene21142:intron | 10.0% |
| !! | TTGATATATTAACAATTTGA+AGG | + | chr5.1:5415879-5415898 | MS.gene21142:intron | 15.0% |
| !! | ACTAAGCAAATGAAAAATAA+CGG | - | chr5.1:5415232-5415251 | None:intergenic | 20.0% |
| !! | CAATCTTAAATTTAATAGCA+TGG | - | chr5.1:5415051-5415070 | None:intergenic | 20.0% |
| !! | CACTAGAATAATTTATTCAA+TGG | - | chr5.1:5415550-5415569 | None:intergenic | 20.0% |
| !! | TACAATTTCATGAACTAAAT+TGG | - | chr5.1:5415700-5415719 | None:intergenic | 20.0% |
| !!! | AACTTTTATGTTTCTAGTTT+CGG | - | chr5.1:5416467-5416486 | None:intergenic | 20.0% |
| !!! | AATTTAGTTCATGAAATTGT+AGG | + | chr5.1:5415699-5415718 | MS.gene21142:intron | 20.0% |
| !!! | ATTTAGTTCATGAAATTGTA+GGG | + | chr5.1:5415700-5415719 | MS.gene21142:intron | 20.0% |
| !!! | ATTTTCAATCAATAAAGAGT+TGG | - | chr5.1:5414557-5414576 | None:intergenic | 20.0% |
| !!! | GATTAGAGTAATAATCATTT+TGG | - | chr5.1:5414989-5415008 | None:intergenic | 20.0% |
| !!! | GTGAAATTTTCTTAATTTCA+AGG | - | chr5.1:5415741-5415760 | None:intergenic | 20.0% |
| !!! | TAGCCTTTATTATTTTATGA+CGG | + | chr5.1:5415192-5415211 | MS.gene21142:intron | 20.0% |
| !!! | TTCTTTATAGTTGATAGTAT+CGG | + | chr5.1:5416156-5416175 | MS.gene21142:intron | 20.0% |
| ! | AAATTGGCTATTTGATCAAT+TGG | + | chr5.1:5415936-5415955 | MS.gene21142:intron | 25.0% |
| ! | AATGAGTTAAAGATTATAGC+TGG | - | chr5.1:5416411-5416430 | None:intergenic | 25.0% |
| ! | AATTGATCAAATAGCCAATT+TGG | - | chr5.1:5415937-5415956 | None:intergenic | 25.0% |
| ! | ATTGATTGATTGATTGATGT+AGG | + | chr5.1:5414581-5414600 | MS.gene21142:intron | 25.0% |
| ! | ATTTAGAGATTAAATTGGAG+AGG | + | chr5.1:5415109-5415128 | MS.gene21142:intron | 25.0% |
| ! | CAGAAATCATCATTGTAAAA+AGG | - | chr5.1:5415579-5415598 | None:intergenic | 25.0% |
| ! | CATGTTCAGTAAATTAAATC+TGG | - | chr5.1:5416498-5416517 | None:intergenic | 25.0% |
| ! | GAACCGTCATAAAATAATAA+AGG | - | chr5.1:5415198-5415217 | None:intergenic | 25.0% |
| ! | GAATAAATTATTCTAGTGTC+TGG | + | chr5.1:5415552-5415571 | MS.gene21142:intron | 25.0% |
| ! | TCTTAAATTTAATAGCATGG+TGG | - | chr5.1:5415048-5415067 | None:intergenic | 25.0% |
| ! | TTAATATATCAAAACAGTCC+TGG | - | chr5.1:5415871-5415890 | None:intergenic | 25.0% |
| ! | TTTAGAGATTAAATTGGAGA+GGG | + | chr5.1:5415110-5415129 | MS.gene21142:intron | 25.0% |
| ! | TTTGATACTTTCAAAGACTA+TGG | + | chr5.1:5414938-5414957 | MS.gene21142:intron | 25.0% |
| !! | ATTAAACGACGAATTCTTTT+TGG | + | chr5.1:5415447-5415466 | MS.gene21142:CDS | 25.0% |
| !! | CAGATTTAATTTACTGAACA+TGG | + | chr5.1:5416496-5416515 | MS.gene21142:intron | 25.0% |
| !! | CATTCAATTGATATTTTACC+TGG | - | chr5.1:5416318-5416337 | None:intergenic | 25.0% |
| !! | GTGTGTTTTCTTAGTAATTT+TGG | + | chr5.1:5414842-5414861 | MS.gene21142:intron | 25.0% |
| !! | TGATATGTTTTCATCAAGAA+GGG | - | chr5.1:5416278-5416297 | None:intergenic | 25.0% |
| !! | TGATTGAGAATTTTCAAATC+CGG | - | chr5.1:5415772-5415791 | None:intergenic | 25.0% |
| !! | TTGATATGTTTTCATCAAGA+AGG | - | chr5.1:5416279-5416298 | None:intergenic | 25.0% |
| !! | TTTAAGATTGTAGTTCTGTT+AGG | + | chr5.1:5415061-5415080 | MS.gene21142:intron | 25.0% |
| AAAGTAAACTTACATCACGA+AGG | - | chr5.1:5414743-5414762 | None:intergenic | 30.0% | |
| AAATCCACTATTGTGTGTAT+TGG | + | chr5.1:5414461-5414480 | MS.gene21142:CDS | 30.0% | |
| AACCAAAATCTTGACATCAA+AGG | + | chr5.1:5416097-5416116 | MS.gene21142:CDS | 30.0% | |
| AAGTAAACTTACATCACGAA+GGG | - | chr5.1:5414742-5414761 | None:intergenic | 30.0% | |
| GAAAATTTCACAATGATCTC+CGG | + | chr5.1:5415750-5415769 | MS.gene21142:intron | 30.0% | |
| TGTCAAGTAAGTATTCAATG+AGG | - | chr5.1:5415283-5415302 | None:intergenic | 30.0% | |
| TTTATCTTCAATACAGTTGC+TGG | + | chr5.1:5416213-5416232 | MS.gene21142:intron | 30.0% | |
| TTTGAACATAACAGAACTTG+TGG | + | chr5.1:5416525-5416544 | MS.gene21142:intron | 30.0% | |
| ! | ACTTCTGTTCTAGTTAAACT+AGG | + | chr5.1:5416185-5416204 | MS.gene21142:intron | 30.0% |
| ! | ATCAGTGATTTTCAATATCC+AGG | + | chr5.1:5415850-5415869 | MS.gene21142:intron | 30.0% |
| ! | ATCCTTTGATGTCAAGATTT+TGG | - | chr5.1:5416102-5416121 | None:intergenic | 30.0% |
| ! | CAATTGATATTTTACCTGGT+TGG | - | chr5.1:5416314-5416333 | None:intergenic | 30.0% |
| ! | TTTTGGTCTCTAAATATTCG+AGG | - | chr5.1:5414972-5414991 | None:intergenic | 30.0% |
| !!! | GGAATTGTCAATTTTGAAAC+AGG | + | chr5.1:5416369-5416388 | MS.gene21142:intron | 30.0% |
| !!! | TTGATGTCAAGATTTTGGTT+AGG | - | chr5.1:5416097-5416116 | None:intergenic | 30.0% |
| AAGGAACAGGTTTGTGAAAA+TGG | + | chr5.1:5415654-5415673 | MS.gene21142:intron | 35.0% | |
| AAGTATTCAATGAGGTCTTG+TGG | - | chr5.1:5415275-5415294 | None:intergenic | 35.0% | |
| AATTGGCGATTCACTCTATT+CGG | - | chr5.1:5415683-5415702 | None:intergenic | 35.0% | |
| AGATTATAGCTGGATGATAC+TGG | - | chr5.1:5416401-5416420 | None:intergenic | 35.0% | |
| AGCATTCAAACTTCTTGTTG+TGG | - | chr5.1:5414408-5414427 | None:intergenic | 35.0% | |
| AGTTAAGTTACCCAATCAAC+AGG | - | chr5.1:5414503-5414522 | None:intergenic | 35.0% | |
| ATGATGATTTCTGCAGCTTA+CGG | + | chr5.1:5415586-5415605 | MS.gene21142:intron | 35.0% | |
| ATTTGGTCCTTGAAATGGTA+CGG | - | chr5.1:5415920-5415939 | None:intergenic | 35.0% | |
| CGAGATTAATCGATCATTGT+TGG | + | chr5.1:5416252-5416271 | MS.gene21142:CDS | 35.0% | |
| GAAAACATATCAAGTGCACA+TGG | + | chr5.1:5416286-5416305 | MS.gene21142:CDS | 35.0% | |
| TACCATTTCAAGGACCAAAT+TGG | + | chr5.1:5415920-5415939 | MS.gene21142:intron | 35.0% | |
| TGAATACTTACTTGACACTG+AGG | + | chr5.1:5415286-5415305 | MS.gene21142:CDS | 35.0% | |
| TTGGCATTAAAATCCGAGTT+AGG | + | chr5.1:5415466-5415485 | MS.gene21142:CDS | 35.0% | |
| ! | AGAAGTTTGAATGCTACTTC+TGG | + | chr5.1:5414413-5414432 | MS.gene21142:CDS | 35.0% |
| ! | AGGTATCTGACTCTTTTTGT+TGG | + | chr5.1:5415518-5415537 | MS.gene21142:intron | 35.0% |
| !! | AAATATGCTGTGCTCTAAGA+AGG | - | chr5.1:5416436-5416455 | None:intergenic | 35.0% |
| !! | AATATGCTGTGCTCTAAGAA+GGG | - | chr5.1:5416435-5416454 | None:intergenic | 35.0% |
| !! | ATTTGCTGTTAACAAAACGC+AGG | + | chr5.1:5415498-5415517 | MS.gene21142:CDS | 35.0% |
| !!! | CTTCTGGTTTTCGAAACTTA+TGG | + | chr5.1:5414429-5414448 | MS.gene21142:CDS | 35.0% |
| !!! | GATTTTGGTTAGGTTTTCCT+TGG | - | chr5.1:5416087-5416106 | None:intergenic | 35.0% |
| AAATCGAAGCTGTCCTAACT+CGG | - | chr5.1:5415482-5415501 | None:intergenic | 40.0% | |
| ACAATTCCACACACAGATTC+TGG | - | chr5.1:5416357-5416376 | None:intergenic | 40.0% | |
| AGATTGCAAGAATGAGACCA+CGG | + | chr5.1:5415327-5415346 | MS.gene21142:CDS | 40.0% | |
| AGCCAATTTGGTCCTTGAAA+TGG | - | chr5.1:5415925-5415944 | None:intergenic | 40.0% | |
| AGGCATCTGCATAAGCAAAT+GGG | - | chr5.1:5416034-5416053 | None:intergenic | 40.0% | |
| CAAACCTGTTCCTTCTTGTA+TGG | - | chr5.1:5415648-5415667 | None:intergenic | 40.0% | |
| CACACACAGATTCTGGTAAT+CGG | - | chr5.1:5416350-5416369 | None:intergenic | 40.0% | |
| CTGAGCTTGCATCTTATCAT+AGG | - | chr5.1:5416054-5416073 | None:intergenic | 40.0% | |
| TAGGCATCTGCATAAGCAAA+TGG | - | chr5.1:5416035-5416054 | None:intergenic | 40.0% | |
| TCTTAAACTCAAGCCTAGCA+AGG | - | chr5.1:5414644-5414663 | None:intergenic | 40.0% | |
| TGGACCAATACACACAATAG+TGG | - | chr5.1:5414468-5414487 | None:intergenic | 40.0% | |
| TTAGAGAAGGCCATACAAGA+AGG | + | chr5.1:5415635-5415654 | MS.gene21142:CDS | 40.0% | |
| TTCAATACAGTTGCTGGAGT+TGG | + | chr5.1:5416219-5416238 | MS.gene21142:intron | 40.0% | |
| TTCATGAAATTGTAGGGTGC+TGG | + | chr5.1:5415706-5415725 | MS.gene21142:intron | 40.0% | |
| TTTCGAAACTTATGGAGCAG+AGG | + | chr5.1:5414437-5414456 | MS.gene21142:CDS | 40.0% | |
| ! | ACTATTGTGTGTATTGGTCC+AGG | + | chr5.1:5414467-5414486 | MS.gene21142:CDS | 40.0% |
| ! | TCCTATTGGTCCTGTTGATT+GGG | + | chr5.1:5414490-5414509 | MS.gene21142:intron | 40.0% |
| !! | TTGAAAAGTACTACGAACCG+TGG | - | chr5.1:5415347-5415366 | None:intergenic | 40.0% |
| AAGGCCATACAAGAAGGAAC+AGG | + | chr5.1:5415641-5415660 | MS.gene21142:CDS | 45.0% | |
| AATACATGGAGAAGCTCCGT+GGG | + | chr5.1:5416614-5416633 | MS.gene21142:CDS | 45.0% | |
| ACCCAATCAACAGGACCAAT+AGG | - | chr5.1:5414494-5414513 | None:intergenic | 45.0% | |
| AGCTCAGCTCATAAAAGCCA+AGG | + | chr5.1:5416067-5416086 | MS.gene21142:CDS | 45.0% | |
| ATGATTTCTGCAGCTTACGG+AGG | + | chr5.1:5415589-5415608 | MS.gene21142:intron | 45.0% | |
| ATGCAAGCTTACTCCTTGCT+CGG | + | chr5.1:5416003-5416022 | MS.gene21142:intron | 45.0% | |
| CGATTACCAGAATCTGTGTG+TGG | + | chr5.1:5416348-5416367 | MS.gene21142:intron | 45.0% | |
| GAAGCAAGCTGCAGAATACA+TGG | + | chr5.1:5416600-5416619 | MS.gene21142:intron | 45.0% | |
| GACGACGTTCTTTCTCTTCA+CGG | - | chr5.1:5414716-5414735 | None:intergenic | 45.0% | |
| GTCCTATTGGTCCTGTTGAT+TGG | + | chr5.1:5414489-5414508 | MS.gene21142:intron | 45.0% | |
| TAAACTCAAGCCTAGCAAGG+TGG | - | chr5.1:5414641-5414660 | None:intergenic | 45.0% | |
| TGATTGATGTAGGACCCAGA+AGG | + | chr5.1:5414591-5414610 | MS.gene21142:intron | 45.0% | |
| TGTATTTGAGAACAGCCCCA+CGG | - | chr5.1:5416633-5416652 | None:intergenic | 45.0% | |
| ! | ATGAGGTCTTGTGGAGTATC+AGG | - | chr5.1:5415266-5415285 | None:intergenic | 45.0% |
| ! | TGAGGTCTTGTGGAGTATCA+GGG | - | chr5.1:5415265-5415284 | None:intergenic | 45.0% |
| ! | TGTATTGGTCCAGGTCCTAT+TGG | + | chr5.1:5414476-5414495 | MS.gene21142:intron | 45.0% |
| ATACATGGAGAAGCTCCGTG+GGG | + | chr5.1:5416615-5416634 | MS.gene21142:CDS | 50.0% | |
| CTAGCAAGGTGGCCAGTATT+GGG | - | chr5.1:5414630-5414649 | None:intergenic | 50.0% | |
| CTTACTTGACACTGAGGCTC+AGG | + | chr5.1:5415292-5415311 | MS.gene21142:CDS | 50.0% | |
| GAATACATGGAGAAGCTCCG+TGG | + | chr5.1:5416613-5416632 | MS.gene21142:CDS | 50.0% | |
| GGAGGATAGATTGACTGAGC+TGG | + | chr5.1:5415607-5415626 | MS.gene21142:CDS | 50.0% | |
| GGATAGATTGACTGAGCTGG+AGG | + | chr5.1:5415610-5415629 | MS.gene21142:CDS | 50.0% | |
| GTCGACACCGTACCATTTCA+AGG | + | chr5.1:5415910-5415929 | MS.gene21142:intron | 50.0% | |
| TCAACAGGACCAATAGGACC+TGG | - | chr5.1:5414488-5414507 | None:intergenic | 50.0% | |
| TTCACGGACTTGACGCTCAA+AGG | - | chr5.1:5414700-5414719 | None:intergenic | 50.0% | |
| ! | TAGGACCCAGAAGGTGTACT+AGG | + | chr5.1:5414600-5414619 | MS.gene21142:intron | 50.0% |
| ! | TGCAGCTTGCTTCTGCAACA+AGG | - | chr5.1:5416593-5416612 | None:intergenic | 50.0% |
| ! | TTGGAGAGGGCGTGAAACTT+TGG | + | chr5.1:5415123-5415142 | MS.gene21142:intron | 50.0% |
| !! | TGAGCTGGAGGCTTTAGAGA+AGG | + | chr5.1:5415622-5415641 | MS.gene21142:CDS | 50.0% |
| CAAATGGGAGCAACCGAGCA+AGG | - | chr5.1:5416019-5416038 | None:intergenic | 55.0% | |
| CCAATACTGGCCACCTTGCT+AGG | + | chr5.1:5414628-5414647 | MS.gene21142:CDS | 55.0% | |
| CCTAGCAAGGTGGCCAGTAT+TGG | - | chr5.1:5414631-5414650 | None:intergenic | 55.0% | |
| ! | AAGTGCACATGGTGCCAACC+AGG | + | chr5.1:5416297-5416316 | MS.gene21142:CDS | 55.0% |
| ! | ACCCAGAAGGTGTACTAGGC+CGG | + | chr5.1:5414604-5414623 | MS.gene21142:intron | 55.0% |
| GCCGGCCTAGTACACCTTCT+GGG | - | chr5.1:5414608-5414627 | None:intergenic | 60.0% | |
| GTACTAGGCCGGCCCAATAC+TGG | + | chr5.1:5414615-5414634 | MS.gene21142:CDS | 60.0% | |
| ! | CAAGGTGGCCAGTATTGGGC+CGG | - | chr5.1:5414626-5414645 | None:intergenic | 60.0% |
| GGCCGGCCTAGTACACCTTC+TGG | - | chr5.1:5414609-5414628 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 5414380 | 5416663 | 5414380 | ID=MS.gene21142 |
| chr5.1 | mRNA | 5414380 | 5416663 | 5414380 | ID=MS.gene21142.t1;Parent=MS.gene21142 |
| chr5.1 | exon | 5414380 | 5414488 | 5414380 | ID=MS.gene21142.t1.exon1;Parent=MS.gene21142.t1 |
| chr5.1 | CDS | 5414380 | 5414488 | 5414380 | ID=cds.MS.gene21142.t1;Parent=MS.gene21142.t1 |
| chr5.1 | exon | 5414610 | 5414749 | 5414610 | ID=MS.gene21142.t1.exon2;Parent=MS.gene21142.t1 |
| chr5.1 | CDS | 5414610 | 5414749 | 5414610 | ID=cds.MS.gene21142.t1;Parent=MS.gene21142.t1 |
| chr5.1 | exon | 5415251 | 5415348 | 5415251 | ID=MS.gene21142.t1.exon3;Parent=MS.gene21142.t1 |
| chr5.1 | CDS | 5415251 | 5415348 | 5415251 | ID=cds.MS.gene21142.t1;Parent=MS.gene21142.t1 |
| chr5.1 | exon | 5415447 | 5415519 | 5415447 | ID=MS.gene21142.t1.exon4;Parent=MS.gene21142.t1 |
| chr5.1 | CDS | 5415447 | 5415519 | 5415447 | ID=cds.MS.gene21142.t1;Parent=MS.gene21142.t1 |
| chr5.1 | exon | 5415602 | 5415662 | 5415602 | ID=MS.gene21142.t1.exon5;Parent=MS.gene21142.t1 |
| chr5.1 | CDS | 5415602 | 5415662 | 5415602 | ID=cds.MS.gene21142.t1;Parent=MS.gene21142.t1 |
| chr5.1 | exon | 5416048 | 5416133 | 5416048 | ID=MS.gene21142.t1.exon6;Parent=MS.gene21142.t1 |
| chr5.1 | CDS | 5416048 | 5416133 | 5416048 | ID=cds.MS.gene21142.t1;Parent=MS.gene21142.t1 |
| chr5.1 | exon | 5416229 | 5416318 | 5416229 | ID=MS.gene21142.t1.exon7;Parent=MS.gene21142.t1 |
| chr5.1 | CDS | 5416229 | 5416318 | 5416229 | ID=cds.MS.gene21142.t1;Parent=MS.gene21142.t1 |
| chr5.1 | exon | 5416601 | 5416663 | 5416601 | ID=MS.gene21142.t1.exon8;Parent=MS.gene21142.t1 |
| chr5.1 | CDS | 5416601 | 5416663 | 5416601 | ID=cds.MS.gene21142.t1;Parent=MS.gene21142.t1 |
| Gene Sequence |
| Protein sequence |
