AlfalfaGEDB | MS.gene22793

M. sativa cultivar XinJiangDaYe / MS.gene22793

KEGG: K10268
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF12799.10 PF13516.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22793.t1	XP_003626195.1	98.3	640	11	0	1	640	40	679	7.60E-191	677.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22793.t1	Q8RWU5	34.4	163	100	3	10	169	16	174	1.2e-14	83.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22793.t1	G7KWK1	98.3	640	11	0	1	640	40	679	5.5e-191	677.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene22793	0.824262	8.88E-54	-1.69E-46
MS.gene04918	MS.gene22793	0.820751	5.81E-53	-1.69E-46
MS.gene04919	MS.gene22793	0.805014	1.64E-49	-1.69E-46
MS.gene04920	MS.gene22793	0.822298	2.55E-53	-1.69E-46
MS.gene049283	MS.gene22793	0.85401	1.64E-61	-1.69E-46
MS.gene049368	MS.gene22793	0.83979	1.28E-57	-1.69E-46
MS.gene049499	MS.gene22793	0.831559	1.56E-55	-1.69E-46
MS.gene049983	MS.gene22793	0.86978	2.39E-66	-1.69E-46
MS.gene050085	MS.gene22793	0.80938	1.95E-50	-1.69E-46
MS.gene050213	MS.gene22793	0.837848	4.08E-57	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene22793	MS.gene61203	PPI
MS.gene22793	MS.gene61229	PPI
MS.gene22793	MS.gene36290	PPI
MS.gene89105	MS.gene22793	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22793.t1	MTR_7g112570	98.594	640	9	0	1	640	40	679	0.0	1253
MS.gene22793.t1	MTR_7g112570	98.217	561	10	0	1	561	40	600	0.0	1095
MS.gene22793.t1	MTR_7g112570	27.423	423	249	5	237	605	149	567	1.12e-31	130
MS.gene22793.t1	MTR_7g112570	98.039	561	11	0	1	561	40	600	0.0	1094
MS.gene22793.t1	MTR_7g112570	27.423	423	249	5	237	605	149	567	9.79e-32	131
MS.gene22793.t1	MTR_4g013255	40.094	641	368	8	7	639	14	646	7.17e-135	410
MS.gene22793.t1	MTR_2g021030	29.741	464	319	7	158	616	127	588	2.49e-44	167
MS.gene22793.t1	MTR_2g021030	27.800	500	324	8	55	549	132	599	8.37e-38	149
MS.gene22793.t1	MTR_2g021030	24.214	318	197	6	35	321	297	601	1.96e-11	67.4
MS.gene22793.t1	MTR_1g012520	28.884	457	286	15	145	575	163	606	2.82e-29	123

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22793.t1	AT5G27920	57.344	640	270	3	3	640	4	642	0.0	656
MS.gene22793.t1	AT5G01720	40.345	637	369	7	7	639	13	642	4.96e-123	379
MS.gene22793.t1	AT4G15475	29.399	466	318	8	158	616	127	588	1.41e-43	166
MS.gene22793.t1	AT4G15475	26.923	598	380	13	10	554	11	604	6.09e-40	155
MS.gene22793.t1	AT4G15475	25.436	401	218	7	272	593	116	514	3.93e-23	104
MS.gene22793.t1	AT5G23340	27.273	429	244	12	10	427	10	381	4.10e-28	117
MS.gene22793.t1	AT5G23340	29.104	268	157	7	289	551	91	330	4.73e-19	90.5
MS.gene22793.t1	AT5G23340	29.596	223	152	5	388	605	85	307	2.34e-16	82.0
MS.gene22793.t1	AT5G23340	34.132	167	102	3	393	551	58	224	1.21e-14	77.0
MS.gene22793.t1	AT2G25490	27.962	422	248	11	158	560	190	574	5.62e-28	119

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Find 143 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGATGTCCACTACTCA+AGG	0.592117	7.3:-4102471	MS.gene22793:intron
AAACATATCAGACATAGGAT+TGG	0.583300	7.3:-4101551	MS.gene22793:CDS
AAACTTGTAAGATTGAAGTT+AGG	0.368296	7.3:-4101583	MS.gene22793:CDS
AACGAGGGTGCAAGGTCAGA+TGG	0.489471	7.3:-4099828	MS.gene22793:CDS
AACTTCAGACTTGCAAGGTT+TGG	0.334817	7.3:+4101842	None:intergenic
AACTTGATCCAATCTGATAC+AGG	0.498440	7.3:+4101789	None:intergenic
AAGTGAGTAAGAATTCAATC+CGG	0.590350	7.3:+4103555	None:intergenic
AATCCATGAACGAGGGTGCA+AGG	0.578850	7.3:-4099836	MS.gene22793:CDS
AATTGACGGTGTTCGAGTTT+CGG	0.311508	7.3:-4102050	MS.gene22793:CDS
AATTGCAGCTGTGTACGCAT+AGG	0.603745	7.3:-4101384	MS.gene22793:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACATATCAGACATAGGAT+TGG	-	chr7.3:4101975-4101994	MS.gene22793:CDS	30.0%
AAGCGTATTGTCATTGAAAT+AGG	+	chr7.3:4100825-4100844	None:intergenic	30.0%
AAGTGAGTAAGAATTCAATC+CGG	+	chr7.3:4099974-4099993	None:intergenic	30.0%
ACTGGTATCTGATATACTTA+CGG	+	chr7.3:4101837-4101856	None:intergenic	30.0%
CATTAAAATTGTAGACAAGG+TGG	-	chr7.3:4102087-4102106	MS.gene22793:CDS	30.0%
CTTAGAAAGTAACAAATCCA+AGG	+	chr7.3:4102557-4102576	None:intergenic	30.0%
CTTGGTTTAAGCAAATGTAT+TGG	-	chr7.3:4101546-4101565	MS.gene22793:CDS	30.0%
GATAGTATTACAGTGTACTT+GGG	+	chr7.3:4100692-4100711	None:intergenic	30.0%
GGCTTATTATCAGTAATTAG+TGG	-	chr7.3:4101246-4101265	MS.gene22793:CDS	30.0%
GTCTAAAAAAATGTCACCTT+TGG	-	chr7.3:4100618-4100637	MS.gene22793:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	4099822	4103726	4099822	ID=MS.gene22793
chr7.3	mRNA	4099822	4103726	4099822	ID=MS.gene22793.t1;Parent=MS.gene22793
chr7.3	exon	4103103	4103726	4103103	ID=MS.gene22793.t1.exon1;Parent=MS.gene22793.t1
chr7.3	CDS	4103103	4103726	4103103	ID=cds.MS.gene22793.t1;Parent=MS.gene22793.t1
chr7.3	exon	4102472	4102597	4102472	ID=MS.gene22793.t1.exon2;Parent=MS.gene22793.t1
chr7.3	CDS	4102472	4102597	4102472	ID=cds.MS.gene22793.t1;Parent=MS.gene22793.t1
chr7.3	exon	4102237	4102341	4102237	ID=MS.gene22793.t1.exon3;Parent=MS.gene22793.t1
chr7.3	CDS	4102237	4102341	4102237	ID=cds.MS.gene22793.t1;Parent=MS.gene22793.t1
chr7.3	exon	4101735	4102131	4101735	ID=MS.gene22793.t1.exon4;Parent=MS.gene22793.t1
chr7.3	CDS	4101735	4102131	4101735	ID=cds.MS.gene22793.t1;Parent=MS.gene22793.t1
chr7.3	exon	4101502	4101631	4101502	ID=MS.gene22793.t1.exon5;Parent=MS.gene22793.t1
chr7.3	CDS	4101502	4101631	4101502	ID=cds.MS.gene22793.t1;Parent=MS.gene22793.t1
chr7.3	exon	4101104	4101398	4101104	ID=MS.gene22793.t1.exon6;Parent=MS.gene22793.t1
chr7.3	CDS	4101104	4101398	4101104	ID=cds.MS.gene22793.t1;Parent=MS.gene22793.t1
chr7.3	exon	4099822	4100067	4099822	ID=MS.gene22793.t1.exon7;Parent=MS.gene22793.t1
chr7.3	CDS	4099822	4100067	4099822	ID=cds.MS.gene22793.t1;Parent=MS.gene22793.t1

Gene Sequence

>MS.gene22793

ATGTTGTCTGAATCGGTATTCTGTCACTTGACAGAGGATTTACTTATCAGAGTTTTGGATAAACTTGATTCAGATCGTAAATCTTTTCGATTAGTATGCAAGGAGTTTCTCCGGGTCGAATCAACAACCCGGAAAACCATTCGGATTCTCCGGATTGAATTCTTACTCACTTTGCTTCAAAAGTATCAACACATTGAATCACTTGATCTTTCCGTTTGTCCATGGATCGAGGATGGAGCAGTATCGACTTTACTGAACCATTGGTCATCGAGTTGGACTCTGGGAATCAAGAGATTGATACTGAGTCGAGTTACCGGGTTAGGGTACGTTGGGTTGGAGATGTTGATTAAGGCTTGTCCGTTGTTGGAAGCGGTTGATGTTTCCCATTGTTGGGGTTTTGGTGATAGAGAGGCTGCTGCGTTATCGTGCGGTGGGAAGTTGAAGGAGATTAATATTGATAAGTGTTTAGGAGTTACTGATATTGGGTTGGCCAAGATTGCTGTTGGGTGTAGTAAGTTGGAGAAGTTGAGTTTGAAATGGTGTTTGGAGATTTCTGATCTTGGGATTGATCTTCTTTCTAAGAAGTGCTTCGAGTTGAAGTTTCTCGATGTTTCCTATCTCAAGGTTTGTTACTCATTTGATTTGTATGAACTATGCACTATGGTGTGAAGTTATTATTTTACACATGCGTTAGTGTGTCGCCACATTGTCATATCCATATCCATTAATTTAATGATGTGGCAAGACATGATTGAATTCTGCTTAAACTAACTTTACACAATCTGCAAACATATTTGTCTAAAAAAATGTCACCTTTGGTTTTTGACTAGAAGTGATGTAAAGTAGTTTTTGCATTTCGGTCATTTGCCCAAGTACACTGTAATACTATCATTTGAATGACATTCTCTAATTATTTCATGCTTAAAGAGTATTCGTAAAGAAATATATGTGGTAATAATGCTTATGGCGATTTACCGTTCTTATCGCTTGCCAACAGGAGCCTATTTCAATGACAATACGCTTTTCTGTTTTACATTATCACCTTGCTCGGTAATAAACATGCTTGATTAAGTTTGAGTTATTGTTTCTTCAGATAATATTTTAAATTATTGACATCTTACATCATTAGGTTACCAACGAATCTTTACGATCAATAGCTTCTTTGTTAAAGCTCGAAGTTTTCATTATGGTGGGATGCTATTTAGTGGATGATGTGGGGTTGCAGTTTCTTGAAAAAGGATGTCCACTACTCAAGGTACTTTTCTATTCAAATGTTATAAACTGTGACATGACTTCAAAATTAATAAAGTTTGACCAAGGTGGTTTTGTGGAGTTTGAGCATAAACACAAATTTCTTTAGCAGTTGTTCTTTTAATGTGTTGCAGGCAATTGATGTATCAAGGTGTAACTGCGTTAGCCCATCCGGCTTATTATCAGTAATTAGTGGACATGAGGGTCTTGAGCAGATCAATGCAGGACACTGCCTCTCAGTGAGTTTTTATCTAAAGTTTTGGTGTATATATTTGATTCTGCACCTTATTTTACTGTTATAAGTATGATATAGACTAATACTGTTCCTCGGGCATTTTCTGAAGGAGCTTTCAGCACCTCTCACTAACGGCTTGAAGAATTTAAAGCACTTGAGCGTAATTAGAATTGACGGTGTTCGAGTTTCGGACTTTATCCTCCAGATCATCGGCTCCAATTGCAAATCTTTAGTCAAACTTGGTTTAAGCAAATGTATTGGGGTGACCAACTTGGGGATTATGCAGGTAGTAGGTTGTTGCAATTTGACGACACTTGATTTGACTTGTTGTCGTTTTGTCACTGATGCAGCCATCTCTACTATAGCAAACTCTTGTCCAAACCTTGCAAGTCTGAAGTTAGAGTCTTGTGATATGGTTACTGAGATTGGCCTGTATCAGATTGGATCAAGTTGCTTGATGCTTGAAGAGCTTGACCTTACTGACTGTTCTGGCGTAAATGACATAGGTAAAATATTGATGTTTTATCCGTAAGTATATCAGATACCAGTCTTGTATAAAATTGATGATGGTTCCGATTATTTTATCTCCAACATTCTGTCTTCGTGCAGCACTGAAATATTTATCAAGATGTTCAAAACTTGTAAGATTGAAGTTAGGATTATGCACAAACATATCAGACATAGGATTGGCGCACATTGCTTGTAACTGCCCAAAATTGACCGAACTTGACCTCTATCGGTAATTGAACTTTAGTCAACGTGGTTAAATGTTTATGATTCATTAAAATTGTAGACAAGGTGGTGAACCTGTTTTGTTCATTCTGTTTTTTTTTAAATTGCAGCTGTGTACGCATAGGAGATGATGGGCTAGCAGCACTCACAACCGGATGCAACAAGTTGGCCATGCTCAACCTAGCATATTGCAATAGGATTACAGACGCAGGGTTGAAGTGTATCAGCAATCTCGGTGAACTCTCTGATTTTGAGTTGCGTGGGCTTTCAAACATCACGAGCATTGGTATAAAAGCAGTTGCAGTCAGTTGCAAGAGATTGGCTAATTTAGATTTGAAGCATTGCGAAAAACTTGATGATACGGGTTTTCGGGCACTTGCTTTTTATTCACAAAACCTACTGCAGGTCAGTGGTATCAGCTTTACTCGATTACACCTTCTAAAAGAAAAGTATGTCCAACAATCATCATCCTATAAAAATTGAATATATGCCTCAAGGAACATAATTGACACTACCTTGGATTTGTTACTTTCTAAGGTGTATATTGTTTTATAGTTCAACCTGATTGAAAAATTTATAGCCACGGTCTTCCAAAGGCGAAGAACCCTAGTTTGTGTCTTGTTTGGGTTCACTGCTCTTCTTTCCTCGTCTGTATTTAAATGTACCACTTCTCTATGCATGGGTTCGAATATTTGCACGTTTAATTTGTGTGTTGTATAATTTTCTTGTCCTTTGCTGTCACAAGTTTAACTTATCTTCTGCGTTTGACCTGAAGACAAATAAAAGCACAGTAGTTTCTTTATTCTAGCACATCTATCTTGCTCTTATGCTGCTTCATTTTGAAATAACATGTAAAGCTGGATGTTGAAGATAATGTCTTTTGCATAAAAGATTTTATCCAAAAGAAAAACGAAAGAAAGAACATTTGTTGAAAAAAAAAATCACATTTGCACAACTATTGACTGGATACCAATATCATATCATTTTGTTCTTTATAAATCGGAGATACATGCAATAAATCATATTCTGTTCTTTATTAATCTGTTGTCTAAATCCGTTTCTCATATTATGATATTACAATTTCCAACTCTTATTCTTGCATTCTCATAGAAGGTGGTGCTTCTTACTTGCTTCACCGAATAATCTAAGGTGGTGCTTCTTACTTGCTTCATCGAATAATCTTTTAAAACTTTTCAAAATTGACAGTCTACACTCTTGATAAACCAAACTGGAAACGGCTTTTATATTGGCGTCTCATATTGTTATATACTTGAAAAAGTGAGCGTCTATTTATATTTTGTAGGAGCACATATGTTAATTTTCGTTCAAATAGGTTATTCATTTGCATTTATTAATTACATAGAGACATCTTATAATGATGCAATCAATGTTATGTATTAGGAGTTCAAGTTCTAACTCAACGTAGTTATGATGATTGCAGATAAATATGAGCTACTGTAACGTGTCAGATCATGTGTTGTGGCTGCTTATGAGTAACCTGAAGCGCCTCCAGGATGCAAAACTTGTGTATCTTGTTAATGTCACCATACAAGGATTGGAGCTTGCCCTTATATCTTGTTGTGGTCGGATTAAAAAGGTCAAACTGCAACGTTCTCTCGAGTTTTCAATATCCTCAGAAATACTCGAAACAATCCATGAACGAGGGTGCAAGGTCAGATGGGATTAG

Protein sequence

>MS.gene22793.t1

MLSESVFCHLTEDLLIRVLDKLDSDRKSFRLVCKEFLRVESTTRKTIRILRIEFLLTLLQKYQHIESLDLSVCPWIEDGAVSTLLNHWSSSWTLGIKRLILSRVTGLGYVGLEMLIKACPLLEAVDVSHCWGFGDREAAALSCGGKLKEINIDKCLGVTDIGLAKIAVGCSKLEKLSLKWCLEISDLGIDLLSKKCFELKFLDVSYLKVTNESLRSIASLLKLEVFIMVGCYLVDDVGLQFLEKGCPLLKAIDVSRCNCVSPSGLLSVISGHEGLEQINAGHCLSELSAPLTNGLKNLKHLSVIRIDGVRVSDFILQIIGSNCKSLVKLGLSKCIGVTNLGIMQVVGCCNLTTLDLTCCRFVTDAAISTIANSCPNLASLKLESCDMVTEIGLYQIGSSCLMLEELDLTDCSGVNDIALKYLSRCSKLVRLKLGLCTNISDIGLAHIACNCPKLTELDLYRCVRIGDDGLAALTTGCNKLAMLNLAYCNRITDAGLKCISNLGELSDFELRGLSNITSIGIKAVAVSCKRLANLDLKHCEKLDDTGFRALAFYSQNLLQINMSYCNVSDHVLWLLMSNLKRLQDAKLVYLVNVTIQGLELALISCCGRIKKVKLQRSLEFSISSEILETIHERGCKVRWD