Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28288.t1 | XP_003594155.1 | 95 | 317 | 16 | 0 | 1 | 317 | 1 | 317 | 5.90E-160 | 573.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28288.t1 | O99019 | 67.0 | 327 | 93 | 7 | 1 | 315 | 1 | 324 | 1.2e-105 | 384.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28288.t1 | Q2HTH4 | 95.0 | 317 | 16 | 0 | 1 | 317 | 1 | 317 | 4.2e-160 | 573.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene28288 | 0.850416 | 1.72E-60 | -1.69E-46 |
| MS.gene049251 | MS.gene28288 | -0.810743 | 9.90E-51 | -1.69E-46 |
| MS.gene049633 | MS.gene28288 | 0.863353 | 2.65E-64 | -1.69E-46 |
| MS.gene050170 | MS.gene28288 | 0.848336 | 6.54E-60 | -1.69E-46 |
| MS.gene050323 | MS.gene28288 | 0.843491 | 1.36E-58 | -1.69E-46 |
| MS.gene050338 | MS.gene28288 | -0.802556 | 5.31E-49 | -1.69E-46 |
| MS.gene050444 | MS.gene28288 | 0.83687 | 7.26E-57 | -1.69E-46 |
| MS.gene050553 | MS.gene28288 | 0.817995 | 2.47E-52 | -1.69E-46 |
| MS.gene050577 | MS.gene28288 | 0.815147 | 1.07E-51 | -1.69E-46 |
| MS.gene050612 | MS.gene28288 | 0.81167 | 6.23E-51 | -1.69E-46 |
| MS.gene05080 | MS.gene28288 | 0.851851 | 6.78E-61 | -1.69E-46 |
| MS.gene05081 | MS.gene28288 | 0.847975 | 8.23E-60 | -1.69E-46 |
| MS.gene050868 | MS.gene28288 | 0.844489 | 7.33E-59 | -1.69E-46 |
| MS.gene050871 | MS.gene28288 | 0.841182 | 5.55E-58 | -1.69E-46 |
| MS.gene050875 | MS.gene28288 | -0.806544 | 7.81E-50 | -1.69E-46 |
| MS.gene050904 | MS.gene28288 | 0.83925 | 1.77E-57 | -1.69E-46 |
| MS.gene051317 | MS.gene28288 | 0.847747 | 9.51E-60 | -1.69E-46 |
| MS.gene051651 | MS.gene28288 | -0.801162 | 1.03E-48 | -1.69E-46 |
| MS.gene051838 | MS.gene28288 | 0.891135 | 5.24E-74 | -1.69E-46 |
| MS.gene051874 | MS.gene28288 | 0.809282 | 2.04E-50 | -1.69E-46 |
| MS.gene051914 | MS.gene28288 | -0.831454 | 1.65E-55 | -1.69E-46 |
| MS.gene052100 | MS.gene28288 | 0.807745 | 4.35E-50 | -1.69E-46 |
| MS.gene052129 | MS.gene28288 | -0.805647 | 1.21E-49 | -1.69E-46 |
| MS.gene052308 | MS.gene28288 | -0.807597 | 4.68E-50 | -1.69E-46 |
| MS.gene052503 | MS.gene28288 | 0.811428 | 7.04E-51 | -1.69E-46 |
| MS.gene052506 | MS.gene28288 | 0.817047 | 4.04E-52 | -1.69E-46 |
| MS.gene052820 | MS.gene28288 | 0.801097 | 1.06E-48 | -1.69E-46 |
| MS.gene052822 | MS.gene28288 | 0.81322 | 2.86E-51 | -1.69E-46 |
| MS.gene052823 | MS.gene28288 | 0.803488 | 3.40E-49 | -1.69E-46 |
| MS.gene052825 | MS.gene28288 | 0.809378 | 1.95E-50 | -1.69E-46 |
| MS.gene052870 | MS.gene28288 | 0.807905 | 4.02E-50 | -1.69E-46 |
| MS.gene052872 | MS.gene28288 | 0.818415 | 1.98E-52 | -1.69E-46 |
| MS.gene052966 | MS.gene28288 | 0.817678 | 2.91E-52 | -1.69E-46 |
| MS.gene053108 | MS.gene28288 | -0.805716 | 1.17E-49 | -1.69E-46 |
| MS.gene053203 | MS.gene28288 | 0.8237 | 1.20E-53 | -1.69E-46 |
| MS.gene053479 | MS.gene28288 | 0.821812 | 3.31E-53 | -1.69E-46 |
| MS.gene053480 | MS.gene28288 | 0.821405 | 4.11E-53 | -1.69E-46 |
| MS.gene053824 | MS.gene28288 | 0.847882 | 8.73E-60 | -1.69E-46 |
| MS.gene053916 | MS.gene28288 | 0.807242 | 5.56E-50 | -1.69E-46 |
| MS.gene054344 | MS.gene28288 | 0.821942 | 3.09E-53 | -1.69E-46 |
| MS.gene054595 | MS.gene28288 | 0.80272 | 4.91E-49 | -1.69E-46 |
| MS.gene054633 | MS.gene28288 | -0.853547 | 2.22E-61 | -1.69E-46 |
| MS.gene054706 | MS.gene28288 | -0.80223 | 6.19E-49 | -1.69E-46 |
| MS.gene05470 | MS.gene28288 | 0.83785 | 4.08E-57 | -1.69E-46 |
| MS.gene054884 | MS.gene28288 | -0.822094 | 2.85E-53 | -1.69E-46 |
| MS.gene054941 | MS.gene28288 | -0.813151 | 2.96E-51 | -1.69E-46 |
| MS.gene05494 | MS.gene28288 | 0.811355 | 7.30E-51 | -1.69E-46 |
| MS.gene055206 | MS.gene28288 | 0.813478 | 2.51E-51 | -1.69E-46 |
| MS.gene055224 | MS.gene28288 | 0.804665 | 1.94E-49 | -1.69E-46 |
| MS.gene055382 | MS.gene28288 | -0.807005 | 6.24E-50 | -1.69E-46 |
| MS.gene055502 | MS.gene28288 | 0.817924 | 2.56E-52 | -1.69E-46 |
| MS.gene055577 | MS.gene28288 | 0.821083 | 4.87E-53 | -1.69E-46 |
| MS.gene055616 | MS.gene28288 | -0.830323 | 3.13E-55 | -1.69E-46 |
| MS.gene055731 | MS.gene28288 | -0.800389 | 1.47E-48 | -1.69E-46 |
| MS.gene055748 | MS.gene28288 | 0.858364 | 8.67E-63 | -1.69E-46 |
| MS.gene055750 | MS.gene28288 | 0.825051 | 5.79E-54 | -1.69E-46 |
| MS.gene055751 | MS.gene28288 | 0.851458 | 8.76E-61 | -1.69E-46 |
| MS.gene05589 | MS.gene28288 | 0.861706 | 8.50E-64 | -1.69E-46 |
| MS.gene055941 | MS.gene28288 | 0.815991 | 6.96E-52 | -1.69E-46 |
| MS.gene056266 | MS.gene28288 | 0.83109 | 2.03E-55 | -1.69E-46 |
| MS.gene056387 | MS.gene28288 | 0.835855 | 1.32E-56 | -1.69E-46 |
| MS.gene056504 | MS.gene28288 | 0.82515 | 5.48E-54 | -1.69E-46 |
| MS.gene056510 | MS.gene28288 | 0.824977 | 6.02E-54 | -1.69E-46 |
| MS.gene05652 | MS.gene28288 | -0.814785 | 1.29E-51 | -1.69E-46 |
| MS.gene056618 | MS.gene28288 | -0.824318 | 8.61E-54 | -1.69E-46 |
| MS.gene056678 | MS.gene28288 | -0.809351 | 1.98E-50 | -1.69E-46 |
| MS.gene056694 | MS.gene28288 | -0.811097 | 8.30E-51 | -1.69E-46 |
| MS.gene056697 | MS.gene28288 | -0.804909 | 1.72E-49 | -1.69E-46 |
| MS.gene057086 | MS.gene28288 | 0.817639 | 2.97E-52 | -1.69E-46 |
| MS.gene057658 | MS.gene28288 | 0.806131 | 9.55E-50 | -1.69E-46 |
| MS.gene057856 | MS.gene28288 | 0.801395 | 9.19E-49 | -1.69E-46 |
| MS.gene058128 | MS.gene28288 | -0.816815 | 4.55E-52 | -1.69E-46 |
| MS.gene058334 | MS.gene28288 | -0.82893 | 6.84E-55 | -1.69E-46 |
| MS.gene058338 | MS.gene28288 | 0.803563 | 3.28E-49 | -1.69E-46 |
| MS.gene05837 | MS.gene28288 | 0.816485 | 5.40E-52 | -1.69E-46 |
| MS.gene058382 | MS.gene28288 | -0.801751 | 7.77E-49 | -1.69E-46 |
| MS.gene058418 | MS.gene28288 | -0.816733 | 4.75E-52 | -1.69E-46 |
| MS.gene058544 | MS.gene28288 | 0.808597 | 2.86E-50 | -1.69E-46 |
| MS.gene058838 | MS.gene28288 | 0.855256 | 7.13E-62 | -1.69E-46 |
| MS.gene058853 | MS.gene28288 | -0.829318 | 5.50E-55 | -1.69E-46 |
| MS.gene059023 | MS.gene28288 | 0.857616 | 1.45E-62 | -1.69E-46 |
| MS.gene05914 | MS.gene28288 | 0.814061 | 1.87E-51 | -1.69E-46 |
| MS.gene05926 | MS.gene28288 | -0.828732 | 7.63E-55 | -1.69E-46 |
| MS.gene05960 | MS.gene28288 | -0.806178 | 9.33E-50 | -1.69E-46 |
| MS.gene059667 | MS.gene28288 | 0.818469 | 1.93E-52 | -1.69E-46 |
| MS.gene059703 | MS.gene28288 | -0.801804 | 7.57E-49 | -1.69E-46 |
| MS.gene059717 | MS.gene28288 | 0.816531 | 5.27E-52 | -1.69E-46 |
| MS.gene059865 | MS.gene28288 | 0.811255 | 7.67E-51 | -1.69E-46 |
| MS.gene06000 | MS.gene28288 | 0.822606 | 2.17E-53 | -1.69E-46 |
| MS.gene06027 | MS.gene28288 | 0.807615 | 4.63E-50 | -1.69E-46 |
| MS.gene060762 | MS.gene28288 | 0.835224 | 1.90E-56 | -1.69E-46 |
| MS.gene06092 | MS.gene28288 | 0.807021 | 6.19E-50 | -1.69E-46 |
| MS.gene060982 | MS.gene28288 | 0.844342 | 8.02E-59 | -1.69E-46 |
| MS.gene061044 | MS.gene28288 | -0.852664 | 3.98E-61 | -1.69E-46 |
| MS.gene061150 | MS.gene28288 | 0.804974 | 1.67E-49 | -1.69E-46 |
| MS.gene061231 | MS.gene28288 | 0.802222 | 6.21E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28288.t1 | MTR_2g025050 | 94.953 | 317 | 16 | 0 | 1 | 317 | 1 | 317 | 0.0 | 575 |
| MS.gene28288.t1 | MTR_2g025040 | 85.000 | 320 | 41 | 2 | 1 | 317 | 1 | 316 | 1.09e-178 | 496 |
| MS.gene28288.t1 | MTR_1g099880 | 76.923 | 143 | 21 | 2 | 56 | 198 | 3 | 133 | 3.13e-65 | 204 |
| MS.gene28288.t1 | MTR_5g029590 | 46.415 | 265 | 130 | 3 | 62 | 315 | 91 | 354 | 2.48e-60 | 196 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28288.t1 | AT4G04020 | 70.111 | 271 | 71 | 3 | 52 | 315 | 49 | 316 | 1.15e-128 | 370 |
| MS.gene28288.t1 | AT4G22240 | 68.459 | 279 | 76 | 4 | 41 | 315 | 38 | 308 | 2.11e-127 | 366 |
| MS.gene28288.t1 | AT2G35490 | 48.425 | 254 | 128 | 3 | 62 | 315 | 124 | 374 | 6.98e-76 | 237 |
Find 84 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGCCTTGAGTTTGCTTAA+TGG | 0.209190 | 2.1:+64716706 | MS.gene28288:CDS |
| TGAGTTTGCTTAATGGAAAA+TGG | 0.213813 | 2.1:+64716713 | MS.gene28288:CDS |
| TGGACTTCGAACTTCAAATT+TGG | 0.214207 | 2.1:-64717588 | None:intergenic |
| TGAGCGTTGTCGTTGGAAAT+TGG | 0.261986 | 2.1:-64718364 | None:intergenic |
| CAAAACTCTGTTCTGTTTGC+TGG | 0.306297 | 2.1:+64717533 | MS.gene28288:CDS |
| CGCAGGTATACATCCTTTGC+CGG | 0.306305 | 2.1:+64717422 | MS.gene28288:intron |
| TGAGGCGGGCGGTGTATGTT+CGG | 0.309347 | 2.1:+64716452 | MS.gene28288:CDS |
| AAATTTGGCATTGGTACTAA+TGG | 0.316715 | 2.1:-64717573 | None:intergenic |
| GTGGAGTTGAGAGAGGTTAC+TGG | 0.345185 | 2.1:-64716349 | None:intergenic |
| CAGCAAACAGAACAGAGTTT+TGG | 0.351113 | 2.1:-64717532 | None:intergenic |
| TCGAAGTCCAAATCGTTTGC+AGG | 0.366646 | 2.1:+64717601 | MS.gene28288:CDS |
| GAGCGTTGTCGTTGGAAATT+GGG | 0.370330 | 2.1:-64718363 | None:intergenic |
| GGGCAAACCTGCAAACGATT+TGG | 0.373512 | 2.1:-64717608 | None:intergenic |
| CGACCGATGAGGCAGTGTTT+TGG | 0.375094 | 2.1:-64718306 | None:intergenic |
| TTCTGCTGGCGTCGCGGTTG+CGG | 0.388728 | 2.1:+64716510 | MS.gene28288:CDS |
| GAGGCGGGCGGTGTATGTTC+GGG | 0.431419 | 2.1:+64716453 | MS.gene28288:CDS |
| GATCTTCAACGGAGGCTGAT+TGG | 0.433255 | 2.1:-64718341 | None:intergenic |
| TGGGGTCCAGAGCCTTCTGC+TGG | 0.436696 | 2.1:+64716496 | MS.gene28288:CDS |
| AAGTTTGAGGAAGGTGTCAT+AGG | 0.451543 | 2.1:+64718184 | MS.gene28288:CDS |
| TTGGTTGAGGTTTGAGAGAG+AGG | 0.455247 | 2.1:-64716305 | None:intergenic |
| GGGTGTTTGTGTGGAGAAGT+TGG | 0.455512 | 2.1:-64716324 | None:intergenic |
| TGTTATTCAGATCAAGTTTG+AGG | 0.467097 | 2.1:+64718171 | MS.gene28288:intron |
| TTGTGTGGAGAAGTTGGTTG+AGG | 0.470556 | 2.1:-64716318 | None:intergenic |
| GGCATCAGTAGAAGCGGGTG+TGG | 0.486342 | 2.1:-64716689 | None:intergenic |
| CCAACGACAACGCTCAATCA+TGG | 0.486944 | 2.1:+64718371 | MS.gene28288:CDS |
| TAGTGTGTTTGTTCTTATCA+AGG | 0.491603 | 2.1:+64718447 | MS.gene28288:CDS |
| TGAAGGTGTGGAGTTGAGAG+AGG | 0.491712 | 2.1:-64716356 | None:intergenic |
| CGAAAGCAATGGAAATAAAC+CGG | 0.492898 | 2.1:-64717441 | None:intergenic |
| GCGACGCCAGCAGAAGGCTC+TGG | 0.497720 | 2.1:-64716502 | None:intergenic |
| AAACCATCGGCCAACACAAT+CGG | 0.499127 | 2.1:-64716430 | None:intergenic |
| TCTCCATCGACCATCACATT+CGG | 0.499490 | 2.1:+64716382 | MS.gene28288:CDS |
| GTTGAGAGAGGTTACTGGAA+GGG | 0.505605 | 2.1:-64716344 | None:intergenic |
| TCGAACTTCAAATTTGGCAT+TGG | 0.506203 | 2.1:-64717582 | None:intergenic |
| TGCTGGCGTCGCGGTTGCGG+AGG | 0.508923 | 2.1:+64716513 | MS.gene28288:CDS |
| ATGAAGAACTACGCGTCTCA+AGG | 0.510954 | 2.1:+64718413 | MS.gene28288:CDS |
| TTGTGTTGGCCGATGGTTTG+AGG | 0.521688 | 2.1:+64716434 | MS.gene28288:CDS |
| AGACCGATTGTGTTGGCCGA+TGG | 0.523427 | 2.1:+64716427 | MS.gene28288:CDS |
| TGTCCAAAACACTGCCTCAT+CGG | 0.527517 | 2.1:+64718303 | MS.gene28288:CDS |
| ATTTCTTCAACTGTAAGTAA+TGG | 0.527551 | 2.1:-64717476 | None:intergenic |
| GTTGGCCGATGGTTTGAGGC+GGG | 0.530141 | 2.1:+64716438 | MS.gene28288:CDS |
| TAATACAAATGATGATGAGT+GGG | 0.532459 | 2.1:+64716477 | MS.gene28288:CDS |
| GGCATTGGTACTAATGGAGG+TGG | 0.532928 | 2.1:-64717567 | None:intergenic |
| ATTGATCTCTCGCCTTTCAA+AGG | 0.534065 | 2.1:+64718268 | MS.gene28288:CDS |
| AAACCGAATGTGATGGTCGA+TGG | 0.540447 | 2.1:-64716385 | None:intergenic |
| TGAAGAACTACGCGTCTCAA+GGG | 0.546646 | 2.1:+64718414 | MS.gene28288:CDS |
| CACCGCCCGCCTCAAACCAT+CGG | 0.549599 | 2.1:-64716443 | None:intergenic |
| ATTCAGATCAAGTTTGAGGA+AGG | 0.553801 | 2.1:+64718175 | MS.gene28288:intron |
| GCAACCGCGACGCCAGCAGA+AGG | 0.556346 | 2.1:-64716508 | None:intergenic |
| AGACGCGTAGTTCTTCATCA+AGG | 0.563282 | 2.1:-64718408 | None:intergenic |
| CTCAAGGCATCAGTAGAAGC+GGG | 0.563935 | 2.1:-64716694 | None:intergenic |
| CCATGATTGAGCGTTGTCGT+TGG | 0.564294 | 2.1:-64718371 | None:intergenic |
| TGAGACGGAGAAGCTGAAGA+AGG | 0.565823 | 2.1:+64716564 | MS.gene28288:CDS |
| TTGGAAATTGGGATCTTCAA+CGG | 0.565875 | 2.1:-64718352 | None:intergenic |
| GTGTTTGTTCTTATCAAGGA+AGG | 0.566267 | 2.1:+64718451 | MS.gene28288:CDS |
| GAAATTGGGATCTTCAACGG+AGG | 0.567708 | 2.1:-64718349 | None:intergenic |
| CTACGCGTCTCAAGGGGTGA+TGG | 0.568415 | 2.1:+64718421 | MS.gene28288:CDS |
| TTTGGCATTGGTACTAATGG+AGG | 0.570777 | 2.1:-64717570 | None:intergenic |
| AAGCTGAAGAAGGCGTTGGT+TGG | 0.574482 | 2.1:+64716574 | MS.gene28288:CDS |
| CAATGGAAATAAACCGGCAA+AGG | 0.577508 | 2.1:-64717435 | None:intergenic |
| GAAGTAAGTATGCCTTTGAA+AGG | 0.579660 | 2.1:-64718280 | None:intergenic |
| TTACTGGAAGGGTGTTTGTG+TGG | 0.583482 | 2.1:-64716333 | None:intergenic |
| AGTAGTCCGCTCGAAAGCAA+TGG | 0.587994 | 2.1:-64717452 | None:intergenic |
| AGTTGAGAGAGGTTACTGGA+AGG | 0.592004 | 2.1:-64716345 | None:intergenic |
| TCTAACGAGTCTGTGAGTTG+TGG | 0.593065 | 2.1:-64718211 | None:intergenic |
| ATGGTCGATGGAGAAGTTGA+AGG | 0.593319 | 2.1:-64716373 | None:intergenic |
| GGAGAAGCTGAAGAAGGCGT+TGG | 0.597030 | 2.1:+64716570 | MS.gene28288:CDS |
| CGATGGAGAAGTTGAAGGTG+TGG | 0.601344 | 2.1:-64716368 | None:intergenic |
| CGCGTCTCAAGGGGTGATGG+TGG | 0.610242 | 2.1:+64718424 | MS.gene28288:CDS |
| ACTCAAGGCATCAGTAGAAG+CGG | 0.610668 | 2.1:-64716695 | None:intergenic |
| CTAATGGAGGTGGTAGACAA+TGG | 0.616798 | 2.1:-64717557 | None:intergenic |
| GCATCAGTAGAAGCGGGTGT+GGG | 0.625232 | 2.1:-64716688 | None:intergenic |
| GGCCGATGGTTTGAGGCGGG+CGG | 0.626348 | 2.1:+64716441 | MS.gene28288:CDS |
| CTAATACAAATGATGATGAG+TGG | 0.629749 | 2.1:+64716476 | MS.gene28288:CDS |
| GCTCAGAAAACCGAATGTGA+TGG | 0.633469 | 2.1:-64716392 | None:intergenic |
| TGTCAGAAGACCGATTGTGT+TGG | 0.635862 | 2.1:+64716420 | MS.gene28288:CDS |
| TTATTTCCATTGCTTTCGAG+CGG | 0.638687 | 2.1:+64717446 | MS.gene28288:CDS |
| GAAGAACTACGCGTCTCAAG+GGG | 0.644186 | 2.1:+64718415 | MS.gene28288:CDS |
| AGAGCCTTCTGCTGGCGTCG+CGG | 0.645840 | 2.1:+64716504 | MS.gene28288:CDS |
| AATTGTTTGCACGACCGATG+AGG | 0.652679 | 2.1:-64718317 | None:intergenic |
| GAAAGAGACTGAGAAAGTGA+CGG | 0.653391 | 2.1:+64716537 | MS.gene28288:CDS |
| GAAAGTGACGGATAGTGAGA+CGG | 0.661870 | 2.1:+64716549 | MS.gene28288:CDS |
| TGTTGGCCGATGGTTTGAGG+CGG | 0.676008 | 2.1:+64716437 | MS.gene28288:CDS |
| GTTAGAGATACCAGAAAACG+TGG | 0.687929 | 2.1:+64718228 | MS.gene28288:CDS |
| AATACAAATGATGATGAGTG+GGG | 0.724716 | 2.1:+64716478 | MS.gene28288:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTTTAATTTTAATATT+TGG | + | chr2.1:64716753-64716772 | MS.gene28288:intron | 0.0% |
| !!! | ACATTTTATAAAAAAAATAC+AGG | - | chr2.1:64717140-64717159 | None:intergenic | 10.0% |
| !! | AAAAATACTAATAGAAAAGA+AGG | - | chr2.1:64717639-64717658 | None:intergenic | 15.0% |
| !! | ACTTATTACTAAACTATAAA+AGG | - | chr2.1:64717825-64717844 | None:intergenic | 15.0% |
| !! | TGATGGTTTAAAAATTAAAT+CGG | - | chr2.1:64716871-64716890 | None:intergenic | 15.0% |
| !!! | AGAAATTTTAAATATCAGTT+AGG | + | chr2.1:64717995-64718014 | MS.gene28288:intron | 15.0% |
| !!! | TTCAAGTTAACATTAATAAT+AGG | - | chr2.1:64717242-64717261 | None:intergenic | 15.0% |
| !! | AAATAAAAAATATGGAGATG+CGG | + | chr2.1:64717010-64717029 | MS.gene28288:intron | 20.0% |
| !! | AAATAGTTCAAATTTCAAAC+AGG | - | chr2.1:64716844-64716863 | None:intergenic | 20.0% |
| !! | ATGTTAGATGAATATAGTAA+TGG | + | chr2.1:64716807-64716826 | MS.gene28288:intron | 20.0% |
| !! | TCAATCAAAGTCAAATTATT+TGG | - | chr2.1:64717768-64717787 | None:intergenic | 20.0% |
| !! | TGTCAAATATTAGTATAATG+AGG | + | chr2.1:64717897-64717916 | MS.gene28288:intron | 20.0% |
| ! | AATAAAAAATATGGAGATGC+GGG | + | chr2.1:64717011-64717030 | MS.gene28288:intron | 25.0% |
| ! | ATGTTTCAACAAATATGAGT+TGG | + | chr2.1:64717111-64717130 | MS.gene28288:intron | 25.0% |
| ! | ATTTCTTCAACTGTAAGTAA+TGG | - | chr2.1:64717479-64717498 | None:intergenic | 25.0% |
| ! | CTAAACTATAAAAGGAAAAC+AGG | - | chr2.1:64717817-64717836 | None:intergenic | 25.0% |
| ! | CTGATAAACTATTTCAATCA+AGG | + | chr2.1:64717727-64717746 | MS.gene28288:intron | 25.0% |
| ! | TATCAGTTAGGTTAGTATTA+TGG | + | chr2.1:64718007-64718026 | MS.gene28288:intron | 25.0% |
| ! | TCAAAATTCATTCAACATGA+TGG | - | chr2.1:64716888-64716907 | None:intergenic | 25.0% |
| !! | AACTCATATTTGTTGAAACA+TGG | - | chr2.1:64717112-64717131 | None:intergenic | 25.0% |
| !! | TAATACAAATGATGATGAGT+GGG | + | chr2.1:64716477-64716496 | MS.gene28288:CDS | 25.0% |
| !!! | CATATTTTTATTGCTAGCAA+TGG | + | chr2.1:64717173-64717192 | MS.gene28288:intron | 25.0% |
| AACTATAAAAGGAAAACAGG+TGG | - | chr2.1:64717814-64717833 | None:intergenic | 30.0% | |
| ACAGTGCTAGTTAACAATAA+TGG | + | chr2.1:64717345-64717364 | MS.gene28288:intron | 30.0% | |
| ATAAAAAATATGGAGATGCG+GGG | + | chr2.1:64717012-64717031 | MS.gene28288:intron | 30.0% | |
| CCAATAGCTTAAATCATGAT+AGG | - | chr2.1:64718139-64718158 | None:intergenic | 30.0% | |
| CCTATCATGATTTAAGCTAT+TGG | + | chr2.1:64718136-64718155 | MS.gene28288:intron | 30.0% | |
| TAAAATTGCATCACATGTGA+TGG | + | chr2.1:64717266-64717285 | MS.gene28288:intron | 30.0% | |
| TAATAGAAAAGAAGGAGCAA+GGG | - | chr2.1:64717631-64717650 | None:intergenic | 30.0% | |
| TAGTGTGTTTGTTCTTATCA+AGG | + | chr2.1:64718447-64718466 | MS.gene28288:CDS | 30.0% | |
| TGTTATTCAGATCAAGTTTG+AGG | + | chr2.1:64718171-64718190 | MS.gene28288:intron | 30.0% | |
| ! | AATACAAATGATGATGAGTG+GGG | + | chr2.1:64716478-64716497 | MS.gene28288:CDS | 30.0% |
| ! | CTAATACAAATGATGATGAG+TGG | + | chr2.1:64716476-64716495 | MS.gene28288:CDS | 30.0% |
| ! | TGAGTTTGCTTAATGGAAAA+TGG | + | chr2.1:64716713-64716732 | MS.gene28288:CDS | 30.0% |
| ! | TTTTCCATTAAGCAAACTCA+AGG | - | chr2.1:64716713-64716732 | None:intergenic | 30.0% |
| !! | AAATTTGGCATTGGTACTAA+TGG | - | chr2.1:64717576-64717595 | None:intergenic | 30.0% |
| !! | TAAACTCATGGTTTGATTTG+TGG | + | chr2.1:64717396-64717415 | MS.gene28288:intron | 30.0% |
| !! | TATTTTTATACTTCACCCTC+CGG | + | chr2.1:64717652-64717671 | MS.gene28288:intron | 30.0% |
| ATTCAGATCAAGTTTGAGGA+AGG | + | chr2.1:64718175-64718194 | MS.gene28288:intron | 35.0% | |
| CGAAAGCAATGGAAATAAAC+CGG | - | chr2.1:64717444-64717463 | None:intergenic | 35.0% | |
| CTAATAGAAAAGAAGGAGCA+AGG | - | chr2.1:64717632-64717651 | None:intergenic | 35.0% | |
| GAAGTAAGTATGCCTTTGAA+AGG | - | chr2.1:64718283-64718302 | None:intergenic | 35.0% | |
| GGTTAGGAGAGAAATGATTA+CGG | + | chr2.1:64717673-64717692 | MS.gene28288:intron | 35.0% | |
| GTAATCATTTCTCTCCTAAC+CGG | - | chr2.1:64717674-64717693 | None:intergenic | 35.0% | |
| GTGTTTGTTCTTATCAAGGA+AGG | + | chr2.1:64718451-64718470 | MS.gene28288:CDS | 35.0% | |
| TCGAACTTCAAATTTGGCAT+TGG | - | chr2.1:64717585-64717604 | None:intergenic | 35.0% | |
| TGGACTTCGAACTTCAAATT+TGG | - | chr2.1:64717591-64717610 | None:intergenic | 35.0% | |
| TGTCAGAAGCAGATTTATTC+TGG | - | chr2.1:64717328-64717347 | None:intergenic | 35.0% | |
| TTATTTCCATTGCTTTCGAG+CGG | + | chr2.1:64717446-64717465 | MS.gene28288:CDS | 35.0% | |
| TTCTGCAGCTAATAAACTCA+TGG | + | chr2.1:64717384-64717403 | MS.gene28288:intron | 35.0% | |
| TTGGAAATTGGGATCTTCAA+CGG | - | chr2.1:64718355-64718374 | None:intergenic | 35.0% | |
| TTTGTACCTCTTGTTACCAT+TGG | - | chr2.1:64717292-64717311 | None:intergenic | 35.0% | |
| ! | ACCAGAAAACGTGGAATTTT+TGG | + | chr2.1:64718237-64718256 | MS.gene28288:CDS | 35.0% |
| ! | AGCAATGGTTTGTGTTTCTA+AGG | + | chr2.1:64717188-64717207 | MS.gene28288:intron | 35.0% |
| ! | CAGAAAACGTGGAATTTTTG+GGG | + | chr2.1:64718239-64718258 | MS.gene28288:CDS | 35.0% |
| ! | CCAGAAAACGTGGAATTTTT+GGG | + | chr2.1:64718238-64718257 | MS.gene28288:CDS | 35.0% |
| AACATGGAAGACGTCAACAA+TGG | - | chr2.1:64717096-64717115 | None:intergenic | 40.0% | |
| ACATGGAAGACGTCAACAAT+GGG | - | chr2.1:64717095-64717114 | None:intergenic | 40.0% | |
| ATTGATCTCTCGCCTTTCAA+AGG | + | chr2.1:64718268-64718287 | MS.gene28288:CDS | 40.0% | |
| CAAAACTCTGTTCTGTTTGC+TGG | + | chr2.1:64717533-64717552 | MS.gene28288:CDS | 40.0% | |
| CAATGGAAATAAACCGGCAA+AGG | - | chr2.1:64717438-64717457 | None:intergenic | 40.0% | |
| GAAAGAGACTGAGAAAGTGA+CGG | + | chr2.1:64716537-64716556 | MS.gene28288:CDS | 40.0% | |
| GTTAGAGATACCAGAAAACG+TGG | + | chr2.1:64718228-64718247 | MS.gene28288:CDS | 40.0% | |
| ! | CAGCAAACAGAACAGAGTTT+TGG | - | chr2.1:64717535-64717554 | None:intergenic | 40.0% |
| ! | CCCAAAAATTCCACGTTTTC+TGG | - | chr2.1:64718241-64718260 | None:intergenic | 40.0% |
| ! | GATGCCTTGAGTTTGCTTAA+TGG | + | chr2.1:64716706-64716725 | MS.gene28288:CDS | 40.0% |
| !! | AAGTTTGAGGAAGGTGTCAT+AGG | + | chr2.1:64718184-64718203 | MS.gene28288:CDS | 40.0% |
| !! | TTTGGCATTGGTACTAATGG+AGG | - | chr2.1:64717573-64717592 | None:intergenic | 40.0% |
| !!! | CGTTGGTTGGTTCGTTTTAT+GGG | + | chr2.1:64716587-64716606 | MS.gene28288:CDS | 40.0% |
| AAACCATCGGCCAACACAAT+CGG | - | chr2.1:64716433-64716452 | None:intergenic | 45.0% | |
| AAACCGAATGTGATGGTCGA+TGG | - | chr2.1:64716388-64716407 | None:intergenic | 45.0% | |
| AATTGTTTGCACGACCGATG+AGG | - | chr2.1:64718320-64718339 | None:intergenic | 45.0% | |
| AGACGCGTAGTTCTTCATCA+AGG | - | chr2.1:64718411-64718430 | None:intergenic | 45.0% | |
| AGTTGAGAGAGGTTACTGGA+AGG | - | chr2.1:64716348-64716367 | None:intergenic | 45.0% | |
| ATCATTTCTCTCCTAACCGG+AGG | - | chr2.1:64717671-64717690 | None:intergenic | 45.0% | |
| ATGAAGAACTACGCGTCTCA+AGG | + | chr2.1:64718413-64718432 | MS.gene28288:CDS | 45.0% | |
| ATGGTCGATGGAGAAGTTGA+AGG | - | chr2.1:64716376-64716395 | None:intergenic | 45.0% | |
| CATGGAAGACGTCAACAATG+GGG | - | chr2.1:64717094-64717113 | None:intergenic | 45.0% | |
| CTAATGGAGGTGGTAGACAA+TGG | - | chr2.1:64717560-64717579 | None:intergenic | 45.0% | |
| GAAATTGGGATCTTCAACGG+AGG | - | chr2.1:64718352-64718371 | None:intergenic | 45.0% | |
| GCTCAGAAAACCGAATGTGA+TGG | - | chr2.1:64716395-64716414 | None:intergenic | 45.0% | |
| GTTGAGAGAGGTTACTGGAA+GGG | - | chr2.1:64716347-64716366 | None:intergenic | 45.0% | |
| TCATTTCTCTCCTAACCGGA+GGG | - | chr2.1:64717670-64717689 | None:intergenic | 45.0% | |
| TCGAAGTCCAAATCGTTTGC+AGG | + | chr2.1:64717601-64717620 | MS.gene28288:CDS | 45.0% | |
| TCTAACGAGTCTGTGAGTTG+TGG | - | chr2.1:64718214-64718233 | None:intergenic | 45.0% | |
| TCTCCATCGACCATCACATT+CGG | + | chr2.1:64716382-64716401 | MS.gene28288:CDS | 45.0% | |
| TGAAGAACTACGCGTCTCAA+GGG | + | chr2.1:64718414-64718433 | MS.gene28288:CDS | 45.0% | |
| TGATGGCCAATGGTAACAAG+AGG | + | chr2.1:64717283-64717302 | MS.gene28288:intron | 45.0% | |
| TGTCAGAAGACCGATTGTGT+TGG | + | chr2.1:64716420-64716439 | MS.gene28288:CDS | 45.0% | |
| TGTCCAAAACACTGCCTCAT+CGG | + | chr2.1:64718303-64718322 | MS.gene28288:CDS | 45.0% | |
| TTATACTTCACCCTCCGGTT+AGG | + | chr2.1:64717657-64717676 | MS.gene28288:intron | 45.0% | |
| TTGGTTGAGGTTTGAGAGAG+AGG | - | chr2.1:64716308-64716327 | None:intergenic | 45.0% | |
| ! | ACTCAAGGCATCAGTAGAAG+CGG | - | chr2.1:64716698-64716717 | None:intergenic | 45.0% |
| ! | GAGCGTTGTCGTTGGAAATT+GGG | - | chr2.1:64718366-64718385 | None:intergenic | 45.0% |
| ! | TCGTTTTATGGGACTGATCG+TGG | + | chr2.1:64716598-64716617 | MS.gene28288:CDS | 45.0% |
| ! | TGAGCGTTGTCGTTGGAAAT+TGG | - | chr2.1:64718367-64718386 | None:intergenic | 45.0% |
| ! | TTGTGTGGAGAAGTTGGTTG+AGG | - | chr2.1:64716321-64716340 | None:intergenic | 45.0% |
| !! | GAAAGTGACGGATAGTGAGA+CGG | + | chr2.1:64716549-64716568 | MS.gene28288:CDS | 45.0% |
| !! | TTACTGGAAGGGTGTTTGTG+TGG | - | chr2.1:64716336-64716355 | None:intergenic | 45.0% |
| !!! | GCGTTGGTTGGTTCGTTTTA+TGG | + | chr2.1:64716586-64716605 | MS.gene28288:CDS | 45.0% |
| !! | GAATAAATAAATAAAAAATA+TGG | + | chr2.1:64717002-64717021 | MS.gene28288:intron | 5.0% |
| AGTAGTCCGCTCGAAAGCAA+TGG | - | chr2.1:64717455-64717474 | None:intergenic | 50.0% | |
| CAATGGGGATGTAGCTCAGA+TGG | - | chr2.1:64717079-64717098 | None:intergenic | 50.0% | |
| CCAACGACAACGCTCAATCA+TGG | + | chr2.1:64718371-64718390 | MS.gene28288:CDS | 50.0% | |
| CGATGGAGAAGTTGAAGGTG+TGG | - | chr2.1:64716371-64716390 | None:intergenic | 50.0% | |
| CGCAGGTATACATCCTTTGC+CGG | + | chr2.1:64717422-64717441 | MS.gene28288:intron | 50.0% | |
| CGGCAAAGGATGTATACCTG+CGG | - | chr2.1:64717424-64717443 | None:intergenic | 50.0% | |
| GAAGAACTACGCGTCTCAAG+GGG | + | chr2.1:64718415-64718434 | MS.gene28288:CDS | 50.0% | |
| GATCTTCAACGGAGGCTGAT+TGG | - | chr2.1:64718344-64718363 | None:intergenic | 50.0% | |
| GCATCACATGTGATGGCCAA+TGG | + | chr2.1:64717273-64717292 | MS.gene28288:intron | 50.0% | |
| GGGCAAACCTGCAAACGATT+TGG | - | chr2.1:64717611-64717630 | None:intergenic | 50.0% | |
| GGGTGTTTGTGTGGAGAAGT+TGG | - | chr2.1:64716327-64716346 | None:intergenic | 50.0% | |
| GTGGAGTTGAGAGAGGTTAC+TGG | - | chr2.1:64716352-64716371 | None:intergenic | 50.0% | |
| TGAGACGGAGAAGCTGAAGA+AGG | + | chr2.1:64716564-64716583 | MS.gene28288:CDS | 50.0% | |
| ! | CCATGATTGAGCGTTGTCGT+TGG | - | chr2.1:64718374-64718393 | None:intergenic | 50.0% |
| ! | CTCAAGGCATCAGTAGAAGC+GGG | - | chr2.1:64716697-64716716 | None:intergenic | 50.0% |
| ! | TGAAGGTGTGGAGTTGAGAG+AGG | - | chr2.1:64716359-64716378 | None:intergenic | 50.0% |
| ! | TTGTGTTGGCCGATGGTTTG+AGG | + | chr2.1:64716434-64716453 | MS.gene28288:CDS | 50.0% |
| !! | AAGCTGAAGAAGGCGTTGGT+TGG | + | chr2.1:64716574-64716593 | MS.gene28288:CDS | 50.0% |
| !! | GGCATTGGTACTAATGGAGG+TGG | - | chr2.1:64717570-64717589 | None:intergenic | 50.0% |
| !! | GGTTTGATTTGTGGTTCCGC+AGG | + | chr2.1:64717405-64717424 | MS.gene28288:intron | 50.0% |
| CGCTTAGCATGCGAGAGGTA+CGG | - | chr2.1:64717047-64717066 | None:intergenic | 55.0% | |
| GCATCAGTAGAAGCGGGTGT+GGG | - | chr2.1:64716691-64716710 | None:intergenic | 55.0% | |
| TGTTGGCCGATGGTTTGAGG+CGG | + | chr2.1:64716437-64716456 | MS.gene28288:CDS | 55.0% | |
| ! | AGACCGATTGTGTTGGCCGA+TGG | + | chr2.1:64716427-64716446 | MS.gene28288:CDS | 55.0% |
| ! | CGACCGATGAGGCAGTGTTT+TGG | - | chr2.1:64718309-64718328 | None:intergenic | 55.0% |
| ! | CTTAGCATGCGAGAGGTACG+GGG | - | chr2.1:64717045-64717064 | None:intergenic | 55.0% |
| ! | GCTTAGCATGCGAGAGGTAC+GGG | - | chr2.1:64717046-64717065 | None:intergenic | 55.0% |
| ! | GGAGAAGCTGAAGAAGGCGT+TGG | + | chr2.1:64716570-64716589 | MS.gene28288:CDS | 55.0% |
| CTACGCGTCTCAAGGGGTGA+TGG | + | chr2.1:64718421-64718440 | MS.gene28288:CDS | 60.0% | |
| GGCATCAGTAGAAGCGGGTG+TGG | - | chr2.1:64716692-64716711 | None:intergenic | 60.0% | |
| TGAGGCGGGCGGTGTATGTT+CGG | + | chr2.1:64716452-64716471 | MS.gene28288:CDS | 60.0% | |
| ! | GTTGGCCGATGGTTTGAGGC+GGG | + | chr2.1:64716438-64716457 | MS.gene28288:CDS | 60.0% |
| AGAGCCTTCTGCTGGCGTCG+CGG | + | chr2.1:64716504-64716523 | MS.gene28288:CDS | 65.0% | |
| CACCGCCCGCCTCAAACCAT+CGG | - | chr2.1:64716446-64716465 | None:intergenic | 65.0% | |
| GAGGCGGGCGGTGTATGTTC+GGG | + | chr2.1:64716453-64716472 | MS.gene28288:CDS | 65.0% | |
| GCGCTCGCTTAGCATGCGAG+AGG | - | chr2.1:64717052-64717071 | None:intergenic | 65.0% | |
| TGGGGTCCAGAGCCTTCTGC+TGG | + | chr2.1:64716496-64716515 | MS.gene28288:CDS | 65.0% | |
| TTCTGCTGGCGTCGCGGTTG+CGG | + | chr2.1:64716510-64716529 | MS.gene28288:CDS | 65.0% | |
| ! | CGCGTCTCAAGGGGTGATGG+TGG | + | chr2.1:64718424-64718443 | MS.gene28288:CDS | 65.0% |
| GCAACCGCGACGCCAGCAGA+AGG | - | chr2.1:64716511-64716530 | None:intergenic | 70.0% | |
| GCGACGCCAGCAGAAGGCTC+TGG | - | chr2.1:64716505-64716524 | None:intergenic | 70.0% | |
| ! | GGCCGATGGTTTGAGGCGGG+CGG | + | chr2.1:64716441-64716460 | MS.gene28288:CDS | 70.0% |
| TGCTGGCGTCGCGGTTGCGG+AGG | + | chr2.1:64716513-64716532 | MS.gene28288:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 64716301 | 64718495 | 64716301 | ID=MS.gene28288 |
| chr2.1 | mRNA | 64716301 | 64718495 | 64716301 | ID=MS.gene28288.t1;Parent=MS.gene28288 |
| chr2.1 | exon | 64716301 | 64716743 | 64716301 | ID=MS.gene28288.t1.exon1;Parent=MS.gene28288.t1 |
| chr2.1 | CDS | 64716301 | 64716743 | 64716301 | ID=cds.MS.gene28288.t1;Parent=MS.gene28288.t1 |
| chr2.1 | exon | 64717427 | 64717622 | 64717427 | ID=MS.gene28288.t1.exon2;Parent=MS.gene28288.t1 |
| chr2.1 | CDS | 64717427 | 64717622 | 64717427 | ID=cds.MS.gene28288.t1;Parent=MS.gene28288.t1 |
| chr2.1 | exon | 64718181 | 64718495 | 64718181 | ID=MS.gene28288.t1.exon3;Parent=MS.gene28288.t1 |
| chr2.1 | CDS | 64718181 | 64718495 | 64718181 | ID=cds.MS.gene28288.t1;Parent=MS.gene28288.t1 |
| Gene Sequence |
| Protein sequence |
