Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40220.t1 | XP_003603680.1 | 92.7 | 441 | 31 | 1 | 1 | 440 | 1 | 441 | 2.90E-226 | 794.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40220.t1 | Q9SXC4 | 56.2 | 443 | 142 | 8 | 1 | 440 | 1 | 394 | 7.3e-133 | 475.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40220.t1 | Q50HW4 | 92.7 | 441 | 31 | 1 | 1 | 440 | 1 | 441 | 2.1e-226 | 794.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene40220 | 0.81249 | 4.13E-51 | -1.69E-46 |
| MS.gene04915 | MS.gene40220 | 0.808753 | 2.65E-50 | -1.69E-46 |
| MS.gene049166 | MS.gene40220 | 0.808236 | 3.42E-50 | -1.69E-46 |
| MS.gene04917 | MS.gene40220 | 0.813759 | 2.18E-51 | -1.69E-46 |
| MS.gene049208 | MS.gene40220 | 0.803639 | 3.17E-49 | -1.69E-46 |
| MS.gene049368 | MS.gene40220 | 0.81183 | 5.75E-51 | -1.69E-46 |
| MS.gene049411 | MS.gene40220 | 0.815638 | 8.34E-52 | -1.69E-46 |
| MS.gene049674 | MS.gene40220 | 0.800503 | 1.40E-48 | -1.69E-46 |
| MS.gene049685 | MS.gene40220 | 0.807238 | 5.57E-50 | -1.69E-46 |
| MS.gene049807 | MS.gene40220 | 0.804177 | 2.45E-49 | -1.69E-46 |
| MS.gene049887 | MS.gene40220 | 0.823505 | 1.34E-53 | -1.69E-46 |
| MS.gene050085 | MS.gene40220 | 0.809058 | 2.28E-50 | -1.69E-46 |
| MS.gene050114 | MS.gene40220 | 0.815234 | 1.03E-51 | -1.69E-46 |
| MS.gene050317 | MS.gene40220 | 0.815691 | 8.12E-52 | -1.69E-46 |
| MS.gene050359 | MS.gene40220 | 0.831647 | 1.48E-55 | -1.69E-46 |
| MS.gene050386 | MS.gene40220 | 0.806565 | 7.73E-50 | -1.69E-46 |
| MS.gene050646 | MS.gene40220 | 0.832194 | 1.09E-55 | -1.69E-46 |
| MS.gene050654 | MS.gene40220 | 0.827657 | 1.39E-54 | -1.69E-46 |
| MS.gene050689 | MS.gene40220 | 0.845912 | 3.02E-59 | -1.69E-46 |
| MS.gene050752 | MS.gene40220 | 0.83753 | 4.92E-57 | -1.69E-46 |
| MS.gene050838 | MS.gene40220 | 0.89889 | 3.41E-77 | -1.69E-46 |
| MS.gene050931 | MS.gene40220 | 0.814145 | 1.79E-51 | -1.69E-46 |
| MS.gene050941 | MS.gene40220 | 0.81565 | 8.29E-52 | -1.69E-46 |
| MS.gene051003 | MS.gene40220 | 0.871134 | 8.61E-67 | -1.69E-46 |
| MS.gene051102 | MS.gene40220 | 0.806846 | 6.75E-50 | -1.69E-46 |
| MS.gene051233 | MS.gene40220 | 0.819032 | 1.44E-52 | -1.69E-46 |
| MS.gene051234 | MS.gene40220 | 0.866646 | 2.45E-65 | -1.69E-46 |
| MS.gene051343 | MS.gene40220 | 0.860424 | 2.09E-63 | -1.69E-46 |
| MS.gene051381 | MS.gene40220 | 0.825629 | 4.22E-54 | -1.69E-46 |
| MS.gene051642 | MS.gene40220 | 0.844189 | 8.82E-59 | -1.69E-46 |
| MS.gene051852 | MS.gene40220 | 0.809274 | 2.05E-50 | -1.69E-46 |
| MS.gene051902 | MS.gene40220 | 0.843092 | 1.73E-58 | -1.69E-46 |
| MS.gene052072 | MS.gene40220 | 0.817341 | 3.47E-52 | -1.69E-46 |
| MS.gene052242 | MS.gene40220 | -0.807073 | 6.04E-50 | -1.69E-46 |
| MS.gene052296 | MS.gene40220 | 0.827161 | 1.82E-54 | -1.69E-46 |
| MS.gene052307 | MS.gene40220 | 0.859057 | 5.38E-63 | -1.69E-46 |
| MS.gene052335 | MS.gene40220 | 0.853278 | 2.66E-61 | -1.69E-46 |
| MS.gene052342 | MS.gene40220 | 0.833797 | 4.34E-56 | -1.69E-46 |
| MS.gene052397 | MS.gene40220 | 0.8143 | 1.65E-51 | -1.69E-46 |
| MS.gene052434 | MS.gene40220 | 0.833703 | 4.58E-56 | -1.69E-46 |
| MS.gene052609 | MS.gene40220 | 0.850191 | 1.99E-60 | -1.69E-46 |
| MS.gene052932 | MS.gene40220 | 0.819176 | 1.33E-52 | -1.69E-46 |
| MS.gene053058 | MS.gene40220 | 0.844107 | 9.28E-59 | -1.69E-46 |
| MS.gene053143 | MS.gene40220 | 0.843583 | 1.28E-58 | -1.69E-46 |
| MS.gene053167 | MS.gene40220 | 0.819599 | 1.07E-52 | -1.69E-46 |
| MS.gene053381 | MS.gene40220 | 0.812711 | 3.69E-51 | -1.69E-46 |
| MS.gene053456 | MS.gene40220 | 0.809935 | 1.48E-50 | -1.69E-46 |
| MS.gene053564 | MS.gene40220 | 0.806609 | 7.57E-50 | -1.69E-46 |
| MS.gene053581 | MS.gene40220 | 0.801272 | 9.74E-49 | -1.69E-46 |
| MS.gene053786 | MS.gene40220 | 0.825897 | 3.65E-54 | -1.69E-46 |
| MS.gene054004 | MS.gene40220 | 0.819471 | 1.14E-52 | -1.69E-46 |
| MS.gene054403 | MS.gene40220 | 0.833851 | 4.21E-56 | -1.69E-46 |
| MS.gene054823 | MS.gene40220 | 0.805408 | 1.35E-49 | -1.69E-46 |
| MS.gene055311 | MS.gene40220 | 0.836743 | 7.83E-57 | -1.69E-46 |
| MS.gene055313 | MS.gene40220 | 0.80998 | 1.45E-50 | -1.69E-46 |
| MS.gene055314 | MS.gene40220 | 0.818425 | 1.97E-52 | -1.69E-46 |
| MS.gene055513 | MS.gene40220 | 0.845827 | 3.18E-59 | -1.69E-46 |
| MS.gene056045 | MS.gene40220 | 0.805191 | 1.50E-49 | -1.69E-46 |
| MS.gene056097 | MS.gene40220 | 0.847646 | 1.01E-59 | -1.69E-46 |
| MS.gene056181 | MS.gene40220 | 0.867886 | 9.83E-66 | -1.69E-46 |
| MS.gene056308 | MS.gene40220 | 0.802115 | 6.54E-49 | -1.69E-46 |
| MS.gene056390 | MS.gene40220 | 0.826433 | 2.72E-54 | -1.69E-46 |
| MS.gene056578 | MS.gene40220 | 0.838562 | 2.67E-57 | -1.69E-46 |
| MS.gene056752 | MS.gene40220 | 0.839725 | 1.33E-57 | -1.69E-46 |
| MS.gene056787 | MS.gene40220 | 0.835849 | 1.32E-56 | -1.69E-46 |
| MS.gene056992 | MS.gene40220 | 0.83306 | 6.62E-56 | -1.69E-46 |
| MS.gene057057 | MS.gene40220 | 0.803567 | 3.28E-49 | -1.69E-46 |
| MS.gene057094 | MS.gene40220 | 0.806175 | 9.35E-50 | -1.69E-46 |
| MS.gene057102 | MS.gene40220 | 0.813694 | 2.25E-51 | -1.69E-46 |
| MS.gene057234 | MS.gene40220 | 0.812633 | 3.84E-51 | -1.69E-46 |
| MS.gene05781 | MS.gene40220 | 0.823514 | 1.33E-53 | -1.69E-46 |
| MS.gene057999 | MS.gene40220 | 0.802723 | 4.90E-49 | -1.69E-46 |
| MS.gene058054 | MS.gene40220 | 0.822583 | 2.19E-53 | -1.69E-46 |
| MS.gene058055 | MS.gene40220 | 0.812592 | 3.92E-51 | -1.69E-46 |
| MS.gene058261 | MS.gene40220 | 0.83569 | 1.45E-56 | -1.69E-46 |
| MS.gene058278 | MS.gene40220 | 0.801486 | 8.80E-49 | -1.69E-46 |
| MS.gene058638 | MS.gene40220 | 0.828864 | 7.09E-55 | -1.69E-46 |
| MS.gene058639 | MS.gene40220 | 0.839415 | 1.61E-57 | -1.69E-46 |
| MS.gene058646 | MS.gene40220 | 0.826744 | 2.29E-54 | -1.69E-46 |
| MS.gene058654 | MS.gene40220 | 0.840617 | 7.81E-58 | -1.69E-46 |
| MS.gene058758 | MS.gene40220 | 0.854343 | 1.31E-61 | -1.69E-46 |
| MS.gene059007 | MS.gene40220 | 0.802774 | 4.78E-49 | -1.69E-46 |
| MS.gene059146 | MS.gene40220 | 0.814399 | 1.57E-51 | -1.69E-46 |
| MS.gene059170 | MS.gene40220 | 0.815539 | 8.78E-52 | -1.69E-46 |
| MS.gene059171 | MS.gene40220 | 0.833685 | 4.63E-56 | -1.69E-46 |
| MS.gene059227 | MS.gene40220 | 0.81586 | 7.45E-52 | -1.69E-46 |
| MS.gene059965 | MS.gene40220 | 0.809186 | 2.14E-50 | -1.69E-46 |
| MS.gene06010 | MS.gene40220 | 0.804969 | 1.67E-49 | -1.69E-46 |
| MS.gene06011 | MS.gene40220 | 0.820357 | 7.16E-53 | -1.69E-46 |
| MS.gene060296 | MS.gene40220 | 0.803282 | 3.76E-49 | -1.69E-46 |
| MS.gene060563 | MS.gene40220 | 0.856592 | 2.90E-62 | -1.69E-46 |
| MS.gene060763 | MS.gene40220 | 0.80882 | 2.57E-50 | -1.69E-46 |
| MS.gene060932 | MS.gene40220 | 0.809681 | 1.68E-50 | -1.69E-46 |
| MS.gene060937 | MS.gene40220 | 0.800585 | 1.35E-48 | -1.69E-46 |
| MS.gene061006 | MS.gene40220 | 0.845306 | 4.41E-59 | -1.69E-46 |
| MS.gene061100 | MS.gene40220 | 0.854893 | 9.09E-62 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40220.t1 | MTR_3g111060 | 96.599 | 441 | 14 | 1 | 1 | 440 | 1 | 441 | 0.0 | 889 |
| MS.gene40220.t1 | MTR_3g110142 | 41.593 | 452 | 228 | 9 | 1 | 436 | 1 | 432 | 1.72e-111 | 335 |
| MS.gene40220.t1 | MTR_3g110142 | 41.562 | 397 | 196 | 9 | 1 | 381 | 1 | 377 | 4.02e-93 | 286 |
| MS.gene40220.t1 | MTR_5g016600 | 28.041 | 296 | 162 | 9 | 187 | 440 | 151 | 437 | 1.73e-24 | 106 |
| MS.gene40220.t1 | MTR_4g094912 | 27.848 | 316 | 179 | 9 | 167 | 440 | 130 | 438 | 1.50e-22 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40220.t1 | AT1G27600 | 56.433 | 443 | 141 | 8 | 1 | 440 | 1 | 394 | 5.78e-172 | 488 |
| MS.gene40220.t1 | AT1G27600 | 56.433 | 443 | 141 | 8 | 1 | 440 | 1 | 394 | 5.78e-172 | 488 |
| MS.gene40220.t1 | AT2G37090 | 35.638 | 376 | 186 | 12 | 57 | 414 | 4 | 341 | 1.05e-70 | 227 |
| MS.gene40220.t1 | AT5G67230 | 30.479 | 292 | 163 | 9 | 187 | 440 | 152 | 441 | 1.21e-29 | 120 |
| MS.gene40220.t1 | AT4G36890 | 28.754 | 313 | 171 | 10 | 171 | 440 | 148 | 451 | 1.11e-26 | 112 |
Find 93 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCAAGAACAAGGCTATTT+TGG | 0.178767 | 3.2:+88884825 | MS.gene40220:CDS |
| TTCCACCAATTGTTCAATAA+AGG | 0.288276 | 3.2:-88885132 | None:intergenic |
| GGAAATGAATTCTGCTTCTA+TGG | 0.295993 | 3.2:+88883299 | MS.gene40220:CDS |
| GCGATTATTGAGAATTGATT+TGG | 0.304122 | 3.2:-88882983 | None:intergenic |
| AGATTTCATGTTGATATGTC+TGG | 0.307522 | 3.2:+88884916 | MS.gene40220:CDS |
| ACTGAGTCTAATTGCCGTAT+AGG | 0.330564 | 3.2:-88885000 | None:intergenic |
| GTAGGGCGCCGCCACCGCTT+TGG | 0.351660 | 3.2:-88884970 | None:intergenic |
| TGCGTTCTCTGTTTCTTCGT+TGG | 0.355661 | 3.2:+88882844 | MS.gene40220:CDS |
| GACCACCTTTATTGAACAAT+TGG | 0.367701 | 3.2:+88885127 | MS.gene40220:CDS |
| TTCTCAAGCATCCAACCCTT+TGG | 0.387858 | 3.2:-88885242 | None:intergenic |
| GCGTTCTCTGTTTCTTCGTT+GGG | 0.390433 | 3.2:+88882845 | MS.gene40220:CDS |
| ATTGAACATCATAAACTTGA+TGG | 0.398247 | 3.2:+88883438 | MS.gene40220:CDS |
| GCCCTACTTCAAATCCTATA+CGG | 0.399233 | 3.2:+88884986 | MS.gene40220:CDS |
| TCGTCGTTTCAGAGATTAAT+CGG | 0.401703 | 3.2:+88882763 | MS.gene40220:CDS |
| TTCAGACAATCAGAGATATC+AGG | 0.403188 | 3.2:+88883508 | MS.gene40220:CDS |
| AAAATAGCCTTGTTCTTGCT+TGG | 0.406483 | 3.2:-88884823 | None:intergenic |
| TTATTAGGTATGTTCCCTTT+CGG | 0.411490 | 3.2:+88882871 | MS.gene40220:CDS |
| CACGTCAGCGTCGGTGGTGG+TGG | 0.416469 | 3.2:+88883018 | MS.gene40220:CDS |
| GGATAAGGATAAGAAGAGTA+AGG | 0.423109 | 3.2:+88883050 | MS.gene40220:CDS |
| GTTGCAAGAAAATAATGAAT+TGG | 0.437417 | 3.2:+88885186 | MS.gene40220:CDS |
| CACGACCGTCACTACATAAA+CGG | 0.444334 | 3.2:+88882664 | MS.gene40220:CDS |
| AATGGCGAAAAGTTGCTTTC+AGG | 0.453308 | 3.2:+88882821 | MS.gene40220:CDS |
| CACAAACTTCCATCTTCAAA+CGG | 0.454365 | 3.2:+88882721 | MS.gene40220:CDS |
| TCAACGGATGTGAAGGATAG+AGG | 0.473437 | 3.2:+88883384 | MS.gene40220:CDS |
| CATAATATAGTTTATCCAAA+GGG | 0.474680 | 3.2:+88885227 | MS.gene40220:CDS |
| GAGTAGTTTCCGTTTGAAGA+TGG | 0.479126 | 3.2:-88882730 | None:intergenic |
| GATTTCATGTTGATATGTCT+GGG | 0.481532 | 3.2:+88884917 | MS.gene40220:CDS |
| TGTGGGATCCAAAGCGGTGG+CGG | 0.482823 | 3.2:+88884962 | MS.gene40220:CDS |
| AGATGGAGACGACGGTGAAA+AGG | 0.484318 | 3.2:-88882698 | None:intergenic |
| CACCTTTATTGAACAATTGG+TGG | 0.486008 | 3.2:+88885130 | MS.gene40220:CDS |
| TGACGTGGATGACAGCATCT+AGG | 0.490726 | 3.2:-88885268 | None:intergenic |
| TGGTGGTGATGATGAGGATA+AGG | 0.495077 | 3.2:+88883035 | MS.gene40220:CDS |
| CTTGGTGCAAGCATGGCGAC+AGG | 0.495355 | 3.2:-88884805 | None:intergenic |
| GCCGTATAGGATTTGAAGTA+GGG | 0.501903 | 3.2:-88884987 | None:intergenic |
| ATAATGAAAAGCTGAAAGAG+AGG | 0.501926 | 3.2:+88883124 | MS.gene40220:CDS |
| CATGAATGAGATTACCGAAA+GGG | 0.506123 | 3.2:-88882885 | None:intergenic |
| TAGTGACGGTCGTGATATGC+CGG | 0.506800 | 3.2:-88882655 | None:intergenic |
| ATTCCGACGGACGTTATCTC+CGG | 0.516727 | 3.2:+88882636 | MS.gene40220:CDS |
| GAAGATGGAAGTTTGTGAGA+TGG | 0.518700 | 3.2:-88882715 | None:intergenic |
| GTTCTTGCTTGGTGCAAGCA+TGG | 0.519522 | 3.2:-88884812 | None:intergenic |
| TGCCGTATAGGATTTGAAGT+AGG | 0.523006 | 3.2:-88884988 | None:intergenic |
| TTGAACATCATAAACTTGAT+GGG | 0.527171 | 3.2:+88883439 | MS.gene40220:CDS |
| AAGCACGTCAGCGTCGGTGG+TGG | 0.531902 | 3.2:+88883015 | MS.gene40220:CDS |
| GGGTGTGATGTATAGGCATT+TGG | 0.535560 | 3.2:+88883347 | MS.gene40220:CDS |
| GCAATTAGACTCAGTGAAAG+AGG | 0.535687 | 3.2:+88885008 | MS.gene40220:CDS |
| ATATAGTTTATCCAAAGGGT+TGG | 0.536359 | 3.2:+88885231 | MS.gene40220:CDS |
| TGCAATGGAAGCCAAGTGCT+TGG | 0.537309 | 3.2:+88884859 | MS.gene40220:CDS |
| ATTGATTTGGCATCAGATTG+TGG | 0.537571 | 3.2:-88882970 | None:intergenic |
| GATAAGGATAAGAAGAGTAA+GGG | 0.537759 | 3.2:+88883051 | MS.gene40220:CDS |
| TTGTATGCCACCCAAGCACT+TGG | 0.538534 | 3.2:-88884870 | None:intergenic |
| GGTGGAAGATGAGAGTCAAA+TGG | 0.541257 | 3.2:+88885148 | MS.gene40220:CDS |
| ATCTGAGAAAATTGATATTG+TGG | 0.542030 | 3.2:+88883158 | MS.gene40220:CDS |
| TCAAATGGAAGGTTCGCCAC+CGG | 0.544013 | 3.2:+88885163 | MS.gene40220:CDS |
| CACCAATTGTTCAATAAAGG+TGG | 0.551699 | 3.2:-88885129 | None:intergenic |
| CAAATGGAAGGTTCGCCACC+GGG | 0.554822 | 3.2:+88885164 | MS.gene40220:CDS |
| GCAATGGAAGCCAAGTGCTT+GGG | 0.557871 | 3.2:+88884860 | MS.gene40220:CDS |
| TAATGAAAAGCTGAAAGAGA+GGG | 0.563255 | 3.2:+88883125 | MS.gene40220:CDS |
| TAAGAATTCAACGGATGTGA+AGG | 0.565155 | 3.2:+88883377 | MS.gene40220:CDS |
| TTGGAGGGTCCGGTATGCAA+TGG | 0.566859 | 3.2:+88884844 | MS.gene40220:CDS |
| ACTTGGCTTCCATTGCATAC+CGG | 0.569129 | 3.2:-88884853 | None:intergenic |
| TCATCAGAGGAATAAAGCAT+TGG | 0.572046 | 3.2:+88883410 | MS.gene40220:CDS |
| ACCACCCATAAAAGCGGCGG+CGG | 0.572761 | 3.2:-88883273 | None:intergenic |
| TGAAAAGCGCGGTTATAAGT+CGG | 0.578372 | 3.2:-88883207 | None:intergenic |
| ATGCGACGATACAATCGAAA+GGG | 0.578550 | 3.2:+88882796 | MS.gene40220:CDS |
| AATTAATGGCGTCATTCCGA+CGG | 0.581992 | 3.2:+88882623 | None:intergenic |
| CATTCAACAGCACAATCCTG+TGG | 0.583078 | 3.2:+88884944 | MS.gene40220:CDS |
| CTCAAACATGAACGCTGAGA+AGG | 0.583981 | 3.2:+88883101 | MS.gene40220:CDS |
| TCATAATATAGTTTATCCAA+AGG | 0.585209 | 3.2:+88885226 | MS.gene40220:CDS |
| GATACAATCGAAAGGGACAA+TGG | 0.588516 | 3.2:+88882803 | MS.gene40220:CDS |
| CGGTGGTGGTGGTGATGATG+AGG | 0.599517 | 3.2:+88883029 | MS.gene40220:CDS |
| CAATTAGACTCAGTGAAAGA+GGG | 0.602242 | 3.2:+88885009 | MS.gene40220:CDS |
| GCTTGCACCAAGCAAGAACA+AGG | 0.606742 | 3.2:+88884816 | MS.gene40220:CDS |
| TCCTGTGGGATCCAAAGCGG+TGG | 0.608772 | 3.2:+88884959 | MS.gene40220:CDS |
| GCCACCGCTTTGGATCCCAC+AGG | 0.619308 | 3.2:-88884960 | None:intergenic |
| AGGATAGAGGAGTTCATCAG+AGG | 0.628437 | 3.2:+88883397 | MS.gene40220:CDS |
| CGTCACTACATAAACGGCGG+TGG | 0.628520 | 3.2:+88882670 | MS.gene40220:CDS |
| ATGGAAGCCAAGTGCTTGGG+TGG | 0.635295 | 3.2:+88884863 | MS.gene40220:CDS |
| TCCACCACCACCCATAAAAG+CGG | 0.639611 | 3.2:-88883279 | None:intergenic |
| TGGTGGAAGATTACTTGACG+TGG | 0.643604 | 3.2:-88885283 | None:intergenic |
| CATGCGACGATACAATCGAA+AGG | 0.645339 | 3.2:+88882795 | MS.gene40220:CDS |
| TGGAGACGACGGTGAAAAGG+CGG | 0.646294 | 3.2:-88882695 | None:intergenic |
| CACCGCCGTTTATGTAGTGA+CGG | 0.648586 | 3.2:-88882669 | None:intergenic |
| TCATGAATGAGATTACCGAA+AGG | 0.650007 | 3.2:-88882886 | None:intergenic |
| ATTCAACAGCACAATCCTGT+GGG | 0.650054 | 3.2:+88884945 | MS.gene40220:CDS |
| AGAAAATTGATATTGTGGCG+AGG | 0.651531 | 3.2:+88883163 | MS.gene40220:CDS |
| GAAGATGAGAGTCAAATGGA+AGG | 0.657273 | 3.2:+88885152 | MS.gene40220:CDS |
| ACCACCACCCATAAAAGCGG+CGG | 0.658671 | 3.2:-88883276 | None:intergenic |
| TCGTTTCAGAGATTAATCGG+TGG | 0.678331 | 3.2:+88882766 | MS.gene40220:CDS |
| GGTGTGTACTAAGAATTCAA+CGG | 0.679123 | 3.2:+88883368 | MS.gene40220:CDS |
| ATGCCGGAGATAACGTCCGT+CGG | 0.686418 | 3.2:-88882639 | None:intergenic |
| GACCGTCACTACATAAACGG+CGG | 0.698582 | 3.2:+88882667 | MS.gene40220:CDS |
| CAATCCTGTGGGATCCAAAG+CGG | 0.703864 | 3.2:+88884956 | MS.gene40220:CDS |
| AGTTTGTGAGATGGAGACGA+CGG | 0.778732 | 3.2:-88882706 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTTGAAAAATTCAAATT+TGG | - | chr3.2:88884523-88884542 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAACAATCATCA+AGG | - | chr3.2:88883703-88883722 | None:intergenic | 15.0% |
| !! | AAAAAAAAAACAATCATCAA+GGG | - | chr3.2:88883702-88883721 | None:intergenic | 15.0% |
| !! | AAATCAAAACAATACAAATT+AGG | - | chr3.2:88884034-88884053 | None:intergenic | 15.0% |
| !! | AACTTTAAGTATAAATTCAA+AGG | - | chr3.2:88883596-88883615 | None:intergenic | 15.0% |
| !! | AATAATAATCCTAAAAAAGT+AGG | - | chr3.2:88883565-88883584 | None:intergenic | 15.0% |
| !! | ATTAAATAAATTTGTGTGTT+TGG | + | chr3.2:88884553-88884572 | MS.gene40220:intron | 15.0% |
| !! | TATAAAATTCATACAAGAAA+CGG | - | chr3.2:88883749-88883768 | None:intergenic | 15.0% |
| !!! | ACTTTTTTAGGATTATTATT+CGG | + | chr3.2:88883565-88883584 | MS.gene40220:intron | 15.0% |
| !!! | ATTTTCCTTTTTTAATGAAA+TGG | + | chr3.2:88884494-88884513 | MS.gene40220:intron | 15.0% |
| !!! | TTCTTGTATGAATTTTATAA+CGG | + | chr3.2:88883750-88883769 | MS.gene40220:intron | 15.0% |
| !!! | TTTTTTCTCTTAAATATCTT+TGG | + | chr3.2:88883717-88883736 | MS.gene40220:intron | 15.0% |
| !! | AATCAATACATAACAATCAA+AGG | - | chr3.2:88884472-88884491 | None:intergenic | 20.0% |
| !! | CATAATATAGTTTATCCAAA+GGG | + | chr3.2:88885227-88885246 | MS.gene40220:CDS | 20.0% |
| !! | GTGTAAATAAAAGTAATGAT+AGG | - | chr3.2:88885050-88885069 | None:intergenic | 20.0% |
| !! | TAAATAAAAGTAATGATAGG+AGG | - | chr3.2:88885047-88885066 | None:intergenic | 20.0% |
| !! | TCATAATATAGTTTATCCAA+AGG | + | chr3.2:88885226-88885245 | MS.gene40220:CDS | 20.0% |
| !!! | CATATTTTTTGAATAGGTTA+GGG | + | chr3.2:88883232-88883251 | MS.gene40220:CDS | 20.0% |
| !!! | TAAAGTTATATTGCTTGTTT+TGG | + | chr3.2:88883609-88883628 | MS.gene40220:intron | 20.0% |
| !!! | TCATATTTTTTGAATAGGTT+AGG | + | chr3.2:88883231-88883250 | MS.gene40220:CDS | 20.0% |
| !!! | TCTTGTATGAATTTTATAAC+GGG | + | chr3.2:88883751-88883770 | MS.gene40220:intron | 20.0% |
| !!! | TTCAGTCATATTTTTTGAAT+AGG | + | chr3.2:88883226-88883245 | MS.gene40220:CDS | 20.0% |
| ! | AAAACATGCTAATGTAACAA+AGG | - | chr3.2:88884133-88884152 | None:intergenic | 25.0% |
| ! | ATCTGAGAAAATTGATATTG+TGG | + | chr3.2:88883158-88883177 | MS.gene40220:CDS | 25.0% |
| ! | ATTGAACATCATAAACTTGA+TGG | + | chr3.2:88883438-88883457 | MS.gene40220:CDS | 25.0% |
| ! | CAGGAAATAAAGTGAAAATA+CGG | + | chr3.2:88884210-88884229 | MS.gene40220:intron | 25.0% |
| ! | CTCCTACACTTAATTAAAAA+GGG | - | chr3.2:88884316-88884335 | None:intergenic | 25.0% |
| ! | GGATTCCATTTCATTAAAAA+AGG | - | chr3.2:88884502-88884521 | None:intergenic | 25.0% |
| ! | GGTGAAAACAAGATTTATAA+AGG | - | chr3.2:88884166-88884185 | None:intergenic | 25.0% |
| ! | GTTGCAAGAAAATAATGAAT+TGG | + | chr3.2:88885186-88885205 | MS.gene40220:CDS | 25.0% |
| ! | TTGAACATCATAAACTTGAT+GGG | + | chr3.2:88883439-88883458 | MS.gene40220:CDS | 25.0% |
| !! | ATAATACCTTTAACTTTGAC+AGG | + | chr3.2:88885103-88885122 | MS.gene40220:intron | 25.0% |
| !!! | TGTGTTATACCTACTTTTTT+AGG | + | chr3.2:88883553-88883572 | MS.gene40220:intron | 25.0% |
| !!! | TTCCCTTTTTAATTAAGTGT+AGG | + | chr3.2:88884311-88884330 | MS.gene40220:intron | 25.0% |
| AAAAAAACAATCATCAAGGG+AGG | - | chr3.2:88883699-88883718 | None:intergenic | 30.0% | |
| AAAAAACAATCATCAAGGGA+GGG | - | chr3.2:88883698-88883717 | None:intergenic | 30.0% | |
| AAAAACACAATTGCCAAAGA+TGG | - | chr3.2:88884449-88884468 | None:intergenic | 30.0% | |
| AAAAATATGACTGAAAAGCG+CGG | - | chr3.2:88883221-88883240 | None:intergenic | 30.0% | |
| AAAAGTAGGTATAACACAAC+AGG | - | chr3.2:88883551-88883570 | None:intergenic | 30.0% | |
| AAGTTAAATGATGTACACAG+AGG | - | chr3.2:88884677-88884696 | None:intergenic | 30.0% | |
| AGATTTCATGTTGATATGTC+TGG | + | chr3.2:88884916-88884935 | MS.gene40220:CDS | 30.0% | |
| AGTTATGAAGGTGACATTTA+CGG | - | chr3.2:88883891-88883910 | None:intergenic | 30.0% | |
| ATAATGAAAAGCTGAAAGAG+AGG | + | chr3.2:88883124-88883143 | MS.gene40220:CDS | 30.0% | |
| ATATAGTTTATCCAAAGGGT+TGG | + | chr3.2:88885231-88885250 | MS.gene40220:CDS | 30.0% | |
| CAGTTCAACATTAGAACATA+GGG | - | chr3.2:88884760-88884779 | None:intergenic | 30.0% | |
| CCTCCTACACTTAATTAAAA+AGG | - | chr3.2:88884317-88884336 | None:intergenic | 30.0% | |
| CTTCATAAATTCTCGAAAAC+AGG | + | chr3.2:88884191-88884210 | MS.gene40220:intron | 30.0% | |
| GATAAGGATAAGAAGAGTAA+GGG | + | chr3.2:88883051-88883070 | MS.gene40220:CDS | 30.0% | |
| GATTTCATGTTGATATGTCT+GGG | + | chr3.2:88884917-88884936 | MS.gene40220:CDS | 30.0% | |
| GCGATTATTGAGAATTGATT+TGG | - | chr3.2:88882986-88883005 | None:intergenic | 30.0% | |
| TAATGAAAAGCTGAAAGAGA+GGG | + | chr3.2:88883125-88883144 | MS.gene40220:CDS | 30.0% | |
| TATCAGATAATACGAATTGC+AGG | - | chr3.2:88885086-88885105 | None:intergenic | 30.0% | |
| TCGAGAATTTATGAAGGAAA+AGG | - | chr3.2:88884187-88884206 | None:intergenic | 30.0% | |
| TGCTGAATTGTTGAGAAAAA+CGG | + | chr3.2:88883326-88883345 | MS.gene40220:CDS | 30.0% | |
| TTATTAGGTATGTTCCCTTT+CGG | + | chr3.2:88882871-88882890 | MS.gene40220:CDS | 30.0% | |
| TTCCACCAATTGTTCAATAA+AGG | - | chr3.2:88885135-88885154 | None:intergenic | 30.0% | |
| TTGGATGACACAATTCATAA+AGG | - | chr3.2:88884717-88884736 | None:intergenic | 30.0% | |
| TTTAATTAAGTGTAGGAGGA+AGG | + | chr3.2:88884318-88884337 | MS.gene40220:intron | 30.0% | |
| ! | TTCATTATTTTCTTGCAACC+CGG | - | chr3.2:88885185-88885204 | None:intergenic | 30.0% |
| ! | TTCTTCGTTGGGTTTTTATT+AGG | + | chr3.2:88882856-88882875 | MS.gene40220:CDS | 30.0% |
| !! | CCTTTTTAATTAAGTGTAGG+AGG | + | chr3.2:88884314-88884333 | MS.gene40220:intron | 30.0% |
| !! | CTGTTTTCGAGAATTTATGA+AGG | - | chr3.2:88884193-88884212 | None:intergenic | 30.0% |
| !! | TGTATGAATTTTATAACGGG+CGG | + | chr3.2:88883754-88883773 | MS.gene40220:intron | 30.0% |
| !!! | AACTGGTTTTATAGTCGTTT+TGG | + | chr3.2:88884775-88884794 | MS.gene40220:intron | 30.0% |
| !!! | ACTTTTTTCCCTTCCATTTT+CGG | - | chr3.2:88884283-88884302 | None:intergenic | 30.0% |
| !!! | AGTTATATTGCTTGTTTTGG+AGG | + | chr3.2:88883612-88883631 | MS.gene40220:intron | 30.0% |
| AAATGATGTACACAGAGGAT+GGG | - | chr3.2:88884672-88884691 | None:intergenic | 35.0% | |
| AATACGAATTGCAGGTGATA+TGG | - | chr3.2:88885078-88885097 | None:intergenic | 35.0% | |
| AGAAAATTGATATTGTGGCG+AGG | + | chr3.2:88883163-88883182 | MS.gene40220:CDS | 35.0% | |
| ATACGAATTGCAGGTGATAT+GGG | - | chr3.2:88885077-88885096 | None:intergenic | 35.0% | |
| ATGGTTGTTGTAATTGTTCG+TGG | + | chr3.2:88883636-88883655 | MS.gene40220:intron | 35.0% | |
| CAACATTAGAACATAGGGTT+AGG | - | chr3.2:88884755-88884774 | None:intergenic | 35.0% | |
| CAATTAGACTCAGTGAAAGA+GGG | + | chr3.2:88885009-88885028 | MS.gene40220:CDS | 35.0% | |
| CACAAACTTCCATCTTCAAA+CGG | + | chr3.2:88882721-88882740 | MS.gene40220:CDS | 35.0% | |
| CACCAATTGTTCAATAAAGG+TGG | - | chr3.2:88885132-88885151 | None:intergenic | 35.0% | |
| CACCTTTATTGAACAATTGG+TGG | + | chr3.2:88885130-88885149 | MS.gene40220:CDS | 35.0% | |
| CATGAATGAGATTACCGAAA+GGG | - | chr3.2:88882888-88882907 | None:intergenic | 35.0% | |
| CCAGTTCAACATTAGAACAT+AGG | - | chr3.2:88884761-88884780 | None:intergenic | 35.0% | |
| CCTATGTTCTAATGTTGAAC+TGG | + | chr3.2:88884758-88884777 | MS.gene40220:intron | 35.0% | |
| CTTGTGAATACCCAAAAACA+AGG | - | chr3.2:88884079-88884098 | None:intergenic | 35.0% | |
| GACCACCTTTATTGAACAAT+TGG | + | chr3.2:88885127-88885146 | MS.gene40220:CDS | 35.0% | |
| GCTGAATTGTTGAGAAAAAC+GGG | + | chr3.2:88883327-88883346 | MS.gene40220:CDS | 35.0% | |
| GGAAATGAATTCTGCTTCTA+TGG | + | chr3.2:88883299-88883318 | MS.gene40220:CDS | 35.0% | |
| GGATAAGGATAAGAAGAGTA+AGG | + | chr3.2:88883050-88883069 | MS.gene40220:CDS | 35.0% | |
| GGTGTGTACTAAGAATTCAA+CGG | + | chr3.2:88883368-88883387 | MS.gene40220:CDS | 35.0% | |
| GTAGATACAACTCAGAAAAC+TGG | - | chr3.2:88884591-88884610 | None:intergenic | 35.0% | |
| TAAATGATGTACACAGAGGA+TGG | - | chr3.2:88884673-88884692 | None:intergenic | 35.0% | |
| TAAGAATTCAACGGATGTGA+AGG | + | chr3.2:88883377-88883396 | MS.gene40220:CDS | 35.0% | |
| TAGGAACTGAATGAACAAGT+TGG | - | chr3.2:88884736-88884755 | None:intergenic | 35.0% | |
| TCATCAGAGGAATAAAGCAT+TGG | + | chr3.2:88883410-88883429 | MS.gene40220:CDS | 35.0% | |
| TCATGAATGAGATTACCGAA+AGG | - | chr3.2:88882889-88882908 | None:intergenic | 35.0% | |
| TCGTCGTTTCAGAGATTAAT+CGG | + | chr3.2:88882763-88882782 | MS.gene40220:CDS | 35.0% | |
| TGGTTGTTGTAATTGTTCGT+GGG | + | chr3.2:88883637-88883656 | MS.gene40220:intron | 35.0% | |
| TTCAGACAATCAGAGATATC+AGG | + | chr3.2:88883508-88883527 | MS.gene40220:CDS | 35.0% | |
| ! | AAGCAAGAACAAGGCTATTT+TGG | + | chr3.2:88884825-88884844 | MS.gene40220:CDS | 35.0% |
| ! | AATGACGTATTGACCGAAAA+TGG | + | chr3.2:88884267-88884286 | MS.gene40220:intron | 35.0% |
| ! | GTTTTCTGAGTTGTATCTAC+TGG | + | chr3.2:88884591-88884610 | MS.gene40220:intron | 35.0% |
| ! | TTGTTTTCACGATGTTGTTG+AGG | - | chr3.2:88882916-88882935 | None:intergenic | 35.0% |
| !! | AAAATAGCCTTGTTCTTGCT+TGG | - | chr3.2:88884826-88884845 | None:intergenic | 35.0% |
| !! | AAGAACAAGGCTATTTTGGA+GGG | + | chr3.2:88884829-88884848 | MS.gene40220:CDS | 35.0% |
| !! | ATTGATTTGGCATCAGATTG+TGG | - | chr3.2:88882973-88882992 | None:intergenic | 35.0% |
| !! | ATTTGGGAGTTTGGGTTTTT+GGG | + | chr3.2:88883666-88883685 | MS.gene40220:intron | 35.0% |
| !! | TTTATAGTCGTTTTGGCACT+TGG | + | chr3.2:88884782-88884801 | MS.gene40220:intron | 35.0% |
| !!! | GTATGAATTTTATAACGGGC+GGG | + | chr3.2:88883755-88883774 | MS.gene40220:intron | 35.0% |
| !!! | TATTGCTTGTTTTGGAGGTA+TGG | + | chr3.2:88883617-88883636 | MS.gene40220:intron | 35.0% |
| !!! | TTTTTTGAATAGGTTAGGGC+AGG | + | chr3.2:88883236-88883255 | MS.gene40220:CDS | 35.0% |
| ACACAATTGCCAAAGATGGT+TGG | - | chr3.2:88884445-88884464 | None:intergenic | 40.0% | |
| ACTGAGTCTAATTGCCGTAT+AGG | - | chr3.2:88885003-88885022 | None:intergenic | 40.0% | |
| ATGCGACGATACAATCGAAA+GGG | + | chr3.2:88882796-88882815 | MS.gene40220:CDS | 40.0% | |
| ATTAAGTGTAGGAGGAAGGT+AGG | + | chr3.2:88884322-88884341 | MS.gene40220:intron | 40.0% | |
| ATTCAACAGCACAATCCTGT+GGG | + | chr3.2:88884945-88884964 | MS.gene40220:CDS | 40.0% | |
| CCGATACACTTGTAGTCTAA+CGG | + | chr3.2:88883780-88883799 | MS.gene40220:intron | 40.0% | |
| CCGTTAGACTACAAGTGTAT+CGG | - | chr3.2:88883783-88883802 | None:intergenic | 40.0% | |
| CTCAAGAACAACCAACTTGT+CGG | - | chr3.2:88883919-88883938 | None:intergenic | 40.0% | |
| GAAAAACGGGTGTGATGTAT+AGG | + | chr3.2:88883340-88883359 | MS.gene40220:CDS | 40.0% | |
| GAAGATGAGAGTCAAATGGA+AGG | + | chr3.2:88885152-88885171 | MS.gene40220:CDS | 40.0% | |
| GAAGATGGAAGTTTGTGAGA+TGG | - | chr3.2:88882718-88882737 | None:intergenic | 40.0% | |
| GAGTAGTTTCCGTTTGAAGA+TGG | - | chr3.2:88882733-88882752 | None:intergenic | 40.0% | |
| GATACAATCGAAAGGGACAA+TGG | + | chr3.2:88882803-88882822 | MS.gene40220:CDS | 40.0% | |
| GCAATTAGACTCAGTGAAAG+AGG | + | chr3.2:88885008-88885027 | MS.gene40220:CDS | 40.0% | |
| GCCCTACTTCAAATCCTATA+CGG | + | chr3.2:88884986-88885005 | MS.gene40220:CDS | 40.0% | |
| GCTTCAATGAAGGTTCATAG+TGG | + | chr3.2:88884378-88884397 | MS.gene40220:intron | 40.0% | |
| GGTTACAGTTATTGAGGCAT+TGG | + | chr3.2:88883842-88883861 | MS.gene40220:intron | 40.0% | |
| GTTAATGTGGCCGAAATTTG+CGG | + | chr3.2:88883943-88883962 | MS.gene40220:intron | 40.0% | |
| GTTCTTGAGAGGAGTTAATG+TGG | + | chr3.2:88883930-88883949 | MS.gene40220:intron | 40.0% | |
| TACACTTGTAGTCTAACGGT+TGG | + | chr3.2:88883784-88883803 | MS.gene40220:intron | 40.0% | |
| TACGAATTGCAGGTGATATG+GGG | - | chr3.2:88885076-88885095 | None:intergenic | 40.0% | |
| TCGTTTCAGAGATTAATCGG+TGG | + | chr3.2:88882766-88882785 | MS.gene40220:CDS | 40.0% | |
| TCTGCATTATCCAATGAGTC+TGG | + | chr3.2:88883818-88883837 | MS.gene40220:intron | 40.0% | |
| TGAACCTTCATTGAAGCATG+TGG | - | chr3.2:88884375-88884394 | None:intergenic | 40.0% | |
| TGGTCTCCTGTCAAAGTTAA+AGG | - | chr3.2:88885112-88885131 | None:intergenic | 40.0% | |
| TGTTCGTGGGATTGTGATTT+GGG | + | chr3.2:88883650-88883669 | MS.gene40220:intron | 40.0% | |
| TTGTCGGTAGCAAGTTATGA+AGG | - | chr3.2:88883903-88883922 | None:intergenic | 40.0% | |
| TTGTTCGTGGGATTGTGATT+TGG | + | chr3.2:88883649-88883668 | MS.gene40220:intron | 40.0% | |
| ! | AATGGCGAAAAGTTGCTTTC+AGG | + | chr3.2:88882821-88882840 | MS.gene40220:CDS | 40.0% |
| ! | ACGTATTGACCGAAAATGGA+AGG | + | chr3.2:88884271-88884290 | MS.gene40220:intron | 40.0% |
| ! | ATTATTTTCTTGCAACCCGG+TGG | - | chr3.2:88885182-88885201 | None:intergenic | 40.0% |
| ! | CGTATTGACCGAAAATGGAA+GGG | + | chr3.2:88884272-88884291 | MS.gene40220:intron | 40.0% |
| ! | GCCGTATAGGATTTGAAGTA+GGG | - | chr3.2:88884990-88885009 | None:intergenic | 40.0% |
| ! | GGATTGTGATTTGGGAGTTT+GGG | + | chr3.2:88883658-88883677 | MS.gene40220:intron | 40.0% |
| ! | TGAAAAGCGCGGTTATAAGT+CGG | - | chr3.2:88883210-88883229 | None:intergenic | 40.0% |
| ! | TGCCGTATAGGATTTGAAGT+AGG | - | chr3.2:88884991-88885010 | None:intergenic | 40.0% |
| !! | ACAAGTTGGTTGTTCTTGAG+AGG | + | chr3.2:88883919-88883938 | MS.gene40220:intron | 40.0% |
| !! | ATAACTTGCTACCGACAAGT+TGG | + | chr3.2:88883905-88883924 | MS.gene40220:intron | 40.0% |
| !! | CAAGAACAAGGCTATTTTGG+AGG | + | chr3.2:88884828-88884847 | MS.gene40220:CDS | 40.0% |
| !! | GATTTGGGAGTTTGGGTTTT+TGG | + | chr3.2:88883665-88883684 | MS.gene40220:intron | 40.0% |
| !! | TACAGTTATTGAGGCATTGG+TGG | + | chr3.2:88883845-88883864 | MS.gene40220:intron | 40.0% |
| !!! | GACTAATGCGCCTTGTTTTT+GGG | + | chr3.2:88884066-88884085 | MS.gene40220:intron | 40.0% |
| !!! | TGACTAATGCGCCTTGTTTT+TGG | + | chr3.2:88884065-88884084 | MS.gene40220:intron | 40.0% |
| ACGAATTGCAGGTGATATGG+GGG | - | chr3.2:88885075-88885094 | None:intergenic | 45.0% | |
| ACTTGGCTTCCATTGCATAC+CGG | - | chr3.2:88884856-88884875 | None:intergenic | 45.0% | |
| AGGATAGAGGAGTTCATCAG+AGG | + | chr3.2:88883397-88883416 | MS.gene40220:CDS | 45.0% | |
| AGTTTGTGAGATGGAGACGA+CGG | - | chr3.2:88882709-88882728 | None:intergenic | 45.0% | |
| CACGACCGTCACTACATAAA+CGG | + | chr3.2:88882664-88882683 | MS.gene40220:CDS | 45.0% | |
| CATGCGACGATACAATCGAA+AGG | + | chr3.2:88882795-88882814 | MS.gene40220:CDS | 45.0% | |
| CATTCAACAGCACAATCCTG+TGG | + | chr3.2:88884944-88884963 | MS.gene40220:CDS | 45.0% | |
| CCCCAAAGAACCGCAAATTT+CGG | - | chr3.2:88883956-88883975 | None:intergenic | 45.0% | |
| CCGAAATTTGCGGTTCTTTG+GGG | + | chr3.2:88883953-88883972 | MS.gene40220:intron | 45.0% | |
| CGAAATTTGCGGTTCTTTGG+GGG | + | chr3.2:88883954-88883973 | MS.gene40220:intron | 45.0% | |
| CTCAAACATGAACGCTGAGA+AGG | + | chr3.2:88883101-88883120 | MS.gene40220:CDS | 45.0% | |
| GCATTATCCAATGAGTCTGG+CGG | + | chr3.2:88883821-88883840 | MS.gene40220:intron | 45.0% | |
| GCCGAAATTTGCGGTTCTTT+GGG | + | chr3.2:88883952-88883971 | MS.gene40220:intron | 45.0% | |
| GGGTATTCACAAGCTTGTCT+GGG | + | chr3.2:88884086-88884105 | MS.gene40220:intron | 45.0% | |
| GGGTGTGATGTATAGGCATT+TGG | + | chr3.2:88883347-88883366 | MS.gene40220:CDS | 45.0% | |
| GGTGGAAGATGAGAGTCAAA+TGG | + | chr3.2:88885148-88885167 | MS.gene40220:CDS | 45.0% | |
| TCAACGGATGTGAAGGATAG+AGG | + | chr3.2:88883384-88883403 | MS.gene40220:CDS | 45.0% | |
| TCTGGCGGTTACAGTTATTG+AGG | + | chr3.2:88883836-88883855 | MS.gene40220:intron | 45.0% | |
| TGGGTATTCACAAGCTTGTC+TGG | + | chr3.2:88884085-88884104 | MS.gene40220:intron | 45.0% | |
| TTCTCAAGCATCCAACCCTT+TGG | - | chr3.2:88885245-88885264 | None:intergenic | 45.0% | |
| ! | ATAGGTTAGGGCAGGTTTTG+AGG | + | chr3.2:88883244-88883263 | MS.gene40220:CDS | 45.0% |
| ! | CTCAGTGAAAGAGGGTTTTC+AGG | + | chr3.2:88885017-88885036 | MS.gene40220:CDS | 45.0% |
| ! | GCGTTCTCTGTTTCTTCGTT+GGG | + | chr3.2:88882845-88882864 | MS.gene40220:CDS | 45.0% |
| ! | GGGATTGTGATTTGGGAGTT+TGG | + | chr3.2:88883657-88883676 | MS.gene40220:intron | 45.0% |
| ! | GGTTCTTTGGGGGATCAATT+CGG | + | chr3.2:88883964-88883983 | MS.gene40220:intron | 45.0% |
| ! | GTTCTTTGGGGGATCAATTC+GGG | + | chr3.2:88883965-88883984 | MS.gene40220:intron | 45.0% |
| ! | TCGGGGTTTTTACATACGCA+AGG | + | chr3.2:88883983-88884002 | MS.gene40220:intron | 45.0% |
| ! | TGCGTTCTCTGTTTCTTCGT+TGG | + | chr3.2:88882844-88882863 | MS.gene40220:CDS | 45.0% |
| ! | TGGTGGTGATGATGAGGATA+AGG | + | chr3.2:88883035-88883054 | MS.gene40220:CDS | 45.0% |
| ! | TTCTTTGGGGGATCAATTCG+GGG | + | chr3.2:88883966-88883985 | MS.gene40220:intron | 45.0% |
| ! | TTGAAAAAGCACGTCAGCGT+CGG | + | chr3.2:88883009-88883028 | MS.gene40220:CDS | 45.0% |
| AATTGCAGGTGATATGGGGG+TGG | - | chr3.2:88885072-88885091 | None:intergenic | 50.0% | |
| ACGGCGCACAAGTGTTTAAC+TGG | - | chr3.2:88883872-88883891 | None:intergenic | 50.0% | |
| ACTGTAACCGCCAGACTCAT+TGG | - | chr3.2:88883831-88883850 | None:intergenic | 50.0% | |
| AGATGGAGACGACGGTGAAA+AGG | - | chr3.2:88882701-88882720 | None:intergenic | 50.0% | |
| ATTCCGACGGACGTTATCTC+CGG | + | chr3.2:88882636-88882655 | MS.gene40220:CDS | 50.0% | |
| CAATCCTGTGGGATCCAAAG+CGG | + | chr3.2:88884956-88884975 | MS.gene40220:CDS | 50.0% | |
| CACCGCCGTTTATGTAGTGA+CGG | - | chr3.2:88882672-88882691 | None:intergenic | 50.0% | |
| CAGGCCACATGCTTCAATGA+AGG | + | chr3.2:88884368-88884387 | MS.gene40220:intron | 50.0% | |
| CCTACTGAGCCAACCATCTT+TGG | + | chr3.2:88884433-88884452 | MS.gene40220:intron | 50.0% | |
| GACCGTCACTACATAAACGG+CGG | + | chr3.2:88882667-88882686 | MS.gene40220:CDS | 50.0% | |
| GCAATGGAAGCCAAGTGCTT+GGG | + | chr3.2:88884860-88884879 | MS.gene40220:CDS | 50.0% | |
| GCTTGCACCAAGCAAGAACA+AGG | + | chr3.2:88884816-88884835 | MS.gene40220:CDS | 50.0% | |
| GGCCGAAATTTGCGGTTCTT+TGG | + | chr3.2:88883951-88883970 | MS.gene40220:intron | 50.0% | |
| TAGTGACGGTCGTGATATGC+CGG | - | chr3.2:88882658-88882677 | None:intergenic | 50.0% | |
| TCAAATGGAAGGTTCGCCAC+CGG | + | chr3.2:88885163-88885182 | MS.gene40220:CDS | 50.0% | |
| TCCACCACCACCCATAAAAG+CGG | - | chr3.2:88883282-88883301 | None:intergenic | 50.0% | |
| TGACGTGGATGACAGCATCT+AGG | - | chr3.2:88885271-88885290 | None:intergenic | 50.0% | |
| TGCAATGGAAGCCAAGTGCT+TGG | + | chr3.2:88884859-88884878 | MS.gene40220:CDS | 50.0% | |
| TTGTATGCCACCCAAGCACT+TGG | - | chr3.2:88884873-88884892 | None:intergenic | 50.0% | |
| ! | CCAAAGATGGTTGGCTCAGT+AGG | - | chr3.2:88884436-88884455 | None:intergenic | 50.0% |
| !! | CAAGGCTATTTTGGAGGGTC+CGG | + | chr3.2:88884834-88884853 | MS.gene40220:CDS | 50.0% |
| !! | GTTCTTGCTTGGTGCAAGCA+TGG | - | chr3.2:88884815-88884834 | None:intergenic | 50.0% |
| !!! | GTTAGGGCAGGTTTTGAGGT+TGG | + | chr3.2:88883248-88883267 | MS.gene40220:CDS | 50.0% |
| ACCACCACCCATAAAAGCGG+CGG | - | chr3.2:88883279-88883298 | None:intergenic | 55.0% | |
| ATGCCGGAGATAACGTCCGT+CGG | - | chr3.2:88882642-88882661 | None:intergenic | 55.0% | |
| ATGGAAGCCAAGTGCTTGGG+TGG | + | chr3.2:88884863-88884882 | MS.gene40220:CDS | 55.0% | |
| ATGTGGCCTGTCTCGACCAT+GGG | - | chr3.2:88884358-88884377 | None:intergenic | 55.0% | |
| CAAATGGAAGGTTCGCCACC+GGG | + | chr3.2:88885164-88885183 | MS.gene40220:CDS | 55.0% | |
| CGTCACTACATAAACGGCGG+TGG | + | chr3.2:88882670-88882689 | MS.gene40220:CDS | 55.0% | |
| TGGAGACGACGGTGAAAAGG+CGG | - | chr3.2:88882698-88882717 | None:intergenic | 55.0% | |
| TTGGAGGGTCCGGTATGCAA+TGG | + | chr3.2:88884844-88884863 | MS.gene40220:CDS | 55.0% | |
| ! | AAAAAGCACGTCAGCGTCGG+TGG | + | chr3.2:88883012-88883031 | MS.gene40220:CDS | 55.0% |
| ACCACCCATAAAAGCGGCGG+CGG | - | chr3.2:88883276-88883295 | None:intergenic | 60.0% | |
| CATGTGGCCTGTCTCGACCA+TGG | - | chr3.2:88884359-88884378 | None:intergenic | 60.0% | |
| CCTGTCTCGACCATGGGAGT+GGG | - | chr3.2:88884352-88884371 | None:intergenic | 60.0% | |
| TCCTGTGGGATCCAAAGCGG+TGG | + | chr3.2:88884959-88884978 | MS.gene40220:CDS | 60.0% | |
| TGTGGGATCCAAAGCGGTGG+CGG | + | chr3.2:88884962-88884981 | MS.gene40220:CDS | 60.0% | |
| ! | CTTGGTGCAAGCATGGCGAC+AGG | - | chr3.2:88884808-88884827 | None:intergenic | 60.0% |
| ! | GGTAGGTTGACCCACTCCCA+TGG | + | chr3.2:88884339-88884358 | MS.gene40220:intron | 60.0% |
| !! | CGGTGGTGGTGGTGATGATG+AGG | + | chr3.2:88883029-88883048 | MS.gene40220:CDS | 60.0% |
| !!! | GCCGCTTTTATGGGTGGTGG+TGG | + | chr3.2:88883278-88883297 | MS.gene40220:CDS | 60.0% |
| CCCACTCCCATGGTCGAGAC+AGG | + | chr3.2:88884349-88884368 | MS.gene40220:intron | 65.0% | |
| GCCTGTCTCGACCATGGGAG+TGG | - | chr3.2:88884353-88884372 | None:intergenic | 65.0% | |
| ! | GCCACCGCTTTGGATCCCAC+AGG | - | chr3.2:88884963-88884982 | None:intergenic | 65.0% |
| !! | AAGCACGTCAGCGTCGGTGG+TGG | + | chr3.2:88883015-88883034 | MS.gene40220:CDS | 65.0% |
| !!! | GCCGCCGCTTTTATGGGTGG+TGG | + | chr3.2:88883275-88883294 | MS.gene40220:CDS | 65.0% |
| !!! | GGTGCCGCCGCCGCTTTTAT+GGG | + | chr3.2:88883269-88883288 | MS.gene40220:CDS | 65.0% |
| !!! | TGGTGCCGCCGCCGCTTTTA+TGG | + | chr3.2:88883268-88883287 | MS.gene40220:CDS | 65.0% |
| !! | CACGTCAGCGTCGGTGGTGG+TGG | + | chr3.2:88883018-88883037 | MS.gene40220:CDS | 70.0% |
| !!! | GCCGCCGCCGCTTTTATGGG+TGG | + | chr3.2:88883272-88883291 | MS.gene40220:CDS | 70.0% |
| !! | GTAGGGCGCCGCCACCGCTT+TGG | - | chr3.2:88884973-88884992 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 88882628 | 88885295 | 88882628 | ID=MS.gene40220 |
| chr3.2 | mRNA | 88882628 | 88885295 | 88882628 | ID=MS.gene40220.t1;Parent=MS.gene40220 |
| chr3.2 | exon | 88882628 | 88883529 | 88882628 | ID=MS.gene40220.t1.exon1;Parent=MS.gene40220.t1 |
| chr3.2 | CDS | 88882628 | 88883529 | 88882628 | ID=cds.MS.gene40220.t1;Parent=MS.gene40220.t1 |
| chr3.2 | exon | 88884789 | 88885038 | 88884789 | ID=MS.gene40220.t1.exon2;Parent=MS.gene40220.t1 |
| chr3.2 | CDS | 88884789 | 88885038 | 88884789 | ID=cds.MS.gene40220.t1;Parent=MS.gene40220.t1 |
| chr3.2 | exon | 88885125 | 88885295 | 88885125 | ID=MS.gene40220.t1.exon3;Parent=MS.gene40220.t1 |
| chr3.2 | CDS | 88885125 | 88885295 | 88885125 | ID=cds.MS.gene40220.t1;Parent=MS.gene40220.t1 |
| Gene Sequence |
| Protein sequence |
