Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40678.t1 | XP_013456365.1 | 97.5 | 448 | 11 | 0 | 1 | 448 | 1 | 448 | 3.10E-231 | 810.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40678.t1 | Q94B35 | 73.0 | 459 | 108 | 3 | 5 | 448 | 8 | 465 | 6.0e-191 | 668.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40678.t1 | A0A072UM06 | 97.5 | 448 | 11 | 0 | 1 | 448 | 1 | 448 | 2.2e-231 | 810.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene40678 | 0.829454 | 5.10E-55 | -1.69E-46 |
| MS.gene049153 | MS.gene40678 | 0.830274 | 3.22E-55 | -1.69E-46 |
| MS.gene049378 | MS.gene40678 | 0.807267 | 5.49E-50 | -1.69E-46 |
| MS.gene049426 | MS.gene40678 | 0.803218 | 3.87E-49 | -1.69E-46 |
| MS.gene050226 | MS.gene40678 | 0.813728 | 2.21E-51 | -1.69E-46 |
| MS.gene050227 | MS.gene40678 | 0.812143 | 4.92E-51 | -1.69E-46 |
| MS.gene050228 | MS.gene40678 | 0.813061 | 3.10E-51 | -1.69E-46 |
| MS.gene050301 | MS.gene40678 | 0.806047 | 9.94E-50 | -1.69E-46 |
| MS.gene050426 | MS.gene40678 | -0.815927 | 7.19E-52 | -1.69E-46 |
| MS.gene050558 | MS.gene40678 | 0.809083 | 2.25E-50 | -1.69E-46 |
| MS.gene050560 | MS.gene40678 | 0.801963 | 7.03E-49 | -1.69E-46 |
| MS.gene050650 | MS.gene40678 | 0.806225 | 9.12E-50 | -1.69E-46 |
| MS.gene050670 | MS.gene40678 | 0.813687 | 2.26E-51 | -1.69E-46 |
| MS.gene050787 | MS.gene40678 | 0.810165 | 1.32E-50 | -1.69E-46 |
| MS.gene050820 | MS.gene40678 | 0.822624 | 2.14E-53 | -1.69E-46 |
| MS.gene051525 | MS.gene40678 | 0.86009 | 2.63E-63 | -1.69E-46 |
| MS.gene051568 | MS.gene40678 | 0.876969 | 9.15E-69 | -1.69E-46 |
| MS.gene051582 | MS.gene40678 | 0.842947 | 1.89E-58 | -1.69E-46 |
| MS.gene051588 | MS.gene40678 | 0.846698 | 1.84E-59 | -1.69E-46 |
| MS.gene051860 | MS.gene40678 | 0.858284 | 9.16E-63 | -1.69E-46 |
| MS.gene051983 | MS.gene40678 | 0.809876 | 1.52E-50 | -1.69E-46 |
| MS.gene052011 | MS.gene40678 | -0.864402 | 1.25E-64 | -1.69E-46 |
| MS.gene052077 | MS.gene40678 | 0.804359 | 2.24E-49 | -1.69E-46 |
| MS.gene052159 | MS.gene40678 | 0.807741 | 4.36E-50 | -1.69E-46 |
| MS.gene052253 | MS.gene40678 | 0.847741 | 9.55E-60 | -1.69E-46 |
| MS.gene052485 | MS.gene40678 | 0.804477 | 2.12E-49 | -1.69E-46 |
| MS.gene053169 | MS.gene40678 | 0.828755 | 7.53E-55 | -1.69E-46 |
| MS.gene053176 | MS.gene40678 | 0.842345 | 2.74E-58 | -1.69E-46 |
| MS.gene053494 | MS.gene40678 | 0.801682 | 8.02E-49 | -1.69E-46 |
| MS.gene053584 | MS.gene40678 | 0.804301 | 2.31E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene40678 | 0.8296 | 4.70E-55 | -1.69E-46 |
| MS.gene053928 | MS.gene40678 | 0.807867 | 4.10E-50 | -1.69E-46 |
| MS.gene054010 | MS.gene40678 | 0.819783 | 9.69E-53 | -1.69E-46 |
| MS.gene054011 | MS.gene40678 | 0.817588 | 3.05E-52 | -1.69E-46 |
| MS.gene054012 | MS.gene40678 | 0.821794 | 3.34E-53 | -1.69E-46 |
| MS.gene054013 | MS.gene40678 | 0.811687 | 6.18E-51 | -1.69E-46 |
| MS.gene054183 | MS.gene40678 | 0.878982 | 1.81E-69 | -1.69E-46 |
| MS.gene054548 | MS.gene40678 | 0.837651 | 4.58E-57 | -1.69E-46 |
| MS.gene054556 | MS.gene40678 | 0.862406 | 5.19E-64 | -1.69E-46 |
| MS.gene054719 | MS.gene40678 | 0.819592 | 1.07E-52 | -1.69E-46 |
| MS.gene054918 | MS.gene40678 | 0.803257 | 3.80E-49 | -1.69E-46 |
| MS.gene054920 | MS.gene40678 | 0.86319 | 2.97E-64 | -1.69E-46 |
| MS.gene054930 | MS.gene40678 | 0.803379 | 3.59E-49 | -1.69E-46 |
| MS.gene054983 | MS.gene40678 | 0.800973 | 1.12E-48 | -1.69E-46 |
| MS.gene055356 | MS.gene40678 | 0.810932 | 9.01E-51 | -1.69E-46 |
| MS.gene055369 | MS.gene40678 | 0.832246 | 1.05E-55 | -1.69E-46 |
| MS.gene05553 | MS.gene40678 | 0.850864 | 1.29E-60 | -1.69E-46 |
| MS.gene05556 | MS.gene40678 | 0.810217 | 1.29E-50 | -1.69E-46 |
| MS.gene055604 | MS.gene40678 | 0.806009 | 1.01E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene40678 | 0.810629 | 1.05E-50 | -1.69E-46 |
| MS.gene05595 | MS.gene40678 | 0.852994 | 3.20E-61 | -1.69E-46 |
| MS.gene056407 | MS.gene40678 | 0.804129 | 2.50E-49 | -1.69E-46 |
| MS.gene056514 | MS.gene40678 | 0.842526 | 2.45E-58 | -1.69E-46 |
| MS.gene056723 | MS.gene40678 | 0.884256 | 2.24E-71 | -1.69E-46 |
| MS.gene056875 | MS.gene40678 | 0.804816 | 1.80E-49 | -1.69E-46 |
| MS.gene056902 | MS.gene40678 | 0.825226 | 5.26E-54 | -1.69E-46 |
| MS.gene057121 | MS.gene40678 | 0.800492 | 1.41E-48 | -1.69E-46 |
| MS.gene057396 | MS.gene40678 | 0.826442 | 2.71E-54 | -1.69E-46 |
| MS.gene057469 | MS.gene40678 | 0.860879 | 1.52E-63 | -1.69E-46 |
| MS.gene057476 | MS.gene40678 | 0.826071 | 3.32E-54 | -1.69E-46 |
| MS.gene057749 | MS.gene40678 | 0.808811 | 2.58E-50 | -1.69E-46 |
| MS.gene057823 | MS.gene40678 | 0.809289 | 2.04E-50 | -1.69E-46 |
| MS.gene057825 | MS.gene40678 | 0.808921 | 2.44E-50 | -1.69E-46 |
| MS.gene057826 | MS.gene40678 | 0.800487 | 1.41E-48 | -1.69E-46 |
| MS.gene057863 | MS.gene40678 | 0.803044 | 4.21E-49 | -1.69E-46 |
| MS.gene058142 | MS.gene40678 | 0.811134 | 8.15E-51 | -1.69E-46 |
| MS.gene058444 | MS.gene40678 | 0.806553 | 7.78E-50 | -1.69E-46 |
| MS.gene058700 | MS.gene40678 | 0.841952 | 3.48E-58 | -1.69E-46 |
| MS.gene05872 | MS.gene40678 | 0.802321 | 5.93E-49 | -1.69E-46 |
| MS.gene058739 | MS.gene40678 | 0.801855 | 7.40E-49 | -1.69E-46 |
| MS.gene058949 | MS.gene40678 | 0.821931 | 3.11E-53 | -1.69E-46 |
| MS.gene05907 | MS.gene40678 | 0.831007 | 2.13E-55 | -1.69E-46 |
| MS.gene059082 | MS.gene40678 | 0.840134 | 1.04E-57 | -1.69E-46 |
| MS.gene059247 | MS.gene40678 | 0.838271 | 3.18E-57 | -1.69E-46 |
| MS.gene059420 | MS.gene40678 | 0.877356 | 6.71E-69 | -1.69E-46 |
| MS.gene059462 | MS.gene40678 | 0.848711 | 5.15E-60 | -1.69E-46 |
| MS.gene059609 | MS.gene40678 | 0.825949 | 3.55E-54 | -1.69E-46 |
| MS.gene05984 | MS.gene40678 | 0.814236 | 1.71E-51 | -1.69E-46 |
| MS.gene059868 | MS.gene40678 | 0.803639 | 3.17E-49 | -1.69E-46 |
| MS.gene059876 | MS.gene40678 | 0.817988 | 2.48E-52 | -1.69E-46 |
| MS.gene059933 | MS.gene40678 | 0.805732 | 1.16E-49 | -1.69E-46 |
| MS.gene059958 | MS.gene40678 | 0.805516 | 1.29E-49 | -1.69E-46 |
| MS.gene060986 | MS.gene40678 | 0.831408 | 1.70E-55 | -1.69E-46 |
| MS.gene061114 | MS.gene40678 | -0.840761 | 7.16E-58 | -1.69E-46 |
| MS.gene061214 | MS.gene40678 | 0.824412 | 8.19E-54 | -1.69E-46 |
| MS.gene061215 | MS.gene40678 | 0.822946 | 1.80E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40678.t1 | MTR_4g069030 | 98.214 | 448 | 8 | 0 | 1 | 448 | 1 | 448 | 0.0 | 922 |
| MS.gene40678.t1 | MTR_4g069070 | 87.500 | 448 | 55 | 1 | 1 | 448 | 1 | 447 | 0.0 | 818 |
| MS.gene40678.t1 | MTR_1g090787 | 77.536 | 138 | 31 | 0 | 112 | 249 | 92 | 229 | 1.48e-69 | 221 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40678.t1 | AT4G34350 | 77.342 | 459 | 88 | 3 | 5 | 448 | 8 | 465 | 0.0 | 745 |
Find 105 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAAGACTTTGAAGGAAAA+TGG | 0.141165 | 4.1:-33414721 | MS.gene40678:CDS |
| ATTCTTGGTGGTGAATTTAA+TGG | 0.163592 | 4.1:-33413530 | MS.gene40678:CDS |
| ATTTAAATTTGCCCTTTCTA+AGG | 0.245365 | 4.1:-33413393 | MS.gene40678:CDS |
| AACGCGGAATTCCTTCTTAC+TGG | 0.255913 | 4.1:-33412802 | MS.gene40678:CDS |
| TTGTATGCTATTCTGTTTCC+TGG | 0.263735 | 4.1:+33412755 | None:intergenic |
| AGATTCTTACGGAAGAGTTT+TGG | 0.268289 | 4.1:+33415729 | None:intergenic |
| CCACAACCCAACTGTTAATA+AGG | 0.284593 | 4.1:-33414554 | MS.gene40678:intron |
| GATGTTACACCAATCCTTAA+TGG | 0.325134 | 4.1:+33412465 | None:intergenic |
| TTCTACCAAAGGGTCCATTA+AGG | 0.329049 | 4.1:-33412479 | MS.gene40678:CDS |
| GTAGTCATACTGCCTGCTTT+TGG | 0.349326 | 4.1:-33413995 | MS.gene40678:CDS |
| AGGACTATGATGCGCAAATA+TGG | 0.351670 | 4.1:-33413173 | MS.gene40678:CDS |
| TTCATCAGGAAATTGTTTCC+TGG | 0.355179 | 4.1:+33414603 | None:intergenic |
| TGTTTCTTCCCTTCTCCAAT+AGG | 0.358071 | 4.1:+33414043 | None:intergenic |
| TATGTTTGCGACTATATTCT+TGG | 0.365313 | 4.1:-33413545 | MS.gene40678:CDS |
| CCTTGTGACCAAAGCCTTTG+CGG | 0.366949 | 4.1:+33415685 | None:intergenic |
| AATTATAACCGCAAAGGCTT+TGG | 0.372584 | 4.1:-33415693 | MS.gene40678:CDS |
| AAATGCCTCTCTGGTTGAAC+TGG | 0.377526 | 4.1:+33413505 | None:intergenic |
| CAAGCTGGTGGAGAAGGATA+TGG | 0.380809 | 4.1:-33412891 | MS.gene40678:CDS |
| TTATGTTAGTTGTTGGTGGC+TGG | 0.411202 | 4.1:-33412865 | MS.gene40678:CDS |
| GTTCCTCGGCTATCTCTTGT+AGG | 0.412759 | 4.1:+33412822 | None:intergenic |
| ATGGATCTTATGTTAGTTGT+TGG | 0.420750 | 4.1:-33412872 | MS.gene40678:CDS |
| TTAAGACTTTGAAGGAAAAT+GGG | 0.420831 | 4.1:-33414720 | MS.gene40678:CDS |
| GAAGTGCAGAATATTCCTAT+TGG | 0.422603 | 4.1:-33414058 | MS.gene40678:CDS |
| TGGGTTGTGGATAATTTCAT+TGG | 0.423611 | 4.1:+33414567 | None:intergenic |
| CCTTATTAACAGTTGGGTTG+TGG | 0.426777 | 4.1:+33414554 | None:intergenic |
| AATATACCTTATTAACAGTT+GGG | 0.443511 | 4.1:+33414548 | None:intergenic |
| GAATATACCTTATTAACAGT+TGG | 0.443926 | 4.1:+33414547 | None:intergenic |
| GACTATACCTCGATAATTCA+TGG | 0.447725 | 4.1:-33413750 | MS.gene40678:CDS |
| CCAATCCTTAATGGACCCTT+TGG | 0.452397 | 4.1:+33412474 | None:intergenic |
| GGAACGTCGATGCGAGTGGC+GGG | 0.452613 | 4.1:+33415819 | None:intergenic |
| GTGATGCTAGCCGAATCCTT+TGG | 0.452734 | 4.1:-33414670 | MS.gene40678:CDS |
| GCAAGAGAAAATACCTTGTC+AGG | 0.454180 | 4.1:+33412429 | None:intergenic |
| CACTTCTTGTGAGATTCTTA+CGG | 0.455809 | 4.1:+33415718 | None:intergenic |
| TTCAAATTGCTTATGAAGCC+AGG | 0.465315 | 4.1:-33414621 | MS.gene40678:CDS |
| CAGTTGCTACGGTTTCCTCA+TGG | 0.466058 | 4.1:+33413718 | None:intergenic |
| ATTGACAGCGAGCATAGAAT+TGG | 0.467701 | 4.1:-33412779 | MS.gene40678:CDS |
| CTCGCGATTCATGAGTTTGA+GGG | 0.471780 | 4.1:+33415656 | None:intergenic |
| GATCTTATGTTAGTTGTTGG+TGG | 0.473078 | 4.1:-33412869 | MS.gene40678:CDS |
| TTTAAATTTGCCCTTTCTAA+GGG | 0.475566 | 4.1:-33413392 | MS.gene40678:CDS |
| CACAATTTGTGATGCTACTC+AGG | 0.482457 | 4.1:-33413114 | MS.gene40678:intron |
| CCAACAAAATCCAAAGGATT+CGG | 0.483780 | 4.1:+33414660 | None:intergenic |
| CGGAGAAGAGTTTGCGGCAA+CGG | 0.485618 | 4.1:+33415781 | None:intergenic |
| TTAAGGATTGGTGTAACATC+TGG | 0.487090 | 4.1:-33412462 | MS.gene40678:CDS |
| TGACATCATTAAGACTTTGA+AGG | 0.488498 | 4.1:-33414728 | MS.gene40678:CDS |
| AACTTGCCCGTGGGTTTCAA+AGG | 0.489241 | 4.1:-33413915 | MS.gene40678:intron |
| GAGTTTGCGGCAACGGAAAG+TGG | 0.489819 | 4.1:+33415788 | None:intergenic |
| CAGAATATTCCTATTGGAGA+AGG | 0.491958 | 4.1:-33414052 | MS.gene40678:CDS |
| AAAATGGGTTTGAGTATACA+TGG | 0.492239 | 4.1:-33414705 | MS.gene40678:CDS |
| AGAAGGAATTCCGCGTTCCT+CGG | 0.495852 | 4.1:+33412808 | None:intergenic |
| CGTGGAAGATGCGCTTATCA+AGG | 0.499064 | 4.1:-33412169 | MS.gene40678:CDS |
| CTTTCAGCATGGCGAGCTTG+TGG | 0.500668 | 4.1:-33412514 | MS.gene40678:intron |
| TCAACTGCGGCTCCAAAAGC+AGG | 0.503912 | 4.1:+33413983 | None:intergenic |
| GACAGTGACCTGGTAAAACT+TGG | 0.507138 | 4.1:-33413359 | MS.gene40678:CDS |
| AGCAAAAGATGCAGTTGCTA+CGG | 0.513891 | 4.1:+33413707 | None:intergenic |
| AAAGAAAACTTTCTACCAAA+GGG | 0.517497 | 4.1:-33412489 | MS.gene40678:CDS |
| AGTTGCTACGGTTTCCTCAT+GGG | 0.518159 | 4.1:+33413719 | None:intergenic |
| AGAAGGGAAGAAACAATTTG+AGG | 0.519363 | 4.1:-33414035 | MS.gene40678:CDS |
| GATGCAGCGGCTAGAGGAGA+TGG | 0.525080 | 4.1:-33414080 | MS.gene40678:intron |
| CCGCAAAGGCTTTGGTCACA+AGG | 0.525512 | 4.1:-33415685 | MS.gene40678:CDS |
| GAAAGAAAACTTTCTACCAA+AGG | 0.530120 | 4.1:-33412490 | MS.gene40678:CDS |
| ACAATTTGAGGTTGTCAACA+AGG | 0.534141 | 4.1:-33414023 | MS.gene40678:CDS |
| TATTTACAAGCTGGTGGAGA+AGG | 0.537601 | 4.1:-33412897 | MS.gene40678:CDS |
| ACTCGCGATTCATGAGTTTG+AGG | 0.543010 | 4.1:+33415655 | None:intergenic |
| CTGGATCAAAGCCCTTAGAA+AGG | 0.544154 | 4.1:+33413381 | None:intergenic |
| AGAAAATACCTTGTCAGGTG+TGG | 0.545193 | 4.1:+33412434 | None:intergenic |
| TGGATCAAAGCCCTTAGAAA+GGG | 0.549420 | 4.1:+33413382 | None:intergenic |
| CCAAAGGGTCCATTAAGGAT+TGG | 0.551091 | 4.1:-33412474 | MS.gene40678:CDS |
| AGCGAGCATAGAATTGGTCC+AGG | 0.565633 | 4.1:-33412773 | MS.gene40678:CDS |
| AACGGACGGAGAAGAGTTTG+CGG | 0.566321 | 4.1:+33415775 | None:intergenic |
| CAACGGAAAGTGGACGGAGA+AGG | 0.568434 | 4.1:+33415798 | None:intergenic |
| TGGGTCAAAATCGGAGTCGG+TGG | 0.570932 | 4.1:+33415749 | None:intergenic |
| AAATCAGACAACAATGCTCA+AGG | 0.577136 | 4.1:-33413330 | MS.gene40678:CDS |
| AATCGGAGTCGGTGGAGCAA+CGG | 0.577813 | 4.1:+33415757 | None:intergenic |
| ATGATTGATGCAGCGGCTAG+AGG | 0.580973 | 4.1:-33414086 | MS.gene40678:intron |
| TCGCTGTCAATCCAGTAAGA+AGG | 0.582364 | 4.1:+33412791 | None:intergenic |
| ACAAGATGCTATTTACAAGC+TGG | 0.585336 | 4.1:-33412906 | MS.gene40678:CDS |
| AAATGGGTTTGAGTATACAT+GGG | 0.586456 | 4.1:-33414704 | MS.gene40678:CDS |
| GAACGTCGATGCGAGTGGCG+GGG | 0.586973 | 4.1:+33415820 | None:intergenic |
| GTTTGCGACTATATTCTTGG+TGG | 0.588117 | 4.1:-33413542 | MS.gene40678:CDS |
| CGTTGATACAACTTGCCCGT+GGG | 0.588283 | 4.1:-33413924 | MS.gene40678:CDS |
| AGGAACGTCGATGCGAGTGG+CGG | 0.589279 | 4.1:+33415818 | None:intergenic |
| ATAGATACCTTTGAAACCCA+CGG | 0.589835 | 4.1:+33413908 | None:intergenic |
| CTTTGATCCAGACAGTGACC+TGG | 0.605562 | 4.1:-33413369 | MS.gene40678:CDS |
| TGGTGCATCCACACCTGACA+AGG | 0.608493 | 4.1:-33412442 | MS.gene40678:intron |
| AGTGAGAATTATAACCGCAA+AGG | 0.609945 | 4.1:-33415699 | MS.gene40678:CDS |
| CAAGAGATAGCCGAGGAACG+CGG | 0.611703 | 4.1:-33412818 | MS.gene40678:CDS |
| TGCGAGTGGCGGGGAGACGT+AGG | 0.612473 | 4.1:+33415829 | None:intergenic |
| TTGCGGCAACGGAAAGTGGA+CGG | 0.613001 | 4.1:+33415792 | None:intergenic |
| AGATGCTATTTACAAGCTGG+TGG | 0.615477 | 4.1:-33412903 | MS.gene40678:CDS |
| TCGTTGATACAACTTGCCCG+TGG | 0.618282 | 4.1:-33413925 | MS.gene40678:CDS |
| AATCAGACAACAATGCTCAA+GGG | 0.621380 | 4.1:-33413329 | MS.gene40678:CDS |
| CAATTTGAGGTTGTCAACAA+GGG | 0.624367 | 4.1:-33414022 | MS.gene40678:CDS |
| TAGATACCTTTGAAACCCAC+GGG | 0.624793 | 4.1:+33413909 | None:intergenic |
| AAGGGAGAGACTGAAGAGAT+CGG | 0.626047 | 4.1:-33413311 | MS.gene40678:intron |
| AGAAGGAACGTCGATGCGAG+TGG | 0.627790 | 4.1:+33415815 | None:intergenic |
| GGAGTCGGTGGAGCAACGGA+CGG | 0.629411 | 4.1:+33415761 | None:intergenic |
| AGAATATTCCTATTGGAGAA+GGG | 0.631143 | 4.1:-33414051 | MS.gene40678:CDS |
| ATATTTACCATGAATTATCG+AGG | 0.639141 | 4.1:+33413743 | None:intergenic |
| TATGATGCGCAAATATGGCG+TGG | 0.639235 | 4.1:-33413168 | MS.gene40678:CDS |
| TTATAGGCAGACTAGTGGAG+AGG | 0.648372 | 4.1:-33413193 | MS.gene40678:intron |
| TCATGGTAAATATGCCCATG+AGG | 0.657612 | 4.1:-33413733 | MS.gene40678:CDS |
| AATGGGTTTGAGTATACATG+GGG | 0.674771 | 4.1:-33414703 | MS.gene40678:CDS |
| TGGATCCAGTTCAACCAGAG+AGG | 0.678385 | 4.1:-33413510 | MS.gene40678:CDS |
| AGTCAACATCTCGTCAACTG+CGG | 0.691748 | 4.1:+33413970 | None:intergenic |
| ACACCTACAAGAGATAGCCG+AGG | 0.737129 | 4.1:-33412825 | MS.gene40678:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAGTCGTAAAATAAATA+TGG | - | chr4.1:33413666-33413685 | MS.gene40678:intron | 15.0% |
| !! | AAAAGTCGTAAAATAAATAT+GGG | - | chr4.1:33413667-33413686 | MS.gene40678:intron | 15.0% |
| !! | ATACATAATTGTGAAAAATA+TGG | - | chr4.1:33414301-33414320 | MS.gene40678:intron | 15.0% |
| !! | TAAAATAAATATGGGTATAT+TGG | - | chr4.1:33413675-33413694 | MS.gene40678:CDS | 15.0% |
| !!! | CAACTTTTTTATTAGAATAA+TGG | + | chr4.1:33415031-33415050 | None:intergenic | 15.0% |
| !!! | TATTTTGTTGATCATTTTAT+AGG | - | chr4.1:33414771-33414790 | MS.gene40678:intron | 15.0% |
| !! | AATATACCTTATTAACAGTT+GGG | + | chr4.1:33413435-33413454 | None:intergenic | 20.0% |
| !! | AATTTCCTGATGAAAAAATT+TGG | - | chr4.1:33413386-33413405 | MS.gene40678:CDS | 20.0% |
| !! | ATTGCTTGATTTCATATTTA+TGG | + | chr4.1:33415340-33415359 | None:intergenic | 20.0% |
| !! | CAATTAATCATGTAAAATGA+CGG | + | chr4.1:33413856-33413875 | None:intergenic | 20.0% |
| !! | GCATTAAAAAAAACTTAGAT+TGG | + | chr4.1:33415761-33415780 | None:intergenic | 20.0% |
| !! | TATAGGAATAATTAATGTAG+TGG | - | chr4.1:33413698-33413717 | MS.gene40678:CDS | 20.0% |
| !! | TTTAAAAAAACTAACAAGAG+TGG | + | chr4.1:33415610-33415629 | None:intergenic | 20.0% |
| !!! | CTATATTCTCATAAGTTTTT+CGG | - | chr4.1:33413000-33413019 | MS.gene40678:intron | 20.0% |
| !!! | TGTGAATCTATAAAAACTTT+TGG | - | chr4.1:33415580-33415599 | MS.gene40678:intron | 20.0% |
| ! | AAAAATTCAGAGATCAATGA+AGG | + | chr4.1:33413470-33413489 | None:intergenic | 25.0% |
| ! | AAAGAAAACTTTCTACCAAA+GGG | - | chr4.1:33415491-33415510 | MS.gene40678:intron | 25.0% |
| ! | AAATATGGGTATATTGGTAT+AGG | - | chr4.1:33413681-33413700 | MS.gene40678:CDS | 25.0% |
| ! | ACAAAATACATATCACAGTT+AGG | + | chr4.1:33414759-33414778 | None:intergenic | 25.0% |
| ! | ACATAAGATGAGAAATTTGA+TGG | - | chr4.1:33412672-33412691 | MS.gene40678:intron | 25.0% |
| ! | ATATTTACCATGAATTATCG+AGG | + | chr4.1:33414240-33414259 | None:intergenic | 25.0% |
| ! | ATTTAAATTTGCCCTTTCTA+AGG | - | chr4.1:33414587-33414606 | MS.gene40678:CDS | 25.0% |
| ! | CAAATAATCACAACATTGAA+GGG | + | chr4.1:33414550-33414569 | None:intergenic | 25.0% |
| ! | CTTGATGTTATTGCTTATTT+GGG | - | chr4.1:33414908-33414927 | MS.gene40678:intron | 25.0% |
| ! | GAAATAATCTCAGTATTTGT+TGG | + | chr4.1:33414158-33414177 | None:intergenic | 25.0% |
| ! | GAATATACCTTATTAACAGT+TGG | + | chr4.1:33413436-33413455 | None:intergenic | 25.0% |
| ! | TATTATCAGCAAAAACTGAA+TGG | + | chr4.1:33415737-33415756 | None:intergenic | 25.0% |
| ! | TCAAATAATCACAACATTGA+AGG | + | chr4.1:33414551-33414570 | None:intergenic | 25.0% |
| ! | TTAGAATTTAAAGGATTGTC+CGG | - | chr4.1:33412528-33412547 | MS.gene40678:intron | 25.0% |
| ! | TTTAAATTTGCCCTTTCTAA+GGG | - | chr4.1:33414588-33414607 | MS.gene40678:CDS | 25.0% |
| !! | AATGTAGTGGAAAATTCAAA+GGG | - | chr4.1:33413711-33413730 | MS.gene40678:CDS | 25.0% |
| !! | ACAAAGAAATTTTCTCAAGA+AGG | - | chr4.1:33413750-33413769 | MS.gene40678:CDS | 25.0% |
| !! | ACTACAATATCTTCAAGTTA+AGG | + | chr4.1:33414379-33414398 | None:intergenic | 25.0% |
| !! | ATTAAGACTTTGAAGGAAAA+TGG | - | chr4.1:33413259-33413278 | MS.gene40678:intron | 25.0% |
| !! | CATCTGCTAACATTTTTATT+GGG | + | chr4.1:33412980-33412999 | None:intergenic | 25.0% |
| !! | CTTCTGCTAACATTTTTATT+GGG | - | chr4.1:33412790-33412809 | MS.gene40678:CDS | 25.0% |
| !! | TAATGTAGTGGAAAATTCAA+AGG | - | chr4.1:33413710-33413729 | MS.gene40678:CDS | 25.0% |
| !! | TCAAGAAGGTCTTATATTTA+GGG | - | chr4.1:33413764-33413783 | MS.gene40678:CDS | 25.0% |
| !! | TGTGTAATGAAATATGCTTT+TGG | - | chr4.1:33415653-33415672 | MS.gene40678:CDS | 25.0% |
| !! | TTAAGACTTTGAAGGAAAAT+GGG | - | chr4.1:33413260-33413279 | MS.gene40678:intron | 25.0% |
| !! | TTTTTATAGATTCACATGCA+AGG | + | chr4.1:33415576-33415595 | None:intergenic | 25.0% |
| !!! | AGAGACACTTTAGAATTTAA+AGG | - | chr4.1:33412519-33412538 | MS.gene40678:intron | 25.0% |
| !!! | CAGTCTTATTCAAATAAAGT+CGG | + | chr4.1:33413062-33413081 | None:intergenic | 25.0% |
| !!! | GTAATCCAAATTTTTTCATC+AGG | + | chr4.1:33413394-33413413 | None:intergenic | 25.0% |
| !!! | TAATGCTTATTTTGCATCAT+TGG | - | chr4.1:33415775-33415794 | MS.gene40678:CDS | 25.0% |
| !!! | TATACACTTTTTGCAATTTC+AGG | - | chr4.1:33413229-33413248 | MS.gene40678:intron | 25.0% |
| !!! | TTTGTTGTTCAATTGATTTG+TGG | - | chr4.1:33412702-33412721 | MS.gene40678:intron | 25.0% |
| AAATAAGTCAATCCAAACAG+AGG | - | chr4.1:33412946-33412965 | MS.gene40678:intron | 30.0% | |
| AATTGTGAAAAATATGGCAG+AGG | - | chr4.1:33414307-33414326 | MS.gene40678:intron | 30.0% | |
| ACTTGATGAGGTATAAATCT+TGG | + | chr4.1:33415402-33415421 | None:intergenic | 30.0% | |
| AGAATATTCCTATTGGAGAA+GGG | - | chr4.1:33413929-33413948 | MS.gene40678:CDS | 30.0% | |
| ATAAGAGAGATTTATTGACC+AGG | - | chr4.1:33415265-33415284 | MS.gene40678:intron | 30.0% | |
| ATAAGTTTATCCATCAAGAG+AGG | - | chr4.1:33413599-33413618 | MS.gene40678:intron | 30.0% | |
| ATGGATCTTATGTTAGTTGT+TGG | - | chr4.1:33415108-33415127 | MS.gene40678:intron | 30.0% | |
| ATTTCCATGATTTGACTAAG+AGG | + | chr4.1:33413530-33413549 | None:intergenic | 30.0% | |
| CAAAGGGGATCTTATAAAAA+GGG | - | chr4.1:33413727-33413746 | MS.gene40678:CDS | 30.0% | |
| CATAATTGACAAATTCATCC+AGG | - | chr4.1:33414407-33414426 | MS.gene40678:intron | 30.0% | |
| CCAAATAAGCAATAACATCA+AGG | + | chr4.1:33414910-33414929 | None:intergenic | 30.0% | |
| CCTTGATGTTATTGCTTATT+TGG | - | chr4.1:33414907-33414926 | MS.gene40678:intron | 30.0% | |
| GAAAGAAAACTTTCTACCAA+AGG | - | chr4.1:33415490-33415509 | MS.gene40678:intron | 30.0% | |
| GAAAGTAACACACTTTATGA+TGG | + | chr4.1:33412482-33412501 | None:intergenic | 30.0% | |
| GTGTTGAACTTCTTTAGATA+TGG | - | chr4.1:33412767-33412786 | MS.gene40678:CDS | 30.0% | |
| GTTGAATTGAATTTCCTTTC+AGG | - | chr4.1:33415047-33415066 | MS.gene40678:intron | 30.0% | |
| TAAGTTTATCCATCAAGAGA+GGG | - | chr4.1:33413600-33413619 | MS.gene40678:intron | 30.0% | |
| TAGAATAATGGCATACAGAA+TGG | + | chr4.1:33415019-33415038 | None:intergenic | 30.0% | |
| TATGTTTGCGACTATATTCT+TGG | - | chr4.1:33414435-33414454 | MS.gene40678:intron | 30.0% | |
| TATTGAACTAAGGTCTTCTT+TGG | + | chr4.1:33413173-33413192 | None:intergenic | 30.0% | |
| TCAAAGGGGATCTTATAAAA+AGG | - | chr4.1:33413726-33413745 | MS.gene40678:CDS | 30.0% | |
| TCGCTAATTGAGTTTCTTAT+CGG | - | chr4.1:33412401-33412420 | MS.gene40678:intron | 30.0% | |
| TGACATCATTAAGACTTTGA+AGG | - | chr4.1:33413252-33413271 | MS.gene40678:intron | 30.0% | |
| TGAGGTATAAATCTTGGATT+TGG | + | chr4.1:33415396-33415415 | None:intergenic | 30.0% | |
| TTCTTCGATGAATTGTTTGA+AGG | - | chr4.1:33414175-33414194 | MS.gene40678:intron | 30.0% | |
| TTTCCATGATTTGACTAAGA+GGG | + | chr4.1:33413529-33413548 | None:intergenic | 30.0% | |
| ! | AAAATGGGTTTGAGTATACA+TGG | - | chr4.1:33413275-33413294 | MS.gene40678:intron | 30.0% |
| ! | AAATGGGTTTGAGTATACAT+GGG | - | chr4.1:33413276-33413295 | MS.gene40678:intron | 30.0% |
| ! | AATATGTTTTTCTGTCGCAA+TGG | - | chr4.1:33414993-33415012 | MS.gene40678:intron | 30.0% |
| ! | ACACACTTTATGATGGAAAA+CGG | + | chr4.1:33412475-33412494 | None:intergenic | 30.0% |
| ! | ATGTAGTGGAAAATTCAAAG+GGG | - | chr4.1:33413712-33413731 | MS.gene40678:CDS | 30.0% |
| ! | CTCAAGAAGGTCTTATATTT+AGG | - | chr4.1:33413763-33413782 | MS.gene40678:CDS | 30.0% |
| ! | GCATCTGCTAACATTTTTAT+TGG | + | chr4.1:33412981-33413000 | None:intergenic | 30.0% |
| ! | GCTTATTTGAGTTTATCTAG+TGG | - | chr4.1:33412836-33412855 | MS.gene40678:CDS | 30.0% |
| ! | GCTTCTGCTAACATTTTTAT+TGG | - | chr4.1:33412789-33412808 | MS.gene40678:CDS | 30.0% |
| ! | TATCTTTTCATCTTTCAGCA+TGG | - | chr4.1:33415455-33415474 | MS.gene40678:intron | 30.0% |
| ! | TGACTTATTTGAGTTTATCG+TGG | + | chr4.1:33412936-33412955 | None:intergenic | 30.0% |
| !! | AAAGTGTGTTACTTTCTAGT+TGG | - | chr4.1:33412486-33412505 | MS.gene40678:CDS | 30.0% |
| !! | AAGTGTGTTACTTTCTAGTT+GGG | - | chr4.1:33412487-33412506 | MS.gene40678:CDS | 30.0% |
| !! | AGAAAGTACTTCATAGAGTT+TGG | - | chr4.1:33412648-33412667 | MS.gene40678:intron | 30.0% |
| !! | ATTCTTGGTGGTGAATTTAA+TGG | - | chr4.1:33414450-33414469 | MS.gene40678:intron | 30.0% |
| !!! | ATTTTTTTGCTGTGGAGTTA+AGG | - | chr4.1:33414696-33414715 | MS.gene40678:CDS | 30.0% |
| !!! | TTTTTTTGCTGTGGAGTTAA+GGG | - | chr4.1:33414697-33414716 | MS.gene40678:CDS | 30.0% |
| AAAAGAGCAAACACTTGATG+AGG | + | chr4.1:33415414-33415433 | None:intergenic | 35.0% | |
| AAATAAGCCAATCCAAACAG+AGG | + | chr4.1:33412824-33412843 | None:intergenic | 35.0% | |
| AAATCAGACAACAATGCTCA+AGG | - | chr4.1:33414650-33414669 | MS.gene40678:CDS | 35.0% | |
| AAATTAACTCCCTCTCTTGA+TGG | + | chr4.1:33413612-33413631 | None:intergenic | 35.0% | |
| AATCAGACAACAATGCTCAA+GGG | - | chr4.1:33414651-33414670 | MS.gene40678:CDS | 35.0% | |
| AATTATAACCGCAAAGGCTT+TGG | - | chr4.1:33412287-33412306 | MS.gene40678:intron | 35.0% | |
| ACTAAGAGGGTCCTATATTT+AGG | + | chr4.1:33413516-33413535 | None:intergenic | 35.0% | |
| AGAAGGGAAGAAACAATTTG+AGG | - | chr4.1:33413945-33413964 | MS.gene40678:CDS | 35.0% | |
| AGTGAGAATTATAACCGCAA+AGG | - | chr4.1:33412281-33412300 | MS.gene40678:intron | 35.0% | |
| ATGTTTACTGTATCAGATCC+TGG | + | chr4.1:33415286-33415305 | None:intergenic | 35.0% | |
| ATTTATGCCTCTGTTTGGAT+TGG | - | chr4.1:33412814-33412833 | MS.gene40678:CDS | 35.0% | |
| CACTTCTTGTGAGATTCTTA+CGG | + | chr4.1:33412265-33412284 | None:intergenic | 35.0% | |
| CAGAATATTCCTATTGGAGA+AGG | - | chr4.1:33413928-33413947 | MS.gene40678:CDS | 35.0% | |
| CCAACAAAATCCAAAGGATT+CGG | + | chr4.1:33413323-33413342 | None:intergenic | 35.0% | |
| CGATGAATTGTTTGAAGGTA+TGG | - | chr4.1:33414180-33414199 | MS.gene40678:intron | 35.0% | |
| CTAAGAGGGTCCTATATTTA+GGG | + | chr4.1:33413515-33413534 | None:intergenic | 35.0% | |
| GAAGTGCAGAATATTCCTAT+TGG | - | chr4.1:33413922-33413941 | MS.gene40678:CDS | 35.0% | |
| GACTATACCTCGATAATTCA+TGG | - | chr4.1:33414230-33414249 | MS.gene40678:intron | 35.0% | |
| GATCTTATGTTAGTTGTTGG+TGG | - | chr4.1:33415111-33415130 | MS.gene40678:intron | 35.0% | |
| GATGTTACACCAATCCTTAA+TGG | + | chr4.1:33415518-33415537 | None:intergenic | 35.0% | |
| TATACTCCGTCCCTAAATAT+AGG | - | chr4.1:33413502-33413521 | MS.gene40678:CDS | 35.0% | |
| TGGGTTGTGGATAATTTCAT+TGG | + | chr4.1:33413416-33413435 | None:intergenic | 35.0% | |
| TTCAAATTGCTTATGAAGCC+AGG | - | chr4.1:33413359-33413378 | MS.gene40678:CDS | 35.0% | |
| TTCATCAGGAAATTGTTTCC+TGG | + | chr4.1:33413380-33413399 | None:intergenic | 35.0% | |
| TTGACTACTATCAGCAACTA+AGG | + | chr4.1:33414338-33414357 | None:intergenic | 35.0% | |
| TTGTATGCTATTCTGTTTCC+TGG | + | chr4.1:33415228-33415247 | None:intergenic | 35.0% | |
| ! | AAATGTAATAAGTGTCGTGC+CGG | + | chr4.1:33412571-33412590 | None:intergenic | 35.0% |
| ! | AATCCTTTGGATTTTGTTGG+GGG | - | chr4.1:33413323-33413342 | MS.gene40678:CDS | 35.0% |
| ! | AATGGGTTTGAGTATACATG+GGG | - | chr4.1:33413277-33413296 | MS.gene40678:intron | 35.0% |
| ! | ACAAGATGCTATTTACAAGC+TGG | - | chr4.1:33415074-33415093 | MS.gene40678:intron | 35.0% |
| ! | ACAATTTGAGGTTGTCAACA+AGG | - | chr4.1:33413957-33413976 | MS.gene40678:CDS | 35.0% |
| ! | AGACTGTTTGAGACAGTTAA+CGG | - | chr4.1:33412873-33412892 | MS.gene40678:CDS | 35.0% |
| ! | AGATCTAAAACTGTGTGACA+TGG | - | chr4.1:33415362-33415381 | MS.gene40678:intron | 35.0% |
| ! | AGATTCTTACGGAAGAGTTT+TGG | + | chr4.1:33412254-33412273 | None:intergenic | 35.0% |
| ! | CAATTTGAGGTTGTCAACAA+GGG | - | chr4.1:33413958-33413977 | MS.gene40678:CDS | 35.0% |
| ! | CGAATCCTTTGGATTTTGTT+GGG | - | chr4.1:33413321-33413340 | MS.gene40678:CDS | 35.0% |
| ! | GAATCCTTTGGATTTTGTTG+GGG | - | chr4.1:33413322-33413341 | MS.gene40678:CDS | 35.0% |
| ! | GATTCTTACGGAAGAGTTTT+GGG | + | chr4.1:33412253-33412272 | None:intergenic | 35.0% |
| ! | GTTGTCGAAAAGCACAAAAA+AGG | - | chr4.1:33414206-33414225 | MS.gene40678:intron | 35.0% |
| ! | TCATTTTATAGGCAGACTAG+TGG | - | chr4.1:33414782-33414801 | MS.gene40678:intron | 35.0% |
| ! | TCTAAAGTGTCTCTGATACA+TGG | + | chr4.1:33412513-33412532 | None:intergenic | 35.0% |
| ! | TTAAGGATTGGTGTAACATC+TGG | - | chr4.1:33415518-33415537 | MS.gene40678:intron | 35.0% |
| !! | ATAGATACCTTTGAAACCCA+CGG | + | chr4.1:33414075-33414094 | None:intergenic | 35.0% |
| !! | GTTCAATTGATTTGTGGAGA+TGG | - | chr4.1:33412708-33412727 | MS.gene40678:intron | 35.0% |
| !!! | GAAGAGTTTTGGGTCAAAAT+CGG | + | chr4.1:33412243-33412262 | None:intergenic | 35.0% |
| !!! | TCGGTTAGATTTTTTTGCTG+TGG | - | chr4.1:33414688-33414707 | MS.gene40678:CDS | 35.0% |
| AGAAAATACCTTGTCAGGTG+TGG | + | chr4.1:33415549-33415568 | None:intergenic | 40.0% | |
| AGCAAAAGATGCAGTTGCTA+CGG | + | chr4.1:33414276-33414295 | None:intergenic | 40.0% | |
| AGCAAGATCAACTACAAGAC+AGG | + | chr4.1:33414520-33414539 | None:intergenic | 40.0% | |
| AGGACTATGATGCGCAAATA+TGG | - | chr4.1:33414807-33414826 | MS.gene40678:intron | 40.0% | |
| ATTGACAGCGAGCATAGAAT+TGG | - | chr4.1:33415201-33415220 | MS.gene40678:intron | 40.0% | |
| CACAATTTGTGATGCTACTC+AGG | - | chr4.1:33414866-33414885 | MS.gene40678:intron | 40.0% | |
| CCACAACCCAACTGTTAATA+AGG | - | chr4.1:33413426-33413445 | MS.gene40678:intron | 40.0% | |
| CGCACACACATATTGAACTA+AGG | + | chr4.1:33413183-33413202 | None:intergenic | 40.0% | |
| GCAAGAGAAAATACCTTGTC+AGG | + | chr4.1:33415554-33415573 | None:intergenic | 40.0% | |
| GTTTGCGACTATATTCTTGG+TGG | - | chr4.1:33414438-33414457 | MS.gene40678:intron | 40.0% | |
| TATTTACAAGCTGGTGGAGA+AGG | - | chr4.1:33415083-33415102 | MS.gene40678:intron | 40.0% | |
| TCATGGTAAATATGCCCATG+AGG | - | chr4.1:33414247-33414266 | MS.gene40678:intron | 40.0% | |
| TCATGTAAAATGACGGCATG+TGG | + | chr4.1:33413849-33413868 | None:intergenic | 40.0% | |
| TGCATCATTGGATTTCACAC+AGG | - | chr4.1:33415787-33415806 | MS.gene40678:CDS | 40.0% | |
| TGGATCAAAGCCCTTAGAAA+GGG | + | chr4.1:33414601-33414620 | None:intergenic | 40.0% | |
| TGGGAATTTATGCCTCTGTT+TGG | - | chr4.1:33412809-33412828 | MS.gene40678:CDS | 40.0% | |
| TGTTTCTTCCCTTCTCCAAT+AGG | + | chr4.1:33413940-33413959 | None:intergenic | 40.0% | |
| TTCTACCAAAGGGTCCATTA+AGG | - | chr4.1:33415501-33415520 | MS.gene40678:intron | 40.0% | |
| ! | AGATGCTATTTACAAGCTGG+TGG | - | chr4.1:33415077-33415096 | MS.gene40678:intron | 40.0% |
| ! | ATCCTTTGGATTTTGTTGGG+GGG | - | chr4.1:33413324-33413343 | MS.gene40678:CDS | 40.0% |
| ! | CCGAATCCTTTGGATTTTGT+TGG | - | chr4.1:33413320-33413339 | MS.gene40678:CDS | 40.0% |
| ! | CCTTATTAACAGTTGGGTTG+TGG | + | chr4.1:33413429-33413448 | None:intergenic | 40.0% |
| ! | TTGCAATGCCAAGTTTTACC+AGG | + | chr4.1:33414632-33414651 | None:intergenic | 40.0% |
| !! | TAGATACCTTTGAAACCCAC+GGG | + | chr4.1:33414074-33414093 | None:intergenic | 40.0% |
| !! | TTATGTTAGTTGTTGGTGGC+TGG | - | chr4.1:33415115-33415134 | MS.gene40678:intron | 40.0% |
| !! | TTTTGGGTCAAAATCGGAGT+CGG | + | chr4.1:33412237-33412256 | None:intergenic | 40.0% |
| AAATGCCTCTCTGGTTGAAC+TGG | + | chr4.1:33414478-33414497 | None:intergenic | 45.0% | |
| AACCCCCCAACAAAATCCAA+AGG | + | chr4.1:33413329-33413348 | None:intergenic | 45.0% | |
| AACCTCGAAAAATGCCTCTC+TGG | + | chr4.1:33414487-33414506 | None:intergenic | 45.0% | |
| AACGCGGAATTCCTTCTTAC+TGG | - | chr4.1:33415178-33415197 | MS.gene40678:intron | 45.0% | |
| AAGGGAGAGACTGAAGAGAT+CGG | - | chr4.1:33414669-33414688 | MS.gene40678:CDS | 45.0% | |
| ACGGCATGTGGAAGAAAACA+AGG | + | chr4.1:33413837-33413856 | None:intergenic | 45.0% | |
| ACTCGCGATTCATGAGTTTG+AGG | + | chr4.1:33412328-33412347 | None:intergenic | 45.0% | |
| AGCATCTTGTCGTTCCTGAA+AGG | + | chr4.1:33415064-33415083 | None:intergenic | 45.0% | |
| AGTCAACATCTCGTCAACTG+CGG | + | chr4.1:33414013-33414032 | None:intergenic | 45.0% | |
| AGTCGCAAACATATTCAGCC+TGG | + | chr4.1:33414428-33414447 | None:intergenic | 45.0% | |
| AGTTGCTACGGTTTCCTCAT+GGG | + | chr4.1:33414264-33414283 | None:intergenic | 45.0% | |
| ATTGGATTTCACACAGGTCG+TGG | - | chr4.1:33415793-33415812 | MS.gene40678:CDS | 45.0% | |
| CAGAGATCAATGAAGGCGAT+AGG | + | chr4.1:33413463-33413482 | None:intergenic | 45.0% | |
| CCAAAGGGTCCATTAAGGAT+TGG | - | chr4.1:33415506-33415525 | MS.gene40678:intron | 45.0% | |
| CTCGCGATTCATGAGTTTGA+GGG | + | chr4.1:33412327-33412346 | None:intergenic | 45.0% | |
| CTGGATCAAAGCCCTTAGAA+AGG | + | chr4.1:33414602-33414621 | None:intergenic | 45.0% | |
| GACAGTGACCTGGTAAAACT+TGG | - | chr4.1:33414621-33414640 | MS.gene40678:CDS | 45.0% | |
| GAGGGTCCTATATTTAGGGA+CGG | + | chr4.1:33413511-33413530 | None:intergenic | 45.0% | |
| GGACCCTCTTAGTCAAATCA+TGG | - | chr4.1:33413523-33413542 | MS.gene40678:CDS | 45.0% | |
| TATGATGCGCAAATATGGCG+TGG | - | chr4.1:33414812-33414831 | MS.gene40678:intron | 45.0% | |
| TCGCTGTCAATCCAGTAAGA+AGG | + | chr4.1:33415192-33415211 | None:intergenic | 45.0% | |
| TGGGACTTTATGCCTCTGTT+TGG | + | chr4.1:33412961-33412980 | None:intergenic | 45.0% | |
| TTATAGGCAGACTAGTGGAG+AGG | - | chr4.1:33414787-33414806 | MS.gene40678:intron | 45.0% | |
| ! | AGTTTTACCAGGTCACTGTC+TGG | + | chr4.1:33414621-33414640 | None:intergenic | 45.0% |
| ! | ATTTTGTTGGGGGGTTGAGA+GGG | - | chr4.1:33413333-33413352 | MS.gene40678:CDS | 45.0% |
| ! | CCAATCCTTAATGGACCCTT+TGG | + | chr4.1:33415509-33415528 | None:intergenic | 45.0% |
| ! | GTAGCAACTGCATCTTTTGC+TGG | - | chr4.1:33414275-33414294 | MS.gene40678:intron | 45.0% |
| ! | GTAGTCATACTGCCTGCTTT+TGG | - | chr4.1:33413985-33414004 | MS.gene40678:CDS | 45.0% |
| ! | GTGCTTGATGATTGATGCAG+CGG | - | chr4.1:33413887-33413906 | MS.gene40678:intron | 45.0% |
| !! | GGAAGAAAACAAGGCACTGA+CGG | + | chr4.1:33413828-33413847 | None:intergenic | 45.0% |
| !!! | AACCAGAGAGGCATTTTTCG+AGG | - | chr4.1:33414482-33414501 | MS.gene40678:intron | 45.0% |
| AACGGACGGAGAAGAGTTTG+CGG | + | chr4.1:33412208-33412227 | None:intergenic | 50.0% | |
| AACTTGCCCGTGGGTTTCAA+AGG | - | chr4.1:33414065-33414084 | MS.gene40678:CDS | 50.0% | |
| ACACCTACAAGAGATAGCCG+AGG | - | chr4.1:33415155-33415174 | MS.gene40678:intron | 50.0% | |
| AGAAGGAATTCCGCGTTCCT+CGG | + | chr4.1:33415175-33415194 | None:intergenic | 50.0% | |
| AGCGAGCATAGAATTGGTCC+AGG | - | chr4.1:33415207-33415226 | MS.gene40678:intron | 50.0% | |
| ATGATTGATGCAGCGGCTAG+AGG | - | chr4.1:33413894-33413913 | MS.gene40678:intron | 50.0% | |
| CAAGCTGGTGGAGAAGGATA+TGG | - | chr4.1:33415089-33415108 | MS.gene40678:intron | 50.0% | |
| CAGTTGCTACGGTTTCCTCA+TGG | + | chr4.1:33414265-33414284 | None:intergenic | 50.0% | |
| CCTTGTGACCAAAGCCTTTG+CGG | + | chr4.1:33412298-33412317 | None:intergenic | 50.0% | |
| CGTGGAAGATGCGCTTATCA+AGG | - | chr4.1:33415811-33415830 | MS.gene40678:CDS | 50.0% | |
| CGTTGATACAACTTGCCCGT+GGG | - | chr4.1:33414056-33414075 | MS.gene40678:CDS | 50.0% | |
| CTTTGATCCAGACAGTGACC+TGG | - | chr4.1:33414611-33414630 | MS.gene40678:CDS | 50.0% | |
| GTGATGCTAGCCGAATCCTT+TGG | - | chr4.1:33413310-33413329 | MS.gene40678:intron | 50.0% | |
| GTTCCTCGGCTATCTCTTGT+AGG | + | chr4.1:33415161-33415180 | None:intergenic | 50.0% | |
| TCGTTGATACAACTTGCCCG+TGG | - | chr4.1:33414055-33414074 | MS.gene40678:CDS | 50.0% | |
| TGGATCCAGTTCAACCAGAG+AGG | - | chr4.1:33414470-33414489 | MS.gene40678:intron | 50.0% | |
| ! | AATAAGTGTCGTGCCGGTGT+CGG | + | chr4.1:33412565-33412584 | None:intergenic | 50.0% |
| ! | GATTTTGTTGGGGGGTTGAG+AGG | - | chr4.1:33413332-33413351 | MS.gene40678:CDS | 50.0% |
| AATCGGAGTCGGTGGAGCAA+CGG | + | chr4.1:33412226-33412245 | None:intergenic | 55.0% | |
| AGAAGGAACGTCGATGCGAG+TGG | + | chr4.1:33412168-33412187 | None:intergenic | 55.0% | |
| CAACGGAAAGTGGACGGAGA+AGG | + | chr4.1:33412185-33412204 | None:intergenic | 55.0% | |
| CAAGAGATAGCCGAGGAACG+CGG | - | chr4.1:33415162-33415181 | MS.gene40678:intron | 55.0% | |
| CGGAGAAGAGTTTGCGGCAA+CGG | + | chr4.1:33412202-33412221 | None:intergenic | 55.0% | |
| CTTTCAGCATGGCGAGCTTG+TGG | - | chr4.1:33415466-33415485 | MS.gene40678:intron | 55.0% | |
| GAGTTTGCGGCAACGGAAAG+TGG | + | chr4.1:33412195-33412214 | None:intergenic | 55.0% | |
| GGTGTGTATGTGTCCGACAC+CGG | - | chr4.1:33412549-33412568 | MS.gene40678:intron | 55.0% | |
| TCAACTGCGGCTCCAAAAGC+AGG | + | chr4.1:33414000-33414019 | None:intergenic | 55.0% | |
| TGGGTCAAAATCGGAGTCGG+TGG | + | chr4.1:33412234-33412253 | None:intergenic | 55.0% | |
| TGGTGCATCCACACCTGACA+AGG | - | chr4.1:33415538-33415557 | MS.gene40678:intron | 55.0% | |
| TTGCGGCAACGGAAAGTGGA+CGG | + | chr4.1:33412191-33412210 | None:intergenic | 55.0% | |
| ! | CCGCAAAGGCTTTGGTCACA+AGG | - | chr4.1:33412295-33412314 | MS.gene40678:intron | 55.0% |
| ! | GGTGTCGGACACATACACAC+CGG | + | chr4.1:33412550-33412569 | None:intergenic | 55.0% |
| AGGAACGTCGATGCGAGTGG+CGG | + | chr4.1:33412165-33412184 | None:intergenic | 60.0% | |
| GATGCAGCGGCTAGAGGAGA+TGG | - | chr4.1:33413900-33413919 | MS.gene40678:intron | 60.0% | |
| GAACGTCGATGCGAGTGGCG+GGG | + | chr4.1:33412163-33412182 | None:intergenic | 65.0% | |
| GGAACGTCGATGCGAGTGGC+GGG | + | chr4.1:33412164-33412183 | None:intergenic | 65.0% | |
| GGAGTCGGTGGAGCAACGGA+CGG | + | chr4.1:33412222-33412241 | None:intergenic | 65.0% | |
| ! | TGCGAGTGGCGGGGAGACGT+AGG | + | chr4.1:33412154-33412173 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 33412128 | 33415874 | 33412128 | ID=MS.gene40678 |
| chr4.1 | mRNA | 33412128 | 33415874 | 33412128 | ID=MS.gene40678.t1;Parent=MS.gene40678 |
| chr4.1 | exon | 33415649 | 33415874 | 33415649 | ID=MS.gene40678.t1.exon1;Parent=MS.gene40678.t1 |
| chr4.1 | CDS | 33415649 | 33415874 | 33415649 | ID=cds.MS.gene40678.t1;Parent=MS.gene40678.t1 |
| chr4.1 | exon | 33414555 | 33414751 | 33414555 | ID=MS.gene40678.t1.exon2;Parent=MS.gene40678.t1 |
| chr4.1 | CDS | 33414555 | 33414751 | 33414555 | ID=cds.MS.gene40678.t1;Parent=MS.gene40678.t1 |
| chr4.1 | exon | 33413916 | 33414095 | 33413916 | ID=MS.gene40678.t1.exon3;Parent=MS.gene40678.t1 |
| chr4.1 | CDS | 33413916 | 33414095 | 33413916 | ID=cds.MS.gene40678.t1;Parent=MS.gene40678.t1 |
| chr4.1 | exon | 33413674 | 33413805 | 33413674 | ID=MS.gene40678.t1.exon4;Parent=MS.gene40678.t1 |
| chr4.1 | CDS | 33413674 | 33413805 | 33413674 | ID=cds.MS.gene40678.t1;Parent=MS.gene40678.t1 |
| chr4.1 | exon | 33413499 | 33413573 | 33413499 | ID=MS.gene40678.t1.exon5;Parent=MS.gene40678.t1 |
| chr4.1 | CDS | 33413499 | 33413573 | 33413499 | ID=cds.MS.gene40678.t1;Parent=MS.gene40678.t1 |
| chr4.1 | exon | 33413312 | 33413417 | 33413312 | ID=MS.gene40678.t1.exon6;Parent=MS.gene40678.t1 |
| chr4.1 | CDS | 33413312 | 33413417 | 33413312 | ID=cds.MS.gene40678.t1;Parent=MS.gene40678.t1 |
| chr4.1 | exon | 33413115 | 33413209 | 33413115 | ID=MS.gene40678.t1.exon7;Parent=MS.gene40678.t1 |
| chr4.1 | CDS | 33413115 | 33413209 | 33413115 | ID=cds.MS.gene40678.t1;Parent=MS.gene40678.t1 |
| chr4.1 | exon | 33412748 | 33412933 | 33412748 | ID=MS.gene40678.t1.exon8;Parent=MS.gene40678.t1 |
| chr4.1 | CDS | 33412748 | 33412933 | 33412748 | ID=cds.MS.gene40678.t1;Parent=MS.gene40678.t1 |
| chr4.1 | exon | 33412443 | 33412529 | 33412443 | ID=MS.gene40678.t1.exon9;Parent=MS.gene40678.t1 |
| chr4.1 | CDS | 33412443 | 33412529 | 33412443 | ID=cds.MS.gene40678.t1;Parent=MS.gene40678.t1 |
| chr4.1 | exon | 33412128 | 33412193 | 33412128 | ID=MS.gene40678.t1.exon10;Parent=MS.gene40678.t1 |
| chr4.1 | CDS | 33412128 | 33412193 | 33412128 | ID=cds.MS.gene40678.t1;Parent=MS.gene40678.t1 |
| Gene Sequence |
| Protein sequence |
