Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41729.t1 | XP_013449506.1 | 98.6 | 217 | 2 | 1 | 1 | 216 | 1 | 217 | 8.70E-115 | 422.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41729.t1 | A0A072U1E7 | 98.6 | 217 | 2 | 1 | 1 | 216 | 1 | 217 | 6.3e-115 | 422.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene41729 | 0.81393 | 1.99E-51 | -1.69E-46 |
| MS.gene049254 | MS.gene41729 | 0.843912 | 1.05E-58 | -1.69E-46 |
| MS.gene049283 | MS.gene41729 | 0.806702 | 7.23E-50 | -1.69E-46 |
| MS.gene049499 | MS.gene41729 | 0.814049 | 1.88E-51 | -1.69E-46 |
| MS.gene049786 | MS.gene41729 | 0.819207 | 1.31E-52 | -1.69E-46 |
| MS.gene049983 | MS.gene41729 | 0.840847 | 6.80E-58 | -1.69E-46 |
| MS.gene050654 | MS.gene41729 | 0.83097 | 2.18E-55 | -1.69E-46 |
| MS.gene050657 | MS.gene41729 | 0.810309 | 1.23E-50 | -1.69E-46 |
| MS.gene050737 | MS.gene41729 | 0.814429 | 1.55E-51 | -1.69E-46 |
| MS.gene050759 | MS.gene41729 | 0.823735 | 1.18E-53 | -1.69E-46 |
| MS.gene050826 | MS.gene41729 | 0.809491 | 1.84E-50 | -1.69E-46 |
| MS.gene050941 | MS.gene41729 | 0.818943 | 1.51E-52 | -1.69E-46 |
| MS.gene050962 | MS.gene41729 | 0.812211 | 4.75E-51 | -1.69E-46 |
| MS.gene051122 | MS.gene41729 | 0.807421 | 5.10E-50 | -1.69E-46 |
| MS.gene051147 | MS.gene41729 | 0.813511 | 2.47E-51 | -1.69E-46 |
| MS.gene051490 | MS.gene41729 | 0.813095 | 3.04E-51 | -1.69E-46 |
| MS.gene051541 | MS.gene41729 | 0.80988 | 1.52E-50 | -1.69E-46 |
| MS.gene051924 | MS.gene41729 | -0.809759 | 1.61E-50 | -1.69E-46 |
| MS.gene052463 | MS.gene41729 | 0.848861 | 4.68E-60 | -1.69E-46 |
| MS.gene052493 | MS.gene41729 | 0.861652 | 8.82E-64 | -1.69E-46 |
| MS.gene052534 | MS.gene41729 | 0.828617 | 8.14E-55 | -1.69E-46 |
| MS.gene052582 | MS.gene41729 | 0.800934 | 1.14E-48 | -1.69E-46 |
| MS.gene052586 | MS.gene41729 | 0.816037 | 6.80E-52 | -1.69E-46 |
| MS.gene052674 | MS.gene41729 | 0.836826 | 7.45E-57 | -1.69E-46 |
| MS.gene052675 | MS.gene41729 | 0.830846 | 2.33E-55 | -1.69E-46 |
| MS.gene052677 | MS.gene41729 | 0.832375 | 9.80E-56 | -1.69E-46 |
| MS.gene052773 | MS.gene41729 | 0.805613 | 1.23E-49 | -1.69E-46 |
| MS.gene053298 | MS.gene41729 | 0.800801 | 1.22E-48 | -1.69E-46 |
| MS.gene05350 | MS.gene41729 | 0.81049 | 1.12E-50 | -1.69E-46 |
| MS.gene05423 | MS.gene41729 | 0.817095 | 3.94E-52 | -1.69E-46 |
| MS.gene054291 | MS.gene41729 | -0.80562 | 1.22E-49 | -1.69E-46 |
| MS.gene054467 | MS.gene41729 | 0.808747 | 2.66E-50 | -1.69E-46 |
| MS.gene054468 | MS.gene41729 | 0.838617 | 2.59E-57 | -1.69E-46 |
| MS.gene054479 | MS.gene41729 | 0.854892 | 9.09E-62 | -1.69E-46 |
| MS.gene05458 | MS.gene41729 | 0.805544 | 1.27E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene41729 | 0.807994 | 3.85E-50 | -1.69E-46 |
| MS.gene054892 | MS.gene41729 | 0.805874 | 1.08E-49 | -1.69E-46 |
| MS.gene054893 | MS.gene41729 | 0.802778 | 4.77E-49 | -1.69E-46 |
| MS.gene054991 | MS.gene41729 | 0.801907 | 7.21E-49 | -1.69E-46 |
| MS.gene055327 | MS.gene41729 | 0.800117 | 1.68E-48 | -1.69E-46 |
| MS.gene055513 | MS.gene41729 | 0.827394 | 1.60E-54 | -1.69E-46 |
| MS.gene05552 | MS.gene41729 | 0.836132 | 1.12E-56 | -1.69E-46 |
| MS.gene055864 | MS.gene41729 | 0.838941 | 2.13E-57 | -1.69E-46 |
| MS.gene055926 | MS.gene41729 | 0.829028 | 6.47E-55 | -1.69E-46 |
| MS.gene05604 | MS.gene41729 | 0.801432 | 9.03E-49 | -1.69E-46 |
| MS.gene056480 | MS.gene41729 | 0.813777 | 2.16E-51 | -1.69E-46 |
| MS.gene056699 | MS.gene41729 | 0.819129 | 1.37E-52 | -1.69E-46 |
| MS.gene056776 | MS.gene41729 | 0.819042 | 1.43E-52 | -1.69E-46 |
| MS.gene056779 | MS.gene41729 | 0.826235 | 3.03E-54 | -1.69E-46 |
| MS.gene05690 | MS.gene41729 | 0.803944 | 2.74E-49 | -1.69E-46 |
| MS.gene057026 | MS.gene41729 | 0.819298 | 1.25E-52 | -1.69E-46 |
| MS.gene057155 | MS.gene41729 | 0.816588 | 5.12E-52 | -1.69E-46 |
| MS.gene057208 | MS.gene41729 | 0.80206 | 6.71E-49 | -1.69E-46 |
| MS.gene057611 | MS.gene41729 | 0.800802 | 1.21E-48 | -1.69E-46 |
| MS.gene058081 | MS.gene41729 | 0.84587 | 3.10E-59 | -1.69E-46 |
| MS.gene058223 | MS.gene41729 | -0.816414 | 5.60E-52 | -1.69E-46 |
| MS.gene058429 | MS.gene41729 | 0.816683 | 4.87E-52 | -1.69E-46 |
| MS.gene058625 | MS.gene41729 | 0.808002 | 3.84E-50 | -1.69E-46 |
| MS.gene058897 | MS.gene41729 | 0.800264 | 1.56E-48 | -1.69E-46 |
| MS.gene059170 | MS.gene41729 | 0.800516 | 1.39E-48 | -1.69E-46 |
| MS.gene059283 | MS.gene41729 | 0.829388 | 5.29E-55 | -1.69E-46 |
| MS.gene059440 | MS.gene41729 | 0.804781 | 1.83E-49 | -1.69E-46 |
| MS.gene059952 | MS.gene41729 | 0.823448 | 1.38E-53 | -1.69E-46 |
| MS.gene059965 | MS.gene41729 | 0.804792 | 1.82E-49 | -1.69E-46 |
| MS.gene060011 | MS.gene41729 | 0.80554 | 1.27E-49 | -1.69E-46 |
| MS.gene060122 | MS.gene41729 | -0.807896 | 4.04E-50 | -1.69E-46 |
| MS.gene060322 | MS.gene41729 | 0.818928 | 1.52E-52 | -1.69E-46 |
| MS.gene060373 | MS.gene41729 | 0.817764 | 2.78E-52 | -1.69E-46 |
| MS.gene060435 | MS.gene41729 | 0.842871 | 1.98E-58 | -1.69E-46 |
| MS.gene060520 | MS.gene41729 | 0.808176 | 3.52E-50 | -1.69E-46 |
| MS.gene06052 | MS.gene41729 | 0.872495 | 3.04E-67 | -1.69E-46 |
| MS.gene060802 | MS.gene41729 | 0.80694 | 6.44E-50 | -1.69E-46 |
| MS.gene060850 | MS.gene41729 | 0.821408 | 4.10E-53 | -1.69E-46 |
| MS.gene060851 | MS.gene41729 | 0.8303 | 3.17E-55 | -1.69E-46 |
| MS.gene060852 | MS.gene41729 | 0.831269 | 1.84E-55 | -1.69E-46 |
| MS.gene060932 | MS.gene41729 | 0.86965 | 2.64E-66 | -1.69E-46 |
| MS.gene06121 | MS.gene41729 | 0.814531 | 1.47E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41729.t1 | MTR_7g085680 | 99.078 | 217 | 1 | 1 | 1 | 216 | 1 | 217 | 1.09e-159 | 440 |
| MS.gene41729.t1 | MTR_1g016800 | 38.247 | 251 | 106 | 8 | 12 | 216 | 46 | 293 | 4.68e-43 | 146 |
| MS.gene41729.t1 | MTR_8g070650 | 37.662 | 231 | 109 | 8 | 17 | 216 | 27 | 253 | 3.41e-32 | 117 |
| MS.gene41729.t1 | MTR_6g083920 | 27.442 | 215 | 112 | 4 | 20 | 194 | 17 | 227 | 1.57e-14 | 70.1 |
| MS.gene41729.t1 | MTR_5g056110 | 39.394 | 66 | 40 | 0 | 135 | 200 | 154 | 219 | 1.69e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41729.t1 | AT1G55340 | 55.656 | 221 | 72 | 8 | 4 | 216 | 3 | 205 | 2.51e-70 | 213 |
| MS.gene41729.t1 | AT1G55340 | 54.338 | 219 | 68 | 6 | 4 | 216 | 3 | 195 | 1.99e-68 | 208 |
| MS.gene41729.t1 | AT3G03880 | 54.286 | 210 | 70 | 7 | 13 | 216 | 4 | 193 | 1.98e-63 | 195 |
| MS.gene41729.t1 | AT4G20300 | 43.949 | 157 | 66 | 5 | 82 | 216 | 196 | 352 | 8.10e-30 | 113 |
| MS.gene41729.t1 | AT4G20300 | 43.885 | 139 | 58 | 4 | 82 | 200 | 196 | 334 | 6.10e-26 | 103 |
Find 54 sgRNAs with CRISPR-Local
Find 107 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGCTTCTTTGGATGATTT+TGG | 0.165257 | 7.3:-23283210 | None:intergenic |
| AACTTACCAATAAGCTTCTT+TGG | 0.237998 | 7.3:-23283220 | None:intergenic |
| CTGTTGCCTTACATGCTCTT+TGG | 0.238559 | 7.3:-23282171 | None:intergenic |
| AATCATCCAAAGAAGCTTAT+TGG | 0.258024 | 7.3:+23283214 | MS.gene41729:CDS |
| ATCAGAAGAAAGCTTAATTC+TGG | 0.302031 | 7.3:+23282289 | MS.gene41729:CDS |
| AGGAAGCTTACAACCTTTCA+TGG | 0.340391 | 7.3:-23283168 | None:intergenic |
| GTCAAGAGAGATATGAAGTT+AGG | 0.367836 | 7.3:+23283402 | MS.gene41729:CDS |
| AACAACCTTGTGAGACGATT+AGG | 0.386278 | 7.3:-23282376 | None:intergenic |
| TCTTCTTGCAGTGGGGAAAC+AGG | 0.395699 | 7.3:+23282203 | MS.gene41729:CDS |
| CGGATTTCAACTAGGCTTAA+CGG | 0.415814 | 7.3:+23282259 | MS.gene41729:CDS |
| TCAAGAGAGATATGAAGTTA+GGG | 0.417350 | 7.3:+23283403 | MS.gene41729:CDS |
| TGTTTACAGTTGGTAAGTCC+TGG | 0.420464 | 7.3:+23283359 | MS.gene41729:intron |
| CCCATAGCCTTCAATCCTCT+TGG | 0.424567 | 7.3:-23283553 | None:intergenic |
| GAGGAACCAAAGAGCATGTA+AGG | 0.432240 | 7.3:+23282165 | MS.gene41729:CDS |
| GGAGTGGAGAATCATCGTTC+TGG | 0.453670 | 7.3:+23282310 | MS.gene41729:CDS |
| GGCCGGAGATAACAGAAAAT+CGG | 0.460576 | 7.3:+23282986 | MS.gene41729:CDS |
| CCAAGAGGATTGAAGGCTAT+GGG | 0.481069 | 7.3:+23283553 | MS.gene41729:CDS |
| GCAGAGGCCAAGAGGATTGA+AGG | 0.486507 | 7.3:+23283546 | MS.gene41729:intron |
| GCCAAGAGGATTGAAGGCTA+TGG | 0.494932 | 7.3:+23283552 | MS.gene41729:CDS |
| AACATCGCAAGTGCCTTTAC+CGG | 0.498467 | 7.3:-23283063 | None:intergenic |
| AAGATCCTCGGATTTCAACT+AGG | 0.502257 | 7.3:+23282251 | MS.gene41729:CDS |
| ACCAGAGTTCTTCTTGCAGT+GGG | 0.504536 | 7.3:+23282195 | MS.gene41729:CDS |
| CCCCACTGCAAGAAGAACTC+TGG | 0.514893 | 7.3:-23282196 | None:intergenic |
| TCAGCAGAGGACACCGGTAA+AGG | 0.516208 | 7.3:+23283050 | MS.gene41729:CDS |
| GGAGAAGAAAAGTAACAAGA+AGG | 0.520874 | 7.3:+23283424 | MS.gene41729:CDS |
| GAGAGAGTAATGTAAAGCTT+AGG | 0.521687 | 7.3:-23283116 | None:intergenic |
| ATTGAAGGCTATGGGGAGTG+TGG | 0.522393 | 7.3:+23283561 | MS.gene41729:CDS |
| GGCACTTGCGATGTTATCAA+TGG | 0.530662 | 7.3:+23283071 | MS.gene41729:CDS |
| TAACAGAAAATCGGCATCAC+CGG | 0.532579 | 7.3:+23282995 | MS.gene41729:CDS |
| ATATCAGTCAACCATGCTCC+AGG | 0.532665 | 7.3:-23283377 | None:intergenic |
| AAAATCGGCATCACCGGAGA+AGG | 0.542456 | 7.3:+23283001 | MS.gene41729:CDS |
| TTGGTATGCAGGAATTCCGA+TGG | 0.546689 | 7.3:+23282945 | MS.gene41729:intron |
| TAGTATCGATCTTCCTTCTC+CGG | 0.549815 | 7.3:-23283014 | None:intergenic |
| ACTATTCTACGACCGGCGGC+CGG | 0.561495 | 7.3:+23282969 | MS.gene41729:CDS |
| AACCAGAGTTCTTCTTGCAG+TGG | 0.563420 | 7.3:+23282194 | MS.gene41729:CDS |
| CGATGGAACTATTCTACGAC+CGG | 0.568292 | 7.3:+23282962 | MS.gene41729:CDS |
| AGTTGGTAAGTCCTGGAGCA+TGG | 0.569217 | 7.3:+23283366 | MS.gene41729:intron |
| TTTCTGTTATCTCCGGCCGC+CGG | 0.574206 | 7.3:-23282981 | None:intergenic |
| GTGTGAGGGTGAAAGATCCT+CGG | 0.605489 | 7.3:+23282239 | MS.gene41729:CDS |
| AAGAAAGCTTAATTCTGGAG+TGG | 0.623077 | 7.3:+23282294 | MS.gene41729:CDS |
| CGGTCGTAGAATAGTTCCAT+CGG | 0.626224 | 7.3:-23282961 | None:intergenic |
| TAGAAATGGAGACAGAAGAG+AGG | 0.628747 | 7.3:+23282146 | None:intergenic |
| AGATCGATACTACACGACGA+GGG | 0.631631 | 7.3:+23283025 | MS.gene41729:CDS |
| GATCGATACTACACGACGAG+GGG | 0.647579 | 7.3:+23283026 | MS.gene41729:CDS |
| CAAGAGGATTGAAGGCTATG+GGG | 0.656812 | 7.3:+23283554 | MS.gene41729:CDS |
| AACAACCTAATCGTCTCACA+AGG | 0.670444 | 7.3:+23282371 | MS.gene41729:CDS |
| ATCGATACTACACGACGAGG+GGG | 0.671513 | 7.3:+23283027 | MS.gene41729:CDS |
| CCAGAGTTCTTCTTGCAGTG+GGG | 0.679245 | 7.3:+23282196 | MS.gene41729:CDS |
| TGGAACTATTCTACGACCGG+CGG | 0.694045 | 7.3:+23282965 | MS.gene41729:CDS |
| AAGATCGATACTACACGACG+AGG | 0.699452 | 7.3:+23283024 | MS.gene41729:CDS |
| TTAAGCCTAGTTGAAATCCG+AGG | 0.705168 | 7.3:-23282256 | None:intergenic |
| GAAGCGTTTGAGATGTGTGA+GGG | 0.718640 | 7.3:+23282225 | MS.gene41729:CDS |
| ATTTCAACTAGGCTTAACGG+TGG | 0.734742 | 7.3:+23282262 | MS.gene41729:CDS |
| GGAAGCGTTTGAGATGTGTG+AGG | 0.737974 | 7.3:+23282224 | MS.gene41729:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAGAGATAAAATAAAAA+AGG | - | chr7.3:23283489-23283508 | None:intergenic | 10.0% |
| !!! | TTTTTATGTTGTTTTTATTA+TGG | + | chr7.3:23283265-23283284 | MS.gene41729:intron | 10.0% |
| !!! | AAAAGAAAAAATGGTTTTTT+TGG | + | chr7.3:23282586-23282605 | MS.gene41729:intron | 15.0% |
| !!! | ATTTTGAGTAAAAGAAAAAA+TGG | + | chr7.3:23282577-23282596 | MS.gene41729:intron | 15.0% |
| !!! | ATTTTTTATGTGATTTTGAT+TGG | + | chr7.3:23282917-23282936 | MS.gene41729:intron | 15.0% |
| !!! | TGTTTTTATTATGGTTAATT+GGG | + | chr7.3:23283274-23283293 | MS.gene41729:intron | 15.0% |
| !!! | TTGTTTTTATTATGGTTAAT+TGG | + | chr7.3:23283273-23283292 | MS.gene41729:intron | 15.0% |
| !! | AATACAAGTTTATATCATCT+GGG | - | chr7.3:23282808-23282827 | None:intergenic | 20.0% |
| !!! | TGAAAAAAAAAACTGGATTT+TGG | + | chr7.3:23282479-23282498 | MS.gene41729:intron | 20.0% |
| ! | GAATACAAGTTTATATCATC+TGG | - | chr7.3:23282809-23282828 | None:intergenic | 25.0% |
| ! | TTATTATGGTTAATTGGGTT+TGG | + | chr7.3:23283279-23283298 | MS.gene41729:intron | 25.0% |
| !! | CTTTTACTCAAAATCAAACA+AGG | - | chr7.3:23282571-23282590 | None:intergenic | 25.0% |
| !!! | AATCCAGTTTTTTTTTTCAG+AGG | - | chr7.3:23282478-23282497 | None:intergenic | 25.0% |
| !!! | ATTTTTTTTCAGAAGGGTAT+TGG | + | chr7.3:23282842-23282861 | MS.gene41729:intron | 25.0% |
| !!! | GTAATGATGTTGTTTTCATT+TGG | + | chr7.3:23282632-23282651 | MS.gene41729:intron | 25.0% |
| !!! | TGATGGATTTTTTTTCAGAA+GGG | + | chr7.3:23282836-23282855 | MS.gene41729:intron | 25.0% |
| !!! | TTGATGGATTTTTTTTCAGA+AGG | + | chr7.3:23282835-23282854 | MS.gene41729:intron | 25.0% |
| !!! | TTTTCATTTGGTTGGTTAAT+GGG | + | chr7.3:23282644-23282663 | MS.gene41729:intron | 25.0% |
| !!! | TTTTGGTTTGTGAAAAATGA+TGG | + | chr7.3:23282496-23282515 | MS.gene41729:intron | 25.0% |
| AAAAGTAACAAGAAGGTAAG+TGG | + | chr7.3:23283431-23283450 | MS.gene41729:intron | 30.0% | |
| AACTTACCAATAAGCTTCTT+TGG | - | chr7.3:23283223-23283242 | None:intergenic | 30.0% | |
| AATCATCCAAAGAAGCTTAT+TGG | + | chr7.3:23283214-23283233 | MS.gene41729:CDS | 30.0% | |
| ACTTGTATTCTGTTCTTTGA+TGG | + | chr7.3:23282819-23282838 | MS.gene41729:intron | 30.0% | |
| AGATGAAGATGAAGATAAAG+AGG | - | chr7.3:23282436-23282455 | None:intergenic | 30.0% | |
| ATCAGAAGAAAGCTTAATTC+TGG | + | chr7.3:23282289-23282308 | MS.gene41729:CDS | 30.0% | |
| GAAGATAAGCATAAAAGAGA+GGG | + | chr7.3:23282680-23282699 | MS.gene41729:intron | 30.0% | |
| TCAAGAGAGATATGAAGTTA+GGG | + | chr7.3:23283403-23283422 | MS.gene41729:CDS | 30.0% | |
| TCATCTTATTCTTCCTTGTT+TGG | + | chr7.3:23282450-23282469 | MS.gene41729:intron | 30.0% | |
| TGAAGATAAGCATAAAAGAG+AGG | + | chr7.3:23282679-23282698 | MS.gene41729:intron | 30.0% | |
| TTGAAAACGACCATAACAAA+TGG | + | chr7.3:23282397-23282416 | MS.gene41729:intron | 30.0% | |
| ! | GTTCCTCTGAAAAAAAAAAC+TGG | + | chr7.3:23282472-23282491 | MS.gene41729:intron | 30.0% |
| ! | TAAGCTTCTTTGGATGATTT+TGG | - | chr7.3:23283213-23283232 | None:intergenic | 30.0% |
| ! | TTTCATTTGGTTGGTTAATG+GGG | + | chr7.3:23282645-23282664 | MS.gene41729:intron | 30.0% |
| !! | GTTTTCATTTGGTTGGTTAA+TGG | + | chr7.3:23282643-23282662 | MS.gene41729:intron | 30.0% |
| !!! | GTGATTTTGATTGGAAGTTT+TGG | + | chr7.3:23282926-23282945 | MS.gene41729:intron | 30.0% |
| !!! | TGATGTTGTTTTCATTTGGT+TGG | + | chr7.3:23282636-23282655 | MS.gene41729:intron | 30.0% |
| ACAAACACCAAACAAACATG+TGG | - | chr7.3:23283342-23283361 | None:intergenic | 35.0% | |
| ATGTTGTCCACATGTTTGTT+TGG | + | chr7.3:23283332-23283351 | MS.gene41729:intron | 35.0% | |
| CCATAACAAATGGATCTTCT+CGG | + | chr7.3:23282407-23282426 | MS.gene41729:intron | 35.0% | |
| GAGAAGAAAAAGCTCTTGTT+TGG | + | chr7.3:23283093-23283112 | MS.gene41729:CDS | 35.0% | |
| GAGAGAGTAATGTAAAGCTT+AGG | - | chr7.3:23283119-23283138 | None:intergenic | 35.0% | |
| GCGTACAAACACTGAAAAAA+TGG | - | chr7.3:23282714-23282733 | None:intergenic | 35.0% | |
| GGAGAAGAAAAGTAACAAGA+AGG | + | chr7.3:23283424-23283443 | MS.gene41729:CDS | 35.0% | |
| GTCAAGAGAGATATGAAGTT+AGG | + | chr7.3:23283402-23283421 | MS.gene41729:CDS | 35.0% | |
| ! | AAGAAAGCTTAATTCTGGAG+TGG | + | chr7.3:23282294-23282313 | MS.gene41729:CDS | 35.0% |
| ! | GAAGATTTTCTTGCCATGAA+AGG | + | chr7.3:23283155-23283174 | MS.gene41729:CDS | 35.0% |
| !! | ATGATTTTGGCCCTCTTTTT+GGG | - | chr7.3:23283200-23283219 | None:intergenic | 35.0% |
| !! | GTTTGGTGTTTGTTTACAGT+TGG | + | chr7.3:23283349-23283368 | MS.gene41729:intron | 35.0% |
| !! | TTTTTCAGAGGAACCAAACA+AGG | - | chr7.3:23282466-23282485 | None:intergenic | 35.0% |
| !!! | TTTTTGGGTTTTTGATGCAG+AGG | + | chr7.3:23283530-23283549 | MS.gene41729:intron | 35.0% |
| AACAACCTAATCGTCTCACA+AGG | + | chr7.3:23282371-23282390 | MS.gene41729:CDS | 40.0% | |
| AACAACCTTGTGAGACGATT+AGG | - | chr7.3:23282379-23282398 | None:intergenic | 40.0% | |
| AAGATCCTCGGATTTCAACT+AGG | + | chr7.3:23282251-23282270 | MS.gene41729:CDS | 40.0% | |
| ACAAGAAGGTAAGTGGTTGT+TGG | + | chr7.3:23283438-23283457 | MS.gene41729:intron | 40.0% | |
| AGGAAGCTTACAACCTTTCA+TGG | - | chr7.3:23283171-23283190 | None:intergenic | 40.0% | |
| ATTTCAACTAGGCTTAACGG+TGG | + | chr7.3:23282262-23282281 | MS.gene41729:CDS | 40.0% | |
| CGGATTTCAACTAGGCTTAA+CGG | + | chr7.3:23282259-23282278 | MS.gene41729:CDS | 40.0% | |
| TAACAGAAAATCGGCATCAC+CGG | + | chr7.3:23282995-23283014 | MS.gene41729:CDS | 40.0% | |
| TCCTCAAAGACCCAAAAAGA+GGG | + | chr7.3:23283187-23283206 | MS.gene41729:CDS | 40.0% | |
| TTAAGCCTAGTTGAAATCCG+AGG | - | chr7.3:23282259-23282278 | None:intergenic | 40.0% | |
| TTCCTCAAAGACCCAAAAAG+AGG | + | chr7.3:23283186-23283205 | MS.gene41729:CDS | 40.0% | |
| ! | CCGAGAAGATCCATTTGTTA+TGG | - | chr7.3:23282410-23282429 | None:intergenic | 40.0% |
| !! | GATGATTTTGGCCCTCTTTT+TGG | - | chr7.3:23283201-23283220 | None:intergenic | 40.0% |
| !! | GATTGGAAGTTTTGGTATGC+AGG | + | chr7.3:23282934-23282953 | MS.gene41729:intron | 40.0% |
| !! | TAGTATCGATCTTCCTTCTC+CGG | - | chr7.3:23283017-23283036 | None:intergenic | 40.0% |
| !! | TGTTTACAGTTGGTAAGTCC+TGG | + | chr7.3:23283359-23283378 | MS.gene41729:intron | 40.0% |
| !!! | TGCCGATTTTCTGTTATCTC+CGG | - | chr7.3:23282991-23283010 | None:intergenic | 40.0% |
| AACATCGCAAGTGCCTTTAC+CGG | - | chr7.3:23283066-23283085 | None:intergenic | 45.0% | |
| AACCAGAGTTCTTCTTGCAG+TGG | + | chr7.3:23282194-23282213 | MS.gene41729:CDS | 45.0% | |
| AAGATCGATACTACACGACG+AGG | + | chr7.3:23283024-23283043 | MS.gene41729:CDS | 45.0% | |
| ACCAGAGTTCTTCTTGCAGT+GGG | + | chr7.3:23282195-23282214 | MS.gene41729:CDS | 45.0% | |
| AGATCGATACTACACGACGA+GGG | + | chr7.3:23283025-23283044 | MS.gene41729:CDS | 45.0% | |
| ATATCAGTCAACCATGCTCC+AGG | - | chr7.3:23283380-23283399 | None:intergenic | 45.0% | |
| CAAGAGGATTGAAGGCTATG+GGG | + | chr7.3:23283554-23283573 | MS.gene41729:CDS | 45.0% | |
| CCAAGAGGATTGAAGGCTAT+GGG | + | chr7.3:23283553-23283572 | MS.gene41729:CDS | 45.0% | |
| CGATGGAACTATTCTACGAC+CGG | + | chr7.3:23282962-23282981 | MS.gene41729:CDS | 45.0% | |
| CGGTCGTAGAATAGTTCCAT+CGG | - | chr7.3:23282964-23282983 | None:intergenic | 45.0% | |
| CTGTTGCCTTACATGCTCTT+TGG | - | chr7.3:23282174-23282193 | None:intergenic | 45.0% | |
| GGCACTTGCGATGTTATCAA+TGG | + | chr7.3:23283071-23283090 | MS.gene41729:CDS | 45.0% | |
| GGCCGGAGATAACAGAAAAT+CGG | + | chr7.3:23282986-23283005 | MS.gene41729:CDS | 45.0% | |
| TTGGTATGCAGGAATTCCGA+TGG | + | chr7.3:23282945-23282964 | MS.gene41729:intron | 45.0% | |
| ! | GAAGCGTTTGAGATGTGTGA+GGG | + | chr7.3:23282225-23282244 | MS.gene41729:CDS | 45.0% |
| ! | GAGGAACCAAAGAGCATGTA+AGG | + | chr7.3:23282165-23282184 | MS.gene41729:CDS | 45.0% |
| ! | TTTTTGATGCAGAGGCCAAG+AGG | + | chr7.3:23283538-23283557 | MS.gene41729:intron | 45.0% |
| !!! | TTTTTCTAAATATAATTTTT+GGG | + | chr7.3:23283515-23283534 | MS.gene41729:intron | 5.0% |
| !!! | TTTTTTCTAAATATAATTTT+TGG | + | chr7.3:23283514-23283533 | MS.gene41729:intron | 5.0% |
| AAAATCGGCATCACCGGAGA+AGG | + | chr7.3:23283001-23283020 | MS.gene41729:CDS | 50.0% | |
| ATCGATACTACACGACGAGG+GGG | + | chr7.3:23283027-23283046 | MS.gene41729:CDS | 50.0% | |
| ATTGAAGGCTATGGGGAGTG+TGG | + | chr7.3:23283561-23283580 | MS.gene41729:CDS | 50.0% | |
| CCAGAGTTCTTCTTGCAGTG+GGG | + | chr7.3:23282196-23282215 | MS.gene41729:CDS | 50.0% | |
| CCCATAGCCTTCAATCCTCT+TGG | - | chr7.3:23283556-23283575 | None:intergenic | 50.0% | |
| GATCGATACTACACGACGAG+GGG | + | chr7.3:23283026-23283045 | MS.gene41729:CDS | 50.0% | |
| GCCAAGAGGATTGAAGGCTA+TGG | + | chr7.3:23283552-23283571 | MS.gene41729:CDS | 50.0% | |
| GGAGTGGAGAATCATCGTTC+TGG | + | chr7.3:23282310-23282329 | MS.gene41729:CDS | 50.0% | |
| GTGTGAGGGTGAAAGATCCT+CGG | + | chr7.3:23282239-23282258 | MS.gene41729:CDS | 50.0% | |
| TCTTCTTGCAGTGGGGAAAC+AGG | + | chr7.3:23282203-23282222 | MS.gene41729:CDS | 50.0% | |
| TGGAACTATTCTACGACCGG+CGG | + | chr7.3:23282965-23282984 | MS.gene41729:CDS | 50.0% | |
| !! | AGTTGGTAAGTCCTGGAGCA+TGG | + | chr7.3:23283366-23283385 | MS.gene41729:intron | 50.0% |
| !! | GGAAGCGTTTGAGATGTGTG+AGG | + | chr7.3:23282224-23282243 | MS.gene41729:CDS | 50.0% |
| !!! | GCCCTCTTTTTGGGTCTTTG+AGG | - | chr7.3:23283191-23283210 | None:intergenic | 50.0% |
| CCCCACTGCAAGAAGAACTC+TGG | - | chr7.3:23282199-23282218 | None:intergenic | 55.0% | |
| GCAGAGGCCAAGAGGATTGA+AGG | + | chr7.3:23283546-23283565 | MS.gene41729:intron | 55.0% | |
| TCAGCAGAGGACACCGGTAA+AGG | + | chr7.3:23283050-23283069 | MS.gene41729:CDS | 55.0% | |
| TTTCTGTTATCTCCGGCCGC+CGG | - | chr7.3:23282984-23283003 | None:intergenic | 55.0% | |
| ACTATTCTACGACCGGCGGC+CGG | + | chr7.3:23282969-23282988 | MS.gene41729:CDS | 60.0% | |
| AGGGGGTCAGCAGAGGACAC+CGG | + | chr7.3:23283044-23283063 | MS.gene41729:CDS | 65.0% | |
| CACGACGAGGGGGTCAGCAG+AGG | + | chr7.3:23283037-23283056 | MS.gene41729:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 23282151 | 23283600 | 23282151 | ID=MS.gene41729 |
| chr7.3 | mRNA | 23282151 | 23283600 | 23282151 | ID=MS.gene41729.t1;Parent=MS.gene41729 |
| chr7.3 | exon | 23282151 | 23282392 | 23282151 | ID=MS.gene41729.t1.exon1;Parent=MS.gene41729.t1 |
| chr7.3 | CDS | 23282151 | 23282392 | 23282151 | ID=cds.MS.gene41729.t1;Parent=MS.gene41729.t1 |
| chr7.3 | exon | 23282956 | 23283235 | 23282956 | ID=MS.gene41729.t1.exon2;Parent=MS.gene41729.t1 |
| chr7.3 | CDS | 23282956 | 23283235 | 23282956 | ID=cds.MS.gene41729.t1;Parent=MS.gene41729.t1 |
| chr7.3 | exon | 23283368 | 23283445 | 23283368 | ID=MS.gene41729.t1.exon3;Parent=MS.gene41729.t1 |
| chr7.3 | CDS | 23283368 | 23283445 | 23283368 | ID=cds.MS.gene41729.t1;Parent=MS.gene41729.t1 |
| chr7.3 | exon | 23283550 | 23283600 | 23283550 | ID=MS.gene41729.t1.exon4;Parent=MS.gene41729.t1 |
| chr7.3 | CDS | 23283550 | 23283600 | 23283550 | ID=cds.MS.gene41729.t1;Parent=MS.gene41729.t1 |
| Gene Sequence |
| Protein sequence |
