Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45434.t1 | RHN38812.1 | 89.9 | 534 | 54 | 0 | 1 | 534 | 1 | 534 | 7.10E-150 | 540.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45434.t1 | O80792 | 45.3 | 106 | 45 | 2 | 51 | 149 | 76 | 175 | 1.8e-16 | 89.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45434.t1 | A0A396GAR2 | 89.9 | 534 | 54 | 0 | 1 | 534 | 1 | 534 | 5.1e-150 | 540.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene45434 | 0.834348 | 3.16E-56 | -1.69E-46 |
| MS.gene049153 | MS.gene45434 | 0.836879 | 7.23E-57 | -1.69E-46 |
| MS.gene049233 | MS.gene45434 | 0.819448 | 1.16E-52 | -1.69E-46 |
| MS.gene049260 | MS.gene45434 | 0.815882 | 7.36E-52 | -1.69E-46 |
| MS.gene049297 | MS.gene45434 | 0.834572 | 2.77E-56 | -1.69E-46 |
| MS.gene04933 | MS.gene45434 | 0.829523 | 4.91E-55 | -1.69E-46 |
| MS.gene049351 | MS.gene45434 | 0.801004 | 1.10E-48 | -1.69E-46 |
| MS.gene049378 | MS.gene45434 | 0.809152 | 2.18E-50 | -1.69E-46 |
| MS.gene049758 | MS.gene45434 | 0.835989 | 1.22E-56 | -1.69E-46 |
| MS.gene049910 | MS.gene45434 | 0.816043 | 6.78E-52 | -1.69E-46 |
| MS.gene050226 | MS.gene45434 | 0.857313 | 1.78E-62 | -1.69E-46 |
| MS.gene050227 | MS.gene45434 | 0.846928 | 1.60E-59 | -1.69E-46 |
| MS.gene050228 | MS.gene45434 | 0.846479 | 2.12E-59 | -1.69E-46 |
| MS.gene050301 | MS.gene45434 | 0.892912 | 1.02E-74 | -1.69E-46 |
| MS.gene050330 | MS.gene45434 | -0.823388 | 1.42E-53 | -1.69E-46 |
| MS.gene050558 | MS.gene45434 | 0.849423 | 3.27E-60 | -1.69E-46 |
| MS.gene050642 | MS.gene45434 | 0.817219 | 3.69E-52 | -1.69E-46 |
| MS.gene050650 | MS.gene45434 | 0.820297 | 7.39E-53 | -1.69E-46 |
| MS.gene050670 | MS.gene45434 | 0.804965 | 1.68E-49 | -1.69E-46 |
| MS.gene050787 | MS.gene45434 | 0.805712 | 1.17E-49 | -1.69E-46 |
| MS.gene05101 | MS.gene45434 | 0.802051 | 6.74E-49 | -1.69E-46 |
| MS.gene051360 | MS.gene45434 | 0.822325 | 2.52E-53 | -1.69E-46 |
| MS.gene051525 | MS.gene45434 | 0.816992 | 4.15E-52 | -1.69E-46 |
| MS.gene051582 | MS.gene45434 | 0.822793 | 1.96E-53 | -1.69E-46 |
| MS.gene051663 | MS.gene45434 | 0.837169 | 6.09E-57 | -1.69E-46 |
| MS.gene051860 | MS.gene45434 | 0.855773 | 5.04E-62 | -1.69E-46 |
| MS.gene051983 | MS.gene45434 | 0.844347 | 8.00E-59 | -1.69E-46 |
| MS.gene052011 | MS.gene45434 | -0.828975 | 6.67E-55 | -1.69E-46 |
| MS.gene052077 | MS.gene45434 | 0.814277 | 1.67E-51 | -1.69E-46 |
| MS.gene052176 | MS.gene45434 | 0.809476 | 1.86E-50 | -1.69E-46 |
| MS.gene052188 | MS.gene45434 | 0.869927 | 2.15E-66 | -1.69E-46 |
| MS.gene052207 | MS.gene45434 | 0.832264 | 1.04E-55 | -1.69E-46 |
| MS.gene052253 | MS.gene45434 | 0.818052 | 2.40E-52 | -1.69E-46 |
| MS.gene052340 | MS.gene45434 | 0.833979 | 3.91E-56 | -1.69E-46 |
| MS.gene053559 | MS.gene45434 | 0.806779 | 6.97E-50 | -1.69E-46 |
| MS.gene053577 | MS.gene45434 | 0.818747 | 1.67E-52 | -1.69E-46 |
| MS.gene053836 | MS.gene45434 | 0.8886 | 5.11E-73 | -1.69E-46 |
| MS.gene053928 | MS.gene45434 | 0.840948 | 6.39E-58 | -1.69E-46 |
| MS.gene054123 | MS.gene45434 | 0.847021 | 1.50E-59 | -1.69E-46 |
| MS.gene054183 | MS.gene45434 | 0.814599 | 1.42E-51 | -1.69E-46 |
| MS.gene054349 | MS.gene45434 | 0.806149 | 9.46E-50 | -1.69E-46 |
| MS.gene054473 | MS.gene45434 | 0.842168 | 3.05E-58 | -1.69E-46 |
| MS.gene054556 | MS.gene45434 | 0.816744 | 4.72E-52 | -1.69E-46 |
| MS.gene05455 | MS.gene45434 | 0.804727 | 1.88E-49 | -1.69E-46 |
| MS.gene054719 | MS.gene45434 | 0.810179 | 1.31E-50 | -1.69E-46 |
| MS.gene054930 | MS.gene45434 | 0.875203 | 3.71E-68 | -1.69E-46 |
| MS.gene054942 | MS.gene45434 | 0.847418 | 1.17E-59 | -1.69E-46 |
| MS.gene054983 | MS.gene45434 | 0.816129 | 6.48E-52 | -1.69E-46 |
| MS.gene055358 | MS.gene45434 | 0.809843 | 1.55E-50 | -1.69E-46 |
| MS.gene055390 | MS.gene45434 | 0.828694 | 7.80E-55 | -1.69E-46 |
| MS.gene055422 | MS.gene45434 | 0.83709 | 6.38E-57 | -1.69E-46 |
| MS.gene055428 | MS.gene45434 | 0.838238 | 3.24E-57 | -1.69E-46 |
| MS.gene05553 | MS.gene45434 | 0.852847 | 3.53E-61 | -1.69E-46 |
| MS.gene055604 | MS.gene45434 | 0.835369 | 1.75E-56 | -1.69E-46 |
| MS.gene055712 | MS.gene45434 | 0.816912 | 4.33E-52 | -1.69E-46 |
| MS.gene055859 | MS.gene45434 | 0.80206 | 6.71E-49 | -1.69E-46 |
| MS.gene056407 | MS.gene45434 | 0.83223 | 1.06E-55 | -1.69E-46 |
| MS.gene056612 | MS.gene45434 | 0.812608 | 3.89E-51 | -1.69E-46 |
| MS.gene056659 | MS.gene45434 | 0.824374 | 8.36E-54 | -1.69E-46 |
| MS.gene056723 | MS.gene45434 | 0.820746 | 5.83E-53 | -1.69E-46 |
| MS.gene056875 | MS.gene45434 | 0.828087 | 1.09E-54 | -1.69E-46 |
| MS.gene056902 | MS.gene45434 | 0.813336 | 2.70E-51 | -1.69E-46 |
| MS.gene056979 | MS.gene45434 | 0.838665 | 2.51E-57 | -1.69E-46 |
| MS.gene05702 | MS.gene45434 | 0.803524 | 3.35E-49 | -1.69E-46 |
| MS.gene057121 | MS.gene45434 | 0.865532 | 5.52E-65 | -1.69E-46 |
| MS.gene057245 | MS.gene45434 | 0.804341 | 2.26E-49 | -1.69E-46 |
| MS.gene057448 | MS.gene45434 | 0.820027 | 8.52E-53 | -1.69E-46 |
| MS.gene057449 | MS.gene45434 | 0.801753 | 7.76E-49 | -1.69E-46 |
| MS.gene057450 | MS.gene45434 | 0.820301 | 7.37E-53 | -1.69E-46 |
| MS.gene057469 | MS.gene45434 | 0.892255 | 1.88E-74 | -1.69E-46 |
| MS.gene057749 | MS.gene45434 | 0.821033 | 5.01E-53 | -1.69E-46 |
| MS.gene057823 | MS.gene45434 | 0.812921 | 3.32E-51 | -1.69E-46 |
| MS.gene058002 | MS.gene45434 | 0.882785 | 7.79E-71 | -1.69E-46 |
| MS.gene05811 | MS.gene45434 | 0.875596 | 2.72E-68 | -1.69E-46 |
| MS.gene058142 | MS.gene45434 | 0.880189 | 6.74E-70 | -1.69E-46 |
| MS.gene058276 | MS.gene45434 | 0.809704 | 1.66E-50 | -1.69E-46 |
| MS.gene058365 | MS.gene45434 | 0.813451 | 2.54E-51 | -1.69E-46 |
| MS.gene05842 | MS.gene45434 | 0.801698 | 7.96E-49 | -1.69E-46 |
| MS.gene058660 | MS.gene45434 | 0.802749 | 4.84E-49 | -1.69E-46 |
| MS.gene058710 | MS.gene45434 | 0.813885 | 2.04E-51 | -1.69E-46 |
| MS.gene058749 | MS.gene45434 | 0.813973 | 1.95E-51 | -1.69E-46 |
| MS.gene058833 | MS.gene45434 | 0.83239 | 9.71E-56 | -1.69E-46 |
| MS.gene05886 | MS.gene45434 | 0.869566 | 2.81E-66 | -1.69E-46 |
| MS.gene058949 | MS.gene45434 | 0.858081 | 1.05E-62 | -1.69E-46 |
| MS.gene05907 | MS.gene45434 | 0.87076 | 1.14E-66 | -1.69E-46 |
| MS.gene059128 | MS.gene45434 | 0.806054 | 9.91E-50 | -1.69E-46 |
| MS.gene059247 | MS.gene45434 | 0.800501 | 1.40E-48 | -1.69E-46 |
| MS.gene059285 | MS.gene45434 | 0.813529 | 2.44E-51 | -1.69E-46 |
| MS.gene059420 | MS.gene45434 | 0.816684 | 4.87E-52 | -1.69E-46 |
| MS.gene059518 | MS.gene45434 | 0.820647 | 6.14E-53 | -1.69E-46 |
| MS.gene059597 | MS.gene45434 | 0.85926 | 4.68E-63 | -1.69E-46 |
| MS.gene05959 | MS.gene45434 | 0.803623 | 3.19E-49 | -1.69E-46 |
| MS.gene059676 | MS.gene45434 | 0.839372 | 1.65E-57 | -1.69E-46 |
| MS.gene059688 | MS.gene45434 | 0.802529 | 5.37E-49 | -1.69E-46 |
| MS.gene059692 | MS.gene45434 | 0.812439 | 4.24E-51 | -1.69E-46 |
| MS.gene059695 | MS.gene45434 | 0.813019 | 3.16E-51 | -1.69E-46 |
| MS.gene05984 | MS.gene45434 | 0.852922 | 3.36E-61 | -1.69E-46 |
| MS.gene059894 | MS.gene45434 | 0.818184 | 2.24E-52 | -1.69E-46 |
| MS.gene059899 | MS.gene45434 | 0.840409 | 8.85E-58 | -1.69E-46 |
| MS.gene060407 | MS.gene45434 | 0.826679 | 2.38E-54 | -1.69E-46 |
| MS.gene060495 | MS.gene45434 | 0.806646 | 7.43E-50 | -1.69E-46 |
| MS.gene061049 | MS.gene45434 | 0.834719 | 2.55E-56 | -1.69E-46 |
| MS.gene061159 | MS.gene45434 | 0.805352 | 1.39E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45434.t1 | MTR_0874s0010 | 93.506 | 154 | 10 | 0 | 381 | 534 | 1 | 154 | 1.28e-94 | 285 |
| MS.gene45434.t1 | MTR_8g097000 | 44.118 | 102 | 53 | 1 | 51 | 152 | 31 | 128 | 5.97e-19 | 90.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45434.t1 | AT2G37920 | 80.282 | 142 | 28 | 0 | 43 | 184 | 42 | 183 | 2.70e-81 | 254 |
| MS.gene45434.t1 | AT2G07750 | 47.170 | 106 | 43 | 3 | 51 | 149 | 76 | 175 | 1.96e-19 | 92.8 |
| MS.gene45434.t1 | AT1G63250 | 47.000 | 100 | 52 | 1 | 51 | 149 | 26 | 125 | 1.06e-18 | 90.5 |
Find 182 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTTCTCCTTTGAATTA+TGG | 0.136407 | 8.4:+78321804 | MS.gene45434:CDS |
| TAAGAGTTGCTTGGCCTTCT+TGG | 0.154488 | 8.4:-78321391 | None:intergenic |
| ATTATTCTTCTTTGAATTCT+AGG | 0.168750 | 8.4:+78322267 | MS.gene45434:CDS |
| GAAGGCCAAGCAACTCTTAA+AGG | 0.203226 | 8.4:+78321395 | MS.gene45434:CDS |
| CTTCTTCTCCTTTGAATTAT+GGG | 0.214225 | 8.4:+78321805 | MS.gene45434:CDS |
| TTTATGTCAAAGGGTGTTAA+TGG | 0.247197 | 8.4:+78322539 | MS.gene45434:CDS |
| AGCCTGGTGGGTTTGACCTT+TGG | 0.261376 | 8.4:+78321583 | MS.gene45434:CDS |
| TGATGAGCAGCTCAAGGTTT+TGG | 0.278740 | 8.4:+78321545 | MS.gene45434:CDS |
| TTTATTCCAAAGGGTGTAGA+TGG | 0.302620 | 8.4:+78322344 | MS.gene45434:CDS |
| ATACTATGAACAACCCCTTT+AGG | 0.307915 | 8.4:-78321669 | None:intergenic |
| AGATTCCGAAGTTTATGATA+TGG | 0.326680 | 8.4:+78322694 | MS.gene45434:CDS |
| GATGGCAATTTCGGGAATAA+AGG | 0.329120 | 8.4:+78322422 | MS.gene45434:CDS |
| CTCTGAGTTGGAGAGGCCTT+GGG | 0.338210 | 8.4:+78321482 | MS.gene45434:CDS |
| TGGAACTGATCGACATCTTC+TGG | 0.338243 | 8.4:-78322122 | None:intergenic |
| ATGGGAGTAGGTATTCATTA+GGG | 0.344079 | 8.4:+78322216 | MS.gene45434:CDS |
| TCTCTGAGTTGGAGAGGCCT+TGG | 0.346324 | 8.4:+78321481 | MS.gene45434:CDS |
| AAGGGTGTTAATGGGTCTAA+TGG | 0.352119 | 8.4:+78322548 | MS.gene45434:CDS |
| GAATAATGATCTTCATTATC+TGG | 0.357045 | 8.4:-78322251 | None:intergenic |
| CTGCTAGGTACTTTCCTAAA+GGG | 0.358672 | 8.4:+78321655 | MS.gene45434:CDS |
| CGTTCTTCTCATTTGAGTAC+TGG | 0.365356 | 8.4:+78322038 | MS.gene45434:CDS |
| AATGGGAGTAGGTATTCATT+AGG | 0.365746 | 8.4:+78322215 | MS.gene45434:CDS |
| TCCATTGCAGGCAGGAGATA+TGG | 0.367211 | 8.4:+78322620 | MS.gene45434:CDS |
| CTAGCAGAAGGCAACTCATC+AGG | 0.379311 | 8.4:-78321639 | None:intergenic |
| TCACTAGTAACCTTCATATA+AGG | 0.389583 | 8.4:-78321696 | None:intergenic |
| GAGGAAGAGGGCTGAGCTTA+AGG | 0.397779 | 8.4:+78321452 | MS.gene45434:CDS |
| AGAGGGAGTAATTCCATTGC+AGG | 0.400461 | 8.4:+78322608 | MS.gene45434:CDS |
| GATTCCGAAGTTTATGATAT+GGG | 0.401573 | 8.4:+78322695 | MS.gene45434:CDS |
| GATGTTGTTCGGTCCCTTGA+TGG | 0.402228 | 8.4:+78322011 | MS.gene45434:CDS |
| CCAACGATGGTGATGCTGTT+AGG | 0.403084 | 8.4:+78322465 | MS.gene45434:CDS |
| ATGGCAATTTCGGGAATAAA+GGG | 0.411540 | 8.4:+78322423 | MS.gene45434:CDS |
| GCTTTGATAGAGAACAACTT+AGG | 0.416712 | 8.4:-78321522 | None:intergenic |
| GTTCTTCTCATTTGAGTACT+AGG | 0.424850 | 8.4:+78322156 | MS.gene45434:CDS |
| TTGGAAGATGGTGGCGGTGA+AGG | 0.425938 | 8.4:+78321744 | MS.gene45434:CDS |
| TGCCACTTGGACACCCCACC+TGG | 0.430845 | 8.4:-78321351 | None:intergenic |
| CTTAAAGGCGCGACTGTGCC+GGG | 0.433268 | 8.4:+78321410 | MS.gene45434:CDS |
| GGCAGTCGATTGCAAAAGAA+TGG | 0.437012 | 8.4:+78321846 | MS.gene45434:CDS |
| GCTGATAGGTTTCAGAAGCC+TGG | 0.437802 | 8.4:+78321567 | MS.gene45434:CDS |
| TGATGACTTGTTGGTGGAAC+CGG | 0.438809 | 8.4:+78321716 | MS.gene45434:CDS |
| TTATGTCAAAGGGTGTTAAT+GGG | 0.439277 | 8.4:+78322540 | MS.gene45434:CDS |
| GTTGGTGGAACCGGATGTTT+TGG | 0.441447 | 8.4:+78321725 | MS.gene45434:CDS |
| ACCCCACCTGGATACGTCCT+TGG | 0.442899 | 8.4:-78321339 | None:intergenic |
| GTTGGAGAGGCCTTGGGAGG+TGG | 0.450649 | 8.4:+78321488 | MS.gene45434:CDS |
| TCCTTGGCCCACCACCCATT+CGG | 0.453379 | 8.4:-78321323 | None:intergenic |
| TCCGACCCATCTACACCCTT+TGG | 0.454564 | 8.4:-78322350 | None:intergenic |
| CTTTGATAGAGAACAACTTA+GGG | 0.454597 | 8.4:-78321521 | None:intergenic |
| AGGGTGTTAATGGGTCTAAT+GGG | 0.454713 | 8.4:+78322549 | MS.gene45434:CDS |
| TCTTAAAGGCGCGACTGTGC+CGG | 0.457990 | 8.4:+78321409 | MS.gene45434:CDS |
| ATGGTGGCGGTGAAGGGTAT+TGG | 0.462116 | 8.4:+78321751 | MS.gene45434:CDS |
| TCTGCTAGGTACTTTCCTAA+AGG | 0.464717 | 8.4:+78321654 | MS.gene45434:CDS |
| GGTGGGCCAAGGACGTATCC+AGG | 0.467611 | 8.4:+78321333 | MS.gene45434:CDS |
| GCTGTTAGGTCTAATGAATC+TGG | 0.468651 | 8.4:+78322479 | MS.gene45434:CDS |
| TCTTTGAATTCTAGGAGGAA+TGG | 0.471020 | 8.4:+78322275 | MS.gene45434:CDS |
| TTTCATATATTTGCCGCTCC+CGG | 0.471772 | 8.4:-78321428 | None:intergenic |
| AGGAGTGAATTGAATGTTCC+TGG | 0.477841 | 8.4:+78321945 | MS.gene45434:CDS |
| TCTCCTTCACATGCGAGGAA+TGG | 0.479275 | 8.4:+78322389 | MS.gene45434:CDS |
| CGTTCAACTGTGATCCGAAT+GGG | 0.479445 | 8.4:+78321309 | MS.gene45434:CDS |
| TTCTCCTTTGAATTATGGGA+GGG | 0.482281 | 8.4:+78321809 | MS.gene45434:CDS |
| GGAAGGAAGTTTATTCCAAA+GGG | 0.482831 | 8.4:+78322335 | MS.gene45434:CDS |
| TATGCAGGAAGAGATGCTTC+TGG | 0.484105 | 8.4:+78322575 | MS.gene45434:CDS |
| TCCGAATGGGTGGTGGGCCA+AGG | 0.486021 | 8.4:+78321322 | MS.gene45434:CDS |
| TCGCGCCTTTAAGAGTTGCT+TGG | 0.492554 | 8.4:-78321400 | None:intergenic |
| CATACGCTTCCATTGCCACT+TGG | 0.496238 | 8.4:-78321364 | None:intergenic |
| GGCTTCTCAACCACCTCCCA+AGG | 0.496571 | 8.4:-78321498 | None:intergenic |
| CGTGGTGGATTGAGAAAGAA+TGG | 0.497408 | 8.4:+78322197 | MS.gene45434:CDS |
| GTTCTTCTCATTTGAGTACT+GGG | 0.500842 | 8.4:+78322039 | MS.gene45434:CDS |
| AGGCGCGACTGTGCCGGGAG+CGG | 0.501425 | 8.4:+78321415 | MS.gene45434:CDS |
| GACCTTTGGACTGAAAATGA+TGG | 0.501676 | 8.4:+78321597 | MS.gene45434:CDS |
| TGGAAAGAGGTTTATGTCAA+AGG | 0.502932 | 8.4:+78322529 | MS.gene45434:CDS |
| TGGAAGATGGTGGCGGTGAA+GGG | 0.503158 | 8.4:+78321745 | MS.gene45434:CDS |
| TAGCAGAAGGCAACTCATCA+GGG | 0.507988 | 8.4:-78321638 | None:intergenic |
| TAGTATCAAGCCTTATATGA+AGG | 0.508811 | 8.4:+78321686 | MS.gene45434:CDS |
| CTTCTCCTTTGAATTATGGG+AGG | 0.510533 | 8.4:+78321808 | MS.gene45434:CDS |
| AACAATGCTTCACGAAGGGT+TGG | 0.510689 | 8.4:+78322665 | MS.gene45434:CDS |
| GGCCAAGGACGTATCCAGGT+GGG | 0.513034 | 8.4:+78321337 | MS.gene45434:CDS |
| GGTTACTAGTGATGACTTGT+TGG | 0.513129 | 8.4:+78321707 | MS.gene45434:CDS |
| GATATGGGTTTACAACAAGA+TGG | 0.513338 | 8.4:+78322710 | MS.gene45434:CDS |
| GAGAAGAACGCTCCCCATCA+TGG | 0.513359 | 8.4:-78321908 | None:intergenic |
| GGATTCAGAAAGAATGAAAG+TGG | 0.514070 | 8.4:+78322086 | MS.gene45434:CDS |
| GAGAAGAACGCTCCCCATCA+TGG | 0.514183 | 8.4:-78322142 | None:intergenic |
| TCGTTCAACTGTGATCCGAA+TGG | 0.514392 | 8.4:+78321308 | MS.gene45434:CDS |
| GGGTCTAATGGGATGTATGC+AGG | 0.514728 | 8.4:+78322560 | MS.gene45434:CDS |
| TCCATATCTCCTGCCTGCAA+TGG | 0.515308 | 8.4:-78322621 | None:intergenic |
| GTGGCAATGGAAGCGTATGC+AGG | 0.517535 | 8.4:+78321368 | MS.gene45434:CDS |
| TGCTAGGTACTTTCCTAAAG+GGG | 0.520755 | 8.4:+78321656 | MS.gene45434:CDS |
| AGAATGAGGAAGCACGGGAA+TGG | 0.520786 | 8.4:+78322314 | MS.gene45434:CDS |
| TAAGGCTGCTGTCTCTGAGT+TGG | 0.521057 | 8.4:+78321470 | MS.gene45434:CDS |
| ATTCATTAGGGGATGTTGAT+CGG | 0.523054 | 8.4:+78322228 | MS.gene45434:CDS |
| GTGGGGTGTCCAAGTGGCAA+TGG | 0.524560 | 8.4:+78321355 | MS.gene45434:CDS |
| ATGTTGATCGGTCCCATGAT+GGG | 0.525367 | 8.4:+78321895 | MS.gene45434:CDS |
| ATTTGTCAGAGGATGTTGTT+CGG | 0.528186 | 8.4:+78322000 | MS.gene45434:CDS |
| CTGATGAGTTGCCTTCTGCT+AGG | 0.530521 | 8.4:+78321640 | MS.gene45434:CDS |
| ATGTCGATCAGTTCCATGAT+GGG | 0.532019 | 8.4:+78322129 | MS.gene45434:CDS |
| GGAAAGAGGTTTATGTCAAA+GGG | 0.535087 | 8.4:+78322530 | MS.gene45434:CDS |
| AATGTTGATCGGTCCCATGA+TGG | 0.535818 | 8.4:+78321894 | MS.gene45434:CDS |
| GCAGTCGATTGCAAAAGAAT+GGG | 0.537992 | 8.4:+78321847 | MS.gene45434:CDS |
| AGAAGAACGCTCCCCATCAT+GGG | 0.538589 | 8.4:-78321907 | None:intergenic |
| GAGAAGAACGCTCTCCATCA+AGG | 0.539033 | 8.4:-78322025 | None:intergenic |
| CCACCATCTTCCAAAACATC+CGG | 0.541453 | 8.4:-78321735 | None:intergenic |
| GATGTCGATCAGTTCCATGA+TGG | 0.542056 | 8.4:+78322128 | MS.gene45434:CDS |
| GATAGGTTTCAGAAGCCTGG+TGG | 0.543185 | 8.4:+78321570 | MS.gene45434:CDS |
| TGAGGAAGCACGGGAATGGA+AGG | 0.547129 | 8.4:+78322318 | MS.gene45434:CDS |
| CGATTGCAAAAGAATGGGAA+TGG | 0.549214 | 8.4:+78321852 | MS.gene45434:CDS |
| ATAGGTTTCAGAAGCCTGGT+GGG | 0.552605 | 8.4:+78321571 | MS.gene45434:CDS |
| GGGAGGGATGAAGTGAATGT+TGG | 0.555148 | 8.4:+78321825 | MS.gene45434:CDS |
| GGAGTAATTCCATTGCAGGC+AGG | 0.555506 | 8.4:+78322612 | MS.gene45434:CDS |
| GCCAAGGACGTATCCAGGTG+GGG | 0.557287 | 8.4:+78321338 | MS.gene45434:CDS |
| ACTGTGATCCGAATGGGTGG+TGG | 0.557980 | 8.4:+78321315 | MS.gene45434:CDS |
| CTGCTGTCTCTGAGTTGGAG+AGG | 0.559462 | 8.4:+78321475 | MS.gene45434:CDS |
| TGGAAGGAAGTTTATTCCAA+AGG | 0.560885 | 8.4:+78322334 | MS.gene45434:CDS |
| TGCAAAAGAATGGGAATGGA+AGG | 0.563734 | 8.4:+78321856 | MS.gene45434:CDS |
| GGAGGAAGGACAGTGGAAAG+AGG | 0.564139 | 8.4:+78322516 | MS.gene45434:CDS |
| AAATATATGAAATGAGGAAG+AGG | 0.565243 | 8.4:+78321439 | MS.gene45434:CDS |
| GTCCAAAGGTCAAACCCACC+AGG | 0.565839 | 8.4:-78321585 | None:intergenic |
| CTTCTCATTTGAGTGCTGAG+AGG | 0.569280 | 8.4:+78321925 | MS.gene45434:CDS |
| ATGCTAGAATGAGGAAGCAC+GGG | 0.570036 | 8.4:+78322309 | MS.gene45434:CDS |
| GCTCCATTCCTCGCATGTGA+AGG | 0.570651 | 8.4:-78322392 | None:intergenic |
| TAAACCCATATCATAAACTT+CGG | 0.571619 | 8.4:-78322699 | None:intergenic |
| TCCAAAGGGTGTAGATGGGT+CGG | 0.572590 | 8.4:+78322349 | MS.gene45434:CDS |
| GATTGAGAAAGAATGGGAGT+AGG | 0.578988 | 8.4:+78322204 | MS.gene45434:CDS |
| GAATAAAGGGAGTGCAAGGA+GGG | 0.580424 | 8.4:+78322436 | MS.gene45434:CDS |
| GGGCCAAGGACGTATCCAGG+TGG | 0.582577 | 8.4:+78321336 | MS.gene45434:CDS |
| CAAATATTGATGCTAGAATG+AGG | 0.585058 | 8.4:+78322300 | MS.gene45434:CDS |
| TTATTCCAAAGGGTGTAGAT+GGG | 0.587028 | 8.4:+78322345 | MS.gene45434:CDS |
| TGATATTAGATCGAGGAGGA+AGG | 0.587125 | 8.4:+78322502 | MS.gene45434:CDS |
| CAAAGCTGATGAGCAGCTCA+AGG | 0.588229 | 8.4:+78321539 | MS.gene45434:CDS |
| GTTCTTCTCCTTCACATGCG+AGG | 0.590332 | 8.4:+78322384 | MS.gene45434:CDS |
| GAAGCGTATGCAGGCCAAGA+AGG | 0.590653 | 8.4:+78321377 | MS.gene45434:CDS |
| GATGTTGATGATTGTGAGGG+TGG | 0.591087 | 8.4:+78321780 | MS.gene45434:CDS |
| ATTCTTCTTTGAATTCTAGG+AGG | 0.595094 | 8.4:+78322270 | MS.gene45434:CDS |
| TGAGTTGGAGAGGCCTTGGG+AGG | 0.596213 | 8.4:+78321485 | MS.gene45434:CDS |
| CAGTGGTTGTACCACATTGG+CGG | 0.597154 | 8.4:-78321190 | None:intergenic |
| GATGCTAGAATGAGGAAGCA+CGG | 0.598567 | 8.4:+78322308 | MS.gene45434:CDS |
| TACTAGTGATGACTTGTTGG+TGG | 0.599018 | 8.4:+78321710 | MS.gene45434:CDS |
| CCTAACAGCATCACCATCGT+TGG | 0.599436 | 8.4:-78322465 | None:intergenic |
| TCATCCCTCCCATAATTCAA+AGG | 0.599683 | 8.4:-78321813 | None:intergenic |
| AAAAGAACGGGAATGGAAGG+AGG | 0.599763 | 8.4:+78321976 | MS.gene45434:CDS |
| TTCAAACAATGCTTCACGAA+GGG | 0.600600 | 8.4:+78322661 | MS.gene45434:CDS |
| AGAAGAACGCTCTCCATCAA+GGG | 0.602854 | 8.4:-78322024 | None:intergenic |
| AAGACCGAGTTGAATGTTCG+TGG | 0.604006 | 8.4:+78322179 | MS.gene45434:CDS |
| TGGAAGGAGGTATTTGTCAG+AGG | 0.606269 | 8.4:+78321989 | MS.gene45434:CDS |
| CGGTGAAGGGTATTGGTCAG+AGG | 0.608666 | 8.4:+78321758 | MS.gene45434:CDS |
| TCAGAAAGAATGAAAGTGGG+AGG | 0.610800 | 8.4:+78322090 | MS.gene45434:CDS |
| AATATATGAAATGAGGAAGA+GGG | 0.611111 | 8.4:+78321440 | MS.gene45434:CDS |
| TTAGGAAAGTACCTAGCAGA+AGG | 0.611161 | 8.4:-78321651 | None:intergenic |
| AGCGGCAAATATATGAAATG+AGG | 0.611343 | 8.4:+78321433 | MS.gene45434:CDS |
| CTGTGATCCGAATGGGTGGT+GGG | 0.612200 | 8.4:+78321316 | MS.gene45434:CDS |
| AGAGGATGTTGATGATTGTG+AGG | 0.615555 | 8.4:+78321776 | MS.gene45434:CDS |
| TGTTGATCGGTCCCATGATG+GGG | 0.620284 | 8.4:+78321896 | MS.gene45434:CDS |
| AGCAACCTGACTCTACAAGC+TGG | 0.620354 | 8.4:+78322756 | MS.gene45434:CDS |
| ATCACAGTTGAACGAGAAGG+TGG | 0.621729 | 8.4:-78321300 | None:intergenic |
| ATTTGTCAGATAATGTTGAT+CGG | 0.624654 | 8.4:+78321883 | MS.gene45434:CDS |
| GGAATAAAGGGAGTGCAAGG+AGG | 0.625678 | 8.4:+78322435 | MS.gene45434:CDS |
| GTGGTGGATTGAGAAAGAAT+GGG | 0.626874 | 8.4:+78322198 | MS.gene45434:CDS |
| CGGATCACAGTTGAACGAGA+AGG | 0.627012 | 8.4:-78321303 | None:intergenic |
| TTTGAGAATGAAAATGACAG+TGG | 0.628307 | 8.4:-78321207 | None:intergenic |
| AAAAGAATGGGAATGGAAGG+AGG | 0.632027 | 8.4:+78321859 | MS.gene45434:CDS |
| ATCCAGGTGGGGTGTCCAAG+TGG | 0.634467 | 8.4:+78321349 | MS.gene45434:CDS |
| TTGATAGAGAACAACTTAGG+GGG | 0.634929 | 8.4:-78321519 | None:intergenic |
| TCGGGAATAAAGGGAGTGCA+AGG | 0.635659 | 8.4:+78322432 | MS.gene45434:CDS |
| ATGGAATTACTCCCTCTCTG+TGG | 0.636479 | 8.4:-78322602 | None:intergenic |
| TGGGAGTAGGTATTCATTAG+GGG | 0.639409 | 8.4:+78322217 | MS.gene45434:CDS |
| GATTCAGAAAGAATGAAAGT+GGG | 0.640798 | 8.4:+78322087 | MS.gene45434:CDS |
| AGAAGTGAACTGAATGTTCG+TGG | 0.644976 | 8.4:+78322062 | MS.gene45434:CDS |
| TGACAGTGGTTGTACCACAT+TGG | 0.645037 | 8.4:-78321193 | None:intergenic |
| ACCGAGTTGAATGTTCGTGG+TGG | 0.650259 | 8.4:+78322182 | MS.gene45434:CDS |
| TGTCGATCAGTTCCATGATG+GGG | 0.663175 | 8.4:+78322130 | MS.gene45434:CDS |
| TCAACTGTGATCCGAATGGG+TGG | 0.663322 | 8.4:+78321312 | MS.gene45434:CDS |
| CTTCTGGCAAACCACAGAGA+GGG | 0.664375 | 8.4:+78322591 | MS.gene45434:CDS |
| AGCAGAAGGCAACTCATCAG+GGG | 0.664647 | 8.4:-78321637 | None:intergenic |
| TTTGATAGAGAACAACTTAG+GGG | 0.666749 | 8.4:-78321520 | None:intergenic |
| TCCACCACGAACATTCAACT+CGG | 0.667563 | 8.4:-78322183 | None:intergenic |
| AGATCGAGGAGGAAGGACAG+TGG | 0.678732 | 8.4:+78322509 | MS.gene45434:CDS |
| CTTCAAACAATGCTTCACGA+AGG | 0.679253 | 8.4:+78322660 | MS.gene45434:CDS |
| GAACGTGTTATCCGCCAATG+TGG | 0.680312 | 8.4:+78321179 | MS.gene45434:CDS |
| GAGGATGTTGATGATTGTGA+GGG | 0.685932 | 8.4:+78321777 | MS.gene45434:CDS |
| GATATGGAAAATATACTCAG+AGG | 0.693542 | 8.4:+78322636 | MS.gene45434:CDS |
| AGTGAATTGAATGTTCCTGG+TGG | 0.698565 | 8.4:+78321948 | MS.gene45434:CDS |
| GCTTCTGGCAAACCACAGAG+AGG | 0.700235 | 8.4:+78322590 | MS.gene45434:CDS |
| AATCTGGTGATATTAGATCG+AGG | 0.719396 | 8.4:+78322495 | MS.gene45434:CDS |
| AGTGAACTGAATGTTCGTGG+TGG | 0.720003 | 8.4:+78322065 | MS.gene45434:CDS |
| TCAGGGGTTTGAAACAACTG+TGG | 0.722897 | 8.4:-78321621 | None:intergenic |
| CTGGTGATATTAGATCGAGG+AGG | 0.764359 | 8.4:+78322498 | MS.gene45434:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTCTTCTTTGAATTCT+AGG | + | chr8.4:78322267-78322286 | MS.gene45434:CDS | 20.0% |
| ! | AAATATATGAAATGAGGAAG+AGG | + | chr8.4:78321439-78321458 | MS.gene45434:CDS | 25.0% |
| ! | AATATATGAAATGAGGAAGA+GGG | + | chr8.4:78321440-78321459 | MS.gene45434:CDS | 25.0% |
| ! | ATTTGTCAGATAATGTTGAT+CGG | + | chr8.4:78321883-78321902 | MS.gene45434:CDS | 25.0% |
| ! | GAATAATGATCTTCATTATC+TGG | - | chr8.4:78322254-78322273 | None:intergenic | 25.0% |
| ! | TAAACCCATATCATAAACTT+CGG | - | chr8.4:78322702-78322721 | None:intergenic | 25.0% |
| !!! | AATCTTTGTCAAGTTTTGAA+TGG | + | chr8.4:78321229-78321248 | MS.gene45434:CDS | 25.0% |
| AGATTCCGAAGTTTATGATA+TGG | + | chr8.4:78322694-78322713 | MS.gene45434:CDS | 30.0% | |
| ATTCTTCTTTGAATTCTAGG+AGG | + | chr8.4:78322270-78322289 | MS.gene45434:CDS | 30.0% | |
| CAAATATTGATGCTAGAATG+AGG | + | chr8.4:78322300-78322319 | MS.gene45434:CDS | 30.0% | |
| CTTCTTCTCCTTTGAATTAT+GGG | + | chr8.4:78321805-78321824 | MS.gene45434:CDS | 30.0% | |
| CTTTGATAGAGAACAACTTA+GGG | - | chr8.4:78321524-78321543 | None:intergenic | 30.0% | |
| GATATGGAAAATATACTCAG+AGG | + | chr8.4:78322636-78322655 | MS.gene45434:CDS | 30.0% | |
| GATTCAGAAAGAATGAAAGT+GGG | + | chr8.4:78322087-78322106 | MS.gene45434:CDS | 30.0% | |
| GATTCCGAAGTTTATGATAT+GGG | + | chr8.4:78322695-78322714 | MS.gene45434:CDS | 30.0% | |
| TCACTAGTAACCTTCATATA+AGG | - | chr8.4:78321699-78321718 | None:intergenic | 30.0% | |
| TCTTCTTCTCCTTTGAATTA+TGG | + | chr8.4:78321804-78321823 | MS.gene45434:CDS | 30.0% | |
| TTTGAGAATGAAAATGACAG+TGG | - | chr8.4:78321210-78321229 | None:intergenic | 30.0% | |
| TTTGATAGAGAACAACTTAG+GGG | - | chr8.4:78321523-78321542 | None:intergenic | 30.0% | |
| ! | TAGTATCAAGCCTTATATGA+AGG | + | chr8.4:78321686-78321705 | MS.gene45434:CDS | 30.0% |
| !! | TTATGTCAAAGGGTGTTAAT+GGG | + | chr8.4:78322540-78322559 | MS.gene45434:CDS | 30.0% |
| !! | TTTATGTCAAAGGGTGTTAA+TGG | + | chr8.4:78322539-78322558 | MS.gene45434:CDS | 30.0% |
| AATCTGGTGATATTAGATCG+AGG | + | chr8.4:78322495-78322514 | MS.gene45434:CDS | 35.0% | |
| AATGGGAGTAGGTATTCATT+AGG | + | chr8.4:78322215-78322234 | MS.gene45434:CDS | 35.0% | |
| AGCGGCAAATATATGAAATG+AGG | + | chr8.4:78321433-78321452 | MS.gene45434:CDS | 35.0% | |
| ATACTATGAACAACCCCTTT+AGG | - | chr8.4:78321672-78321691 | None:intergenic | 35.0% | |
| ATGGCAATTTCGGGAATAAA+GGG | + | chr8.4:78322423-78322442 | MS.gene45434:CDS | 35.0% | |
| ATGGGAGTAGGTATTCATTA+GGG | + | chr8.4:78322216-78322235 | MS.gene45434:CDS | 35.0% | |
| ATTCATTAGGGGATGTTGAT+CGG | + | chr8.4:78322228-78322247 | MS.gene45434:CDS | 35.0% | |
| ATTTGTCAGAGGATGTTGTT+CGG | + | chr8.4:78322000-78322019 | MS.gene45434:CDS | 35.0% | |
| GATATGGGTTTACAACAAGA+TGG | + | chr8.4:78322710-78322729 | MS.gene45434:CDS | 35.0% | |
| GCTTTGATAGAGAACAACTT+AGG | - | chr8.4:78321525-78321544 | None:intergenic | 35.0% | |
| GGAAAGAGGTTTATGTCAAA+GGG | + | chr8.4:78322530-78322549 | MS.gene45434:CDS | 35.0% | |
| GGAAGGAAGTTTATTCCAAA+GGG | + | chr8.4:78322335-78322354 | MS.gene45434:CDS | 35.0% | |
| GGATTCAGAAAGAATGAAAG+TGG | + | chr8.4:78322086-78322105 | MS.gene45434:CDS | 35.0% | |
| GTTCTTCTCATTTGAGTACT+AGG | + | chr8.4:78322039-78322058 | MS.gene45434:CDS | 35.0% | |
| GTTCTTCTCATTTGAGTACT+GGG | + | chr8.4:78322039-78322058 | MS.gene45434:CDS | 35.0% | |
| TGGAAAGAGGTTTATGTCAA+AGG | + | chr8.4:78322529-78322548 | MS.gene45434:CDS | 35.0% | |
| TGGAAGGAAGTTTATTCCAA+AGG | + | chr8.4:78322334-78322353 | MS.gene45434:CDS | 35.0% | |
| TTCAAACAATGCTTCACGAA+GGG | + | chr8.4:78322661-78322680 | MS.gene45434:CDS | 35.0% | |
| TTCTCCTTTGAATTATGGGA+GGG | + | chr8.4:78321809-78321828 | MS.gene45434:CDS | 35.0% | |
| TTGATAGAGAACAACTTAGG+GGG | - | chr8.4:78321522-78321541 | None:intergenic | 35.0% | |
| ! | TCTTTGAATTCTAGGAGGAA+TGG | + | chr8.4:78322275-78322294 | MS.gene45434:CDS | 35.0% |
| ! | TTATTCCAAAGGGTGTAGAT+GGG | + | chr8.4:78322345-78322364 | MS.gene45434:CDS | 35.0% |
| ! | TTTATTCCAAAGGGTGTAGA+TGG | + | chr8.4:78322344-78322363 | MS.gene45434:CDS | 35.0% |
| AAAAGAATGGGAATGGAAGG+AGG | + | chr8.4:78321859-78321878 | MS.gene45434:CDS | 40.0% | |
| AGAAGTGAACTGAATGTTCG+TGG | + | chr8.4:78322062-78322081 | MS.gene45434:CDS | 40.0% | |
| AGGAGTGAATTGAATGTTCC+TGG | + | chr8.4:78321945-78321964 | MS.gene45434:CDS | 40.0% | |
| AGTGAATTGAATGTTCCTGG+TGG | + | chr8.4:78321948-78321967 | MS.gene45434:CDS | 40.0% | |
| ATGTCGATCAGTTCCATGAT+GGG | + | chr8.4:78322129-78322148 | MS.gene45434:CDS | 40.0% | |
| CGATTGCAAAAGAATGGGAA+TGG | + | chr8.4:78321852-78321871 | MS.gene45434:CDS | 40.0% | |
| CGTTCTTCTCATTTGAGTAC+TGG | + | chr8.4:78322038-78322057 | MS.gene45434:CDS | 40.0% | |
| CTGCTAGGTACTTTCCTAAA+GGG | + | chr8.4:78321655-78321674 | MS.gene45434:CDS | 40.0% | |
| CTTCAAACAATGCTTCACGA+AGG | + | chr8.4:78322660-78322679 | MS.gene45434:CDS | 40.0% | |
| CTTCTCCTTTGAATTATGGG+AGG | + | chr8.4:78321808-78321827 | MS.gene45434:CDS | 40.0% | |
| GACCTTTGGACTGAAAATGA+TGG | + | chr8.4:78321597-78321616 | MS.gene45434:CDS | 40.0% | |
| GATGGCAATTTCGGGAATAA+AGG | + | chr8.4:78322422-78322441 | MS.gene45434:CDS | 40.0% | |
| GATTGAGAAAGAATGGGAGT+AGG | + | chr8.4:78322204-78322223 | MS.gene45434:CDS | 40.0% | |
| GCAGTCGATTGCAAAAGAAT+GGG | + | chr8.4:78321847-78321866 | MS.gene45434:CDS | 40.0% | |
| GCTGTTAGGTCTAATGAATC+TGG | + | chr8.4:78322479-78322498 | MS.gene45434:CDS | 40.0% | |
| GGATTGAAAAAGAACGGGAA+TGG | + | chr8.4:78321969-78321988 | MS.gene45434:CDS | 40.0% | |
| TCAGAAAGAATGAAAGTGGG+AGG | + | chr8.4:78322090-78322109 | MS.gene45434:CDS | 40.0% | |
| TCATCCCTCCCATAATTCAA+AGG | - | chr8.4:78321816-78321835 | None:intergenic | 40.0% | |
| TCTGCTAGGTACTTTCCTAA+AGG | + | chr8.4:78321654-78321673 | MS.gene45434:CDS | 40.0% | |
| TGAAAAAGAACGGGAATGGA+AGG | + | chr8.4:78321973-78321992 | MS.gene45434:CDS | 40.0% | |
| TGATATTAGATCGAGGAGGA+AGG | + | chr8.4:78322502-78322521 | MS.gene45434:CDS | 40.0% | |
| TGCAAAAGAATGGGAATGGA+AGG | + | chr8.4:78321856-78321875 | MS.gene45434:CDS | 40.0% | |
| TGCTAGGTACTTTCCTAAAG+GGG | + | chr8.4:78321656-78321675 | MS.gene45434:CDS | 40.0% | |
| TGGGAGTAGGTATTCATTAG+GGG | + | chr8.4:78322217-78322236 | MS.gene45434:CDS | 40.0% | |
| TTTCATATATTTGCCGCTCC+CGG | - | chr8.4:78321431-78321450 | None:intergenic | 40.0% | |
| ! | AGGGTGTTAATGGGTCTAAT+GGG | + | chr8.4:78322549-78322568 | MS.gene45434:CDS | 40.0% |
| ! | GGTTACTAGTGATGACTTGT+TGG | + | chr8.4:78321707-78321726 | MS.gene45434:CDS | 40.0% |
| ! | GTCCATCATTTTCAGTCCAA+AGG | - | chr8.4:78321602-78321621 | None:intergenic | 40.0% |
| ! | GTTTTGCTACAGTCACTGTA+AGG | - | chr8.4:78321281-78321300 | None:intergenic | 40.0% |
| !! | AAGGGTGTTAATGGGTCTAA+TGG | + | chr8.4:78322548-78322567 | MS.gene45434:CDS | 40.0% |
| !! | AGAGGATGTTGATGATTGTG+AGG | + | chr8.4:78321776-78321795 | MS.gene45434:CDS | 40.0% |
| !! | CCTGGTGGATTGAAAAAGAA+CGG | + | chr8.4:78321963-78321982 | MS.gene45434:CDS | 40.0% |
| !! | CGAGTTTTGATGGCAATTTC+GGG | + | chr8.4:78322414-78322433 | MS.gene45434:CDS | 40.0% |
| !! | CTGGTGGATTGAAAAAGAAC+GGG | + | chr8.4:78321964-78321983 | MS.gene45434:CDS | 40.0% |
| !! | GAGGATGTTGATGATTGTGA+GGG | + | chr8.4:78321777-78321796 | MS.gene45434:CDS | 40.0% |
| !! | GCGAGTTTTGATGGCAATTT+CGG | + | chr8.4:78322413-78322432 | MS.gene45434:CDS | 40.0% |
| !! | GTGGTGGATTGAGAAAGAAT+GGG | + | chr8.4:78322198-78322217 | MS.gene45434:CDS | 40.0% |
| !! | TACTAGTGATGACTTGTTGG+TGG | + | chr8.4:78321710-78321729 | MS.gene45434:CDS | 40.0% |
| !! | TTAGGAAAGTACCTAGCAGA+AGG | - | chr8.4:78321654-78321673 | None:intergenic | 40.0% |
| AAAAGAACGGGAATGGAAGG+AGG | + | chr8.4:78321976-78321995 | MS.gene45434:CDS | 45.0% | |
| AACAATGCTTCACGAAGGGT+TGG | + | chr8.4:78322665-78322684 | MS.gene45434:CDS | 45.0% | |
| AATGTTGATCGGTCCCATGA+TGG | + | chr8.4:78321894-78321913 | MS.gene45434:CDS | 45.0% | |
| AGAAGAACGCTCTCCATCAA+GGG | - | chr8.4:78322027-78322046 | None:intergenic | 45.0% | |
| AGAGGGAGTAATTCCATTGC+AGG | + | chr8.4:78322608-78322627 | MS.gene45434:CDS | 45.0% | |
| AGTGAACTGAATGTTCGTGG+TGG | + | chr8.4:78322065-78322084 | MS.gene45434:CDS | 45.0% | |
| ATAGGTTTCAGAAGCCTGGT+GGG | + | chr8.4:78321571-78321590 | MS.gene45434:CDS | 45.0% | |
| ATCACAGTTGAACGAGAAGG+TGG | - | chr8.4:78321303-78321322 | None:intergenic | 45.0% | |
| ATGGAATTACTCCCTCTCTG+TGG | - | chr8.4:78322605-78322624 | None:intergenic | 45.0% | |
| ATGTTGATCGGTCCCATGAT+GGG | + | chr8.4:78321895-78321914 | MS.gene45434:CDS | 45.0% | |
| CCACCATCTTCCAAAACATC+CGG | - | chr8.4:78321738-78321757 | None:intergenic | 45.0% | |
| CGTTCAACTGTGATCCGAAT+GGG | + | chr8.4:78321309-78321328 | MS.gene45434:CDS | 45.0% | |
| CTGGTGATATTAGATCGAGG+AGG | + | chr8.4:78322498-78322517 | MS.gene45434:CDS | 45.0% | |
| GAAGGCCAAGCAACTCTTAA+AGG | + | chr8.4:78321395-78321414 | MS.gene45434:CDS | 45.0% | |
| GATGCTAGAATGAGGAAGCA+CGG | + | chr8.4:78322308-78322327 | MS.gene45434:CDS | 45.0% | |
| GATGTCGATCAGTTCCATGA+TGG | + | chr8.4:78322128-78322147 | MS.gene45434:CDS | 45.0% | |
| GGCAGTCGATTGCAAAAGAA+TGG | + | chr8.4:78321846-78321865 | MS.gene45434:CDS | 45.0% | |
| TAGCAGAAGGCAACTCATCA+GGG | - | chr8.4:78321641-78321660 | None:intergenic | 45.0% | |
| TATGCAGGAAGAGATGCTTC+TGG | + | chr8.4:78322575-78322594 | MS.gene45434:CDS | 45.0% | |
| TCCACCACGAACATTCAACT+CGG | - | chr8.4:78322186-78322205 | None:intergenic | 45.0% | |
| TCGTTCAACTGTGATCCGAA+TGG | + | chr8.4:78321308-78321327 | MS.gene45434:CDS | 45.0% | |
| TGACAGTGGTTGTACCACAT+TGG | - | chr8.4:78321196-78321215 | None:intergenic | 45.0% | |
| TGGAACTGATCGACATCTTC+TGG | - | chr8.4:78322125-78322144 | None:intergenic | 45.0% | |
| TGTCGATCAGTTCCATGATG+GGG | + | chr8.4:78322130-78322149 | MS.gene45434:CDS | 45.0% | |
| ! | AAGACCGAGTTGAATGTTCG+TGG | + | chr8.4:78322179-78322198 | MS.gene45434:CDS | 45.0% |
| ! | ATGCTAGAATGAGGAAGCAC+GGG | + | chr8.4:78322309-78322328 | MS.gene45434:CDS | 45.0% |
| ! | GAATAAAGGGAGTGCAAGGA+GGG | + | chr8.4:78322436-78322455 | MS.gene45434:CDS | 45.0% |
| ! | TAAGAGTTGCTTGGCCTTCT+TGG | - | chr8.4:78321394-78321413 | None:intergenic | 45.0% |
| ! | TCAGGGGTTTGAAACAACTG+TGG | - | chr8.4:78321624-78321643 | None:intergenic | 45.0% |
| ! | TGATGAGCAGCTCAAGGTTT+TGG | + | chr8.4:78321545-78321564 | MS.gene45434:CDS | 45.0% |
| !! | AGGAATGGAGCGAGTTTTGA+TGG | + | chr8.4:78322404-78322423 | MS.gene45434:CDS | 45.0% |
| !! | AGGAGGGTTTTATCCAACGA+TGG | + | chr8.4:78322452-78322471 | MS.gene45434:CDS | 45.0% |
| !! | CGTGGTGGATTGAGAAAGAA+TGG | + | chr8.4:78322197-78322216 | MS.gene45434:CDS | 45.0% |
| !! | CTTCTCATTTGAGTGCTGAG+AGG | + | chr8.4:78321925-78321944 | MS.gene45434:CDS | 45.0% |
| !! | GATGTTGATGATTGTGAGGG+TGG | + | chr8.4:78321780-78321799 | MS.gene45434:CDS | 45.0% |
| !! | TGATGACTTGTTGGTGGAAC+CGG | + | chr8.4:78321716-78321735 | MS.gene45434:CDS | 45.0% |
| !! | TGGAAGGAGGTATTTGTCAG+AGG | + | chr8.4:78321872-78321891 | MS.gene45434:CDS | 45.0% |
| !!! | AGCTCAAGGTTTTGGCTGAT+AGG | + | chr8.4:78321553-78321572 | MS.gene45434:CDS | 45.0% |
| !!! | CCGTTCTTTTTCAATCCACC+AGG | - | chr8.4:78321966-78321985 | None:intergenic | 45.0% |
| !!! | GAACCGGATGTTTTGGAAGA+TGG | + | chr8.4:78321732-78321751 | MS.gene45434:CDS | 45.0% |
| !!! | GATGTTTTGGAAGATGGTGG+CGG | + | chr8.4:78321738-78321757 | MS.gene45434:CDS | 45.0% |
| AGAAGAACGCTCCCCATCAT+GGG | - | chr8.4:78321910-78321929 | None:intergenic | 50.0% | |
| AGCAACCTGACTCTACAAGC+TGG | + | chr8.4:78322756-78322775 | MS.gene45434:CDS | 50.0% | |
| AGCAGAAGGCAACTCATCAG+GGG | - | chr8.4:78321640-78321659 | None:intergenic | 50.0% | |
| CAAAGCTGATGAGCAGCTCA+AGG | + | chr8.4:78321539-78321558 | MS.gene45434:CDS | 50.0% | |
| CAGTGGTTGTACCACATTGG+CGG | - | chr8.4:78321193-78321212 | None:intergenic | 50.0% | |
| CATACGCTTCCATTGCCACT+TGG | - | chr8.4:78321367-78321386 | None:intergenic | 50.0% | |
| CCTAACAGCATCACCATCGT+TGG | - | chr8.4:78322468-78322487 | None:intergenic | 50.0% | |
| CGGATCACAGTTGAACGAGA+AGG | - | chr8.4:78321306-78321325 | None:intergenic | 50.0% | |
| CTAGCAGAAGGCAACTCATC+AGG | - | chr8.4:78321642-78321661 | None:intergenic | 50.0% | |
| CTGATGAGTTGCCTTCTGCT+AGG | + | chr8.4:78321640-78321659 | MS.gene45434:CDS | 50.0% | |
| CTTCTGGCAAACCACAGAGA+GGG | + | chr8.4:78322591-78322610 | MS.gene45434:CDS | 50.0% | |
| GAACGTGTTATCCGCCAATG+TGG | + | chr8.4:78321179-78321198 | MS.gene45434:CDS | 50.0% | |
| GAGAAGAACGCTCTCCATCA+AGG | - | chr8.4:78322028-78322047 | None:intergenic | 50.0% | |
| GATAGGTTTCAGAAGCCTGG+TGG | + | chr8.4:78321570-78321589 | MS.gene45434:CDS | 50.0% | |
| GATGTTGTTCGGTCCCTTGA+TGG | + | chr8.4:78322011-78322030 | MS.gene45434:CDS | 50.0% | |
| GCTGATAGGTTTCAGAAGCC+TGG | + | chr8.4:78321567-78321586 | MS.gene45434:CDS | 50.0% | |
| GGAGTAATTCCATTGCAGGC+AGG | + | chr8.4:78322612-78322631 | MS.gene45434:CDS | 50.0% | |
| GGGAGGGATGAAGTGAATGT+TGG | + | chr8.4:78321825-78321844 | MS.gene45434:CDS | 50.0% | |
| GGGTCTAATGGGATGTATGC+AGG | + | chr8.4:78322560-78322579 | MS.gene45434:CDS | 50.0% | |
| GTTCTTCTCCTTCACATGCG+AGG | + | chr8.4:78322384-78322403 | MS.gene45434:CDS | 50.0% | |
| TAAGGCTGCTGTCTCTGAGT+TGG | + | chr8.4:78321470-78321489 | MS.gene45434:CDS | 50.0% | |
| TCAACTGTGATCCGAATGGG+TGG | + | chr8.4:78321312-78321331 | MS.gene45434:CDS | 50.0% | |
| TCCATATCTCCTGCCTGCAA+TGG | - | chr8.4:78322624-78322643 | None:intergenic | 50.0% | |
| TCCATTGCAGGCAGGAGATA+TGG | + | chr8.4:78322620-78322639 | MS.gene45434:CDS | 50.0% | |
| TCTCCTTCACATGCGAGGAA+TGG | + | chr8.4:78322389-78322408 | MS.gene45434:CDS | 50.0% | |
| TGTTGATCGGTCCCATGATG+GGG | + | chr8.4:78321896-78321915 | MS.gene45434:CDS | 50.0% | |
| ! | ACCGAGTTGAATGTTCGTGG+TGG | + | chr8.4:78322182-78322201 | MS.gene45434:CDS | 50.0% |
| ! | AGAATGAGGAAGCACGGGAA+TGG | + | chr8.4:78322314-78322333 | MS.gene45434:CDS | 50.0% |
| ! | CCAACGATGGTGATGCTGTT+AGG | + | chr8.4:78322465-78322484 | MS.gene45434:CDS | 50.0% |
| ! | GGAATAAAGGGAGTGCAAGG+AGG | + | chr8.4:78322435-78322454 | MS.gene45434:CDS | 50.0% |
| ! | TCCAAAGGGTGTAGATGGGT+CGG | + | chr8.4:78322349-78322368 | MS.gene45434:CDS | 50.0% |
| ! | TCGCGCCTTTAAGAGTTGCT+TGG | - | chr8.4:78321403-78321422 | None:intergenic | 50.0% |
| ! | TCGGGAATAAAGGGAGTGCA+AGG | + | chr8.4:78322432-78322451 | MS.gene45434:CDS | 50.0% |
| !! | GTTGGTGGAACCGGATGTTT+TGG | + | chr8.4:78321725-78321744 | MS.gene45434:CDS | 50.0% |
| !!! | CCGGATGTTTTGGAAGATGG+TGG | + | chr8.4:78321735-78321754 | MS.gene45434:CDS | 50.0% |
| ACTGTGATCCGAATGGGTGG+TGG | + | chr8.4:78321315-78321334 | MS.gene45434:CDS | 55.0% | |
| AGATCGAGGAGGAAGGACAG+TGG | + | chr8.4:78322509-78322528 | MS.gene45434:CDS | 55.0% | |
| CTGTGATCCGAATGGGTGGT+GGG | + | chr8.4:78321316-78321335 | MS.gene45434:CDS | 55.0% | |
| GAAGCGTATGCAGGCCAAGA+AGG | + | chr8.4:78321377-78321396 | MS.gene45434:CDS | 55.0% | |
| GAGAAGAACGCTCCCCATCA+TGG | - | chr8.4:78321911-78321930 | None:intergenic | 55.0% | |
| GAGGAAGAGGGCTGAGCTTA+AGG | + | chr8.4:78321452-78321471 | MS.gene45434:CDS | 55.0% | |
| GCTCCATTCCTCGCATGTGA+AGG | - | chr8.4:78322395-78322414 | None:intergenic | 55.0% | |
| GCTTCTGGCAAACCACAGAG+AGG | + | chr8.4:78322590-78322609 | MS.gene45434:CDS | 55.0% | |
| GGAGGAAGGACAGTGGAAAG+AGG | + | chr8.4:78322516-78322535 | MS.gene45434:CDS | 55.0% | |
| GTCCAAAGGTCAAACCCACC+AGG | - | chr8.4:78321588-78321607 | None:intergenic | 55.0% | |
| TCCGACCCATCTACACCCTT+TGG | - | chr8.4:78322353-78322372 | None:intergenic | 55.0% | |
| ! | CTCTGAGTTGGAGAGGCCTT+GGG | + | chr8.4:78321482-78321501 | MS.gene45434:CDS | 55.0% |
| ! | CTGCTGTCTCTGAGTTGGAG+AGG | + | chr8.4:78321475-78321494 | MS.gene45434:CDS | 55.0% |
| ! | GTGGCAATGGAAGCGTATGC+AGG | + | chr8.4:78321368-78321387 | MS.gene45434:CDS | 55.0% |
| ! | TCTCTGAGTTGGAGAGGCCT+TGG | + | chr8.4:78321481-78321500 | MS.gene45434:CDS | 55.0% |
| ! | TCTTAAAGGCGCGACTGTGC+CGG | + | chr8.4:78321409-78321428 | MS.gene45434:CDS | 55.0% |
| ! | TGAGGAAGCACGGGAATGGA+AGG | + | chr8.4:78322318-78322337 | MS.gene45434:CDS | 55.0% |
| !! | AGCCTGGTGGGTTTGACCTT+TGG | + | chr8.4:78321583-78321602 | MS.gene45434:CDS | 55.0% |
| !! | ATGGTGGCGGTGAAGGGTAT+TGG | + | chr8.4:78321751-78321770 | MS.gene45434:CDS | 55.0% |
| !! | CGGTGAAGGGTATTGGTCAG+AGG | + | chr8.4:78321758-78321777 | MS.gene45434:CDS | 55.0% |
| !! | TGGAAGATGGTGGCGGTGAA+GGG | + | chr8.4:78321745-78321764 | MS.gene45434:CDS | 55.0% |
| !! | TTGGAAGATGGTGGCGGTGA+AGG | + | chr8.4:78321744-78321763 | MS.gene45434:CDS | 55.0% |
| ACCCCACCTGGATACGTCCT+TGG | - | chr8.4:78321342-78321361 | None:intergenic | 60.0% | |
| GCCAAGGACGTATCCAGGTG+GGG | + | chr8.4:78321338-78321357 | MS.gene45434:CDS | 60.0% | |
| GGCCAAGGACGTATCCAGGT+GGG | + | chr8.4:78321337-78321356 | MS.gene45434:CDS | 60.0% | |
| GGCTTCTCAACCACCTCCCA+AGG | - | chr8.4:78321501-78321520 | None:intergenic | 60.0% | |
| TCCTTGGCCCACCACCCATT+CGG | - | chr8.4:78321326-78321345 | None:intergenic | 60.0% | |
| ! | ATCCAGGTGGGGTGTCCAAG+TGG | + | chr8.4:78321349-78321368 | MS.gene45434:CDS | 60.0% |
| ! | CTTAAAGGCGCGACTGTGCC+GGG | + | chr8.4:78321410-78321429 | MS.gene45434:CDS | 60.0% |
| ! | GTGGGGTGTCCAAGTGGCAA+TGG | + | chr8.4:78321355-78321374 | MS.gene45434:CDS | 60.0% |
| ! | TGAGTTGGAGAGGCCTTGGG+AGG | + | chr8.4:78321485-78321504 | MS.gene45434:CDS | 60.0% |
| GGGCCAAGGACGTATCCAGG+TGG | + | chr8.4:78321336-78321355 | MS.gene45434:CDS | 65.0% | |
| GGTGGGCCAAGGACGTATCC+AGG | + | chr8.4:78321333-78321352 | MS.gene45434:CDS | 65.0% | |
| GTTGGAGAGGCCTTGGGAGG+TGG | + | chr8.4:78321488-78321507 | MS.gene45434:CDS | 65.0% | |
| ! | TGCCACTTGGACACCCCACC+TGG | - | chr8.4:78321354-78321373 | None:intergenic | 65.0% |
| !! | TCCGAATGGGTGGTGGGCCA+AGG | + | chr8.4:78321322-78321341 | MS.gene45434:CDS | 65.0% |
| AGGCGCGACTGTGCCGGGAG+CGG | + | chr8.4:78321415-78321434 | MS.gene45434:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 78321177 | 78322781 | 78321177 | ID=MS.gene45434 |
| chr8.4 | mRNA | 78321177 | 78322781 | 78321177 | ID=MS.gene45434.t1;Parent=MS.gene45434 |
| chr8.4 | exon | 78321177 | 78322781 | 78321177 | ID=MS.gene45434.t1.exon1;Parent=MS.gene45434.t1 |
| chr8.4 | CDS | 78321177 | 78322781 | 78321177 | ID=cds.MS.gene45434.t1;Parent=MS.gene45434.t1 |
| Gene Sequence |
| Protein sequence |
