Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54904.t1 | XP_013455470.1 | 95.7 | 874 | 34 | 3 | 1 | 874 | 1 | 870 | 0.00E+00 | 1507.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54904.t1 | Q03164 | 26.5 | 204 | 131 | 7 | 140 | 334 | 1431 | 1624 | 2.2e-16 | 89.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54904.t1 | A0A072UJ97 | 95.7 | 874 | 34 | 3 | 1 | 874 | 1 | 870 | 0.0e+00 | 1507.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene54904.t1 | TR | PHD |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene54904 | 0.835345 | 1.77E-56 | -1.69E-46 |
| MS.gene049159 | MS.gene54904 | 0.808704 | 2.72E-50 | -1.69E-46 |
| MS.gene049264 | MS.gene54904 | 0.809572 | 1.77E-50 | -1.69E-46 |
| MS.gene049368 | MS.gene54904 | 0.805361 | 1.39E-49 | -1.69E-46 |
| MS.gene049983 | MS.gene54904 | 0.808578 | 2.89E-50 | -1.69E-46 |
| MS.gene050114 | MS.gene54904 | 0.811445 | 6.97E-51 | -1.69E-46 |
| MS.gene050654 | MS.gene54904 | 0.832473 | 9.26E-56 | -1.69E-46 |
| MS.gene050762 | MS.gene54904 | 0.80579 | 1.13E-49 | -1.69E-46 |
| MS.gene050763 | MS.gene54904 | 0.807289 | 5.44E-50 | -1.69E-46 |
| MS.gene050941 | MS.gene54904 | 0.853136 | 2.92E-61 | -1.69E-46 |
| MS.gene051210 | MS.gene54904 | 0.801275 | 9.72E-49 | -1.69E-46 |
| MS.gene051490 | MS.gene54904 | 0.801256 | 9.81E-49 | -1.69E-46 |
| MS.gene051975 | MS.gene54904 | 0.819172 | 1.34E-52 | -1.69E-46 |
| MS.gene052012 | MS.gene54904 | 0.808298 | 3.32E-50 | -1.69E-46 |
| MS.gene052434 | MS.gene54904 | 0.802759 | 4.82E-49 | -1.69E-46 |
| MS.gene052674 | MS.gene54904 | 0.802532 | 5.36E-49 | -1.69E-46 |
| MS.gene052675 | MS.gene54904 | 0.800924 | 1.15E-48 | -1.69E-46 |
| MS.gene052677 | MS.gene54904 | 0.801784 | 7.65E-49 | -1.69E-46 |
| MS.gene052776 | MS.gene54904 | 0.820598 | 6.30E-53 | -1.69E-46 |
| MS.gene053008 | MS.gene54904 | 0.825417 | 4.74E-54 | -1.69E-46 |
| MS.gene053058 | MS.gene54904 | 0.812466 | 4.18E-51 | -1.69E-46 |
| MS.gene053726 | MS.gene54904 | 0.813088 | 3.06E-51 | -1.69E-46 |
| MS.gene054139 | MS.gene54904 | 0.827614 | 1.42E-54 | -1.69E-46 |
| MS.gene054379 | MS.gene54904 | 0.805372 | 1.38E-49 | -1.69E-46 |
| MS.gene054479 | MS.gene54904 | 0.839287 | 1.73E-57 | -1.69E-46 |
| MS.gene054823 | MS.gene54904 | 0.805255 | 1.46E-49 | -1.69E-46 |
| MS.gene05517 | MS.gene54904 | 0.807709 | 4.43E-50 | -1.69E-46 |
| MS.gene055310 | MS.gene54904 | 0.813309 | 2.73E-51 | -1.69E-46 |
| MS.gene055311 | MS.gene54904 | 0.846646 | 1.91E-59 | -1.69E-46 |
| MS.gene055313 | MS.gene54904 | 0.851695 | 7.50E-61 | -1.69E-46 |
| MS.gene055314 | MS.gene54904 | 0.819225 | 1.30E-52 | -1.69E-46 |
| MS.gene055513 | MS.gene54904 | 0.837258 | 5.78E-57 | -1.69E-46 |
| MS.gene055603 | MS.gene54904 | 0.812823 | 3.49E-51 | -1.69E-46 |
| MS.gene055623 | MS.gene54904 | 0.807968 | 3.90E-50 | -1.69E-46 |
| MS.gene055864 | MS.gene54904 | 0.857431 | 1.64E-62 | -1.69E-46 |
| MS.gene055926 | MS.gene54904 | 0.83505 | 2.10E-56 | -1.69E-46 |
| MS.gene056045 | MS.gene54904 | 0.851941 | 6.39E-61 | -1.69E-46 |
| MS.gene056181 | MS.gene54904 | 0.845967 | 2.92E-59 | -1.69E-46 |
| MS.gene056480 | MS.gene54904 | 0.802665 | 5.04E-49 | -1.69E-46 |
| MS.gene056509 | MS.gene54904 | 0.803409 | 3.53E-49 | -1.69E-46 |
| MS.gene056787 | MS.gene54904 | 0.839296 | 1.73E-57 | -1.69E-46 |
| MS.gene056831 | MS.gene54904 | 0.816092 | 6.61E-52 | -1.69E-46 |
| MS.gene056901 | MS.gene54904 | 0.823037 | 1.72E-53 | -1.69E-46 |
| MS.gene057034 | MS.gene54904 | 0.830035 | 3.68E-55 | -1.69E-46 |
| MS.gene057360 | MS.gene54904 | 0.806853 | 6.72E-50 | -1.69E-46 |
| MS.gene057915 | MS.gene54904 | 0.80196 | 7.03E-49 | -1.69E-46 |
| MS.gene058081 | MS.gene54904 | 0.833099 | 6.48E-56 | -1.69E-46 |
| MS.gene058292 | MS.gene54904 | 0.828947 | 6.77E-55 | -1.69E-46 |
| MS.gene058548 | MS.gene54904 | 0.800869 | 1.18E-48 | -1.69E-46 |
| MS.gene058595 | MS.gene54904 | 0.803973 | 2.70E-49 | -1.69E-46 |
| MS.gene058638 | MS.gene54904 | 0.806424 | 8.28E-50 | -1.69E-46 |
| MS.gene058639 | MS.gene54904 | 0.813704 | 2.24E-51 | -1.69E-46 |
| MS.gene058646 | MS.gene54904 | 0.813631 | 2.32E-51 | -1.69E-46 |
| MS.gene058758 | MS.gene54904 | 0.802022 | 6.83E-49 | -1.69E-46 |
| MS.gene059283 | MS.gene54904 | 0.852363 | 4.85E-61 | -1.69E-46 |
| MS.gene059439 | MS.gene54904 | 0.81588 | 7.37E-52 | -1.69E-46 |
| MS.gene059725 | MS.gene54904 | 0.808457 | 3.07E-50 | -1.69E-46 |
| MS.gene05973 | MS.gene54904 | 0.801044 | 1.08E-48 | -1.69E-46 |
| MS.gene06010 | MS.gene54904 | 0.840444 | 8.66E-58 | -1.69E-46 |
| MS.gene060191 | MS.gene54904 | 0.853125 | 2.94E-61 | -1.69E-46 |
| MS.gene060296 | MS.gene54904 | 0.875882 | 2.17E-68 | -1.69E-46 |
| MS.gene060380 | MS.gene54904 | 0.801025 | 1.09E-48 | -1.69E-46 |
| MS.gene060435 | MS.gene54904 | 0.804634 | 1.97E-49 | -1.69E-46 |
| MS.gene06052 | MS.gene54904 | 0.824846 | 6.47E-54 | -1.69E-46 |
| MS.gene060637 | MS.gene54904 | 0.834283 | 3.28E-56 | -1.69E-46 |
| MS.gene060777 | MS.gene54904 | 0.825058 | 5.77E-54 | -1.69E-46 |
| MS.gene060802 | MS.gene54904 | 0.840591 | 7.93E-58 | -1.69E-46 |
| MS.gene060803 | MS.gene54904 | 0.821214 | 4.55E-53 | -1.69E-46 |
| MS.gene060850 | MS.gene54904 | 0.801425 | 9.06E-49 | -1.69E-46 |
| MS.gene060851 | MS.gene54904 | 0.801641 | 8.18E-49 | -1.69E-46 |
| MS.gene060852 | MS.gene54904 | 0.800747 | 1.25E-48 | -1.69E-46 |
| MS.gene060869 | MS.gene54904 | 0.813564 | 2.40E-51 | -1.69E-46 |
| MS.gene060870 | MS.gene54904 | 0.844602 | 6.83E-59 | -1.69E-46 |
| MS.gene060932 | MS.gene54904 | 0.832063 | 1.17E-55 | -1.69E-46 |
| MS.gene060933 | MS.gene54904 | 0.810816 | 9.55E-51 | -1.69E-46 |
| MS.gene060937 | MS.gene54904 | 0.804453 | 2.14E-49 | -1.69E-46 |
| MS.gene060998 | MS.gene54904 | 0.831016 | 2.12E-55 | -1.69E-46 |
| MS.gene06121 | MS.gene54904 | 0.843516 | 1.34E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54904.t1 | MTR_4g037745 | 95.767 | 874 | 33 | 3 | 1 | 874 | 1 | 870 | 0.0 | 1654 |
| MS.gene54904.t1 | MTR_7g117355 | 38.571 | 70 | 40 | 1 | 268 | 337 | 339 | 405 | 5.85e-11 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54904.t1 | AT3G08020 | 49.944 | 895 | 311 | 18 | 1 | 874 | 1 | 779 | 0.0 | 779 |
| MS.gene54904.t1 | AT3G52100 | 61.097 | 383 | 133 | 7 | 1 | 375 | 1 | 375 | 3.71e-158 | 479 |
| MS.gene54904.t1 | AT3G52100 | 33.252 | 409 | 174 | 13 | 474 | 874 | 361 | 678 | 1.71e-37 | 150 |
| MS.gene54904.t1 | AT3G52100 | 61.097 | 383 | 133 | 7 | 1 | 375 | 1 | 375 | 1.05e-157 | 477 |
| MS.gene54904.t1 | AT3G52100 | 30.663 | 362 | 154 | 11 | 474 | 829 | 361 | 631 | 1.13e-25 | 114 |
| MS.gene54904.t1 | AT3G52100 | 59.091 | 396 | 138 | 8 | 1 | 375 | 1 | 393 | 8.91e-156 | 473 |
| MS.gene54904.t1 | AT3G52100 | 33.252 | 409 | 174 | 13 | 474 | 874 | 379 | 696 | 2.57e-37 | 150 |
| MS.gene54904.t1 | AT3G52100 | 65.979 | 291 | 93 | 2 | 85 | 375 | 4 | 288 | 1.40e-134 | 414 |
| MS.gene54904.t1 | AT3G52100 | 33.252 | 409 | 174 | 13 | 474 | 874 | 274 | 591 | 6.73e-38 | 150 |
Find 196 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATAAGTTGGTTATAAATT+TGG | 0.123019 | 4.4:-65956137 | MS.gene54904:CDS |
| AAGCAATAAGGCAAATATTT+TGG | 0.136146 | 4.4:-65956209 | MS.gene54904:CDS |
| AACAATGATCTTTCTTTAAA+AGG | 0.142690 | 4.4:+65955020 | None:intergenic |
| TGAAATTCATAGGTGGTTTC+TGG | 0.153491 | 4.4:-65959408 | MS.gene54904:intron |
| CATCTTGGTAGGTGAATTAT+TGG | 0.205189 | 4.4:+65956546 | None:intergenic |
| TGGCCAGTCAAAACATTTAA+AGG | 0.217949 | 4.4:-65955456 | MS.gene54904:CDS |
| AATAAGTTGGTTATAAATTT+GGG | 0.260701 | 4.4:-65956136 | MS.gene54904:CDS |
| AAGAAGCATTACCATGTAAT+TGG | 0.262907 | 4.4:+65962838 | None:intergenic |
| AGCATCACGCTTAGCTTTCA+TGG | 0.266381 | 4.4:+65962453 | None:intergenic |
| ATCAGACATCCGATGATTCT+TGG | 0.268452 | 4.4:-65954845 | MS.gene54904:intron |
| GATTCCCATCCACTTGAAAT+TGG | 0.272368 | 4.4:+65956914 | None:intergenic |
| CCTACCAAGATGAATGATTA+TGG | 0.283895 | 4.4:-65956535 | MS.gene54904:CDS |
| CCGCTAACAGCAACAATTTC+CGG | 0.284119 | 4.4:+65962517 | None:intergenic |
| ATTTATTTCATTGGAGTTCA+TGG | 0.288581 | 4.4:-65961094 | MS.gene54904:CDS |
| TAACCAGATCTTGATCTCTT+TGG | 0.295044 | 4.4:+65956062 | None:intergenic |
| TCAAAACATTTAAAGGTTTA+CGG | 0.306095 | 4.4:-65955449 | MS.gene54904:CDS |
| TATCAGGACCTTCATTTCTC+TGG | 0.307104 | 4.4:+65956377 | None:intergenic |
| GATACATCGGGCAATCTTAA+TGG | 0.308661 | 4.4:-65961353 | MS.gene54904:CDS |
| AGTGAAGGTTTAGAATCTTT+TGG | 0.315117 | 4.4:+65955146 | None:intergenic |
| TTTGCAGAACATGAACTTAC+TGG | 0.319396 | 4.4:+65960187 | None:intergenic |
| CTATCCTCATCGTCAGAATA+TGG | 0.325229 | 4.4:+65956631 | None:intergenic |
| CTTGTTTCCCTTTGTCAAAT+GGG | 0.326959 | 4.4:+65955673 | None:intergenic |
| GGCGGCGGTGGCACCACTTT+CGG | 0.327840 | 4.4:+65962541 | None:intergenic |
| TCAGGAAGTAGGGTTGATTC+TGG | 0.334958 | 4.4:-65955476 | MS.gene54904:intron |
| ATTGCCAGTGTGATGATATT+AGG | 0.335400 | 4.4:-65958793 | MS.gene54904:intron |
| AGAATTTGTTTCTGTTCGTT+AGG | 0.339995 | 4.4:-65962688 | MS.gene54904:CDS |
| AGGATGCTGTTCAAGAGCTT+TGG | 0.345011 | 4.4:-65956744 | MS.gene54904:CDS |
| AAGAGGTGAAAAGACGTATT+TGG | 0.348962 | 4.4:-65955243 | MS.gene54904:CDS |
| TATCTTGGAACTCAGGAAAC+AGG | 0.349912 | 4.4:-65954310 | MS.gene54904:CDS |
| TGTGTGTTTCGGGCACAAAT+AGG | 0.351103 | 4.4:+65960021 | None:intergenic |
| TGTTCGAATTAAAAGCAATA+AGG | 0.361567 | 4.4:-65956221 | MS.gene54904:CDS |
| ACTTGTTTCCCTTTGTCAAA+TGG | 0.370484 | 4.4:+65955672 | None:intergenic |
| CAATCTTAATGGAGACGAAC+AGG | 0.376065 | 4.4:-65961342 | MS.gene54904:CDS |
| GTGTGTTTCGGGCACAAATA+GGG | 0.377093 | 4.4:+65960022 | None:intergenic |
| TCAAGGGCCAGAGGTCAAAA+AGG | 0.391669 | 4.4:-65955055 | MS.gene54904:CDS |
| GGGTGAAGTTGGTCCTTTAG+AGG | 0.394114 | 4.4:-65955336 | MS.gene54904:CDS |
| GAAATTCATAGGTGGTTTCT+GGG | 0.395520 | 4.4:-65959407 | MS.gene54904:intron |
| CCGTTATTACCTCACAAATT+CGG | 0.395579 | 4.4:+65961057 | None:intergenic |
| GGTGATGAATAAATAATATC+AGG | 0.397412 | 4.4:+65956361 | None:intergenic |
| TTGTCGTGGGGAATGTTATC+AGG | 0.399762 | 4.4:-65956872 | MS.gene54904:intron |
| TATTAGATCTTTACATAGCT+TGG | 0.401339 | 4.4:-65956413 | MS.gene54904:CDS |
| ATGATCAACCAAGTTGGATT+AGG | 0.402380 | 4.4:-65955275 | MS.gene54904:CDS |
| AAAATCCCTGTCTGATTGAC+AGG | 0.418712 | 4.4:+65956301 | None:intergenic |
| ATGAGAACATGGATGCAAAC+TGG | 0.421404 | 4.4:-65954917 | MS.gene54904:CDS |
| GAAAATATTTCTTCTTGTGT+TGG | 0.421725 | 4.4:+65956661 | None:intergenic |
| TGACCTCTGGCCCTTGATAG+TGG | 0.426050 | 4.4:+65955061 | None:intergenic |
| CCGGAAATTGTTGCTGTTAG+CGG | 0.434395 | 4.4:-65962517 | MS.gene54904:CDS |
| ATGCTGTTCAAGAGCTTTGG+AGG | 0.441727 | 4.4:-65956741 | MS.gene54904:CDS |
| ATTTATTCATCACCTGCTAC+TGG | 0.449750 | 4.4:-65956352 | MS.gene54904:CDS |
| ATAGGAGCTGCTTGAAAAGT+TGG | 0.450677 | 4.4:-65961211 | MS.gene54904:CDS |
| ATCAGGACCTTCATTTCTCT+GGG | 0.451501 | 4.4:+65956378 | None:intergenic |
| CTACATGTTACTTACGATGA+TGG | 0.452765 | 4.4:-65954342 | MS.gene54904:CDS |
| ATCTTGGTAGGTGAATTATT+GGG | 0.454003 | 4.4:+65956547 | None:intergenic |
| ATTGTTGCTGTTAGCGGTGG+TGG | 0.455700 | 4.4:-65962511 | MS.gene54904:CDS |
| GAATTTGTTTCTGTTCGTTA+GGG | 0.455855 | 4.4:-65962687 | MS.gene54904:CDS |
| ACAATTTCCGGCGGCGGCGG+TGG | 0.459269 | 4.4:+65962529 | None:intergenic |
| GTTAGCGGTGGTGGTGGTGG+TGG | 0.459911 | 4.4:-65962502 | MS.gene54904:CDS |
| TATCACCAATTTCAAGTGGA+TGG | 0.460018 | 4.4:-65956919 | MS.gene54904:CDS |
| AGGCACAAGGGAGAGGTGAC+TGG | 0.460865 | 4.4:-65954387 | MS.gene54904:CDS |
| TATGCTAGGAGGCTTGAATC+TGG | 0.462814 | 4.4:-65962388 | MS.gene54904:CDS |
| GGTGAAGTTGGTCCTTTAGA+GGG | 0.464502 | 4.4:-65955335 | MS.gene54904:CDS |
| TGACTCAAGCTTCCAGTAGC+AGG | 0.469535 | 4.4:+65956340 | None:intergenic |
| TCTGAATTCAACTTCACCTC+TGG | 0.469813 | 4.4:-65955380 | MS.gene54904:CDS |
| CTTTCCATAATCATTCATCT+TGG | 0.470156 | 4.4:+65956531 | None:intergenic |
| GATACAGACTCTACCTTATG+AGG | 0.470210 | 4.4:+65960125 | None:intergenic |
| TGATGGAAAAGTAAGTATCT+TGG | 0.471023 | 4.4:-65954325 | MS.gene54904:CDS |
| GCTGTTAGCGGTGGTGGTGG+TGG | 0.472919 | 4.4:-65962505 | MS.gene54904:CDS |
| AAGTAGTCAAAATTCTCATC+AGG | 0.477175 | 4.4:-65955096 | MS.gene54904:CDS |
| GAAGGTGCAAGTCAATCTCT+TGG | 0.479985 | 4.4:-65954954 | MS.gene54904:CDS |
| AATTCAACCCATTTGACAAA+GGG | 0.483325 | 4.4:-65955680 | MS.gene54904:CDS |
| GATCTTTCTTTAAAAGGTGA+AGG | 0.485940 | 4.4:+65955026 | None:intergenic |
| CTGTCTGCAACCTCCTCATA+AGG | 0.486512 | 4.4:-65960138 | MS.gene54904:intron |
| ACAAATTCGGCAAGCACGGC+AGG | 0.495002 | 4.4:+65961070 | None:intergenic |
| GATAGACACAATGGAGCAGC+TGG | 0.496318 | 4.4:-65955641 | MS.gene54904:CDS |
| ACGTTGCTTGTCCAATTACA+TGG | 0.496718 | 4.4:-65962849 | MS.gene54904:intron |
| ATAATGCAGAATGTTAGTAC+TGG | 0.497183 | 4.4:-65960046 | MS.gene54904:intron |
| GGGTTTCCGCGTTCTCTGAA+CGG | 0.498481 | 4.4:-65962667 | MS.gene54904:CDS |
| CGTGATGCTCTTCAGAGAAA+AGG | 0.498878 | 4.4:-65962439 | MS.gene54904:CDS |
| AAAAGTTGGTCTAATAATAG+AGG | 0.500565 | 4.4:-65961197 | MS.gene54904:intron |
| CTGGGAATGGACTAAGTGTC+AGG | 0.500974 | 4.4:-65959970 | MS.gene54904:intron |
| GTAAGTAACATGTAGATTTG+AGG | 0.501844 | 4.4:+65954350 | None:intergenic |
| GGAGCAGCTGGAGATATTGA+TGG | 0.502562 | 4.4:-65955629 | MS.gene54904:CDS |
| TCTTGTCCTGTCAATCAGAC+AGG | 0.503014 | 4.4:-65956307 | MS.gene54904:CDS |
| GTTGTAGTAAGAAGTACCAT+AGG | 0.505771 | 4.4:-65961229 | MS.gene54904:CDS |
| AAGATTTAATTACCAGCTTG+AGG | 0.507382 | 4.4:-65956699 | MS.gene54904:CDS |
| AGAGGAGAAGACCACTATCA+AGG | 0.508228 | 4.4:-65955072 | MS.gene54904:CDS |
| TTGCAGAACATGAACTTACT+GGG | 0.510009 | 4.4:+65960188 | None:intergenic |
| TGCTGCTATGATTGCTGCTG+AGG | 0.512543 | 4.4:-65962413 | MS.gene54904:CDS |
| GCAACAATTTCCGGCGGCGG+CGG | 0.514824 | 4.4:+65962526 | None:intergenic |
| AGATTTAATTACCAGCTTGA+GGG | 0.515066 | 4.4:-65956698 | MS.gene54904:CDS |
| ATCTAGGCTTGCAGAAGGAC+TGG | 0.515563 | 4.4:-65960215 | MS.gene54904:intron |
| ACCAGCTTGAGGGCTGCAGC+TGG | 0.516002 | 4.4:-65956688 | MS.gene54904:CDS |
| GCTGTGATCATTGCCAACGC+TGG | 0.517113 | 4.4:-65958820 | MS.gene54904:CDS |
| GAATCACTCTTTAACTTCAA+AGG | 0.517532 | 4.4:+65956604 | None:intergenic |
| TTCAACTTCACCTCTGGTAG+AGG | 0.517716 | 4.4:-65955374 | MS.gene54904:CDS |
| TTTGTCCAGGCACAAGGGAG+AGG | 0.519232 | 4.4:-65954394 | MS.gene54904:intron |
| TTAAAGGTTTACGGAAGAGA+AGG | 0.519410 | 4.4:-65955440 | MS.gene54904:CDS |
| CAAGATCTGGTTACTGCCAA+TGG | 0.520282 | 4.4:-65956052 | MS.gene54904:intron |
| AGTGGTGCCACCGCCGCCGC+CGG | 0.520952 | 4.4:-65962536 | MS.gene54904:CDS |
| CGGGGAAAACGTAATACTCA+TGG | 0.521412 | 4.4:-65955299 | MS.gene54904:CDS |
| CCATAATCATTCATCTTGGT+AGG | 0.524350 | 4.4:+65956535 | None:intergenic |
| ATGCAATCCCAGAGAAATGA+AGG | 0.526674 | 4.4:-65956385 | MS.gene54904:CDS |
| TCGACAAAAGACCTTTACAT+TGG | 0.526937 | 4.4:+65961313 | None:intergenic |
| AGTTGCGCATCCAATGTCCC+TGG | 0.528835 | 4.4:-65959989 | MS.gene54904:CDS |
| GTAGAGGCAATATGTTGGAT+GGG | 0.530094 | 4.4:-65955358 | MS.gene54904:CDS |
| TCAAAATTCTCATCAGGAAG+AGG | 0.530679 | 4.4:-65955090 | MS.gene54904:CDS |
| GAGGTGACTGGCGTAGTTGA+AGG | 0.532601 | 4.4:-65954375 | MS.gene54904:CDS |
| TGGTTATAAATTTGGGAGCA+CGG | 0.533503 | 4.4:-65956129 | MS.gene54904:CDS |
| CTTCCAAAGAGATCAAGATC+TGG | 0.538529 | 4.4:-65956065 | MS.gene54904:CDS |
| ACAGCAACAATTTCCGGCGG+CGG | 0.541618 | 4.4:+65962523 | None:intergenic |
| CACTATGTCCTTCAAAACTA+CGG | 0.541662 | 4.4:+65956437 | None:intergenic |
| AAGTAAGTATCTTGGAACTC+AGG | 0.543351 | 4.4:-65954317 | MS.gene54904:CDS |
| GCATCCAATGTCCCTGGGAA+TGG | 0.543385 | 4.4:-65959983 | MS.gene54904:CDS |
| GACTCTGTGTCATTCATGAC+GGG | 0.544192 | 4.4:-65956475 | MS.gene54904:CDS |
| ACCGGTACCTTCAGACAGAC+AGG | 0.544303 | 4.4:+65959332 | None:intergenic |
| TTGAATTTAAATCTCAGTGA+AGG | 0.545895 | 4.4:+65955131 | None:intergenic |
| TAGTCCATTCCCAGGGACAT+TGG | 0.546556 | 4.4:+65959979 | None:intergenic |
| GGTAGAGGCAATATGTTGGA+TGG | 0.546772 | 4.4:-65955359 | MS.gene54904:CDS |
| TCAAGTTGCGGTGCCGAAAG+TGG | 0.549626 | 4.4:-65962554 | MS.gene54904:CDS |
| GCTGGAGATATTGATGGTAA+AGG | 0.550993 | 4.4:-65955623 | MS.gene54904:intron |
| ACCAGCTGCAGCCCTCAAGC+TGG | 0.551122 | 4.4:+65956687 | None:intergenic |
| TGATGGTCAGTGATGAAGAA+AGG | 0.551814 | 4.4:-65956255 | MS.gene54904:CDS |
| ATCACCAATTTCAAGTGGAT+GGG | 0.551981 | 4.4:-65956918 | MS.gene54904:CDS |
| ATGATGTGAGATCCCTCTAA+AGG | 0.552018 | 4.4:+65955323 | None:intergenic |
| CATGGAATGATCAACCAAGT+TGG | 0.552171 | 4.4:-65955281 | MS.gene54904:CDS |
| AAATTGGGAAGTGATGCAAT+TGG | 0.556017 | 4.4:-65954885 | MS.gene54904:CDS |
| CTGTGATCATTGCCAACGCT+GGG | 0.558570 | 4.4:-65958819 | MS.gene54904:CDS |
| GGTGATTCACGGAAGGAAGA+TGG | 0.559126 | 4.4:-65962586 | MS.gene54904:CDS |
| GTGGAAGATTGTTTGTGAAA+GGG | 0.560028 | 4.4:-65959364 | MS.gene54904:CDS |
| CTCTGGTAGAGGCAATATGT+TGG | 0.560045 | 4.4:-65955363 | MS.gene54904:CDS |
| TGTGGAAGATTGTTTGTGAA+AGG | 0.560702 | 4.4:-65959365 | MS.gene54904:CDS |
| CCTCACAAATTCGGCAAGCA+CGG | 0.563825 | 4.4:+65961066 | None:intergenic |
| AATGTGAAGACATGTGATTA+TGG | 0.564014 | 4.4:+65955174 | None:intergenic |
| CGGAACGAAGAACGCGACGA+AGG | 0.567316 | 4.4:-65962647 | MS.gene54904:CDS |
| GAGGAGAAGACCACTATCAA+GGG | 0.567556 | 4.4:-65955071 | MS.gene54904:CDS |
| GCTTGAATCTGGCGATGTTG+TGG | 0.569400 | 4.4:-65962377 | MS.gene54904:intron |
| AGAGGGATCTCACATCATGC+GGG | 0.569444 | 4.4:-65955318 | MS.gene54904:CDS |
| ACGTTGCACCTAATCCAACT+TGG | 0.570960 | 4.4:+65955267 | None:intergenic |
| ATTCTGACGATGAGGATAGC+GGG | 0.573927 | 4.4:-65956627 | MS.gene54904:CDS |
| GGATTAGGTGCAACGTCAAG+AGG | 0.575651 | 4.4:-65955260 | MS.gene54904:CDS |
| TATACATGTCCTACTTGTCG+TGG | 0.579175 | 4.4:-65956886 | MS.gene54904:CDS |
| ACAGGGGCAATCCAATGTAA+AGG | 0.579424 | 4.4:-65961324 | MS.gene54904:CDS |
| AAATTCAACCCATTTGACAA+AGG | 0.582014 | 4.4:-65955681 | MS.gene54904:CDS |
| AAGATATCACCAATTTCAAG+TGG | 0.584262 | 4.4:-65956923 | MS.gene54904:CDS |
| GTTGCTGTTAGCGGTGGTGG+TGG | 0.584403 | 4.4:-65962508 | MS.gene54904:CDS |
| ACTGGCAATGTACCCAGCGT+TGG | 0.587950 | 4.4:+65958807 | None:intergenic |
| TGGTGGAACGATTCAAGTTG+CGG | 0.592724 | 4.4:-65962566 | MS.gene54904:CDS |
| ATACATGTCCTACTTGTCGT+GGG | 0.593049 | 4.4:-65956885 | MS.gene54904:CDS |
| CTGACACTTAGTCCATTCCC+AGG | 0.595072 | 4.4:+65959971 | None:intergenic |
| TAGAGGCAATATGTTGGATG+GGG | 0.598934 | 4.4:-65955357 | MS.gene54904:CDS |
| GGACTCTGTGTCATTCATGA+CGG | 0.600709 | 4.4:-65956476 | MS.gene54904:CDS |
| TAATGCAGAATGTTAGTACT+GGG | 0.600736 | 4.4:-65960045 | MS.gene54904:intron |
| GAAACGTAAGTTTGTTGATG+AGG | 0.601471 | 4.4:-65956278 | MS.gene54904:CDS |
| GAATATAAATCATGAGAACA+TGG | 0.604777 | 4.4:-65954928 | MS.gene54904:CDS |
| GCTTCATCTAGGCTTGCAGA+AGG | 0.606594 | 4.4:-65960220 | MS.gene54904:intron |
| GTTGCGCATCCAATGTCCCT+GGG | 0.607039 | 4.4:-65959988 | MS.gene54904:CDS |
| ATCTTGGAACTCAGGAAACA+GGG | 0.607109 | 4.4:-65954309 | MS.gene54904:CDS |
| CAATGATCACAGCAAACCAT+CGG | 0.607867 | 4.4:+65958830 | None:intergenic |
| TTACTGTCCTGTCTGTCTGA+AGG | 0.612168 | 4.4:-65959339 | MS.gene54904:intron |
| AGGCACTAACCAAGAATCAT+CGG | 0.613042 | 4.4:+65954836 | None:intergenic |
| AATCTTAATGGAGACGAACA+GGG | 0.615659 | 4.4:-65961341 | MS.gene54904:CDS |
| CTTCCAGGTCAAGAATCTTG+AGG | 0.616861 | 4.4:-65956764 | MS.gene54904:intron |
| GAAATTGTTGCTGTTAGCGG+TGG | 0.617826 | 4.4:-65962514 | MS.gene54904:CDS |
| TAAGTTTGTTGATGAGGTGA+TGG | 0.619624 | 4.4:-65956272 | MS.gene54904:CDS |
| AGTGAAGAGAGTGGAAAACG+TGG | 0.619742 | 4.4:-65956184 | MS.gene54904:CDS |
| TAGAGGGATCTCACATCATG+CGG | 0.619845 | 4.4:-65955319 | MS.gene54904:CDS |
| TGCAATCGTGTCGAGAACGA+AGG | 0.621522 | 4.4:-65961287 | MS.gene54904:CDS |
| ATGTTCTGCAAAAGATGTGA+TGG | 0.623740 | 4.4:-65960176 | MS.gene54904:CDS |
| TTGCTGCTGAGGAGTATGCT+AGG | 0.624374 | 4.4:-65962402 | MS.gene54904:CDS |
| TAACATTCCCCACGACAAGT+AGG | 0.631142 | 4.4:+65956877 | None:intergenic |
| AGATTCAGAGTCAACACCGA+TGG | 0.632016 | 4.4:-65958846 | MS.gene54904:CDS |
| TATTCTGACGATGAGGATAG+CGG | 0.633802 | 4.4:-65956628 | MS.gene54904:CDS |
| CTTGTCCTGTCAATCAGACA+GGG | 0.634402 | 4.4:-65956306 | MS.gene54904:CDS |
| CCGTGCTTGCCGAATTTGTG+AGG | 0.635864 | 4.4:-65961066 | MS.gene54904:intron |
| TTCACCATATTCTGACGATG+AGG | 0.636007 | 4.4:-65956635 | MS.gene54904:CDS |
| TATTTGGCGAAGCAGTCAGA+AGG | 0.638353 | 4.4:-65955227 | MS.gene54904:CDS |
| TTTGCATTAGATAGACACAA+TGG | 0.643861 | 4.4:-65955650 | MS.gene54904:CDS |
| TCATTGTTTAATGACTCTGA+AGG | 0.648459 | 4.4:-65955005 | MS.gene54904:CDS |
| CAACATATTGCCTCTACCAG+AGG | 0.652907 | 4.4:+65955364 | None:intergenic |
| GAGGTTGCAGACAGTAACAA+TGG | 0.654117 | 4.4:+65960147 | None:intergenic |
| TTCGTTCCGTTCAGAGAACG+CGG | 0.654302 | 4.4:+65962661 | None:intergenic |
| ATCTTAATGGAGACGAACAG+GGG | 0.656304 | 4.4:-65961340 | MS.gene54904:CDS |
| TGACACTTAGTCCATTCCCA+GGG | 0.656715 | 4.4:+65959972 | None:intergenic |
| AGAGGCAATATGTTGGATGG+GGG | 0.663800 | 4.4:-65955356 | MS.gene54904:CDS |
| CTAACCTAATATCATCACAC+TGG | 0.667427 | 4.4:+65958789 | None:intergenic |
| TCATTGATTAATGACTCTGA+AGG | 0.668914 | 4.4:-65954972 | MS.gene54904:CDS |
| GATTCACGGAAGGAAGATGG+TGG | 0.670231 | 4.4:-65962583 | MS.gene54904:CDS |
| TACACGTGCTGTGATGCATG+TGG | 0.671444 | 4.4:-65959383 | MS.gene54904:CDS |
| GAGGGATCTCACATCATGCG+GGG | 0.683546 | 4.4:-65955317 | MS.gene54904:CDS |
| AAGTTGAATTCAGAAACACT+TGG | 0.688131 | 4.4:+65955389 | None:intergenic |
| CTGCTGAGGAGTATGCTAGG+AGG | 0.692798 | 4.4:-65962399 | MS.gene54904:CDS |
| ACAGACTCTACCTTATGAGG+AGG | 0.696642 | 4.4:+65960128 | None:intergenic |
| AAGCTTGCATTATCAGACAG+CGG | 0.699554 | 4.4:+65956085 | None:intergenic |
| TACATGTCCTACTTGTCGTG+GGG | 0.701115 | 4.4:-65956884 | MS.gene54904:CDS |
| AGACCACTATCAAGGGCCAG+AGG | 0.706908 | 4.4:-65955064 | MS.gene54904:CDS |
| CTAACAGCAACAATTTCCGG+CGG | 0.727273 | 4.4:+65962520 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 65954266 | 65962881 | 65954266 | ID=MS.gene54904 |
| chr4.4 | mRNA | 65954266 | 65962881 | 65954266 | ID=MS.gene54904.t1;Parent=MS.gene54904 |
| chr4.4 | exon | 65962850 | 65962881 | 65962850 | ID=MS.gene54904.t1.exon1;Parent=MS.gene54904.t1 |
| chr4.4 | CDS | 65962850 | 65962881 | 65962850 | ID=cds.MS.gene54904.t1;Parent=MS.gene54904.t1 |
| chr4.4 | exon | 65962378 | 65962714 | 65962378 | ID=MS.gene54904.t1.exon2;Parent=MS.gene54904.t1 |
| chr4.4 | CDS | 65962378 | 65962714 | 65962378 | ID=cds.MS.gene54904.t1;Parent=MS.gene54904.t1 |
| chr4.4 | exon | 65961198 | 65961375 | 65961198 | ID=MS.gene54904.t1.exon3;Parent=MS.gene54904.t1 |
| chr4.4 | CDS | 65961198 | 65961375 | 65961198 | ID=cds.MS.gene54904.t1;Parent=MS.gene54904.t1 |
| chr4.4 | exon | 65961067 | 65961116 | 65961067 | ID=MS.gene54904.t1.exon4;Parent=MS.gene54904.t1 |
| chr4.4 | CDS | 65961067 | 65961116 | 65961067 | ID=cds.MS.gene54904.t1;Parent=MS.gene54904.t1 |
| chr4.4 | exon | 65960139 | 65960231 | 65960139 | ID=MS.gene54904.t1.exon5;Parent=MS.gene54904.t1 |
| chr4.4 | CDS | 65960139 | 65960231 | 65960139 | ID=cds.MS.gene54904.t1;Parent=MS.gene54904.t1 |
| chr4.4 | exon | 65959971 | 65960059 | 65959971 | ID=MS.gene54904.t1.exon6;Parent=MS.gene54904.t1 |
| chr4.4 | CDS | 65959971 | 65960059 | 65959971 | ID=cds.MS.gene54904.t1;Parent=MS.gene54904.t1 |
| chr4.4 | exon | 65959340 | 65959418 | 65959340 | ID=MS.gene54904.t1.exon7;Parent=MS.gene54904.t1 |
| chr4.4 | CDS | 65959340 | 65959418 | 65959340 | ID=cds.MS.gene54904.t1;Parent=MS.gene54904.t1 |
| chr4.4 | exon | 65958794 | 65958876 | 65958794 | ID=MS.gene54904.t1.exon8;Parent=MS.gene54904.t1 |
| chr4.4 | CDS | 65958794 | 65958876 | 65958794 | ID=cds.MS.gene54904.t1;Parent=MS.gene54904.t1 |
| chr4.4 | exon | 65956873 | 65956951 | 65956873 | ID=MS.gene54904.t1.exon9;Parent=MS.gene54904.t1 |
| chr4.4 | CDS | 65956873 | 65956951 | 65956873 | ID=cds.MS.gene54904.t1;Parent=MS.gene54904.t1 |
| chr4.4 | exon | 65956053 | 65956779 | 65956053 | ID=MS.gene54904.t1.exon10;Parent=MS.gene54904.t1 |
| chr4.4 | CDS | 65956053 | 65956779 | 65956053 | ID=cds.MS.gene54904.t1;Parent=MS.gene54904.t1 |
| chr4.4 | exon | 65955624 | 65955710 | 65955624 | ID=MS.gene54904.t1.exon11;Parent=MS.gene54904.t1 |
| chr4.4 | CDS | 65955624 | 65955710 | 65955624 | ID=cds.MS.gene54904.t1;Parent=MS.gene54904.t1 |
| chr4.4 | exon | 65954846 | 65955494 | 65954846 | ID=MS.gene54904.t1.exon12;Parent=MS.gene54904.t1 |
| chr4.4 | CDS | 65954846 | 65955494 | 65954846 | ID=cds.MS.gene54904.t1;Parent=MS.gene54904.t1 |
| chr4.4 | exon | 65954266 | 65954407 | 65954266 | ID=MS.gene54904.t1.exon13;Parent=MS.gene54904.t1 |
| chr4.4 | CDS | 65954266 | 65954407 | 65954266 | ID=cds.MS.gene54904.t1;Parent=MS.gene54904.t1 |
| Gene Sequence |
| Protein sequence |
