AlfalfaGEDB | MS.gene61739

M. sativa cultivar XinJiangDaYe / MS.gene61739

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0008270 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043167 GO:0043169 GO:0043565 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00320.30

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61739.t1	GAU37470.1	88.7	142	14	2	1	141	1	141	5.20E-60	240.4

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61739.t1	Q8LG10	56.0	141	43	6	7	141	22	149	1.0e-27	124.4

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61739.t1	A0A2Z6NLR0	88.7	142	14	2	1	141	1	141	3.8e-60	240.4

TFs/TRs:

Gene ID	Type	Classification
MS.gene61739.t1	TF	C2C2-GATA

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene61739	0.839055	1.99E-57	-1.69E-46
MS.gene04918	MS.gene61739	0.805657	1.20E-49	-1.69E-46
MS.gene049254	MS.gene61739	0.803191	3.92E-49	-1.69E-46
MS.gene049350	MS.gene61739	0.852528	4.35E-61	-1.69E-46
MS.gene049441	MS.gene61739	0.84229	2.83E-58	-1.69E-46
MS.gene049711	MS.gene61739	0.830785	2.41E-55	-1.69E-46
MS.gene049807	MS.gene61739	0.836692	8.06E-57	-1.69E-46
MS.gene049821	MS.gene61739	0.814329	1.63E-51	-1.69E-46
MS.gene049824	MS.gene61739	0.813884	2.04E-51	-1.69E-46
MS.gene049825	MS.gene61739	0.80151	8.70E-49	-1.69E-46
MS.gene050838	MS.gene61739	0.827783	1.29E-54	-1.69E-46
MS.gene050901	MS.gene61739	0.830555	2.75E-55	-1.69E-46
MS.gene051234	MS.gene61739	0.830814	2.38E-55	-1.69E-46
MS.gene051247	MS.gene61739	0.830928	2.23E-55	-1.69E-46
MS.gene051343	MS.gene61739	0.805033	1.62E-49	-1.69E-46
MS.gene051676	MS.gene61739	0.833182	6.18E-56	-1.69E-46
MS.gene051700	MS.gene61739	0.872768	2.47E-67	-1.69E-46
MS.gene051719	MS.gene61739	0.821244	4.48E-53	-1.69E-46
MS.gene051720	MS.gene61739	0.836423	9.44E-57	-1.69E-46
MS.gene051744	MS.gene61739	0.835619	1.51E-56	-1.69E-46
MS.gene051791	MS.gene61739	0.803002	4.29E-49	-1.69E-46
MS.gene05188	MS.gene61739	0.859066	5.35E-63	-1.69E-46
MS.gene051902	MS.gene61739	0.806948	6.42E-50	-1.69E-46
MS.gene051975	MS.gene61739	0.858194	9.74E-63	-1.69E-46
MS.gene052133	MS.gene61739	0.801014	1.10E-48	-1.69E-46
MS.gene052463	MS.gene61739	0.813509	2.47E-51	-1.69E-46
MS.gene052533	MS.gene61739	0.807451	5.02E-50	-1.69E-46
MS.gene052584	MS.gene61739	0.809643	1.71E-50	-1.69E-46
MS.gene052609	MS.gene61739	0.808722	2.69E-50	-1.69E-46
MS.gene052717	MS.gene61739	0.81556	8.68E-52	-1.69E-46
MS.gene052947	MS.gene61739	0.828088	1.09E-54	-1.69E-46
MS.gene053084	MS.gene61739	0.804029	2.63E-49	-1.69E-46
MS.gene053122	MS.gene61739	0.862681	4.27E-64	-1.69E-46
MS.gene053144	MS.gene61739	0.81845	1.95E-52	-1.69E-46
MS.gene053226	MS.gene61739	0.853925	1.73E-61	-1.69E-46
MS.gene053581	MS.gene61739	0.821738	3.44E-53	-1.69E-46
MS.gene054142	MS.gene61739	0.812937	3.30E-51	-1.69E-46
MS.gene054584	MS.gene61739	0.820467	6.76E-53	-1.69E-46
MS.gene05458	MS.gene61739	0.834357	3.14E-56	-1.69E-46
MS.gene055313	MS.gene61739	0.844011	9.84E-59	-1.69E-46
MS.gene055314	MS.gene61739	0.804683	1.92E-49	-1.69E-46
MS.gene055465	MS.gene61739	0.825152	5.48E-54	-1.69E-46
MS.gene055466	MS.gene61739	0.824072	9.84E-54	-1.69E-46
MS.gene055468	MS.gene61739	0.829642	4.59E-55	-1.69E-46
MS.gene055469	MS.gene61739	0.820313	7.33E-53	-1.69E-46
MS.gene055513	MS.gene61739	0.87872	2.23E-69	-1.69E-46
MS.gene055537	MS.gene61739	0.830434	2.94E-55	-1.69E-46
MS.gene055580	MS.gene61739	-0.837899	3.96E-57	-1.69E-46
MS.gene056043	MS.gene61739	-0.829918	3.93E-55	-1.69E-46
MS.gene056050	MS.gene61739	0.809293	2.03E-50	-1.69E-46
MS.gene05608	MS.gene61739	0.805938	1.05E-49	-1.69E-46
MS.gene056215	MS.gene61739	0.850069	2.15E-60	-1.69E-46
MS.gene056308	MS.gene61739	0.840344	9.20E-58	-1.69E-46
MS.gene056390	MS.gene61739	0.805004	1.65E-49	-1.69E-46
MS.gene056403	MS.gene61739	0.82133	4.27E-53	-1.69E-46
MS.gene056595	MS.gene61739	0.809293	2.03E-50	-1.69E-46
MS.gene056605	MS.gene61739	0.800968	1.12E-48	-1.69E-46
MS.gene05689	MS.gene61739	0.843398	1.44E-58	-1.69E-46
MS.gene056986	MS.gene61739	0.834309	3.23E-56	-1.69E-46
MS.gene057102	MS.gene61739	0.856378	3.35E-62	-1.69E-46
MS.gene058210	MS.gene61739	0.800299	1.54E-48	-1.69E-46
MS.gene058492	MS.gene61739	0.800314	1.53E-48	-1.69E-46
MS.gene058668	MS.gene61739	0.856946	2.28E-62	-1.69E-46
MS.gene058852	MS.gene61739	0.802391	5.74E-49	-1.69E-46
MS.gene05894	MS.gene61739	0.805988	1.02E-49	-1.69E-46
MS.gene059146	MS.gene61739	0.807763	4.31E-50	-1.69E-46
MS.gene059171	MS.gene61739	0.805562	1.26E-49	-1.69E-46
MS.gene059227	MS.gene61739	0.849902	2.40E-60	-1.69E-46
MS.gene059625	MS.gene61739	0.841382	4.92E-58	-1.69E-46
MS.gene059774	MS.gene61739	0.801628	8.23E-49	-1.69E-46
MS.gene059778	MS.gene61739	0.825151	5.48E-54	-1.69E-46
MS.gene05985	MS.gene61739	-0.847433	1.16E-59	-1.69E-46
MS.gene059901	MS.gene61739	-0.804192	2.43E-49	-1.69E-46
MS.gene059935	MS.gene61739	0.817603	3.03E-52	-1.69E-46
MS.gene059965	MS.gene61739	0.802561	5.29E-49	-1.69E-46
MS.gene06001	MS.gene61739	0.815412	9.37E-52	-1.69E-46
MS.gene06011	MS.gene61739	0.808003	3.83E-50	-1.69E-46
MS.gene060365	MS.gene61739	0.845676	3.50E-59	-1.69E-46
MS.gene060429	MS.gene61739	0.834536	2.83E-56	-1.69E-46
MS.gene060519	MS.gene61739	0.808375	3.19E-50	-1.69E-46
MS.gene060587	MS.gene61739	0.806388	8.43E-50	-1.69E-46
MS.gene060763	MS.gene61739	0.809087	2.25E-50	-1.69E-46
MS.gene061100	MS.gene61739	0.848365	6.42E-60	-1.69E-46
MS.gene061188	MS.gene61739	0.837344	5.49E-57	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61739.t1	MTR_4g121110	97.222	144	1	1	1	141	1	144	2.86e-98	278
MS.gene61739.t1	MTR_7g112330	50.877	114	50	3	29	141	21	129	1.30e-30	107
MS.gene61739.t1	MTR_1g016170	63.265	49	18	0	26	74	183	231	5.50e-17	75.9
MS.gene61739.t1	MTR_5g020230	58.000	50	18	1	20	66	109	158	4.10e-13	64.3
MS.gene61739.t1	MTR_4g126350	68.421	38	12	0	22	59	178	215	5.55e-13	64.7
MS.gene61739.t1	MTR_2g038720	76.667	30	7	0	30	59	164	193	4.23e-12	62.0
MS.gene61739.t1	MTR_8g077510	64.865	37	13	0	30	66	125	161	5.03e-12	61.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61739.t1	AT5G49300	54.362	149	49	6	2	141	1	139	1.73e-41	135
MS.gene61739.t1	AT3G06740	56.028	141	43	6	7	141	22	149	3.57e-40	132
MS.gene61739.t1	AT3G16870	42.675	157	43	5	27	141	39	190	1.55e-28	103
MS.gene61739.t1	AT4G16141	45.062	162	36	7	29	137	36	197	1.17e-26	99.0
MS.gene61739.t1	AT5G26930	67.442	43	13	1	30	71	26	68	1.81e-16	70.9
MS.gene61739.t1	AT5G56860	70.732	41	12	0	23	63	223	263	4.28e-15	71.2
MS.gene61739.t1	AT2G18380	50.000	66	29	1	30	91	92	157	1.18e-13	65.5
MS.gene61739.t1	AT4G36620	46.970	66	23	1	30	95	75	128	3.82e-13	64.3
MS.gene61739.t1	AT4G26150	77.419	31	7	0	30	60	199	229	5.16e-13	65.1
MS.gene61739.t1	AT3G50870	67.568	37	12	0	30	66	152	188	2.83e-12	62.8

Find 0 sgRNAs with CRISPR-Local

Find 41 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTTGTTCATTTTTCATTTTC+AGG	-	32473:15623-15642	MS.gene61739:CDS	20.0%
!	AAGCAGAGATTATTGAATTT+AGG	-	32473:16006-16025	MS.gene61739:intron	25.0%
!	AGCAGAGATTATTGAATTTA+GGG	-	32473:16007-16026	MS.gene61739:intron	25.0%
!	GATTAGTGATTAATTACCTT+TGG	+	32473:15771-15790	MS.gene61739:intergenic	25.0%
!!	ATTGTTGTTATCTGATGAAA+CGG	+	32473:15682-15701	MS.gene61739:intergenic	25.0%
	TGTTTATGAATCGATCACAT+TGG	-	32473:16037-16056	MS.gene61739:intron	30.0%
	TTGTTGATGTCTCTTTCTTA+TGG	-	32473:16093-16112	MS.gene61739:intron	30.0%
!!!	TTTCATTTTCAGGTATCAGA+AGG	-	32473:15633-15652	MS.gene61739:CDS	30.0%
	AACGAAGAAGGAACAAGAAA+GGG	-	32473:15931-15950	MS.gene61739:CDS	35.0%
	AAGAAGAAGAGAGCGATATT+AGG	-	32473:15892-15911	MS.gene61739:CDS	35.0%
	AGAAGAAGAGAGCGATATTA+GGG	-	32473:15893-15912	MS.gene61739:CDS	35.0%
	CGATCACATTGGAAGAAATT+GGG	-	32473:16048-16067	MS.gene61739:intron	35.0%
	TCGATCACATTGGAAGAAAT+TGG	-	32473:16047-16066	MS.gene61739:intron	35.0%
	TTGAAGTGAAGTGTGTGATT+AGG	+	32473:15562-15581	MS.gene61739:intergenic	35.0%
	AAGGGGAAAAAGAGTAACAG+TGG	-	32473:15949-15968	MS.gene61739:CDS	40.0%
	ACGAAGAAGGAACAAGAAAG+GGG	-	32473:15932-15951	MS.gene61739:CDS	40.0%
	AGCAAAGGAAACAACGAAGA+AGG	-	32473:15919-15938	MS.gene61739:CDS	40.0%
	CAACGAAGAAGGAACAAGAA+AGG	-	32473:15930-15949	MS.gene61739:CDS	40.0%
	GAACTTCCAAAACTCCTCTA+TGG	-	32473:15727-15746	MS.gene61739:CDS	40.0%
	GCGATATTAGGGATAAGCAA+AGG	-	32473:15904-15923	MS.gene61739:CDS	40.0%
	GTTGTTATCTGATGAAACGG+CGG	+	32473:15679-15698	MS.gene61739:intergenic	40.0%
	TTAATTACCTTTGGTCCTGC+AGG	+	32473:15762-15781	MS.gene61739:intergenic	40.0%
!	CAATCAGCACAGGTTTTCTT+TGG	+	32473:15705-15724	MS.gene61739:intergenic	40.0%
!!	AAGAAAACCTGTGCTGATTG+CGG	-	32473:15705-15724	MS.gene61739:CDS	40.0%
	AAAAAGAGTAACAGTGGCGG+TGG	-	32473:15955-15974	MS.gene61739:CDS	45.0%
	GGGAAAAAGAGTAACAGTGG+CGG	-	32473:15952-15971	MS.gene61739:CDS	45.0%
	GGTGGTTGATCACAGTGATA+AGG	-	32473:15506-15525	MS.gene61739:CDS	45.0%
	AGTCACTGTGCAATGCTTGC+GGG	-	32473:15857-15876	MS.gene61739:intron	50.0%
	CAGTCACTGTGCAATGCTTG+CGG	-	32473:15856-15875	MS.gene61739:intron	50.0%
	TCCAAAACTCCTCTATGGCG+CGG	-	32473:15732-15751	MS.gene61739:CDS	50.0%
	AAAACTCCTCTATGGCGCGG+TGG	-	32473:15735-15754	MS.gene61739:CDS	55.0%
	AGTGGCGGTGGAAGCAAAGT+TGG	-	32473:15967-15986	MS.gene61739:CDS	55.0%
	CTGATGAAACGGCGGCGTTA+GGG	+	32473:15671-15690	MS.gene61739:intergenic	55.0%
	GGAAGTTCCGCAATCAGCAC+AGG	+	32473:15715-15734	MS.gene61739:intergenic	55.0%
	TCTGATGAAACGGCGGCGTT+AGG	+	32473:15672-15691	MS.gene61739:intergenic	55.0%
	TGTGCAATGCTTGCGGGATC+AGG	-	32473:15863-15882	MS.gene61739:CDS	55.0%
!	ACCGCGCCATAGAGGAGTTT+TGG	+	32473:15736-15755	MS.gene61739:intergenic	55.0%
	ATGCTTGCGGGATCAGGAGC+AGG	-	32473:15869-15888	MS.gene61739:CDS	60.0%
	CGGTGGTCCTGCAGGACCAA+AGG	-	32473:15752-15771	MS.gene61739:CDS	65.0%
	CTATGGCGCGGTGGTCCTGC+AGG	-	32473:15744-15763	MS.gene61739:CDS	70.0%
	GCAGGACCACCGCGCCATAG+AGG	+	32473:15744-15763	MS.gene61739:intergenic	70.0%

Chromosome	Type	Strat	End	Strand	Name
32473	gene	15504	16131	15504	ID=MS.gene61739
32473	mRNA	15504	16131	15504	ID=MS.gene61739.t1;Parent=MS.gene61739
32473	exon	16108	16131	16108	ID=MS.gene61739.t1.exon1;Parent=MS.gene61739.t1
32473	CDS	16108	16131	16108	ID=cds.MS.gene61739.t1;Parent=MS.gene61739.t1
32473	exon	15862	15990	15862	ID=MS.gene61739.t1.exon2;Parent=MS.gene61739.t1
32473	CDS	15862	15990	15862	ID=cds.MS.gene61739.t1;Parent=MS.gene61739.t1
32473	exon	15504	15776	15504	ID=MS.gene61739.t1.exon3;Parent=MS.gene61739.t1
32473	CDS	15504	15776	15504	ID=cds.MS.gene61739.t1;Parent=MS.gene61739.t1

Gene Sequence

>MS.gene61739

ATGGTGGTTGATCACAGTGATAAGGTAAGTGTTATTTGTTGATCAAATTAATTAACCTAATCACACACTTCACTTCAATCATTCATGATTTAATAGTTCAAATCACTAATCAATCTTGTTTTGTTCATTTTTCATTTTCAGGTATCAGAAGGTGAAGATTCAAACCCTAACGCCGCCGTTTCATCAGATAACAACAATCCAAAGAAAACCTGTGCTGATTGCGGAACTTCCAAAACTCCTCTATGGCGCGGTGGTCCTGCAGGACCAAAGGTAATTAATCACTAATCAATCGATTTGATGATTGATCACACTAATTTTGTTGTTGATCTGATCTAATATGTGATTAATTATGCAGTCACTGTGCAATGCTTGCGGGATCAGGAGCAGGAAGAAGAAGAGAGCGATATTAGGGATAAGCAAAGGAAACAACGAAGAAGGAACAAGAAAGGGGAAAAAGAGTAACAGTGGCGGTGGAAGCAAAGTTGGTGATAATTTGAACATGAAGCAGAGATTATTGAATTTAGGGAAAGAAGTGTTTATGAATCGATCACATTGGAAGAAATTGGGAGAAGATGAACAAGCTGCTGTGTTGTTGATGTCTCTTTCTTATGGATCTGTTTATGCCTAA

Protein sequence

>MS.gene61739.t1

MVVDHSDKVSEGEDSNPNAAVSSDNNNPKKTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKKRAILGISKGNNEEGTRKGKKSNSGGGSKVGDNLNMKQRLLNLGKEVFMNRSHWKKLGEDEQAAVLLMSLSYGSVYA