Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70577.t1 | XP_013461068.1 | 97 | 165 | 5 | 0 | 1 | 165 | 1 | 165 | 2.00E-82 | 315.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70577.t1 | Q28GF5 | 41.3 | 121 | 70 | 1 | 46 | 165 | 16 | 136 | 3.8e-18 | 92.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70577.t1 | I3T390 | 97.0 | 165 | 5 | 0 | 1 | 165 | 1 | 165 | 1.4e-82 | 315.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049129 | MS.gene70577 | -0.814923 | 1.20E-51 | -1.69E-46 |
| MS.gene04918 | MS.gene70577 | 0.815525 | 8.84E-52 | -1.69E-46 |
| MS.gene04919 | MS.gene70577 | 0.805904 | 1.07E-49 | -1.69E-46 |
| MS.gene04920 | MS.gene70577 | 0.81114 | 8.13E-51 | -1.69E-46 |
| MS.gene049283 | MS.gene70577 | 0.803539 | 3.32E-49 | -1.69E-46 |
| MS.gene049350 | MS.gene70577 | 0.818676 | 1.73E-52 | -1.69E-46 |
| MS.gene049368 | MS.gene70577 | 0.819531 | 1.11E-52 | -1.69E-46 |
| MS.gene049411 | MS.gene70577 | 0.846334 | 2.32E-59 | -1.69E-46 |
| MS.gene049580 | MS.gene70577 | 0.806704 | 7.23E-50 | -1.69E-46 |
| MS.gene050414 | MS.gene70577 | 0.818354 | 2.05E-52 | -1.69E-46 |
| MS.gene050437 | MS.gene70577 | 0.800983 | 1.12E-48 | -1.69E-46 |
| MS.gene050689 | MS.gene70577 | 0.80706 | 6.08E-50 | -1.69E-46 |
| MS.gene050752 | MS.gene70577 | 0.867314 | 1.50E-65 | -1.69E-46 |
| MS.gene050838 | MS.gene70577 | 0.876309 | 1.55E-68 | -1.69E-46 |
| MS.gene050945 | MS.gene70577 | 0.814087 | 1.84E-51 | -1.69E-46 |
| MS.gene050955 | MS.gene70577 | 0.840756 | 7.18E-58 | -1.69E-46 |
| MS.gene051003 | MS.gene70577 | 0.877591 | 5.56E-69 | -1.69E-46 |
| MS.gene051043 | MS.gene70577 | 0.833805 | 4.32E-56 | -1.69E-46 |
| MS.gene051233 | MS.gene70577 | 0.833887 | 4.12E-56 | -1.69E-46 |
| MS.gene051234 | MS.gene70577 | 0.885547 | 7.40E-72 | -1.69E-46 |
| MS.gene051343 | MS.gene70577 | 0.843614 | 1.26E-58 | -1.69E-46 |
| MS.gene051642 | MS.gene70577 | 0.809212 | 2.12E-50 | -1.69E-46 |
| MS.gene051676 | MS.gene70577 | 0.819796 | 9.62E-53 | -1.69E-46 |
| MS.gene051746 | MS.gene70577 | 0.801362 | 9.33E-49 | -1.69E-46 |
| MS.gene051748 | MS.gene70577 | 0.811002 | 8.71E-51 | -1.69E-46 |
| MS.gene05188 | MS.gene70577 | 0.817019 | 4.10E-52 | -1.69E-46 |
| MS.gene051902 | MS.gene70577 | 0.860686 | 1.74E-63 | -1.69E-46 |
| MS.gene051903 | MS.gene70577 | 0.811754 | 5.98E-51 | -1.69E-46 |
| MS.gene051975 | MS.gene70577 | 0.811352 | 7.31E-51 | -1.69E-46 |
| MS.gene052072 | MS.gene70577 | 0.860964 | 1.43E-63 | -1.69E-46 |
| MS.gene052296 | MS.gene70577 | 0.867992 | 9.09E-66 | -1.69E-46 |
| MS.gene052307 | MS.gene70577 | 0.809144 | 2.19E-50 | -1.69E-46 |
| MS.gene052335 | MS.gene70577 | 0.802827 | 4.66E-49 | -1.69E-46 |
| MS.gene052342 | MS.gene70577 | 0.820822 | 5.60E-53 | -1.69E-46 |
| MS.gene052434 | MS.gene70577 | 0.810717 | 1.00E-50 | -1.69E-46 |
| MS.gene052818 | MS.gene70577 | -0.811249 | 7.69E-51 | -1.69E-46 |
| MS.gene052947 | MS.gene70577 | 0.847021 | 1.50E-59 | -1.69E-46 |
| MS.gene053058 | MS.gene70577 | 0.818104 | 2.33E-52 | -1.69E-46 |
| MS.gene053564 | MS.gene70577 | 0.812513 | 4.08E-51 | -1.69E-46 |
| MS.gene05364 | MS.gene70577 | 0.804826 | 1.79E-49 | -1.69E-46 |
| MS.gene053786 | MS.gene70577 | 0.819872 | 9.25E-53 | -1.69E-46 |
| MS.gene054004 | MS.gene70577 | 0.83898 | 2.08E-57 | -1.69E-46 |
| MS.gene054403 | MS.gene70577 | 0.869935 | 2.13E-66 | -1.69E-46 |
| MS.gene05469 | MS.gene70577 | 0.814477 | 1.51E-51 | -1.69E-46 |
| MS.gene055311 | MS.gene70577 | 0.801233 | 9.92E-49 | -1.69E-46 |
| MS.gene055424 | MS.gene70577 | 0.803764 | 2.98E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene70577 | 0.829038 | 6.44E-55 | -1.69E-46 |
| MS.gene056075 | MS.gene70577 | 0.804096 | 2.55E-49 | -1.69E-46 |
| MS.gene056181 | MS.gene70577 | 0.834527 | 2.85E-56 | -1.69E-46 |
| MS.gene056578 | MS.gene70577 | 0.816401 | 5.64E-52 | -1.69E-46 |
| MS.gene056752 | MS.gene70577 | 0.81948 | 1.14E-52 | -1.69E-46 |
| MS.gene056787 | MS.gene70577 | 0.802869 | 4.57E-49 | -1.69E-46 |
| MS.gene056986 | MS.gene70577 | 0.808763 | 2.64E-50 | -1.69E-46 |
| MS.gene057094 | MS.gene70577 | 0.806005 | 1.01E-49 | -1.69E-46 |
| MS.gene057102 | MS.gene70577 | 0.821584 | 3.74E-53 | -1.69E-46 |
| MS.gene057234 | MS.gene70577 | 0.811615 | 6.41E-51 | -1.69E-46 |
| MS.gene057705 | MS.gene70577 | 0.811304 | 7.48E-51 | -1.69E-46 |
| MS.gene05781 | MS.gene70577 | 0.840524 | 8.26E-58 | -1.69E-46 |
| MS.gene057890 | MS.gene70577 | -0.840388 | 8.96E-58 | -1.69E-46 |
| MS.gene057999 | MS.gene70577 | 0.817533 | 3.14E-52 | -1.69E-46 |
| MS.gene058054 | MS.gene70577 | 0.800682 | 1.29E-48 | -1.69E-46 |
| MS.gene058074 | MS.gene70577 | 0.819119 | 1.37E-52 | -1.69E-46 |
| MS.gene058149 | MS.gene70577 | 0.801352 | 9.38E-49 | -1.69E-46 |
| MS.gene058261 | MS.gene70577 | 0.831587 | 1.53E-55 | -1.69E-46 |
| MS.gene058654 | MS.gene70577 | 0.808401 | 3.15E-50 | -1.69E-46 |
| MS.gene058852 | MS.gene70577 | 0.821631 | 3.64E-53 | -1.69E-46 |
| MS.gene059146 | MS.gene70577 | 0.85902 | 5.52E-63 | -1.69E-46 |
| MS.gene059171 | MS.gene70577 | 0.832735 | 7.98E-56 | -1.69E-46 |
| MS.gene059227 | MS.gene70577 | 0.838263 | 3.19E-57 | -1.69E-46 |
| MS.gene059778 | MS.gene70577 | 0.80901 | 2.34E-50 | -1.69E-46 |
| MS.gene05985 | MS.gene70577 | -0.801764 | 7.72E-49 | -1.69E-46 |
| MS.gene06011 | MS.gene70577 | 0.851335 | 9.49E-61 | -1.69E-46 |
| MS.gene060763 | MS.gene70577 | 0.847621 | 1.03E-59 | -1.69E-46 |
| MS.gene060937 | MS.gene70577 | 0.810905 | 9.13E-51 | -1.69E-46 |
| MS.gene061100 | MS.gene70577 | 0.862078 | 6.54E-64 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70577.t1 | MTR_3g078663 | 96.970 | 165 | 5 | 0 | 1 | 165 | 1 | 165 | 2.60e-117 | 328 |
| MS.gene70577.t1 | MTR_1g083990 | 84.181 | 177 | 16 | 1 | 1 | 165 | 296 | 472 | 7.53e-95 | 283 |
| MS.gene70577.t1 | MTR_2g069440 | 76.471 | 51 | 6 | 1 | 110 | 160 | 35 | 79 | 2.88e-18 | 81.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70577.t1 | AT1G34350 | 71.166 | 163 | 47 | 0 | 3 | 165 | 1 | 163 | 2.06e-82 | 240 |
| MS.gene70577.t1 | AT1G34350 | 61.170 | 188 | 48 | 1 | 3 | 165 | 1 | 188 | 3.26e-76 | 226 |
Find 27 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGAGACTTAATAGTATTC+TGG | 0.230596 | 3.1:+64457055 | MS.gene70577:CDS |
| CTGAAAGTTGGTATTCTTCC+TGG | 0.303474 | 3.1:-64455992 | None:intergenic |
| GTTTCAGGAACCTTGGCTAC+TGG | 0.315298 | 3.1:+64455924 | MS.gene70577:intron |
| GAGTATTTATGTCAGTTCTT+TGG | 0.365618 | 3.1:+64457126 | MS.gene70577:CDS |
| TTTATGTCAGTTCTTTGGTC+TGG | 0.387486 | 3.1:+64457131 | MS.gene70577:CDS |
| GTTTCTTTCATGCTATTGAT+TGG | 0.393651 | 3.1:+64455164 | MS.gene70577:CDS |
| TGCATTCGCTATGATAATCT+TGG | 0.397468 | 3.1:+64457163 | MS.gene70577:CDS |
| TTTCAGGAACCTTGGCTACT+GGG | 0.415351 | 3.1:+64455925 | MS.gene70577:intron |
| TATGTTACTTGATTGTTAAG+TGG | 0.415739 | 3.1:+64457326 | MS.gene70577:CDS |
| GAGAGACTTAATAGTATTCT+GGG | 0.439923 | 3.1:+64457056 | MS.gene70577:CDS |
| CTTTCATGCTATTGATTGGA+AGG | 0.458422 | 3.1:+64455168 | MS.gene70577:CDS |
| AATGCTACGTACACGTCAAA+AGG | 0.482328 | 3.1:-64456026 | None:intergenic |
| CTTAACAATCAAGTAACATA+AGG | 0.491135 | 3.1:-64457323 | None:intergenic |
| TTCTTGCGATTATTGTCTCC+AGG | 0.499806 | 3.1:+64455974 | MS.gene70577:CDS |
| GAACAAGCACATCTGAAAGT+TGG | 0.517575 | 3.1:-64456004 | None:intergenic |
| CGATGAACTGAAATCTGCTA+TGG | 0.524498 | 3.1:+64455051 | MS.gene70577:CDS |
| AAGGGCTGCTCGTAGTAAGC+AGG | 0.566315 | 3.1:+64457375 | MS.gene70577:CDS |
| CTGAACTAAGACATCGTGCA+AGG | 0.578215 | 3.1:+64457356 | MS.gene70577:CDS |
| GTTAACAATCCCAGTAGCCA+AGG | 0.583367 | 3.1:-64455934 | None:intergenic |
| ATCATAGCGAATGCAAGAAG+AGG | 0.591910 | 3.1:-64457155 | None:intergenic |
| ACTGACATAAATACTCCACT+TGG | 0.602088 | 3.1:-64457119 | None:intergenic |
| TCGCAAGAAGCAATAGAACA+TGG | 0.614827 | 3.1:-64455960 | None:intergenic |
| TGAACTGAAATCTGCTATGG+AGG | 0.630102 | 3.1:+64455054 | MS.gene70577:CDS |
| AGAGACTTAATAGTATTCTG+GGG | 0.632890 | 3.1:+64457057 | MS.gene70577:CDS |
| TGAACTAAGACATCGTGCAA+GGG | 0.640138 | 3.1:+64457357 | MS.gene70577:CDS |
| TTTCAGTTCATCGATCGACA+TGG | 0.652553 | 3.1:-64455041 | None:intergenic |
| GAGACTTAATAGTATTCTGG+GGG | 0.682914 | 3.1:+64457058 | MS.gene70577:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCAATTATCTATTTATTT+TGG | + | chr3.1:64455305-64455324 | MS.gene70577:intron | 10.0% |
| !!! | TTTGATATAATATGATTTTA+TGG | + | chr3.1:64455778-64455797 | MS.gene70577:intron | 10.0% |
| !! | AAGATATAATTGAATTGATA+GGG | + | chr3.1:64456790-64456809 | MS.gene70577:intron | 15.0% |
| !! | ACATTCCATAAAATTAAAAA+AGG | - | chr3.1:64456052-64456071 | None:intergenic | 15.0% |
| !! | TAAGATATAATTGAATTGAT+AGG | + | chr3.1:64456789-64456808 | MS.gene70577:intron | 15.0% |
| !! | TCATATTGAATATTAACTAT+CGG | + | chr3.1:64457233-64457252 | MS.gene70577:intron | 15.0% |
| !!! | AAATTTCTAAAATGAGAAAA+TGG | - | chr3.1:64455848-64455867 | None:intergenic | 15.0% |
| !!! | TAAATATTTCTTTTAGAATG+AGG | + | chr3.1:64456498-64456517 | MS.gene70577:intron | 15.0% |
| !!! | TGTTTTTGAATAAACTATAA+AGG | + | chr3.1:64456072-64456091 | MS.gene70577:intron | 15.0% |
| !!! | TTTTTTTTTGTTTTTGTTTC+AGG | + | chr3.1:64455909-64455928 | MS.gene70577:intron | 15.0% |
| !! | AAAAATAAGTAAATCCAAAC+AGG | - | chr3.1:64455497-64455516 | None:intergenic | 20.0% |
| !! | ATTATGTAGTCTATTCAATT+TGG | + | chr3.1:64456253-64456272 | MS.gene70577:intron | 20.0% |
| !!! | ATTCACTCTTTTGAAAATTT+TGG | - | chr3.1:64456437-64456456 | None:intergenic | 20.0% |
| !!! | GCATTCCTTTTTTAATTTTA+TGG | + | chr3.1:64456044-64456063 | MS.gene70577:intron | 20.0% |
| !!! | TATTCAATTTGGTAACATTA+CGG | + | chr3.1:64456264-64456283 | MS.gene70577:intron | 20.0% |
| !!! | TTCACTCTTTTGAAAATTTT+GGG | - | chr3.1:64456436-64456455 | None:intergenic | 20.0% |
| !!! | TTTATGGATCATATTACTTT+TGG | + | chr3.1:64455794-64455813 | MS.gene70577:intron | 20.0% |
| !!! | TTTTCAAAAGAGTGAATATA+TGG | + | chr3.1:64456440-64456459 | MS.gene70577:intron | 20.0% |
| ! | AATGTAGAAAATTAAAGGCA+GGG | - | chr3.1:64456185-64456204 | None:intergenic | 25.0% |
| ! | AGAAAGTTAAGCTACATTAT+TGG | - | chr3.1:64456999-64457018 | None:intergenic | 25.0% |
| ! | ATAATGTAGCTTAACTTTCT+TGG | + | chr3.1:64456999-64457018 | MS.gene70577:intron | 25.0% |
| ! | CGAAGCAATAAAAAAGAATA+AGG | - | chr3.1:64455255-64455274 | None:intergenic | 25.0% |
| ! | CTTAACAATCAAGTAACATA+AGG | - | chr3.1:64457326-64457345 | None:intergenic | 25.0% |
| ! | GGTGATAAATTGATTATCAT+GGG | - | chr3.1:64456164-64456183 | None:intergenic | 25.0% |
| ! | GTGATAAATTGATTATCATG+GGG | - | chr3.1:64456163-64456182 | None:intergenic | 25.0% |
| ! | TTATGGAGTTTAATTGAATG+TGG | + | chr3.1:64455279-64455298 | MS.gene70577:intron | 25.0% |
| !! | TATGTTACTTGATTGTTAAG+TGG | + | chr3.1:64457326-64457345 | MS.gene70577:CDS | 25.0% |
| !! | TTTTATTGCTTCGTCAATTA+TGG | + | chr3.1:64455262-64455281 | MS.gene70577:intron | 25.0% |
| !!! | TGCCTTTAATTTTCTACATT+GGG | + | chr3.1:64456185-64456204 | MS.gene70577:intron | 25.0% |
| !!! | TTGTATAAGTTGTTTTGCAT+AGG | + | chr3.1:64455587-64455606 | MS.gene70577:intron | 25.0% |
| ACAAATAAATAAGCTTGTCG+AGG | - | chr3.1:64455571-64455590 | None:intergenic | 30.0% | |
| AGAGACTTAATAGTATTCTG+GGG | + | chr3.1:64457057-64457076 | MS.gene70577:CDS | 30.0% | |
| AGATGTAAGCACTAAAAACA+TGG | - | chr3.1:64456768-64456787 | None:intergenic | 30.0% | |
| AGTTGAAGTTTGAATACCTA+TGG | + | chr3.1:64456652-64456671 | MS.gene70577:intron | 30.0% | |
| ATGATAAAAGAGAAGGTTTG+CGG | - | chr3.1:64455220-64455239 | None:intergenic | 30.0% | |
| ATTGAATTGATAGGGAAGAA+TGG | + | chr3.1:64456798-64456817 | MS.gene70577:intron | 30.0% | |
| CAATGTAGAAAATTAAAGGC+AGG | - | chr3.1:64456186-64456205 | None:intergenic | 30.0% | |
| CACCCAATGTAGAAAATTAA+AGG | - | chr3.1:64456190-64456209 | None:intergenic | 30.0% | |
| CCTAAAAAGTTATCTTTAGC+AGG | - | chr3.1:64455145-64455164 | None:intergenic | 30.0% | |
| GAAAACATAAAACTGACATC+AGG | - | chr3.1:64456947-64456966 | None:intergenic | 30.0% | |
| GACAATATTAGTAAGTTTGC+AGG | - | chr3.1:64455885-64455904 | None:intergenic | 30.0% | |
| GAGAGAAATGATAAAAGAGA+AGG | - | chr3.1:64455227-64455246 | None:intergenic | 30.0% | |
| GAGAGACTTAATAGTATTCT+GGG | + | chr3.1:64457056-64457075 | MS.gene70577:CDS | 30.0% | |
| GAGTATTTATGTCAGTTCTT+TGG | + | chr3.1:64457126-64457145 | MS.gene70577:CDS | 30.0% | |
| GATGTAAGCACTAAAAACAT+GGG | - | chr3.1:64456767-64456786 | None:intergenic | 30.0% | |
| GGGTGATAAATTGATTATCA+TGG | - | chr3.1:64456165-64456184 | None:intergenic | 30.0% | |
| GTTTCTTTCATGCTATTGAT+TGG | + | chr3.1:64455164-64455183 | MS.gene70577:CDS | 30.0% | |
| TAAATTGATTATCATGGGGA+AGG | - | chr3.1:64456159-64456178 | None:intergenic | 30.0% | |
| TCAAAGCATGATAGGATAAA+TGG | - | chr3.1:64456392-64456411 | None:intergenic | 30.0% | |
| TCGCTACTAAATTGAACTTA+GGG | + | chr3.1:64455471-64455490 | MS.gene70577:intron | 30.0% | |
| TGAGAGACTTAATAGTATTC+TGG | + | chr3.1:64457055-64457074 | MS.gene70577:CDS | 30.0% | |
| TGTCTATCTGATACAAGTTT+AGG | - | chr3.1:64456725-64456744 | None:intergenic | 30.0% | |
| TTCGCTACTAAATTGAACTT+AGG | + | chr3.1:64455470-64455489 | MS.gene70577:intron | 30.0% | |
| TTTATCCTATCATGCTTTGA+TGG | + | chr3.1:64456392-64456411 | MS.gene70577:intron | 30.0% | |
| ! | CCTGCTAAAGATAACTTTTT+AGG | + | chr3.1:64455142-64455161 | MS.gene70577:CDS | 30.0% |
| ! | TCATTTTCCATGCACATATT+TGG | + | chr3.1:64456904-64456923 | MS.gene70577:intron | 30.0% |
| ! | TGTCATGTTTTGTACTTGTT+TGG | + | chr3.1:64455372-64455391 | MS.gene70577:intron | 30.0% |
| !! | CTGCCTTTAATTTTCTACAT+TGG | + | chr3.1:64456184-64456203 | MS.gene70577:intron | 30.0% |
| !!! | CAAAACTATTTTGATCCAAG+TGG | + | chr3.1:64457104-64457123 | MS.gene70577:CDS | 30.0% |
| AACCACTGAGTTGTCAAATA+GGG | + | chr3.1:64455728-64455747 | MS.gene70577:intron | 35.0% | |
| AATTGATAGGGAAGAATGGA+TGG | + | chr3.1:64456802-64456821 | MS.gene70577:intron | 35.0% | |
| ACCATAATGGTTGTGACATA+AGG | - | chr3.1:64457200-64457219 | None:intergenic | 35.0% | |
| ACTGACATAAATACTCCACT+TGG | - | chr3.1:64457122-64457141 | None:intergenic | 35.0% | |
| CATAATGGTTGTGACATAAG+GGG | - | chr3.1:64457198-64457217 | None:intergenic | 35.0% | |
| CCATAATGGTTGTGACATAA+GGG | - | chr3.1:64457199-64457218 | None:intergenic | 35.0% | |
| CTAGTTCGATAGCTATTTAG+AGG | + | chr3.1:64456577-64456596 | MS.gene70577:intron | 35.0% | |
| GAGACTTAATAGTATTCTGG+GGG | + | chr3.1:64457058-64457077 | MS.gene70577:CDS | 35.0% | |
| GTAAACACCAAATATGTGCA+TGG | - | chr3.1:64456914-64456933 | None:intergenic | 35.0% | |
| GTATATCTTCTCTACACCAT+AGG | - | chr3.1:64456671-64456690 | None:intergenic | 35.0% | |
| TATTATCTTAGCCACTGATC+AGG | + | chr3.1:64456531-64456550 | MS.gene70577:intron | 35.0% | |
| TGCATTCGCTATGATAATCT+TGG | + | chr3.1:64457163-64457182 | MS.gene70577:CDS | 35.0% | |
| TGTGTGCATCTTATCTAAAC+CGG | - | chr3.1:64456858-64456877 | None:intergenic | 35.0% | |
| TTCGCTATGATAATCTTGGT+TGG | + | chr3.1:64457167-64457186 | MS.gene70577:intron | 35.0% | |
| TTGCTGTAGTCTATTCTGTT+TGG | + | chr3.1:64456343-64456362 | MS.gene70577:intron | 35.0% | |
| TTTATGTCAGTTCTTTGGTC+TGG | + | chr3.1:64457131-64457150 | MS.gene70577:CDS | 35.0% | |
| ! | CAGGAAAGAATACAGTGTTT+TGG | + | chr3.1:64456622-64456641 | MS.gene70577:intron | 35.0% |
| ! | CTTTCATGCTATTGATTGGA+AGG | + | chr3.1:64455168-64455187 | MS.gene70577:CDS | 35.0% |
| !! | TCTTGGAAATTGTTTTGCAG+TGG | + | chr3.1:64457016-64457035 | MS.gene70577:intron | 35.0% |
| !! | TGTTTTTGTTTCAGGAACCT+TGG | + | chr3.1:64455917-64455936 | MS.gene70577:intron | 35.0% |
| AAAGATGACCGTCACCATAA+TGG | - | chr3.1:64457213-64457232 | None:intergenic | 40.0% | |
| AAGCACTAAAAACATGGGCA+TGG | - | chr3.1:64456762-64456781 | None:intergenic | 40.0% | |
| AATGCTACGTACACGTCAAA+AGG | - | chr3.1:64456029-64456048 | None:intergenic | 40.0% | |
| AATTGAACTTAGGGCCTGTT+TGG | + | chr3.1:64455480-64455499 | MS.gene70577:intron | 40.0% | |
| ACAGACACAAGAATGCACAA+TGG | - | chr3.1:64456884-64456903 | None:intergenic | 40.0% | |
| ACATTGGGTGAAATACTGAG+CGG | + | chr3.1:64456200-64456219 | MS.gene70577:intron | 40.0% | |
| ACCACTGAGTTGTCAAATAG+GGG | + | chr3.1:64455729-64455748 | MS.gene70577:intron | 40.0% | |
| ACCGCGGATTTGTATTAATC+AGG | - | chr3.1:64455641-64455660 | None:intergenic | 40.0% | |
| ATCATAGCGAATGCAAGAAG+AGG | - | chr3.1:64457158-64457177 | None:intergenic | 40.0% | |
| CAACCACTGAGTTGTCAAAT+AGG | + | chr3.1:64455727-64455746 | MS.gene70577:intron | 40.0% | |
| CAATCTTTACCCCACTAAGT+GGG | - | chr3.1:64456313-64456332 | None:intergenic | 40.0% | |
| CAGACACAAGAATGCACAAT+GGG | - | chr3.1:64456883-64456902 | None:intergenic | 40.0% | |
| CCCTGATTAATACAAATCCG+CGG | + | chr3.1:64455637-64455656 | MS.gene70577:intron | 40.0% | |
| CCCTTATGTCACAACCATTA+TGG | + | chr3.1:64457196-64457215 | MS.gene70577:intron | 40.0% | |
| CCGCGGATTTGTATTAATCA+GGG | - | chr3.1:64455640-64455659 | None:intergenic | 40.0% | |
| CGATGAACTGAAATCTGCTA+TGG | + | chr3.1:64455051-64455070 | MS.gene70577:CDS | 40.0% | |
| CGCGGATTTGTATTAATCAG+GGG | - | chr3.1:64455639-64455658 | None:intergenic | 40.0% | |
| CTTCAAACAGAAGTGAAGTG+AGG | - | chr3.1:64456130-64456149 | None:intergenic | 40.0% | |
| GAACAAGCACATCTGAAAGT+TGG | - | chr3.1:64456007-64456026 | None:intergenic | 40.0% | |
| GATAGCTATTTAGAGGAGAG+TGG | + | chr3.1:64456584-64456603 | MS.gene70577:intron | 40.0% | |
| GTGGACAGGTTATAAATGAC+AGG | + | chr3.1:64456603-64456622 | MS.gene70577:intron | 40.0% | |
| GTGTGCATCTTATCTAAACC+GGG | - | chr3.1:64456857-64456876 | None:intergenic | 40.0% | |
| TAAGACGCAAGAATGCACAA+TGG | - | chr3.1:64456700-64456719 | None:intergenic | 40.0% | |
| TCAATCTTTACCCCACTAAG+TGG | - | chr3.1:64456314-64456333 | None:intergenic | 40.0% | |
| TCGCAAGAAGCAATAGAACA+TGG | - | chr3.1:64455963-64455982 | None:intergenic | 40.0% | |
| TGAACTAAGACATCGTGCAA+GGG | + | chr3.1:64457357-64457376 | MS.gene70577:CDS | 40.0% | |
| TGAACTGAAATCTGCTATGG+AGG | + | chr3.1:64455054-64455073 | MS.gene70577:CDS | 40.0% | |
| TGCAACCATCAAAGCATGAT+AGG | - | chr3.1:64456400-64456419 | None:intergenic | 40.0% | |
| TGTCACAACCATTATGGTGA+CGG | + | chr3.1:64457202-64457221 | MS.gene70577:intron | 40.0% | |
| TTCTTGCGATTATTGTCTCC+AGG | + | chr3.1:64455974-64455993 | MS.gene70577:CDS | 40.0% | |
| ! | AGGGAAGAATGGATGGTTTT+GGG | + | chr3.1:64456809-64456828 | MS.gene70577:intron | 40.0% |
| ! | ATAGTATTCTGGGGGAAAAC+TGG | + | chr3.1:64457066-64457085 | MS.gene70577:CDS | 40.0% |
| ! | CCTAAACTTTTGTACCAACC+AGG | + | chr3.1:64455704-64455723 | MS.gene70577:intron | 40.0% |
| ! | CCTGGTTGGTACAAAAGTTT+AGG | - | chr3.1:64455707-64455726 | None:intergenic | 40.0% |
| ! | GTATTAATCAGGGGCTTGTT+TGG | - | chr3.1:64455630-64455649 | None:intergenic | 40.0% |
| ! | TAGGGAAGAATGGATGGTTT+TGG | + | chr3.1:64456808-64456827 | MS.gene70577:intron | 40.0% |
| !! | CTGAAAGTTGGTATTCTTCC+TGG | - | chr3.1:64455995-64456014 | None:intergenic | 40.0% |
| !!! | GAATGGATGGTTTTGGGTTT+TGG | + | chr3.1:64456815-64456834 | MS.gene70577:intron | 40.0% |
| AGCGGCGATAACGTGATATT+TGG | + | chr3.1:64456218-64456237 | MS.gene70577:intron | 45.0% | |
| CTATTTAGAGGAGAGTGGAC+AGG | + | chr3.1:64456589-64456608 | MS.gene70577:intron | 45.0% | |
| CTGAACTAAGACATCGTGCA+AGG | + | chr3.1:64457356-64457375 | MS.gene70577:CDS | 45.0% | |
| GAAATTGGAGGGAGAAGAGT+AGG | - | chr3.1:64455196-64455215 | None:intergenic | 45.0% | |
| GTCCAAAAAGATACACACCG+CGG | - | chr3.1:64455657-64455676 | None:intergenic | 45.0% | |
| GTTAACAATCCCAGTAGCCA+AGG | - | chr3.1:64455937-64455956 | None:intergenic | 45.0% | |
| TATCTCCATGACCTGATCAG+TGG | - | chr3.1:64456545-64456564 | None:intergenic | 45.0% | |
| TTTCAGGAACCTTGGCTACT+GGG | + | chr3.1:64455925-64455944 | MS.gene70577:intron | 45.0% | |
| ! | ATCCGCGGTGTGTATCTTTT+TGG | + | chr3.1:64455652-64455671 | MS.gene70577:intron | 45.0% |
| !! | GGAAATTGTTTTGCAGTGGC+TGG | + | chr3.1:64457020-64457039 | MS.gene70577:intron | 45.0% |
| !!! | GATGGTTTTGGGTTTTGGAG+TGG | + | chr3.1:64456820-64456839 | MS.gene70577:intron | 45.0% |
| !!! | TGGGTTTTGGAGTGGAACTT+TGG | + | chr3.1:64456828-64456847 | MS.gene70577:intron | 45.0% |
| AAGGTTTGCGGCGAAATTGG+AGG | - | chr3.1:64455208-64455227 | None:intergenic | 50.0% | |
| AGGTTTGCGGCGAAATTGGA+GGG | - | chr3.1:64455207-64455226 | None:intergenic | 50.0% | |
| ATGTAGCCGACCCACTTAGT+GGG | + | chr3.1:64456300-64456319 | MS.gene70577:intron | 50.0% | |
| CTTAGCCACTGATCAGGTCA+TGG | + | chr3.1:64456537-64456556 | MS.gene70577:intron | 50.0% | |
| CTTTACCCCACTAAGTGGGT+CGG | - | chr3.1:64456309-64456328 | None:intergenic | 50.0% | |
| GAGAAGGTTTGCGGCGAAAT+TGG | - | chr3.1:64455211-64455230 | None:intergenic | 50.0% | |
| GCCCCTATTTGACAACTCAG+TGG | - | chr3.1:64455733-64455752 | None:intergenic | 50.0% | |
| GGAGTGGAACTTTGGATACC+CGG | + | chr3.1:64456836-64456855 | MS.gene70577:intron | 50.0% | |
| GTTTCAGGAACCTTGGCTAC+TGG | + | chr3.1:64455924-64455943 | MS.gene70577:intron | 50.0% | |
| TTGACAACTCAGTGGTTGCC+TGG | - | chr3.1:64455725-64455744 | None:intergenic | 50.0% | |
| AAGGGCTGCTCGTAGTAAGC+AGG | + | chr3.1:64457375-64457394 | MS.gene70577:CDS | 55.0% | |
| CAACTCAGTGGTTGCCTGGT+TGG | - | chr3.1:64455721-64455740 | None:intergenic | 55.0% | |
| CACTAAGTGGGTCGGCTACA+TGG | - | chr3.1:64456301-64456320 | None:intergenic | 55.0% | |
| CATGTAGCCGACCCACTTAG+TGG | + | chr3.1:64456299-64456318 | MS.gene70577:intron | 55.0% | |
| TGTAGCCGACCCACTTAGTG+GGG | + | chr3.1:64456301-64456320 | MS.gene70577:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 64455043 | 64457402 | 64455043 | ID=MS.gene70577 |
| chr3.1 | mRNA | 64455043 | 64457402 | 64455043 | ID=MS.gene70577.t1;Parent=MS.gene70577 |
| chr3.1 | exon | 64455043 | 64455189 | 64455043 | ID=MS.gene70577.t1.exon1;Parent=MS.gene70577.t1 |
| chr3.1 | CDS | 64455043 | 64455189 | 64455043 | ID=cds.MS.gene70577.t1;Parent=MS.gene70577.t1 |
| chr3.1 | exon | 64455931 | 64456036 | 64455931 | ID=MS.gene70577.t1.exon2;Parent=MS.gene70577.t1 |
| chr3.1 | CDS | 64455931 | 64456036 | 64455931 | ID=cds.MS.gene70577.t1;Parent=MS.gene70577.t1 |
| chr3.1 | exon | 64457036 | 64457184 | 64457036 | ID=MS.gene70577.t1.exon3;Parent=MS.gene70577.t1 |
| chr3.1 | CDS | 64457036 | 64457184 | 64457036 | ID=cds.MS.gene70577.t1;Parent=MS.gene70577.t1 |
| chr3.1 | exon | 64457307 | 64457402 | 64457307 | ID=MS.gene70577.t1.exon4;Parent=MS.gene70577.t1 |
| chr3.1 | CDS | 64457307 | 64457402 | 64457307 | ID=cds.MS.gene70577.t1;Parent=MS.gene70577.t1 |
| Gene Sequence |
| Protein sequence |
