Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72477.t1 | AES66493.2 | 88.7 | 318 | 35 | 1 | 2 | 318 | 500 | 817 | 3.50E-160 | 574.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72477.t1 | C0LGN2 | 67.1 | 322 | 96 | 1 | 7 | 318 | 516 | 837 | 1.3e-118 | 427.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72477.t1 | G7IJE2 | 88.7 | 318 | 35 | 1 | 2 | 318 | 500 | 817 | 2.5e-160 | 574.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene72477 | 0.808701 | 2.72E-50 | -1.69E-46 |
| MS.gene049153 | MS.gene72477 | 0.804382 | 2.22E-49 | -1.69E-46 |
| MS.gene049681 | MS.gene72477 | 0.800358 | 1.50E-48 | -1.69E-46 |
| MS.gene049910 | MS.gene72477 | 0.822334 | 2.50E-53 | -1.69E-46 |
| MS.gene049993 | MS.gene72477 | 0.857736 | 1.33E-62 | -1.69E-46 |
| MS.gene050168 | MS.gene72477 | 0.82343 | 1.39E-53 | -1.69E-46 |
| MS.gene050301 | MS.gene72477 | 0.820646 | 6.15E-53 | -1.69E-46 |
| MS.gene050426 | MS.gene72477 | -0.800074 | 1.71E-48 | -1.69E-46 |
| MS.gene050650 | MS.gene72477 | 0.819308 | 1.24E-52 | -1.69E-46 |
| MS.gene050670 | MS.gene72477 | 0.841773 | 3.88E-58 | -1.69E-46 |
| MS.gene05105 | MS.gene72477 | 0.800402 | 1.47E-48 | -1.69E-46 |
| MS.gene051525 | MS.gene72477 | 0.867636 | 1.18E-65 | -1.69E-46 |
| MS.gene051582 | MS.gene72477 | 0.807072 | 6.04E-50 | -1.69E-46 |
| MS.gene051588 | MS.gene72477 | 0.80752 | 4.86E-50 | -1.69E-46 |
| MS.gene051860 | MS.gene72477 | 0.815881 | 7.36E-52 | -1.69E-46 |
| MS.gene052011 | MS.gene72477 | -0.865252 | 6.76E-65 | -1.69E-46 |
| MS.gene052077 | MS.gene72477 | 0.805442 | 1.33E-49 | -1.69E-46 |
| MS.gene052188 | MS.gene72477 | 0.834375 | 3.11E-56 | -1.69E-46 |
| MS.gene052253 | MS.gene72477 | 0.86472 | 9.92E-65 | -1.69E-46 |
| MS.gene052255 | MS.gene72477 | 0.80384 | 2.88E-49 | -1.69E-46 |
| MS.gene052340 | MS.gene72477 | 0.83029 | 3.19E-55 | -1.69E-46 |
| MS.gene052485 | MS.gene72477 | 0.800069 | 1.71E-48 | -1.69E-46 |
| MS.gene052902 | MS.gene72477 | 0.806094 | 9.72E-50 | -1.69E-46 |
| MS.gene053169 | MS.gene72477 | 0.816991 | 4.16E-52 | -1.69E-46 |
| MS.gene05316 | MS.gene72477 | 0.802096 | 6.60E-49 | -1.69E-46 |
| MS.gene053758 | MS.gene72477 | 0.807255 | 5.53E-50 | -1.69E-46 |
| MS.gene053836 | MS.gene72477 | 0.8195 | 1.12E-52 | -1.69E-46 |
| MS.gene053928 | MS.gene72477 | 0.827407 | 1.59E-54 | -1.69E-46 |
| MS.gene054010 | MS.gene72477 | 0.850484 | 1.65E-60 | -1.69E-46 |
| MS.gene054011 | MS.gene72477 | 0.85619 | 3.80E-62 | -1.69E-46 |
| MS.gene054012 | MS.gene72477 | 0.850896 | 1.26E-60 | -1.69E-46 |
| MS.gene054013 | MS.gene72477 | 0.849005 | 4.27E-60 | -1.69E-46 |
| MS.gene05413 | MS.gene72477 | 0.802364 | 5.81E-49 | -1.69E-46 |
| MS.gene054183 | MS.gene72477 | 0.884736 | 1.49E-71 | -1.69E-46 |
| MS.gene054349 | MS.gene72477 | 0.840237 | 9.81E-58 | -1.69E-46 |
| MS.gene054556 | MS.gene72477 | 0.844238 | 8.55E-59 | -1.69E-46 |
| MS.gene054719 | MS.gene72477 | 0.807688 | 4.47E-50 | -1.69E-46 |
| MS.gene054918 | MS.gene72477 | 0.813287 | 2.76E-51 | -1.69E-46 |
| MS.gene054920 | MS.gene72477 | 0.823875 | 1.09E-53 | -1.69E-46 |
| MS.gene055116 | MS.gene72477 | 0.851186 | 1.05E-60 | -1.69E-46 |
| MS.gene055369 | MS.gene72477 | 0.83837 | 2.99E-57 | -1.69E-46 |
| MS.gene05553 | MS.gene72477 | 0.830213 | 3.33E-55 | -1.69E-46 |
| MS.gene055604 | MS.gene72477 | 0.849251 | 3.65E-60 | -1.69E-46 |
| MS.gene055744 | MS.gene72477 | 0.803272 | 3.77E-49 | -1.69E-46 |
| MS.gene055909 | MS.gene72477 | 0.807065 | 6.06E-50 | -1.69E-46 |
| MS.gene055911 | MS.gene72477 | 0.816135 | 6.46E-52 | -1.69E-46 |
| MS.gene056191 | MS.gene72477 | 0.842393 | 2.66E-58 | -1.69E-46 |
| MS.gene056407 | MS.gene72477 | 0.808319 | 3.28E-50 | -1.69E-46 |
| MS.gene056514 | MS.gene72477 | 0.84284 | 2.02E-58 | -1.69E-46 |
| MS.gene056659 | MS.gene72477 | 0.833884 | 4.13E-56 | -1.69E-46 |
| MS.gene056723 | MS.gene72477 | 0.836333 | 9.95E-57 | -1.69E-46 |
| MS.gene056899 | MS.gene72477 | -0.800993 | 1.11E-48 | -1.69E-46 |
| MS.gene056902 | MS.gene72477 | 0.817599 | 3.03E-52 | -1.69E-46 |
| MS.gene05702 | MS.gene72477 | 0.816452 | 5.49E-52 | -1.69E-46 |
| MS.gene057396 | MS.gene72477 | 0.838474 | 2.82E-57 | -1.69E-46 |
| MS.gene057469 | MS.gene72477 | 0.824555 | 7.58E-54 | -1.69E-46 |
| MS.gene057476 | MS.gene72477 | 0.845901 | 3.04E-59 | -1.69E-46 |
| MS.gene057749 | MS.gene72477 | 0.843513 | 1.34E-58 | -1.69E-46 |
| MS.gene057823 | MS.gene72477 | 0.837475 | 5.09E-57 | -1.69E-46 |
| MS.gene057825 | MS.gene72477 | 0.846994 | 1.53E-59 | -1.69E-46 |
| MS.gene057826 | MS.gene72477 | 0.812955 | 3.27E-51 | -1.69E-46 |
| MS.gene057888 | MS.gene72477 | 0.855976 | 4.39E-62 | -1.69E-46 |
| MS.gene058002 | MS.gene72477 | 0.811428 | 7.04E-51 | -1.69E-46 |
| MS.gene058007 | MS.gene72477 | 0.823903 | 1.08E-53 | -1.69E-46 |
| MS.gene05811 | MS.gene72477 | 0.807201 | 5.67E-50 | -1.69E-46 |
| MS.gene058142 | MS.gene72477 | 0.821502 | 3.90E-53 | -1.69E-46 |
| MS.gene058220 | MS.gene72477 | 0.803697 | 3.08E-49 | -1.69E-46 |
| MS.gene058700 | MS.gene72477 | 0.822435 | 2.37E-53 | -1.69E-46 |
| MS.gene05886 | MS.gene72477 | 0.859976 | 2.85E-63 | -1.69E-46 |
| MS.gene058949 | MS.gene72477 | 0.819994 | 8.67E-53 | -1.69E-46 |
| MS.gene058995 | MS.gene72477 | 0.818025 | 2.43E-52 | -1.69E-46 |
| MS.gene059011 | MS.gene72477 | 0.831654 | 1.48E-55 | -1.69E-46 |
| MS.gene05907 | MS.gene72477 | 0.831888 | 1.29E-55 | -1.69E-46 |
| MS.gene059082 | MS.gene72477 | 0.861465 | 1.01E-63 | -1.69E-46 |
| MS.gene059141 | MS.gene72477 | 0.807974 | 3.89E-50 | -1.69E-46 |
| MS.gene059285 | MS.gene72477 | 0.804745 | 1.86E-49 | -1.69E-46 |
| MS.gene059294 | MS.gene72477 | 0.811491 | 6.82E-51 | -1.69E-46 |
| MS.gene059420 | MS.gene72477 | 0.880888 | 3.79E-70 | -1.69E-46 |
| MS.gene059462 | MS.gene72477 | 0.878571 | 2.52E-69 | -1.69E-46 |
| MS.gene059688 | MS.gene72477 | 0.827196 | 1.79E-54 | -1.69E-46 |
| MS.gene059692 | MS.gene72477 | 0.818822 | 1.60E-52 | -1.69E-46 |
| MS.gene059695 | MS.gene72477 | 0.82216 | 2.75E-53 | -1.69E-46 |
| MS.gene059807 | MS.gene72477 | 0.812389 | 4.35E-51 | -1.69E-46 |
| MS.gene05984 | MS.gene72477 | 0.806995 | 6.28E-50 | -1.69E-46 |
| MS.gene059876 | MS.gene72477 | 0.844194 | 8.79E-59 | -1.69E-46 |
| MS.gene060038 | MS.gene72477 | 0.810929 | 9.03E-51 | -1.69E-46 |
| MS.gene060247 | MS.gene72477 | 0.849123 | 3.96E-60 | -1.69E-46 |
| MS.gene061049 | MS.gene72477 | 0.844478 | 7.37E-59 | -1.69E-46 |
| MS.gene061154 | MS.gene72477 | 0.81113 | 8.17E-51 | -1.69E-46 |
| MS.gene061159 | MS.gene72477 | 0.834925 | 2.26E-56 | -1.69E-46 |
| MS.gene061214 | MS.gene72477 | 0.821757 | 3.41E-53 | -1.69E-46 |
| MS.gene061215 | MS.gene72477 | 0.823485 | 1.35E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 79 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTATAATCATTGTAGTATT+TGG | 0.131092 | 2.3:+21960378 | MS.gene72477:CDS |
| TCCTCCTTCTCCAATCTTAT+TGG | 0.132396 | 2.3:-21960805 | None:intergenic |
| TTGACCAATCCAATCTTATT+TGG | 0.182119 | 2.3:-21961290 | None:intergenic |
| AAACCAAAATCTGATATCTT+AGG | 0.185271 | 2.3:-21961435 | None:intergenic |
| GACCCTAAGATATCAGATTT+TGG | 0.208491 | 2.3:+21961432 | MS.gene72477:CDS |
| AGTTTAGCTCGTGCTTTATT+TGG | 0.217275 | 2.3:+21961125 | MS.gene72477:CDS |
| GATGAATCTTATGGTATTCT+TGG | 0.238094 | 2.3:+21959793 | MS.gene72477:CDS |
| CCTTCAGTCTTGATTCTTCA+TGG | 0.244078 | 2.3:-21961359 | None:intergenic |
| GGACCGTATACTGATCTATT+TGG | 0.245616 | 2.3:-21960175 | None:intergenic |
| AATCTTATTTGGTGTTCTTC+TGG | 0.273132 | 2.3:-21961279 | None:intergenic |
| CTTTGGTGGAAAGGATGTTT+TGG | 0.276152 | 2.3:+21960405 | MS.gene72477:CDS |
| AAGATTGGAGAAGGAGGATT+TGG | 0.341896 | 2.3:+21960810 | MS.gene72477:CDS |
| TTTGATATTTCCAATAAGAT+TGG | 0.347910 | 2.3:+21960795 | MS.gene72477:CDS |
| GCTCCTATAGACATGCTTCC+AGG | 0.354414 | 2.3:-21960327 | None:intergenic |
| CTTTGGAGATCCGCTTGTAT+TGG | 0.360659 | 2.3:+21960128 | MS.gene72477:CDS |
| CACATTAGCACTAGAATTGC+TGG | 0.367913 | 2.3:+21961486 | MS.gene72477:CDS |
| TATGTATAATACCTTGTAAA+CGG | 0.371968 | 2.3:-21960835 | None:intergenic |
| TTTGGAGATCCGCTTGTATT+GGG | 0.377369 | 2.3:+21960129 | MS.gene72477:CDS |
| CGCTTGTATTGGGCTGGAAA+AGG | 0.393043 | 2.3:+21960139 | MS.gene72477:CDS |
| TTGACAAACGATGAATCTTA+TGG | 0.405877 | 2.3:+21959784 | MS.gene72477:CDS |
| TGTATCAAGCAATACATTTG+TGG | 0.417127 | 2.3:-21961403 | None:intergenic |
| GACCGTATACTGATCTATTT+GGG | 0.424329 | 2.3:-21960174 | None:intergenic |
| TGTATTTGATATCTACCTTC+AGG | 0.427286 | 2.3:+21959822 | MS.gene72477:CDS |
| ATGTATAATACCTTGTAAAC+GGG | 0.431665 | 2.3:-21960834 | None:intergenic |
| AACCAAAATCTGATATCTTA+GGG | 0.437112 | 2.3:-21961434 | None:intergenic |
| AGAAGAACACCAAATAAGAT+TGG | 0.437641 | 2.3:+21961281 | MS.gene72477:CDS |
| TGTTGGTATTGCTAGAGGTT+TGG | 0.442437 | 2.3:+21961329 | MS.gene72477:CDS |
| TGATGTTACTAGTAATACTT+TGG | 0.447819 | 2.3:+21960111 | MS.gene72477:CDS |
| CCGTGGAGTCTAACAAGATA+AGG | 0.448349 | 2.3:-21961047 | None:intergenic |
| CACTGCTATCAATGACCCAT+TGG | 0.448933 | 2.3:-21960946 | None:intergenic |
| TTGTAGTATTTGGCATACTT+TGG | 0.449996 | 2.3:+21960388 | MS.gene72477:CDS |
| TTAGGGAAAGCCAGTGCAAA+AGG | 0.456307 | 2.3:+21960027 | MS.gene72477:intron |
| GAGATCCGCTTGTATTGGGC+TGG | 0.462315 | 2.3:+21960133 | MS.gene72477:CDS |
| CCACCTGGAAGCATGTCTAT+AGG | 0.465122 | 2.3:+21960324 | MS.gene72477:CDS |
| TTCAATATTGCAGAAGAAGC+AGG | 0.465495 | 2.3:+21960052 | MS.gene72477:CDS |
| TCAGCTATATCAATCGAATC+TGG | 0.473612 | 2.3:+21960205 | MS.gene72477:CDS |
| GCTTGTATTGGGCTGGAAAA+GGG | 0.480410 | 2.3:+21960140 | MS.gene72477:CDS |
| TGAAGGGATGTTTACCCAAT+GGG | 0.481536 | 2.3:+21960931 | MS.gene72477:intron |
| GCAGAAGAAGCAGGAGGAGT+TGG | 0.485938 | 2.3:+21960061 | MS.gene72477:CDS |
| TAGTATTTGGCATACTTTGG+TGG | 0.498592 | 2.3:+21960391 | MS.gene72477:CDS |
| AGGATTTGGTCCCGTTTACA+AGG | 0.499041 | 2.3:+21960824 | MS.gene72477:CDS |
| AAGAATTTAGACTTGCAAAC+GGG | 0.499062 | 2.3:+21960732 | MS.gene72477:CDS |
| CAAGAATTTAGACTTGCAAA+CGG | 0.504127 | 2.3:+21960731 | MS.gene72477:CDS |
| TTTGGCATACTTTGGTGGAA+AGG | 0.507883 | 2.3:+21960396 | MS.gene72477:CDS |
| CTCCCAAATAGATCAGTATA+CGG | 0.512311 | 2.3:+21960172 | MS.gene72477:CDS |
| CGTGGAGTCTAACAAGATAA+GGG | 0.514734 | 2.3:-21961046 | None:intergenic |
| CAAGACTGAAGGTTGTTCAC+AGG | 0.518567 | 2.3:+21961370 | MS.gene72477:CDS |
| ACTGCTATCAATGACCCATT+GGG | 0.528433 | 2.3:-21960945 | None:intergenic |
| TCCAATAAGATTGGAGAAGG+AGG | 0.532435 | 2.3:+21960804 | MS.gene72477:CDS |
| AGGAGCTGTGGTGGGAATTG+TGG | 0.533877 | 2.3:+21960344 | MS.gene72477:CDS |
| CCTTATCTTGTTAGACTCCA+CGG | 0.534420 | 2.3:+21961047 | MS.gene72477:CDS |
| ATTGTCCTCCTCGTCAAGCT+TGG | 0.539676 | 2.3:-21961460 | None:intergenic |
| AATCAAGCAGATTCTCCACC+TGG | 0.548312 | 2.3:+21960309 | MS.gene72477:intron |
| ATTTGTGTTGGTATTGCTAG+AGG | 0.550216 | 2.3:+21961324 | MS.gene72477:CDS |
| AACACCAAATAAGATTGGAT+TGG | 0.554336 | 2.3:+21961286 | MS.gene72477:CDS |
| ATGAAGGGATGTTTACCCAA+TGG | 0.556423 | 2.3:+21960930 | MS.gene72477:intron |
| GTTGCTGATATATGAGTACT+TGG | 0.559612 | 2.3:+21961094 | MS.gene72477:CDS |
| CATGTCTATAGGAGCTGTGG+TGG | 0.563051 | 2.3:+21960335 | MS.gene72477:CDS |
| ATTTCCAATAAGATTGGAGA+AGG | 0.563365 | 2.3:+21960801 | MS.gene72477:CDS |
| CTTTCTTCTACATCAAAGCA+AGG | 0.565281 | 2.3:+21960975 | MS.gene72477:CDS |
| ACTCCACGGTTGTTGTGTGG+AGG | 0.571057 | 2.3:+21961061 | MS.gene72477:CDS |
| CTCCACGGTTGTTGTGTGGA+GGG | 0.578056 | 2.3:+21961062 | MS.gene72477:CDS |
| ACAAGGAAGAAGATTTGTGT+TGG | 0.582608 | 2.3:+21961312 | MS.gene72477:CDS |
| CCATGAAGAATCAAGACTGA+AGG | 0.610451 | 2.3:+21961359 | MS.gene72477:CDS |
| ATTGATATAGCTGATATAAG+CGG | 0.611965 | 2.3:-21960196 | None:intergenic |
| TTTCTTCTACATCAAAGCAA+GGG | 0.612521 | 2.3:+21960976 | MS.gene72477:CDS |
| ACATTAGCACTAGAATTGCT+GGG | 0.612762 | 2.3:+21961487 | MS.gene72477:CDS |
| TGGTTTGGCCAAGCTTGACG+AGG | 0.619289 | 2.3:+21961452 | MS.gene72477:CDS |
| TAGACTCCACGGTTGTTGTG+TGG | 0.620825 | 2.3:+21961058 | MS.gene72477:CDS |
| TTTGGCCAAGCTTGACGAGG+AGG | 0.626935 | 2.3:+21961455 | MS.gene72477:CDS |
| TAAGATTGGATTGGTCAACA+AGG | 0.638125 | 2.3:+21961295 | MS.gene72477:CDS |
| TTGGTAAGAAAGTCGTAAGA+CGG | 0.645941 | 2.3:+21960080 | MS.gene72477:CDS |
| AAGACTGAAGGTTGTTCACA+GGG | 0.649361 | 2.3:+21961371 | MS.gene72477:CDS |
| AAGCATGTCTATAGGAGCTG+TGG | 0.650347 | 2.3:+21960332 | MS.gene72477:CDS |
| CTCCCTCCACACAACAACCG+TGG | 0.657009 | 2.3:-21961064 | None:intergenic |
| CCTATAGACATGCTTCCAGG+TGG | 0.661725 | 2.3:-21960324 | None:intergenic |
| ATGTCTATAGGAGCTGTGGT+GGG | 0.664094 | 2.3:+21960336 | MS.gene72477:CDS |
| TCAGTCTTGATTCTTCATGG+AGG | 0.684458 | 2.3:-21961356 | None:intergenic |
| AATATTGCAGAAGAAGCAGG+AGG | 0.704798 | 2.3:+21960055 | MS.gene72477:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATAATCATTGTAGTATT+TGG | + | chr2.3:21960378-21960397 | MS.gene72477:CDS | 15.0% |
| !! | ATTATTCTAGTGATAAATAA+AGG | + | chr2.3:21960510-21960529 | MS.gene72477:intron | 15.0% |
| !! | TTAGTATATCATGTTATATA+TGG | + | chr2.3:21960572-21960591 | MS.gene72477:intron | 15.0% |
| !!! | GTTATGATTGAAATTTTTTA+GGG | + | chr2.3:21960010-21960029 | MS.gene72477:intron | 15.0% |
| !! | CATATTACTTTCTCAAATAA+AGG | + | chr2.3:21961255-21961274 | MS.gene72477:intron | 20.0% |
| !! | GTAATAATCATGAAACTTTA+AGG | + | chr2.3:21959988-21960007 | MS.gene72477:intron | 20.0% |
| !! | TATGTATAATACCTTGTAAA+CGG | - | chr2.3:21960838-21960857 | None:intergenic | 20.0% |
| !! | TTCAATATTAGATCATAACA+TGG | - | chr2.3:21960272-21960291 | None:intergenic | 20.0% |
| !! | TTTGATATTTCCAATAAGAT+TGG | + | chr2.3:21960795-21960814 | MS.gene72477:CDS | 20.0% |
| !!! | GGTTATGATTGAAATTTTTT+AGG | + | chr2.3:21960009-21960028 | MS.gene72477:intron | 20.0% |
| ! | AAACCAAAATCTGATATCTT+AGG | - | chr2.3:21961438-21961457 | None:intergenic | 25.0% |
| ! | AACCAAAATCTGATATCTTA+GGG | - | chr2.3:21961437-21961456 | None:intergenic | 25.0% |
| ! | AAGAAAAACTCATTAGCAAA+AGG | + | chr2.3:21960429-21960448 | MS.gene72477:CDS | 25.0% |
| ! | AATATGTTGTGTGTTAAGTT+AGG | - | chr2.3:21961241-21961260 | None:intergenic | 25.0% |
| ! | ATGTATAATACCTTGTAAAC+GGG | - | chr2.3:21960837-21960856 | None:intergenic | 25.0% |
| ! | ATTGATATAGCTGATATAAG+CGG | - | chr2.3:21960199-21960218 | None:intergenic | 25.0% |
| ! | GTGTTTCATAAATAGTTGTA+TGG | + | chr2.3:21959886-21959905 | MS.gene72477:intron | 25.0% |
| ! | TGAACTAATAAAATCACACA+CGG | - | chr2.3:21960671-21960690 | None:intergenic | 25.0% |
| ! | TGATGTTACTAGTAATACTT+TGG | + | chr2.3:21960111-21960130 | MS.gene72477:CDS | 25.0% |
| ! | TTAGATAAAAATGGCAACAA+AGG | - | chr2.3:21960472-21960491 | None:intergenic | 25.0% |
| !! | TATCAAAGTAAAACTAGTCT+AGG | - | chr2.3:21960600-21960619 | None:intergenic | 25.0% |
| !!! | TAAGATATCAGATTTTGGTT+TGG | + | chr2.3:21961437-21961456 | MS.gene72477:CDS | 25.0% |
| AACACCAAATAAGATTGGAT+TGG | + | chr2.3:21961286-21961305 | MS.gene72477:CDS | 30.0% | |
| AAGAATTTAGACTTGCAAAC+GGG | + | chr2.3:21960732-21960751 | MS.gene72477:CDS | 30.0% | |
| AATAGCATTCCTCAAAATGA+AGG | + | chr2.3:21960914-21960933 | MS.gene72477:intron | 30.0% | |
| ACTGAGTAACTATTGGAATT+TGG | - | chr2.3:21959868-21959887 | None:intergenic | 30.0% | |
| AGAAGAACACCAAATAAGAT+TGG | + | chr2.3:21961281-21961300 | MS.gene72477:CDS | 30.0% | |
| ATAGCATTCCTCAAAATGAA+GGG | + | chr2.3:21960915-21960934 | MS.gene72477:intron | 30.0% | |
| ATGAAACACTGAGTAACTAT+TGG | - | chr2.3:21959875-21959894 | None:intergenic | 30.0% | |
| ATTTCCAATAAGATTGGAGA+AGG | + | chr2.3:21960801-21960820 | MS.gene72477:CDS | 30.0% | |
| CAAGAATTTAGACTTGCAAA+CGG | + | chr2.3:21960731-21960750 | MS.gene72477:CDS | 30.0% | |
| CACTAGAATAATATGTGCAT+TGG | - | chr2.3:21960502-21960521 | None:intergenic | 30.0% | |
| CTTCAGGTAACTATTTATGT+AGG | - | chr2.3:21959939-21959958 | None:intergenic | 30.0% | |
| GATGAATCTTATGGTATTCT+TGG | + | chr2.3:21959793-21959812 | MS.gene72477:CDS | 30.0% | |
| GGCAAAACGTTAGATAAAAA+TGG | - | chr2.3:21960481-21960500 | None:intergenic | 30.0% | |
| TGATTATTACATGTCCCTAT+AGG | - | chr2.3:21959978-21959997 | None:intergenic | 30.0% | |
| TGTATCAAGCAATACATTTG+TGG | - | chr2.3:21961406-21961425 | None:intergenic | 30.0% | |
| TGTATTTGATATCTACCTTC+AGG | + | chr2.3:21959822-21959841 | MS.gene72477:CDS | 30.0% | |
| TTGACAAACGATGAATCTTA+TGG | + | chr2.3:21959784-21959803 | MS.gene72477:CDS | 30.0% | |
| TTGACCAATCCAATCTTATT+TGG | - | chr2.3:21961293-21961312 | None:intergenic | 30.0% | |
| TTGTAGTATTTGGCATACTT+TGG | + | chr2.3:21960388-21960407 | MS.gene72477:CDS | 30.0% | |
| TTTCTTCTACATCAAAGCAA+GGG | + | chr2.3:21960976-21960995 | MS.gene72477:CDS | 30.0% | |
| ! | CGTGAGTTTTTAAATGAGAT+AGG | + | chr2.3:21961002-21961021 | MS.gene72477:CDS | 30.0% |
| !! | AATCTTATTTGGTGTTCTTC+TGG | - | chr2.3:21961282-21961301 | None:intergenic | 30.0% |
| ACAAGGAAGAAGATTTGTGT+TGG | + | chr2.3:21961312-21961331 | MS.gene72477:CDS | 35.0% | |
| ACATGACTATGTAGTACCAT+TGG | + | chr2.3:21961214-21961233 | MS.gene72477:intron | 35.0% | |
| ACATTAGCACTAGAATTGCT+GGG | + | chr2.3:21961487-21961506 | MS.gene72477:CDS | 35.0% | |
| CAACTCGATGTAGATCATAT+AGG | - | chr2.3:21961159-21961178 | None:intergenic | 35.0% | |
| CATGACTATGTAGTACCATT+GGG | + | chr2.3:21961215-21961234 | MS.gene72477:intron | 35.0% | |
| CTATATCAATCGAATCTGGT+GGG | + | chr2.3:21960209-21960228 | MS.gene72477:intron | 35.0% | |
| CTCCCAAATAGATCAGTATA+CGG | + | chr2.3:21960172-21960191 | MS.gene72477:CDS | 35.0% | |
| CTTTCTTCTACATCAAAGCA+AGG | + | chr2.3:21960975-21960994 | MS.gene72477:CDS | 35.0% | |
| GACCGTATACTGATCTATTT+GGG | - | chr2.3:21960177-21960196 | None:intergenic | 35.0% | |
| GTTGCTGATATATGAGTACT+TGG | + | chr2.3:21961094-21961113 | MS.gene72477:CDS | 35.0% | |
| TAGTATTTGGCATACTTTGG+TGG | + | chr2.3:21960391-21960410 | MS.gene72477:CDS | 35.0% | |
| TCAGCTATATCAATCGAATC+TGG | + | chr2.3:21960205-21960224 | MS.gene72477:CDS | 35.0% | |
| TTCAATATTGCAGAAGAAGC+AGG | + | chr2.3:21960052-21960071 | MS.gene72477:CDS | 35.0% | |
| TTGATATCTACCTTCAGGTA+TGG | + | chr2.3:21959827-21959846 | MS.gene72477:intron | 35.0% | |
| TTGGTAAGAAAGTCGTAAGA+CGG | + | chr2.3:21960080-21960099 | MS.gene72477:CDS | 35.0% | |
| ! | AGTTTAGCTCGTGCTTTATT+TGG | + | chr2.3:21961125-21961144 | MS.gene72477:CDS | 35.0% |
| ! | ATATTGAACTCCTTTTGCAC+TGG | - | chr2.3:21960040-21960059 | None:intergenic | 35.0% |
| ! | ATTTGTGTTGGTATTGCTAG+AGG | + | chr2.3:21961324-21961343 | MS.gene72477:CDS | 35.0% |
| ! | GACCCTAAGATATCAGATTT+TGG | + | chr2.3:21961432-21961451 | MS.gene72477:CDS | 35.0% |
| ! | GTAAACATCCCTTCATTTTG+AGG | - | chr2.3:21960926-21960945 | None:intergenic | 35.0% |
| ! | TAAGAGCATACCTTCAAACT+TGG | - | chr2.3:21960552-21960571 | None:intergenic | 35.0% |
| !! | TAAGATTGGATTGGTCAACA+AGG | + | chr2.3:21961295-21961314 | MS.gene72477:CDS | 35.0% |
| AAGACTGAAGGTTGTTCACA+GGG | + | chr2.3:21961371-21961390 | MS.gene72477:CDS | 40.0% | |
| AAGATTGGAGAAGGAGGATT+TGG | + | chr2.3:21960810-21960829 | MS.gene72477:CDS | 40.0% | |
| AATATTGCAGAAGAAGCAGG+AGG | + | chr2.3:21960055-21960074 | MS.gene72477:CDS | 40.0% | |
| ACTGCTATCAATGACCCATT+GGG | - | chr2.3:21960948-21960967 | None:intergenic | 40.0% | |
| ATGAAGGGATGTTTACCCAA+TGG | + | chr2.3:21960930-21960949 | MS.gene72477:intron | 40.0% | |
| ATGCTCACTAGGTTCCTATA+GGG | + | chr2.3:21959961-21959980 | MS.gene72477:intron | 40.0% | |
| CACATTAGCACTAGAATTGC+TGG | + | chr2.3:21961486-21961505 | MS.gene72477:CDS | 40.0% | |
| CCATGAAGAATCAAGACTGA+AGG | + | chr2.3:21961359-21961378 | MS.gene72477:CDS | 40.0% | |
| CCTTATCTTGTTAGACTCCA+CGG | + | chr2.3:21961047-21961066 | MS.gene72477:CDS | 40.0% | |
| CCTTCAGTCTTGATTCTTCA+TGG | - | chr2.3:21961362-21961381 | None:intergenic | 40.0% | |
| CGTGGAGTCTAACAAGATAA+GGG | - | chr2.3:21961049-21961068 | None:intergenic | 40.0% | |
| GCTATATCAATCGAATCTGG+TGG | + | chr2.3:21960208-21960227 | MS.gene72477:intron | 40.0% | |
| GGACCGTATACTGATCTATT+TGG | - | chr2.3:21960178-21960197 | None:intergenic | 40.0% | |
| TAGTGTCAAACCATACCTGA+AGG | - | chr2.3:21959840-21959859 | None:intergenic | 40.0% | |
| TCAGTCTTGATTCTTCATGG+AGG | - | chr2.3:21961359-21961378 | None:intergenic | 40.0% | |
| TCCAATAAGATTGGAGAAGG+AGG | + | chr2.3:21960804-21960823 | MS.gene72477:CDS | 40.0% | |
| TCCTCCTTCTCCAATCTTAT+TGG | - | chr2.3:21960808-21960827 | None:intergenic | 40.0% | |
| TGAAGGGATGTTTACCCAAT+GGG | + | chr2.3:21960931-21960950 | MS.gene72477:intron | 40.0% | |
| TGTTGCGTAACCAAGTTTGA+AGG | + | chr2.3:21960539-21960558 | MS.gene72477:intron | 40.0% | |
| TGTTGGTATTGCTAGAGGTT+TGG | + | chr2.3:21961329-21961348 | MS.gene72477:CDS | 40.0% | |
| TTTGGAGATCCGCTTGTATT+GGG | + | chr2.3:21960129-21960148 | MS.gene72477:CDS | 40.0% | |
| TTTGGCATACTTTGGTGGAA+AGG | + | chr2.3:21960396-21960415 | MS.gene72477:CDS | 40.0% | |
| ! | CTTTGGTGGAAAGGATGTTT+TGG | + | chr2.3:21960405-21960424 | MS.gene72477:CDS | 40.0% |
| AACATGGCGATCCTAGCATA+AGG | - | chr2.3:21960256-21960275 | None:intergenic | 45.0% | |
| AACCTAGTGAGCATCACTTC+AGG | - | chr2.3:21959955-21959974 | None:intergenic | 45.0% | |
| AAGCATGTCTATAGGAGCTG+TGG | + | chr2.3:21960332-21960351 | MS.gene72477:CDS | 45.0% | |
| AATCAAGCAGATTCTCCACC+TGG | + | chr2.3:21960309-21960328 | MS.gene72477:intron | 45.0% | |
| ATGTCTATAGGAGCTGTGGT+GGG | + | chr2.3:21960336-21960355 | MS.gene72477:CDS | 45.0% | |
| CAAGACTGAAGGTTGTTCAC+AGG | + | chr2.3:21961370-21961389 | MS.gene72477:CDS | 45.0% | |
| CACGTTCCTAACCTTATGCT+AGG | + | chr2.3:21960242-21960261 | MS.gene72477:intron | 45.0% | |
| CACTGCTATCAATGACCCAT+TGG | - | chr2.3:21960949-21960968 | None:intergenic | 45.0% | |
| CCGTGGAGTCTAACAAGATA+AGG | - | chr2.3:21961050-21961069 | None:intergenic | 45.0% | |
| GATGCTCACTAGGTTCCTAT+AGG | + | chr2.3:21959960-21959979 | MS.gene72477:intron | 45.0% | |
| GTGTGTTAAGTTAGGCCCAA+TGG | - | chr2.3:21961233-21961252 | None:intergenic | 45.0% | |
| TACCTGAAGTGATGCTCACT+AGG | + | chr2.3:21959950-21959969 | MS.gene72477:intron | 45.0% | |
| TTAGGGAAAGCCAGTGCAAA+AGG | + | chr2.3:21960027-21960046 | MS.gene72477:intron | 45.0% | |
| ! | AGGATTTGGTCCCGTTTACA+AGG | + | chr2.3:21960824-21960843 | MS.gene72477:CDS | 45.0% |
| ! | CTTTGGAGATCCGCTTGTAT+TGG | + | chr2.3:21960128-21960147 | MS.gene72477:CDS | 45.0% |
| ! | CTTTTCCAGCCCAATACAAG+CGG | - | chr2.3:21960141-21960160 | None:intergenic | 45.0% |
| ! | GCTTGTATTGGGCTGGAAAA+GGG | + | chr2.3:21960140-21960159 | MS.gene72477:CDS | 45.0% |
| !! | CGAATCTGGTGGGTTATACT+TGG | + | chr2.3:21960219-21960238 | MS.gene72477:intron | 45.0% |
| ATTGTCCTCCTCGTCAAGCT+TGG | - | chr2.3:21961463-21961482 | None:intergenic | 50.0% | |
| CATGTCTATAGGAGCTGTGG+TGG | + | chr2.3:21960335-21960354 | MS.gene72477:CDS | 50.0% | |
| CCTATAGACATGCTTCCAGG+TGG | - | chr2.3:21960327-21960346 | None:intergenic | 50.0% | |
| GCTCCTATAGACATGCTTCC+AGG | - | chr2.3:21960330-21960349 | None:intergenic | 50.0% | |
| GGCGATCCTAGCATAAGGTT+AGG | - | chr2.3:21960251-21960270 | None:intergenic | 50.0% | |
| TAGACTCCACGGTTGTTGTG+TGG | + | chr2.3:21961058-21961077 | MS.gene72477:CDS | 50.0% | |
| ! | CCACCTGGAAGCATGTCTAT+AGG | + | chr2.3:21960324-21960343 | MS.gene72477:CDS | 50.0% |
| ! | CGCTTGTATTGGGCTGGAAA+AGG | + | chr2.3:21960139-21960158 | MS.gene72477:CDS | 50.0% |
| ACTCCACGGTTGTTGTGTGG+AGG | + | chr2.3:21961061-21961080 | MS.gene72477:CDS | 55.0% | |
| CTCCACGGTTGTTGTGTGGA+GGG | + | chr2.3:21961062-21961081 | MS.gene72477:CDS | 55.0% | |
| GAGATCCGCTTGTATTGGGC+TGG | + | chr2.3:21960133-21960152 | MS.gene72477:CDS | 55.0% | |
| GCAGAAGAAGCAGGAGGAGT+TGG | + | chr2.3:21960061-21960080 | MS.gene72477:CDS | 55.0% | |
| TTTGGCCAAGCTTGACGAGG+AGG | + | chr2.3:21961455-21961474 | MS.gene72477:CDS | 55.0% | |
| ! | AGGAGCTGTGGTGGGAATTG+TGG | + | chr2.3:21960344-21960363 | MS.gene72477:CDS | 55.0% |
| ! | TGGTTTGGCCAAGCTTGACG+AGG | + | chr2.3:21961452-21961471 | MS.gene72477:CDS | 55.0% |
| CTCCCTCCACACAACAACCG+TGG | - | chr2.3:21961067-21961086 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 21959782 | 21961515 | 21959782 | ID=MS.gene72477 |
| chr2.3 | mRNA | 21959782 | 21961515 | 21959782 | ID=MS.gene72477.t1;Parent=MS.gene72477 |
| chr2.3 | exon | 21959782 | 21959843 | 21959782 | ID=MS.gene72477.t1.exon1;Parent=MS.gene72477.t1 |
| chr2.3 | CDS | 21959782 | 21959843 | 21959782 | ID=cds.MS.gene72477.t1;Parent=MS.gene72477.t1 |
| chr2.3 | exon | 21960031 | 21960226 | 21960031 | ID=MS.gene72477.t1.exon2;Parent=MS.gene72477.t1 |
| chr2.3 | CDS | 21960031 | 21960226 | 21960031 | ID=cds.MS.gene72477.t1;Parent=MS.gene72477.t1 |
| chr2.3 | exon | 21960319 | 21960450 | 21960319 | ID=MS.gene72477.t1.exon3;Parent=MS.gene72477.t1 |
| chr2.3 | CDS | 21960319 | 21960450 | 21960319 | ID=cds.MS.gene72477.t1;Parent=MS.gene72477.t1 |
| chr2.3 | exon | 21960727 | 21960845 | 21960727 | ID=MS.gene72477.t1.exon4;Parent=MS.gene72477.t1 |
| chr2.3 | CDS | 21960727 | 21960845 | 21960727 | ID=cds.MS.gene72477.t1;Parent=MS.gene72477.t1 |
| chr2.3 | exon | 21960936 | 21961146 | 21960936 | ID=MS.gene72477.t1.exon5;Parent=MS.gene72477.t1 |
| chr2.3 | CDS | 21960936 | 21961146 | 21960936 | ID=cds.MS.gene72477.t1;Parent=MS.gene72477.t1 |
| chr2.3 | exon | 21961277 | 21961515 | 21961277 | ID=MS.gene72477.t1.exon6;Parent=MS.gene72477.t1 |
| chr2.3 | CDS | 21961277 | 21961515 | 21961277 | ID=cds.MS.gene72477.t1;Parent=MS.gene72477.t1 |
| Gene Sequence |
| Protein sequence |
