Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79878.t1 | XP_003601651.2 | 97.9 | 466 | 10 | 0 | 1 | 466 | 1 | 466 | 1.00E-261 | 912.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79878.t1 | Q93WX6 | 77.5 | 466 | 102 | 1 | 1 | 466 | 1 | 463 | 1.3e-204 | 713.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79878.t1 | G7JA74 | 97.9 | 466 | 10 | 0 | 1 | 466 | 1 | 466 | 7.4e-262 | 912.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049171 | MS.gene79878 | 0.829124 | 6.13E-55 | -1.69E-46 |
MS.gene049222 | MS.gene79878 | 0.814241 | 1.70E-51 | -1.69E-46 |
MS.gene049285 | MS.gene79878 | 0.830087 | 3.58E-55 | -1.69E-46 |
MS.gene049320 | MS.gene79878 | 0.810215 | 1.29E-50 | -1.69E-46 |
MS.gene049633 | MS.gene79878 | 0.839165 | 1.87E-57 | -1.69E-46 |
MS.gene050163 | MS.gene79878 | 0.817435 | 3.30E-52 | -1.69E-46 |
MS.gene050165 | MS.gene79878 | 0.840631 | 7.74E-58 | -1.69E-46 |
MS.gene050170 | MS.gene79878 | 0.834423 | 3.02E-56 | -1.69E-46 |
MS.gene050323 | MS.gene79878 | 0.834357 | 3.14E-56 | -1.69E-46 |
MS.gene050333 | MS.gene79878 | 0.852633 | 4.06E-61 | -1.69E-46 |
MS.gene050338 | MS.gene79878 | -0.857219 | 1.89E-62 | -1.69E-46 |
MS.gene050444 | MS.gene79878 | 0.831519 | 1.59E-55 | -1.69E-46 |
MS.gene050496 | MS.gene79878 | 0.83188 | 1.30E-55 | -1.69E-46 |
MS.gene050504 | MS.gene79878 | 0.825873 | 3.70E-54 | -1.69E-46 |
MS.gene050518 | MS.gene79878 | 0.809316 | 2.01E-50 | -1.69E-46 |
MS.gene050577 | MS.gene79878 | 0.816286 | 5.98E-52 | -1.69E-46 |
MS.gene050612 | MS.gene79878 | 0.850329 | 1.82E-60 | -1.69E-46 |
MS.gene050675 | MS.gene79878 | 0.809614 | 1.73E-50 | -1.69E-46 |
MS.gene050772 | MS.gene79878 | 0.803322 | 3.68E-49 | -1.69E-46 |
MS.gene05080 | MS.gene79878 | 0.800525 | 1.38E-48 | -1.69E-46 |
MS.gene050868 | MS.gene79878 | 0.812682 | 3.75E-51 | -1.69E-46 |
MS.gene050871 | MS.gene79878 | 0.808282 | 3.34E-50 | -1.69E-46 |
MS.gene050876 | MS.gene79878 | 0.881486 | 2.31E-70 | -1.69E-46 |
MS.gene050904 | MS.gene79878 | 0.873517 | 1.38E-67 | -1.69E-46 |
MS.gene050986 | MS.gene79878 | 0.802416 | 5.67E-49 | -1.69E-46 |
MS.gene051317 | MS.gene79878 | 0.839544 | 1.49E-57 | -1.69E-46 |
MS.gene051949 | MS.gene79878 | 0.830097 | 3.56E-55 | -1.69E-46 |
MS.gene052129 | MS.gene79878 | -0.83032 | 3.14E-55 | -1.69E-46 |
MS.gene052164 | MS.gene79878 | 0.802904 | 4.50E-49 | -1.69E-46 |
MS.gene052822 | MS.gene79878 | 0.80735 | 5.28E-50 | -1.69E-46 |
MS.gene052872 | MS.gene79878 | 0.81832 | 2.08E-52 | -1.69E-46 |
MS.gene052916 | MS.gene79878 | 0.807309 | 5.38E-50 | -1.69E-46 |
MS.gene052966 | MS.gene79878 | 0.806387 | 8.43E-50 | -1.69E-46 |
MS.gene053284 | MS.gene79878 | 0.840159 | 1.03E-57 | -1.69E-46 |
MS.gene053285 | MS.gene79878 | 0.824074 | 9.83E-54 | -1.69E-46 |
MS.gene053479 | MS.gene79878 | 0.80394 | 2.74E-49 | -1.69E-46 |
MS.gene053824 | MS.gene79878 | 0.823384 | 1.43E-53 | -1.69E-46 |
MS.gene053916 | MS.gene79878 | 0.809824 | 1.56E-50 | -1.69E-46 |
MS.gene05470 | MS.gene79878 | 0.823055 | 1.70E-53 | -1.69E-46 |
MS.gene054954 | MS.gene79878 | 0.827375 | 1.62E-54 | -1.69E-46 |
MS.gene055134 | MS.gene79878 | -0.802759 | 4.82E-49 | -1.69E-46 |
MS.gene055251 | MS.gene79878 | -0.824355 | 8.44E-54 | -1.69E-46 |
MS.gene055362 | MS.gene79878 | 0.811524 | 6.71E-51 | -1.69E-46 |
MS.gene055502 | MS.gene79878 | 0.812459 | 4.19E-51 | -1.69E-46 |
MS.gene055577 | MS.gene79878 | 0.830368 | 3.06E-55 | -1.69E-46 |
MS.gene055748 | MS.gene79878 | 0.888512 | 5.53E-73 | -1.69E-46 |
MS.gene055750 | MS.gene79878 | 0.880367 | 5.82E-70 | -1.69E-46 |
MS.gene055751 | MS.gene79878 | 0.903694 | 2.66E-79 | -1.69E-46 |
MS.gene055776 | MS.gene79878 | 0.840811 | 6.95E-58 | -1.69E-46 |
MS.gene055849 | MS.gene79878 | 0.843614 | 1.26E-58 | -1.69E-46 |
MS.gene05589 | MS.gene79878 | 0.851576 | 8.11E-61 | -1.69E-46 |
MS.gene056266 | MS.gene79878 | 0.810956 | 8.91E-51 | -1.69E-46 |
MS.gene056283 | MS.gene79878 | 0.810278 | 1.25E-50 | -1.69E-46 |
MS.gene056504 | MS.gene79878 | 0.839152 | 1.88E-57 | -1.69E-46 |
MS.gene056510 | MS.gene79878 | 0.812054 | 5.14E-51 | -1.69E-46 |
MS.gene056657 | MS.gene79878 | 0.809896 | 1.51E-50 | -1.69E-46 |
MS.gene056692 | MS.gene79878 | 0.861176 | 1.23E-63 | -1.69E-46 |
MS.gene057831 | MS.gene79878 | 0.808691 | 2.73E-50 | -1.69E-46 |
MS.gene057857 | MS.gene79878 | 0.807731 | 4.38E-50 | -1.69E-46 |
MS.gene058334 | MS.gene79878 | -0.813816 | 2.11E-51 | -1.69E-46 |
MS.gene058419 | MS.gene79878 | 0.815074 | 1.11E-51 | -1.69E-46 |
MS.gene058773 | MS.gene79878 | 0.832092 | 1.15E-55 | -1.69E-46 |
MS.gene058838 | MS.gene79878 | 0.845476 | 3.97E-59 | -1.69E-46 |
MS.gene059022 | MS.gene79878 | 0.819172 | 1.34E-52 | -1.69E-46 |
MS.gene059023 | MS.gene79878 | 0.836755 | 7.77E-57 | -1.69E-46 |
MS.gene059079 | MS.gene79878 | 0.867401 | 1.41E-65 | -1.69E-46 |
MS.gene05912 | MS.gene79878 | 0.800005 | 1.77E-48 | -1.69E-46 |
MS.gene059677 | MS.gene79878 | 0.829627 | 4.63E-55 | -1.69E-46 |
MS.gene059718 | MS.gene79878 | 0.801209 | 1.00E-48 | -1.69E-46 |
MS.gene059801 | MS.gene79878 | 0.808171 | 3.53E-50 | -1.69E-46 |
MS.gene059865 | MS.gene79878 | 0.821876 | 3.20E-53 | -1.69E-46 |
MS.gene06000 | MS.gene79878 | 0.820671 | 6.06E-53 | -1.69E-46 |
MS.gene060703 | MS.gene79878 | 0.825582 | 4.33E-54 | -1.69E-46 |
MS.gene060762 | MS.gene79878 | 0.863811 | 1.91E-64 | -1.69E-46 |
MS.gene06077 | MS.gene79878 | 0.812408 | 4.30E-51 | -1.69E-46 |
MS.gene060823 | MS.gene79878 | -0.800717 | 1.26E-48 | -1.69E-46 |
MS.gene060982 | MS.gene79878 | 0.861209 | 1.20E-63 | -1.69E-46 |
MS.gene061044 | MS.gene79878 | -0.812122 | 4.97E-51 | -1.69E-46 |
MS.gene061150 | MS.gene79878 | 0.825337 | 4.95E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79878.t1 | MTR_3g083980 | 97.854 | 466 | 10 | 0 | 1 | 466 | 1 | 466 | 0.0 | 943 |
MS.gene79878.t1 | MTR_3g083980 | 97.538 | 325 | 8 | 0 | 1 | 325 | 1 | 325 | 0.0 | 651 |
MS.gene79878.t1 | MTR_5g014820 | 25.258 | 388 | 257 | 9 | 77 | 453 | 56 | 421 | 1.46e-24 | 106 |
MS.gene79878.t1 | MTR_7g111540 | 24.603 | 252 | 161 | 9 | 74 | 307 | 48 | 288 | 2.26e-11 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79878.t1 | AT1G08490 | 77.253 | 466 | 103 | 1 | 1 | 466 | 1 | 463 | 0.0 | 729 |
MS.gene79878.t1 | AT5G65720 | 25.700 | 393 | 249 | 10 | 77 | 453 | 55 | 420 | 2.83e-21 | 96.7 |
MS.gene79878.t1 | AT5G65720 | 25.700 | 393 | 249 | 10 | 77 | 453 | 55 | 420 | 2.83e-21 | 96.7 |
MS.gene79878.t1 | AT5G65720 | 23.920 | 301 | 188 | 8 | 169 | 453 | 17 | 292 | 3.67e-13 | 70.9 |
Find 119 sgRNAs with CRISPR-Local
Find 317 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TACTGATCTTGCAACATTTC+TGG | 0.138943 | 3.1:-65597843 | MS.gene79878:CDS |
GGCCCATAGATGCGAATATT+TGG | 0.178379 | 3.1:+65597929 | None:intergenic |
CAACCCCTCCATCGGTATTT+AGG | 0.187810 | 3.1:-65597365 | MS.gene79878:CDS |
AACTCTTAGTTCTCCCTCTT+TGG | 0.194746 | 3.1:-65601893 | MS.gene79878:CDS |
TCCTTCAATTTGTCTATATC+TGG | 0.214976 | 3.1:+65601008 | None:intergenic |
AATGATTTCAGATGTATATT+TGG | 0.234059 | 3.1:-65599912 | MS.gene79878:CDS |
TGGATTCTTATATGGTAAAA+TGG | 0.237622 | 3.1:-65600145 | MS.gene79878:CDS |
GTCCCAAATATTCGCATCTA+TGG | 0.258743 | 3.1:-65597932 | MS.gene79878:CDS |
ACAGGCATTGGATTCTTATA+TGG | 0.290323 | 3.1:-65600153 | MS.gene79878:CDS |
TCAATCTAGTAGCTTATTCT+TGG | 0.296895 | 3.1:-65601504 | MS.gene79878:CDS |
ACTCTTAGTTCTCCCTCTTT+GGG | 0.324312 | 3.1:-65601892 | MS.gene79878:CDS |
TTACTTCCTGGTGAAGTATA+GGG | 0.324627 | 3.1:+65601848 | None:intergenic |
AACCCCTCCATCGGTATTTA+GGG | 0.335796 | 3.1:-65597364 | MS.gene79878:CDS |
AGTGATTGAACAGCAATAAC+TGG | 0.340667 | 3.1:+65602008 | None:intergenic |
GCAGCAATTGATTACTTGTC+TGG | 0.346961 | 3.1:-65599326 | MS.gene79878:CDS |
ATACTTCACCAGGAAGTAAA+TGG | 0.354665 | 3.1:-65601844 | MS.gene79878:CDS |
TTTACTTCCTGGTGAAGTAT+AGG | 0.375419 | 3.1:+65601847 | None:intergenic |
ATTGGTGAAGCAATTGGATT+AGG | 0.377119 | 3.1:-65599350 | MS.gene79878:CDS |
ATTGATTACTTGTCTGGGAT+TGG | 0.379311 | 3.1:-65599320 | MS.gene79878:CDS |
CCAGCTATTGGTGAAGCAAT+TGG | 0.385593 | 3.1:-65599356 | MS.gene79878:CDS |
CCTGGTGAAGTATAGGGAAA+TGG | 0.386768 | 3.1:+65601854 | None:intergenic |
TAACTGGGGCTTGGAAGTTT+CGG | 0.386871 | 3.1:+65602024 | None:intergenic |
CAGTGTGCAATATCTCTAAT+AGG | 0.390967 | 3.1:+65600381 | None:intergenic |
TCTGACAAGTGATGTGGTTC+TGG | 0.397087 | 3.1:+65601984 | None:intergenic |
GCCCATAGATGCGAATATTT+GGG | 0.403525 | 3.1:+65597930 | None:intergenic |
CTGGTGAAGTATAGGGAAAT+GGG | 0.406014 | 3.1:+65601855 | None:intergenic |
CTATATCTGGAATTTCATCT+TGG | 0.406188 | 3.1:+65601021 | None:intergenic |
TTACAATTCAAACGTGCATC+GGG | 0.418015 | 3.1:-65601737 | MS.gene79878:CDS |
CAATCTAGTAGCTTATTCTT+GGG | 0.419995 | 3.1:-65601503 | MS.gene79878:CDS |
GAGGCTGGAACACCAGCTAT+TGG | 0.422236 | 3.1:-65599368 | MS.gene79878:CDS |
TTGATTACTTGTCTGGGATT+GGG | 0.425333 | 3.1:-65599319 | MS.gene79878:CDS |
TTGACGGTTGATGCACGAAC+AGG | 0.429519 | 3.1:+65601934 | None:intergenic |
TTGACTTCTTTCGAAGGGGC+TGG | 0.434464 | 3.1:+65597908 | None:intergenic |
CACAAACCTGGACGGAGGTT+CGG | 0.435387 | 3.1:+65599874 | None:intergenic |
TGCAACATTTCTGGACCAAC+AGG | 0.438009 | 3.1:-65597834 | MS.gene79878:intron |
AATGCCTTCACAACAGCTGC+AGG | 0.442651 | 3.1:+65601778 | None:intergenic |
CTCGTTTGACTTCTTTCGAA+GGG | 0.444579 | 3.1:+65597903 | None:intergenic |
TTACAGATGTGTGGGCCTAC+AGG | 0.456863 | 3.1:-65600171 | MS.gene79878:intron |
TTCAGCTACTGCTTGATTGA+CGG | 0.459909 | 3.1:+65601918 | None:intergenic |
CCTTAGTGTTGTAGAAATAG+AGG | 0.461757 | 3.1:+65597318 | None:intergenic |
AAGTATAGGGAAATGGGGTC+TGG | 0.471495 | 3.1:+65601861 | None:intergenic |
TAAATACCGATGGAGGGGTT+GGG | 0.473325 | 3.1:+65597367 | None:intergenic |
CATGGAGTGGCAATCAGATC+AGG | 0.475274 | 3.1:-65597401 | MS.gene79878:CDS |
TCCAGATATAGACAAATTGA+AGG | 0.478567 | 3.1:-65601009 | MS.gene79878:CDS |
AAAATGGAGGCATGGAAGAC+AGG | 0.487304 | 3.1:+65600118 | None:intergenic |
ACCACATCACTTGTCAGACT+TGG | 0.489997 | 3.1:-65601979 | MS.gene79878:CDS |
GAACAGCAATAACTGGGGCT+TGG | 0.497888 | 3.1:+65602015 | None:intergenic |
ACTCACCTCATACTCATGTA+TGG | 0.501136 | 3.1:+65599289 | None:intergenic |
AGAAATGTTGCAAGATCAGT+AGG | 0.504435 | 3.1:+65597845 | None:intergenic |
CAGCAATTGATTACTTGTCT+GGG | 0.508847 | 3.1:-65599325 | MS.gene79878:CDS |
TACCATACTAGATTTGAGGC+TGG | 0.512947 | 3.1:-65599383 | MS.gene79878:intron |
GCAAGCCATACATGAGTATG+AGG | 0.513803 | 3.1:-65599294 | MS.gene79878:intron |
CTGACAGAAGCCTTTCATAC+AGG | 0.515663 | 3.1:+65597954 | None:intergenic |
ATGTGTGGGCCTACAGGCAT+TGG | 0.516246 | 3.1:-65600165 | MS.gene79878:CDS |
CATCATGTTTCAAATGTGCT+TGG | 0.517203 | 3.1:-65600951 | MS.gene79878:intron |
CTAAATACCGATGGAGGGGT+TGG | 0.521306 | 3.1:+65597366 | None:intergenic |
CCATTTCCCTATACTTCACC+AGG | 0.523096 | 3.1:-65601854 | MS.gene79878:CDS |
GATATTGCACACTGGGCACA+TGG | 0.530497 | 3.1:-65600372 | MS.gene79878:CDS |
TCCCAAATATTCGCATCTAT+GGG | 0.531604 | 3.1:-65597931 | MS.gene79878:CDS |
CCAATTGCTTCACCAATAGC+TGG | 0.533136 | 3.1:+65599356 | None:intergenic |
GTGATTGAACAGCAATAACT+GGG | 0.535039 | 3.1:+65602009 | None:intergenic |
GCACACTGGGCACATGGGGT+TGG | 0.536529 | 3.1:-65600366 | MS.gene79878:CDS |
GAACAGGGAGATAAGTTAAA+CGG | 0.538325 | 3.1:+65601950 | None:intergenic |
TGAACATCAACCACCATGTG+TGG | 0.542670 | 3.1:+65600309 | None:intergenic |
GTTACAATTCAAACGTGCAT+CGG | 0.544500 | 3.1:-65601738 | MS.gene79878:CDS |
CTTATGCCGAACCTCCGTCC+AGG | 0.545005 | 3.1:-65599880 | MS.gene79878:intron |
GGAAATGGGGTCTGGTAGTG+TGG | 0.550619 | 3.1:+65601869 | None:intergenic |
TGGGTACATACCTGTATGAA+AGG | 0.550622 | 3.1:-65597964 | MS.gene79878:CDS |
GCATTGCAAGACTATTATGA+AGG | 0.553126 | 3.1:-65601760 | MS.gene79878:CDS |
TATTAGAGATATTGCACACT+GGG | 0.555135 | 3.1:-65600379 | MS.gene79878:CDS |
CCTCTATTTCTACAACACTA+AGG | 0.555763 | 3.1:-65597318 | MS.gene79878:CDS |
TCTTGTTGCTTCTTCTCACA+AGG | 0.556164 | 3.1:-65600268 | MS.gene79878:intron |
AATCTAGTAGCTTATTCTTG+GGG | 0.557727 | 3.1:-65601502 | MS.gene79878:CDS |
CAACAAGAAAATCAGCATCA+AGG | 0.558160 | 3.1:+65600283 | None:intergenic |
AGAAGTTGACCGTGTCATGA+AGG | 0.561968 | 3.1:+65597270 | None:intergenic |
GAAGTTGACCGTGTCATGAA+GGG | 0.567742 | 3.1:+65597271 | None:intergenic |
GAAGCCTGCAGCTGTTGTGA+AGG | 0.567977 | 3.1:-65601782 | MS.gene79878:CDS |
GCTCGTTTGACTTCTTTCGA+AGG | 0.577103 | 3.1:+65597902 | None:intergenic |
CTGGTAGTGTGGCCCAAAGA+GGG | 0.578324 | 3.1:+65601880 | None:intergenic |
TGACCCCTAAATACCGATGG+AGG | 0.582901 | 3.1:+65597360 | None:intergenic |
ACCCCTAAATACCGATGGAG+GGG | 0.591422 | 3.1:+65597362 | None:intergenic |
CATGTGTGGAACACTCTGGC+AGG | 0.593828 | 3.1:+65600323 | None:intergenic |
GGCTTGTCAAATTTAAAACA+AGG | 0.594239 | 3.1:-65601481 | MS.gene79878:CDS |
GACCCCTAAATACCGATGGA+GGG | 0.595603 | 3.1:+65597361 | None:intergenic |
ATCACAGCGCAATTGTTCCA+TGG | 0.596198 | 3.1:-65601094 | MS.gene79878:CDS |
CTGCCAGAGTGTTCCACACA+TGG | 0.600132 | 3.1:-65600322 | MS.gene79878:CDS |
TCTGGTAGTGTGGCCCAAAG+AGG | 0.600966 | 3.1:+65601879 | None:intergenic |
TGACCGTGTCATGAAGGGCA+TGG | 0.603142 | 3.1:+65597276 | None:intergenic |
CATTGACCCCTAAATACCGA+TGG | 0.603227 | 3.1:+65597357 | None:intergenic |
TATCCATGCCCTTCATGACA+CGG | 0.605173 | 3.1:-65597279 | MS.gene79878:CDS |
TCGTTTGACTTCTTTCGAAG+GGG | 0.606212 | 3.1:+65597904 | None:intergenic |
AACCTGTCTTACAGATGTGT+GGG | 0.606697 | 3.1:-65600179 | MS.gene79878:intron |
GAACCTGTCTTACAGATGTG+TGG | 0.607400 | 3.1:-65600180 | MS.gene79878:intron |
ATTGTGCCCAACCCCTCCAT+CGG | 0.607814 | 3.1:-65597373 | MS.gene79878:CDS |
AAAGAGGGAGAACTAAGAGT+TGG | 0.613517 | 3.1:+65601895 | None:intergenic |
TATTGCACACTGGGCACATG+GGG | 0.615050 | 3.1:-65600370 | MS.gene79878:CDS |
CCACCATGTGTGGAACACTC+TGG | 0.619780 | 3.1:+65600319 | None:intergenic |
TGACGGTTGATGCACGAACA+GGG | 0.628972 | 3.1:+65601935 | None:intergenic |
GATGGAGGGGTTGGGCACAA+TGG | 0.630626 | 3.1:+65597375 | None:intergenic |
AAATTTAAAACAAGGAGATG+AGG | 0.633993 | 3.1:-65601473 | MS.gene79878:intron |
TATTTATGGATGTAGTGCAA+AGG | 0.635359 | 3.1:-65601626 | MS.gene79878:intron |
CTATTAGAGATATTGCACAC+TGG | 0.643145 | 3.1:-65600380 | MS.gene79878:CDS |
ATATTGCACACTGGGCACAT+GGG | 0.643244 | 3.1:-65600371 | MS.gene79878:CDS |
GCCAAGTCTGACAAGTGATG+TGG | 0.644516 | 3.1:+65601978 | None:intergenic |
AGCTGATTCATACTCGTCTG+TGG | 0.647061 | 3.1:+65601603 | None:intergenic |
ACGAGTATGAATCAGCTAGA+CGG | 0.649988 | 3.1:-65601597 | MS.gene79878:CDS |
ATCGGGGCATACATTACTTG+AGG | 0.654297 | 3.1:-65601720 | MS.gene79878:intron |
TGGTGAAGTATAGGGAAATG+GGG | 0.664059 | 3.1:+65601856 | None:intergenic |
TATAAGAATCCAATGCCTGT+AGG | 0.671673 | 3.1:+65600156 | None:intergenic |
GTATGAATCAGCTAGACGGA+AGG | 0.672338 | 3.1:-65601593 | MS.gene79878:CDS |
ACCCCTCCATCGGTATTTAG+GGG | 0.674227 | 3.1:-65597363 | MS.gene79878:CDS |
CTATTTCTACAACACTAAGG+AGG | 0.678567 | 3.1:-65597315 | MS.gene79878:CDS |
GAAATGTTGCAAGATCAGTA+GGG | 0.688737 | 3.1:+65597846 | None:intergenic |
ATGGAGGCATGGAAGACAGG+AGG | 0.692069 | 3.1:+65600121 | None:intergenic |
CCAGAGTGTTCCACACATGG+TGG | 0.696122 | 3.1:-65600319 | MS.gene79878:CDS |
AAGTTCACAAACCTGGACGG+AGG | 0.708907 | 3.1:+65599869 | None:intergenic |
TACAATTCAAACGTGCATCG+GGG | 0.710508 | 3.1:-65601736 | MS.gene79878:CDS |
CAGGGAGATAAGTTAAACGG+CGG | 0.749242 | 3.1:+65601953 | None:intergenic |
TGATTGAACAGCAATAACTG+GGG | 0.771247 | 3.1:+65602010 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAAACAATTTTTTATGAAAA+AGG | - | chr3.1:65601552-65601571 | MS.gene79878:CDS | 10.0% |
!!! | TTATTCATAAACTTTTATAT+AGG | - | chr3.1:65601637-65601656 | MS.gene79878:intron | 10.0% |
!! | AAAACAAAATCTTATTAACA+TGG | + | chr3.1:65599306-65599325 | None:intergenic | 15.0% |
!! | ATCATGTTTAAAAATTTAGA+TGG | + | chr3.1:65597944-65597963 | None:intergenic | 15.0% |
!! | ATCTTAAAAATGATATACAT+TGG | - | chr3.1:65599472-65599491 | MS.gene79878:intron | 15.0% |
!! | GGTTATATTAAATTTAGAAA+AGG | + | chr3.1:65599775-65599794 | None:intergenic | 15.0% |
!! | TATAATAACTTACCTAAAAA+TGG | + | chr3.1:65599193-65599212 | None:intergenic | 15.0% |
!! | TCATGTTTAAAAATTTAGAT+GGG | + | chr3.1:65597943-65597962 | None:intergenic | 15.0% |
!!! | ATTATTGTGTTTGTTAAATT+TGG | - | chr3.1:65597600-65597619 | MS.gene79878:intron | 15.0% |
!!! | TGTATATCATTTTTAAGATA+AGG | + | chr3.1:65599471-65599490 | None:intergenic | 15.0% |
!! | AAAATCATTAATTTAGCTAG+TGG | + | chr3.1:65600949-65600968 | None:intergenic | 20.0% |
!! | AATGATTTCAGATGTATATT+TGG | - | chr3.1:65599380-65599399 | MS.gene79878:intron | 20.0% |
!! | AATTATAACGATAACATTGA+AGG | + | chr3.1:65600922-65600941 | None:intergenic | 20.0% |
!! | ATCAAATGTGATATTGAAAT+AGG | - | chr3.1:65598018-65598037 | MS.gene79878:intron | 20.0% |
!! | ATTATAACGATAACATTGAA+GGG | + | chr3.1:65600921-65600940 | None:intergenic | 20.0% |
!! | ATTTCCAATATTCAACTATA+AGG | - | chr3.1:65598609-65598628 | MS.gene79878:intron | 20.0% |
!! | CATGTTTAAAAATTTAGATG+GGG | + | chr3.1:65597942-65597961 | None:intergenic | 20.0% |
!! | GTATCTTATTATTATATCTG+AGG | - | chr3.1:65599880-65599899 | MS.gene79878:intron | 20.0% |
!! | TTTAGGTAAGTTATTATACA+CGG | - | chr3.1:65599195-65599214 | MS.gene79878:intron | 20.0% |
!! | TTTATGTGCACAATTATTTA+TGG | - | chr3.1:65597652-65597671 | MS.gene79878:intron | 20.0% |
!! | TTTCCAATATTCAACTATAA+GGG | - | chr3.1:65598610-65598629 | MS.gene79878:intron | 20.0% |
!!! | ACCAAGTTTAAATGTTTTTA+GGG | + | chr3.1:65598718-65598737 | None:intergenic | 20.0% |
!!! | ATTTCTCTAGAATAACTTAA+AGG | + | chr3.1:65601607-65601626 | None:intergenic | 20.0% |
!!! | TGTTAAATTTGGAATTACAT+TGG | - | chr3.1:65597611-65597630 | MS.gene79878:intron | 20.0% |
!!! | TTGTGCATATTTTTAAGATT+CGG | - | chr3.1:65597970-65597989 | MS.gene79878:CDS | 20.0% |
!!! | TTTATAGGTTTTGACATTAA+CGG | - | chr3.1:65598445-65598464 | MS.gene79878:intron | 20.0% |
!!! | TTTTACATGAGCATATTTAT+TGG | + | chr3.1:65598131-65598150 | None:intergenic | 20.0% |
! | AAAAACCATTGAAACAATTG+GGG | + | chr3.1:65598774-65598793 | None:intergenic | 25.0% |
! | AAATACAAGAATAAACCACA+GGG | + | chr3.1:65600445-65600464 | None:intergenic | 25.0% |
! | AAATCAACTAAATCATAACG+AGG | + | chr3.1:65600240-65600259 | None:intergenic | 25.0% |
! | AAGAGGATAGTAAAGTAAAT+GGG | + | chr3.1:65600121-65600140 | None:intergenic | 25.0% |
! | AAGATTCACTTCTAATCATT+TGG | - | chr3.1:65600496-65600515 | MS.gene79878:intron | 25.0% |
! | AAGTTCTATTCCTTTATGTT+TGG | - | chr3.1:65598092-65598111 | MS.gene79878:intron | 25.0% |
! | AATAACTTACCTAAAAATGG+AGG | + | chr3.1:65599190-65599209 | None:intergenic | 25.0% |
! | AATAAGTTAAAAACAACCCA+TGG | - | chr3.1:65601660-65601679 | MS.gene79878:intron | 25.0% |
! | AATATACATTAATGAGGTTG+AGG | + | chr3.1:65600871-65600890 | None:intergenic | 25.0% |
! | ACATGAACAACTAGTTAAAA+TGG | - | chr3.1:65599243-65599262 | MS.gene79878:intron | 25.0% |
! | ACCCTAAAAACATTTAAACT+TGG | - | chr3.1:65598714-65598733 | MS.gene79878:intron | 25.0% |
! | AGAAAAAATCCTGTTTGTTT+AGG | - | chr3.1:65599278-65599297 | MS.gene79878:intron | 25.0% |
! | AGATTCACTTCTAATCATTT+GGG | - | chr3.1:65600497-65600516 | MS.gene79878:intron | 25.0% |
! | ATTGACAACGATCATTTAAA+TGG | + | chr3.1:65599687-65599706 | None:intergenic | 25.0% |
! | CAATTACTACCGAAAAATTT+GGG | + | chr3.1:65601807-65601826 | None:intergenic | 25.0% |
! | GAAAAACCATTGAAACAATT+GGG | + | chr3.1:65598775-65598794 | None:intergenic | 25.0% |
! | TAAATACAAGAATAAACCAC+AGG | + | chr3.1:65600446-65600465 | None:intergenic | 25.0% |
! | TAATGACAATCCAAACATAA+AGG | + | chr3.1:65598105-65598124 | None:intergenic | 25.0% |
! | TAATTGATTACAGACTAAGA+AGG | + | chr3.1:65601776-65601795 | None:intergenic | 25.0% |
! | TAATTGTGCACATAAACATT+TGG | + | chr3.1:65597648-65597667 | None:intergenic | 25.0% |
! | TGAAAAACCATTGAAACAAT+TGG | + | chr3.1:65598776-65598795 | None:intergenic | 25.0% |
! | TGGATTCTTATATGGTAAAA+TGG | - | chr3.1:65599147-65599166 | MS.gene79878:intron | 25.0% |
! | TTACATACACTCATATAAAG+AGG | - | chr3.1:65598586-65598605 | MS.gene79878:intron | 25.0% |
! | TTATTAGGTGAAAACAATGT+AGG | - | chr3.1:65601097-65601116 | MS.gene79878:CDS | 25.0% |
! | TTGATCAAGTTAAACATTGT+CGG | + | chr3.1:65600708-65600727 | None:intergenic | 25.0% |
! | TTTATAGTCAATAAGACTGA+AGG | + | chr3.1:65600032-65600051 | None:intergenic | 25.0% |
!! | AAAAATGATATACATTGGCT+TGG | - | chr3.1:65599477-65599496 | MS.gene79878:intron | 25.0% |
!! | AAATTTAAAACAAGGAGATG+AGG | - | chr3.1:65597819-65597838 | MS.gene79878:intron | 25.0% |
!! | ACTAAATTGCCCAAATTTTT+CGG | - | chr3.1:65601795-65601814 | MS.gene79878:CDS | 25.0% |
!! | AGCTTAACTACAAGTTATTT+TGG | + | chr3.1:65600653-65600672 | None:intergenic | 25.0% |
!! | ATTTTACCATACTAGATTTG+AGG | - | chr3.1:65599905-65599924 | MS.gene79878:CDS | 25.0% |
!! | CACCAAGTTTAAATGTTTTT+AGG | + | chr3.1:65598719-65598738 | None:intergenic | 25.0% |
!! | GCTTTGAATATACATTAATG+AGG | + | chr3.1:65600877-65600896 | None:intergenic | 25.0% |
!! | TATGACATCCAAATTTTCAA+AGG | - | chr3.1:65601299-65601318 | MS.gene79878:intron | 25.0% |
!! | TTGGAATTACATTGGTAATT+TGG | - | chr3.1:65597619-65597638 | MS.gene79878:intron | 25.0% |
!! | TTTTGTAGCTAATACATTTC+CGG | - | chr3.1:65599322-65599341 | MS.gene79878:CDS | 25.0% |
!!! | AAAATGATATACATTGGCTT+GGG | - | chr3.1:65599478-65599497 | MS.gene79878:intron | 25.0% |
!!! | TGGTAGATCGAATAATTTTT+TGG | + | chr3.1:65599667-65599686 | None:intergenic | 25.0% |
!!! | TTTTGGTTATAGAATCCTAT+GGG | + | chr3.1:65599650-65599669 | None:intergenic | 25.0% |
!!! | TTTTTGGTTATAGAATCCTA+TGG | + | chr3.1:65599651-65599670 | None:intergenic | 25.0% |
AAAACCATTGAAACAATTGG+GGG | + | chr3.1:65598773-65598792 | None:intergenic | 30.0% | |
AAATGACTGTAGGTTATGAA+TGG | + | chr3.1:65599796-65599815 | None:intergenic | 30.0% | |
AACAAGAAAATGCATATAGC+TGG | + | chr3.1:65601505-65601524 | None:intergenic | 30.0% | |
AATCTAGTAGCTTATTCTTG+GGG | - | chr3.1:65597790-65597809 | MS.gene79878:intron | 30.0% | |
ACATCATCGAAATTCAAGAA+AGG | + | chr3.1:65601860-65601879 | None:intergenic | 30.0% | |
ACTAGTTGTTCATGTTTGAT+AGG | + | chr3.1:65599238-65599257 | None:intergenic | 30.0% | |
AGAAAACTAGAGTAATTCAC+AGG | - | chr3.1:65600051-65600070 | MS.gene79878:intron | 30.0% | |
AGAGTTTCCATTTCTTATCT+TGG | - | chr3.1:65599726-65599745 | MS.gene79878:intron | 30.0% | |
AGTCCCTTATAGTTGAATAT+TGG | + | chr3.1:65598616-65598635 | None:intergenic | 30.0% | |
AGTGTCTATGTCATGAAATA+AGG | - | chr3.1:65601729-65601748 | MS.gene79878:CDS | 30.0% | |
ATTAACTAATGACATGTCCA+TGG | + | chr3.1:65601680-65601699 | None:intergenic | 30.0% | |
CAATCAATACATTAAGTGCT+TGG | + | chr3.1:65600373-65600392 | None:intergenic | 30.0% | |
CAATCTAGTAGCTTATTCTT+GGG | - | chr3.1:65597789-65597808 | MS.gene79878:intron | 30.0% | |
CAATTAGTAGCTCAAAAAGT+TGG | - | chr3.1:65598221-65598240 | MS.gene79878:intron | 30.0% | |
CATTAGATGGTTAAGCAAAT+TGG | + | chr3.1:65600341-65600360 | None:intergenic | 30.0% | |
CCAATTACTACCGAAAAATT+TGG | + | chr3.1:65601808-65601827 | None:intergenic | 30.0% | |
CTAACACTCACTTTCTTATT+AGG | - | chr3.1:65601082-65601101 | MS.gene79878:CDS | 30.0% | |
CTAACACTTATTCTCTTGTT+GGG | + | chr3.1:65601178-65601197 | None:intergenic | 30.0% | |
CTATCATTGTGGAAAATAAG+AGG | + | chr3.1:65598807-65598826 | None:intergenic | 30.0% | |
GAAAAAAAAGTTCACAAACC+TGG | + | chr3.1:65599433-65599452 | None:intergenic | 30.0% | |
GAAGAAGTAAAACAACAATC+AGG | + | chr3.1:65600805-65600824 | None:intergenic | 30.0% | |
GAAGAGGATAGTAAAGTAAA+TGG | + | chr3.1:65600122-65600141 | None:intergenic | 30.0% | |
GAGTTTCCATTTCTTATCTT+GGG | - | chr3.1:65599727-65599746 | MS.gene79878:intron | 30.0% | |
GATACGATACAAGTAATTGA+TGG | + | chr3.1:65599865-65599884 | None:intergenic | 30.0% | |
TAAAGGAATAGAACTTCAAC+CGG | + | chr3.1:65598088-65598107 | None:intergenic | 30.0% | |
TATTAGAGATATTGCACACT+GGG | - | chr3.1:65598913-65598932 | MS.gene79878:intron | 30.0% | |
TATTTATGGATGTAGTGCAA+AGG | - | chr3.1:65597666-65597685 | MS.gene79878:intron | 30.0% | |
TATTTCATCTTCTTACCTGT+TGG | + | chr3.1:65601476-65601495 | None:intergenic | 30.0% | |
TCAATCTAGTAGCTTATTCT+TGG | - | chr3.1:65597788-65597807 | MS.gene79878:intron | 30.0% | |
TCCAGATATAGACAAATTGA+AGG | - | chr3.1:65598283-65598302 | MS.gene79878:intron | 30.0% | |
TCCTTCAATTTGTCTATATC+TGG | + | chr3.1:65598287-65598306 | None:intergenic | 30.0% | |
TCTAACACTTATTCTCTTGT+TGG | + | chr3.1:65601179-65601198 | None:intergenic | 30.0% | |
TTAACTAATGACATGTCCAT+GGG | + | chr3.1:65601679-65601698 | None:intergenic | 30.0% | |
TTGTTGGGTTAAATCAATGT+AGG | + | chr3.1:65601163-65601182 | None:intergenic | 30.0% | |
TTTGGTTATAGAATCCTATG+GGG | + | chr3.1:65599649-65599668 | None:intergenic | 30.0% | |
! | ATGATGTATCATTTTCAGCA+TGG | - | chr3.1:65601873-65601892 | MS.gene79878:CDS | 30.0% |
! | CAAAATCAGTTTTCATACAG+AGG | - | chr3.1:65601027-65601046 | MS.gene79878:CDS | 30.0% |
! | CTATATCTGGAATTTCATCT+TGG | + | chr3.1:65598274-65598293 | None:intergenic | 30.0% |
! | GAATTACATTGGTAATTTGG+AGG | - | chr3.1:65597622-65597641 | MS.gene79878:intron | 30.0% |
! | GGCTTGTCAAATTTAAAACA+AGG | - | chr3.1:65597811-65597830 | MS.gene79878:intron | 30.0% |
!! | CCAAATTTTTCGGTAGTAAT+TGG | - | chr3.1:65601805-65601824 | MS.gene79878:CDS | 30.0% |
!! | GAAATAGGAGTTTTAATACC+AGG | - | chr3.1:65598033-65598052 | MS.gene79878:intron | 30.0% |
!! | GAGTAAAAGTACTATCATTG+TGG | + | chr3.1:65598818-65598837 | None:intergenic | 30.0% |
!! | GGTATCATCTTTTGAAAATC+TGG | - | chr3.1:65600311-65600330 | MS.gene79878:CDS | 30.0% |
!! | TTGGCTTTATTGTCATTAGA+TGG | + | chr3.1:65600354-65600373 | None:intergenic | 30.0% |
!!! | ATGTTTGGATTAGCGTATTT+TGG | - | chr3.1:65597885-65597904 | MS.gene79878:CDS | 30.0% |
AAAAAATTAGCACTGTGAGG+CGG | + | chr3.1:65599823-65599842 | None:intergenic | 35.0% | |
AAAAAGTTCACAAACCTGGA+CGG | + | chr3.1:65599429-65599448 | None:intergenic | 35.0% | |
AAAGGAATAGAACTTCAACC+GGG | + | chr3.1:65598087-65598106 | None:intergenic | 35.0% | |
AGAAATGTTGCAAGATCAGT+AGG | + | chr3.1:65601450-65601469 | None:intergenic | 35.0% | |
AGCAAAAAATTAGCACTGTG+AGG | + | chr3.1:65599826-65599845 | None:intergenic | 35.0% | |
AGTGATTGAACAGCAATAAC+TGG | + | chr3.1:65597287-65597306 | None:intergenic | 35.0% | |
ATACTTCACCAGGAAGTAAA+TGG | - | chr3.1:65597448-65597467 | MS.gene79878:intron | 35.0% | |
ATCAGTCCCAAGATAAGAAA+TGG | + | chr3.1:65599736-65599755 | None:intergenic | 35.0% | |
ATTGGAATAGCTGTTGAACT+TGG | - | chr3.1:65601823-65601842 | MS.gene79878:CDS | 35.0% | |
ATTGGTGAAGCAATTGGATT+AGG | - | chr3.1:65599942-65599961 | MS.gene79878:intron | 35.0% | |
CAACAAGAAAATCAGCATCA+AGG | + | chr3.1:65599012-65599031 | None:intergenic | 35.0% | |
CAACAATCAGGATGACAAAA+TGG | + | chr3.1:65600793-65600812 | None:intergenic | 35.0% | |
CAGCAATTGATTACTTGTCT+GGG | - | chr3.1:65599967-65599986 | MS.gene79878:intron | 35.0% | |
CAGTGTGCAATATCTCTAAT+AGG | + | chr3.1:65598914-65598933 | None:intergenic | 35.0% | |
CATCATGTTTCAAATGTGCT+TGG | - | chr3.1:65598341-65598360 | MS.gene79878:intron | 35.0% | |
CCTTAGTGTTGTAGAAATAG+AGG | + | chr3.1:65601977-65601996 | None:intergenic | 35.0% | |
CTATTAGAGATATTGCACAC+TGG | - | chr3.1:65598912-65598931 | MS.gene79878:intron | 35.0% | |
GAAAGTTTCTGTATTCGTAC+TGG | + | chr3.1:65598529-65598548 | None:intergenic | 35.0% | |
GAAATGTTGCAAGATCAGTA+GGG | + | chr3.1:65601449-65601468 | None:intergenic | 35.0% | |
GAACAGGGAGATAAGTTAAA+CGG | + | chr3.1:65597345-65597364 | None:intergenic | 35.0% | |
GCATTGCAAGACTATTATGA+AGG | - | chr3.1:65597532-65597551 | MS.gene79878:intron | 35.0% | |
GTGATTGAACAGCAATAACT+GGG | + | chr3.1:65597286-65597305 | None:intergenic | 35.0% | |
GTTACAATTCAAACGTGCAT+CGG | - | chr3.1:65597554-65597573 | MS.gene79878:intron | 35.0% | |
TACTGATCTTGCAACATTTC+TGG | - | chr3.1:65601449-65601468 | MS.gene79878:intron | 35.0% | |
TACTTTACTATCCTCTTCTG+TGG | - | chr3.1:65600124-65600143 | MS.gene79878:CDS | 35.0% | |
TAGGTCCTACTACTTTATGT+GGG | - | chr3.1:65601116-65601135 | MS.gene79878:CDS | 35.0% | |
TATAAGAATCCAATGCCTGT+AGG | + | chr3.1:65599139-65599158 | None:intergenic | 35.0% | |
TATTGGGTCTCAATATGCAT+AGG | + | chr3.1:65598685-65598704 | None:intergenic | 35.0% | |
TCAAAAGATGATACCCATGA+AGG | + | chr3.1:65600306-65600325 | None:intergenic | 35.0% | |
TCCCAAATATTCGCATCTAT+GGG | - | chr3.1:65601361-65601380 | MS.gene79878:intron | 35.0% | |
TGATTGAACAGCAATAACTG+GGG | + | chr3.1:65597285-65597304 | None:intergenic | 35.0% | |
TTACAATTCAAACGTGCATC+GGG | - | chr3.1:65597555-65597574 | MS.gene79878:intron | 35.0% | |
TTACTTCCTGGTGAAGTATA+GGG | + | chr3.1:65597447-65597466 | None:intergenic | 35.0% | |
TTTACTTCCTGGTGAAGTAT+AGG | + | chr3.1:65597448-65597467 | None:intergenic | 35.0% | |
! | AAATTTTCAAAGGTCGAGCT+GGG | - | chr3.1:65601309-65601328 | MS.gene79878:intron | 35.0% |
! | ATTGATTACTTGTCTGGGAT+TGG | - | chr3.1:65599972-65599991 | MS.gene79878:intron | 35.0% |
! | CATGTTTGCTAAGTACTAGT+CGG | + | chr3.1:65598657-65598676 | None:intergenic | 35.0% |
! | TTGATTACTTGTCTGGGATT+GGG | - | chr3.1:65599973-65599992 | MS.gene79878:intron | 35.0% |
! | TTTTCATACAGAGGATTGCT+AGG | - | chr3.1:65601036-65601055 | MS.gene79878:CDS | 35.0% |
! | TTTTGACATTAACGGTCTTC+TGG | - | chr3.1:65598453-65598472 | MS.gene79878:intron | 35.0% |
! | TTTTGAGCTACTAATTGCCA+TGG | + | chr3.1:65598218-65598237 | None:intergenic | 35.0% |
!! | ACAGGCATTGGATTCTTATA+TGG | - | chr3.1:65599139-65599158 | MS.gene79878:intron | 35.0% |
!! | ATAGGAGTTTTAATACCAGG+AGG | - | chr3.1:65598036-65598055 | MS.gene79878:intron | 35.0% |
!! | ATTGGTATTTTGAACCCCAT+AGG | - | chr3.1:65599632-65599651 | MS.gene79878:intron | 35.0% |
!! | ATTTCAACTTGCTGCATGTT+TGG | - | chr3.1:65597870-65597889 | MS.gene79878:CDS | 35.0% |
!! | CCTCTATTTCTACAACACTA+AGG | - | chr3.1:65601974-65601993 | MS.gene79878:CDS | 35.0% |
!! | CTATTTCTACAACACTAAGG+AGG | - | chr3.1:65601977-65601996 | MS.gene79878:CDS | 35.0% |
!! | TGAAGCTTTTTCTCCTTCAT+GGG | - | chr3.1:65600290-65600309 | MS.gene79878:CDS | 35.0% |
!! | TTAAGATTCGGAGAGTGTTA+AGG | - | chr3.1:65597982-65598001 | MS.gene79878:intron | 35.0% |
!!! | AAATGTTTTTAGGGTCACGT+TGG | + | chr3.1:65598709-65598728 | None:intergenic | 35.0% |
!!! | AATGTTTTTAGGGTCACGTT+GGG | + | chr3.1:65598708-65598727 | None:intergenic | 35.0% |
AAAGAGGGAGAACTAAGAGT+TGG | + | chr3.1:65597400-65597419 | None:intergenic | 40.0% | |
AAAGCTTCAGCATCTACAGA+AGG | + | chr3.1:65600279-65600298 | None:intergenic | 40.0% | |
AACATGGTGCCTAAACAAAC+AGG | + | chr3.1:65599290-65599309 | None:intergenic | 40.0% | |
AACCTGTCTTACAGATGTGT+GGG | - | chr3.1:65599113-65599132 | MS.gene79878:intron | 40.0% | |
ACCTATAAAGTTAACCCAGC+AGG | + | chr3.1:65598434-65598453 | None:intergenic | 40.0% | |
ACGAGTATGAATCAGCTAGA+CGG | - | chr3.1:65597695-65597714 | MS.gene79878:intron | 40.0% | |
ACTCACCTCATACTCATGTA+TGG | + | chr3.1:65600006-65600025 | None:intergenic | 40.0% | |
AGAAAGCTGAAGAGGATCAA+TGG | - | chr3.1:65599534-65599553 | MS.gene79878:intron | 40.0% | |
CAGAAGCTACAGAAAAGCAA+AGG | + | chr3.1:65598886-65598905 | None:intergenic | 40.0% | |
CCTGAAACAAGCAAAAGATG+AGG | + | chr3.1:65599351-65599370 | None:intergenic | 40.0% | |
CTGGTGAAGTATAGGGAAAT+GGG | + | chr3.1:65597440-65597459 | None:intergenic | 40.0% | |
CTTACCTAAAAATGGAGGCA+TGG | + | chr3.1:65599185-65599204 | None:intergenic | 40.0% | |
GAATAGCTGTTGAACTTGGT+TGG | - | chr3.1:65601827-65601846 | MS.gene79878:CDS | 40.0% | |
GCAGCAATTGATTACTTGTC+TGG | - | chr3.1:65599966-65599985 | MS.gene79878:intron | 40.0% | |
GCCCATAGATGCGAATATTT+GGG | + | chr3.1:65601365-65601384 | None:intergenic | 40.0% | |
GTAGGTCCTACTACTTTATG+TGG | - | chr3.1:65601115-65601134 | MS.gene79878:CDS | 40.0% | |
GTCCCAAATATTCGCATCTA+TGG | - | chr3.1:65601360-65601379 | MS.gene79878:intron | 40.0% | |
TAATACCAGGAGGAGACATT+GGG | - | chr3.1:65598046-65598065 | MS.gene79878:intron | 40.0% | |
TACAATTCAAACGTGCATCG+GGG | - | chr3.1:65597556-65597575 | MS.gene79878:intron | 40.0% | |
TCAGCTTTCTTTCCTACACA+GGG | + | chr3.1:65599524-65599543 | None:intergenic | 40.0% | |
TGATCGTTGTCAATATCAGC+CGG | - | chr3.1:65599693-65599712 | MS.gene79878:intron | 40.0% | |
TGGCTCTTGATGTTAGTCAT+TGG | - | chr3.1:65599614-65599633 | MS.gene79878:intron | 40.0% | |
TGGGTACATACCTGTATGAA+AGG | - | chr3.1:65601328-65601347 | MS.gene79878:intron | 40.0% | |
TGGTGAAGTATAGGGAAATG+GGG | + | chr3.1:65597439-65597458 | None:intergenic | 40.0% | |
TGTAGGAAAGAAAGCTGAAG+AGG | - | chr3.1:65599526-65599545 | MS.gene79878:intron | 40.0% | |
TTAATACCAGGAGGAGACAT+TGG | - | chr3.1:65598045-65598064 | MS.gene79878:intron | 40.0% | |
TTATCTTGGGACTGATACTC+TGG | - | chr3.1:65599740-65599759 | MS.gene79878:intron | 40.0% | |
TTCAGCATCTACAGAAGGTA+TGG | + | chr3.1:65600274-65600293 | None:intergenic | 40.0% | |
TTCAGCTACTGCTTGATTGA+CGG | + | chr3.1:65597377-65597396 | None:intergenic | 40.0% | |
TTCAGCTTTCTTTCCTACAC+AGG | + | chr3.1:65599525-65599544 | None:intergenic | 40.0% | |
TTCCAGCCTCAAATCTAGTA+TGG | + | chr3.1:65599914-65599933 | None:intergenic | 40.0% | |
TTCTAATCATTTGGGAGCTG+TGG | - | chr3.1:65600505-65600524 | MS.gene79878:intron | 40.0% | |
TTGAATCAACGTTGCATCGA+GGG | - | chr3.1:65598494-65598513 | MS.gene79878:intron | 40.0% | |
! | AACTCTTAGTTCTCCCTCTT+TGG | - | chr3.1:65597399-65597418 | MS.gene79878:CDS | 40.0% |
! | ACTCTTAGTTCTCCCTCTTT+GGG | - | chr3.1:65597400-65597419 | MS.gene79878:CDS | 40.0% |
! | AGAATAAACCACAGGGTGTT+TGG | + | chr3.1:65600438-65600457 | None:intergenic | 40.0% |
! | AGGTCCAGCACTTTGAAAAT+GGG | + | chr3.1:65601143-65601162 | None:intergenic | 40.0% |
! | CAAATTTTCAAAGGTCGAGC+TGG | - | chr3.1:65601308-65601327 | MS.gene79878:intron | 40.0% |
! | CAGCTCGACCTTTGAAAATT+TGG | + | chr3.1:65601310-65601329 | None:intergenic | 40.0% |
! | CATCTTTTGCTTGTTTCAGG+CGG | - | chr3.1:65599351-65599370 | MS.gene79878:CDS | 40.0% |
! | CCTCATCTTTTGCTTGTTTC+AGG | - | chr3.1:65599348-65599367 | MS.gene79878:CDS | 40.0% |
! | CTCGTTTGACTTCTTTCGAA+GGG | + | chr3.1:65601392-65601411 | None:intergenic | 40.0% |
! | GTATCATTTTCAGCATGGAG+TGG | - | chr3.1:65601878-65601897 | MS.gene79878:CDS | 40.0% |
! | TACAGAAGGTATGGCATTTG+AGG | + | chr3.1:65600265-65600284 | None:intergenic | 40.0% |
! | TACCATACTAGATTTGAGGC+TGG | - | chr3.1:65599909-65599928 | MS.gene79878:CDS | 40.0% |
! | TAGGTCCAGCACTTTGAAAA+TGG | + | chr3.1:65601144-65601163 | None:intergenic | 40.0% |
! | TCGTTTGACTTCTTTCGAAG+GGG | + | chr3.1:65601391-65601410 | None:intergenic | 40.0% |
! | TCTTGTTGCTTCTTCTCACA+AGG | - | chr3.1:65599024-65599043 | MS.gene79878:intron | 40.0% |
!! | AGTAACTTGTTACACTGGTC+TGG | + | chr3.1:65599092-65599111 | None:intergenic | 40.0% |
!! | ATGATATACATTGGCTTGGG+TGG | - | chr3.1:65599481-65599500 | MS.gene79878:intron | 40.0% |
!! | CTGAAGCTTTTTCTCCTTCA+TGG | - | chr3.1:65600289-65600308 | MS.gene79878:CDS | 40.0% |
!! | GGTTCAGTAACTTGTTACAC+TGG | + | chr3.1:65599097-65599116 | None:intergenic | 40.0% |
!! | GTTTTGAGCCATTTACTTCC+TGG | + | chr3.1:65597459-65597478 | None:intergenic | 40.0% |
!! | TCTTCCATGCCTCCATTTTT+AGG | - | chr3.1:65599178-65599197 | MS.gene79878:intron | 40.0% |
AACAATTGGGGGCTGAAATG+AGG | + | chr3.1:65598762-65598781 | None:intergenic | 45.0% | |
AACCCCTCCATCGGTATTTA+GGG | - | chr3.1:65601928-65601947 | MS.gene79878:CDS | 45.0% | |
AAGTATAGGGAAATGGGGTC+TGG | + | chr3.1:65597434-65597453 | None:intergenic | 45.0% | |
AATACCAGGAGGAGACATTG+GGG | - | chr3.1:65598047-65598066 | MS.gene79878:intron | 45.0% | |
ACAGGTTTGATTCCCTGTGT+AGG | - | chr3.1:65599509-65599528 | MS.gene79878:intron | 45.0% | |
ACCACATCACTTGTCAGACT+TGG | - | chr3.1:65597313-65597332 | MS.gene79878:CDS | 45.0% | |
AGAAGTTGACCGTGTCATGA+AGG | + | chr3.1:65602025-65602044 | None:intergenic | 45.0% | |
AGGCGGAGAAAAATGACTGT+AGG | + | chr3.1:65599806-65599825 | None:intergenic | 45.0% | |
ATATTGCACACTGGGCACAT+GGG | - | chr3.1:65598921-65598940 | MS.gene79878:intron | 45.0% | |
ATCACAGCGCAATTGTTCCA+TGG | - | chr3.1:65598198-65598217 | MS.gene79878:intron | 45.0% | |
ATCGGGGCATACATTACTTG+AGG | - | chr3.1:65597572-65597591 | MS.gene79878:intron | 45.0% | |
ATCGTTGTCAATATCAGCCG+GGG | - | chr3.1:65599695-65599714 | MS.gene79878:intron | 45.0% | |
ATGAGATGTCACCACAGAAG+AGG | + | chr3.1:65600138-65600157 | None:intergenic | 45.0% | |
CAAGCAAAAGATGAGGTTGC+CGG | + | chr3.1:65599344-65599363 | None:intergenic | 45.0% | |
CAGGGAGATAAGTTAAACGG+CGG | + | chr3.1:65597342-65597361 | None:intergenic | 45.0% | |
CATTGACCCCTAAATACCGA+TGG | + | chr3.1:65601938-65601957 | None:intergenic | 45.0% | |
CCAATTGCTTCACCAATAGC+TGG | + | chr3.1:65599939-65599958 | None:intergenic | 45.0% | |
CCAGCTATTGGTGAAGCAAT+TGG | - | chr3.1:65599936-65599955 | MS.gene79878:intron | 45.0% | |
CCATTTCCCTATACTTCACC+AGG | - | chr3.1:65597438-65597457 | MS.gene79878:intron | 45.0% | |
CCTGGTGAAGTATAGGGAAA+TGG | + | chr3.1:65597441-65597460 | None:intergenic | 45.0% | |
CTGACAGAAGCCTTTCATAC+AGG | + | chr3.1:65601341-65601360 | None:intergenic | 45.0% | |
CTTGAATCAACGTTGCATCG+AGG | - | chr3.1:65598493-65598512 | MS.gene79878:intron | 45.0% | |
GAACCTGTCTTACAGATGTG+TGG | - | chr3.1:65599112-65599131 | MS.gene79878:intron | 45.0% | |
GAAGTTGACCGTGTCATGAA+GGG | + | chr3.1:65602024-65602043 | None:intergenic | 45.0% | |
GATCGTTGTCAATATCAGCC+GGG | - | chr3.1:65599694-65599713 | MS.gene79878:intron | 45.0% | |
GCAAGCCATACATGAGTATG+AGG | - | chr3.1:65599998-65600017 | MS.gene79878:intron | 45.0% | |
GCCTGCTGGGTTAACTTTAT+AGG | - | chr3.1:65598430-65598449 | MS.gene79878:intron | 45.0% | |
GGCCCATAGATGCGAATATT+TGG | + | chr3.1:65601366-65601385 | None:intergenic | 45.0% | |
GTATGAATCAGCTAGACGGA+AGG | - | chr3.1:65597699-65597718 | MS.gene79878:intron | 45.0% | |
GTCAAAGATATCTGCCTGCT+GGG | - | chr3.1:65598417-65598436 | MS.gene79878:intron | 45.0% | |
TAAATACCGATGGAGGGGTT+GGG | + | chr3.1:65601928-65601947 | None:intergenic | 45.0% | |
TAACTGGGGCTTGGAAGTTT+CGG | + | chr3.1:65597271-65597290 | None:intergenic | 45.0% | |
TATCCATGCCCTTCATGACA+CGG | - | chr3.1:65602013-65602032 | MS.gene79878:CDS | 45.0% | |
TCAATATCAGCCGGGGAAAA+AGG | - | chr3.1:65599702-65599721 | MS.gene79878:intron | 45.0% | |
TCAGCCCCCAATTGTTTCAA+TGG | - | chr3.1:65598766-65598785 | MS.gene79878:intron | 45.0% | |
TCTGACAAGTGATGTGGTTC+TGG | + | chr3.1:65597311-65597330 | None:intergenic | 45.0% | |
TGAACATCAACCACCATGTG+TGG | + | chr3.1:65598986-65599005 | None:intergenic | 45.0% | |
TGACTAACATCAAGAGCCAG+AGG | + | chr3.1:65599613-65599632 | None:intergenic | 45.0% | |
TGCTTGGTATGTTTCTCGTC+AGG | - | chr3.1:65598357-65598376 | MS.gene79878:intron | 45.0% | |
TGGGTCCCACATAAAGTAGT+AGG | + | chr3.1:65601124-65601143 | None:intergenic | 45.0% | |
TGTCAAAGATATCTGCCTGC+TGG | - | chr3.1:65598416-65598435 | MS.gene79878:intron | 45.0% | |
TTAGGGTCACGTTGGGTATT+GGG | + | chr3.1:65598701-65598720 | None:intergenic | 45.0% | |
! | AAAATGGAGGCATGGAAGAC+AGG | + | chr3.1:65599177-65599196 | None:intergenic | 45.0% |
! | AGCTGATTCATACTCGTCTG+TGG | + | chr3.1:65597692-65597711 | None:intergenic | 45.0% |
! | GCTCGTTTGACTTCTTTCGA+AGG | + | chr3.1:65601393-65601412 | None:intergenic | 45.0% |
! | GGAAACTCTTCCTTTTTCCC+CGG | + | chr3.1:65599715-65599734 | None:intergenic | 45.0% |
! | TGCAACATTTCTGGACCAAC+AGG | - | chr3.1:65601458-65601477 | MS.gene79878:intron | 45.0% |
! | TGTTACACTGGTCTGGAATC+TGG | + | chr3.1:65599085-65599104 | None:intergenic | 45.0% |
! | TTTAGGGTCACGTTGGGTAT+TGG | + | chr3.1:65598702-65598721 | None:intergenic | 45.0% |
!! | ATATACATTGGCTTGGGTGG+AGG | - | chr3.1:65599484-65599503 | MS.gene79878:intron | 45.0% |
AAGTTCACAAACCTGGACGG+AGG | + | chr3.1:65599426-65599445 | None:intergenic | 50.0% | |
AATGCCTTCACAACAGCTGC+AGG | + | chr3.1:65597517-65597536 | None:intergenic | 50.0% | |
ACCCCTAAATACCGATGGAG+GGG | + | chr3.1:65601933-65601952 | None:intergenic | 50.0% | |
ACCCCTCCATCGGTATTTAG+GGG | - | chr3.1:65601929-65601948 | MS.gene79878:CDS | 50.0% | |
ATACCAGGAGGAGACATTGG+GGG | - | chr3.1:65598048-65598067 | MS.gene79878:intron | 50.0% | |
CAACCCCTCCATCGGTATTT+AGG | - | chr3.1:65601927-65601946 | MS.gene79878:CDS | 50.0% | |
CATGCAGTTGAGTCACTTCC+AGG | - | chr3.1:65600399-65600418 | MS.gene79878:intron | 50.0% | |
CATGGAGTGGCAATCAGATC+AGG | - | chr3.1:65601891-65601910 | MS.gene79878:CDS | 50.0% | |
CGTTTCTCCTTCACTTCCTC+TGG | - | chr3.1:65599594-65599613 | MS.gene79878:intron | 50.0% | |
CTAAATACCGATGGAGGGGT+TGG | + | chr3.1:65601929-65601948 | None:intergenic | 50.0% | |
GAACAGCAATAACTGGGGCT+TGG | + | chr3.1:65597280-65597299 | None:intergenic | 50.0% | |
GACCCCTAAATACCGATGGA+GGG | + | chr3.1:65601934-65601953 | None:intergenic | 50.0% | |
GATATTGCACACTGGGCACA+TGG | - | chr3.1:65598920-65598939 | MS.gene79878:intron | 50.0% | |
GCCAAGTCTGACAAGTGATG+TGG | + | chr3.1:65597317-65597336 | None:intergenic | 50.0% | |
GGGGGTTCTCTTTAATCACC+CGG | - | chr3.1:65598066-65598085 | MS.gene79878:intron | 50.0% | |
TATTGCACACTGGGCACATG+GGG | - | chr3.1:65598922-65598941 | MS.gene79878:intron | 50.0% | |
TCAAGAGCCAGAGGAAGTGA+AGG | + | chr3.1:65599604-65599623 | None:intergenic | 50.0% | |
TCTTGGGACTGATACTCTGG+TGG | - | chr3.1:65599743-65599762 | MS.gene79878:intron | 50.0% | |
TGACCCCTAAATACCGATGG+AGG | + | chr3.1:65601935-65601954 | None:intergenic | 50.0% | |
TTACAGATGTGTGGGCCTAC+AGG | - | chr3.1:65599121-65599140 | MS.gene79878:intron | 50.0% | |
TTGACTTCTTTCGAAGGGGC+TGG | + | chr3.1:65601387-65601406 | None:intergenic | 50.0% | |
! | CATTGAAGGGCACAGAGACT+AGG | + | chr3.1:65600908-65600927 | None:intergenic | 50.0% |
! | CTTTTGCTTGTTTCAGGCGG+TGG | - | chr3.1:65599354-65599373 | MS.gene79878:CDS | 50.0% |
! | GGGACCCATTTTCAAAGTGC+TGG | - | chr3.1:65601136-65601155 | MS.gene79878:intron | 50.0% |
! | TGACGGTTGATGCACGAACA+GGG | + | chr3.1:65597360-65597379 | None:intergenic | 50.0% |
! | TTGACGGTTGATGCACGAAC+AGG | + | chr3.1:65597361-65597380 | None:intergenic | 50.0% |
!! | TTTGGCTCTCGGATATGTCC+TGG | + | chr3.1:65600420-65600439 | None:intergenic | 50.0% |
ATGTGTGGGCCTACAGGCAT+TGG | - | chr3.1:65599127-65599146 | MS.gene79878:intron | 55.0% | |
ATTGTGCCCAACCCCTCCAT+CGG | - | chr3.1:65601919-65601938 | MS.gene79878:CDS | 55.0% | |
CACAAACCTGGACGGAGGTT+CGG | + | chr3.1:65599421-65599440 | None:intergenic | 55.0% | |
CATGTGTGGAACACTCTGGC+AGG | + | chr3.1:65598972-65598991 | None:intergenic | 55.0% | |
CCACCATGTGTGGAACACTC+TGG | + | chr3.1:65598976-65598995 | None:intergenic | 55.0% | |
GAAGCCTGCAGCTGTTGTGA+AGG | - | chr3.1:65597510-65597529 | MS.gene79878:intron | 55.0% | |
GAGGCTGGAACACCAGCTAT+TGG | - | chr3.1:65599924-65599943 | MS.gene79878:CDS | 55.0% | |
GGCCCACACATCTGTAAGAC+AGG | + | chr3.1:65599118-65599137 | None:intergenic | 55.0% | |
TGACCGTGTCATGAAGGGCA+TGG | + | chr3.1:65602019-65602038 | None:intergenic | 55.0% | |
! | ATGGAGGCATGGAAGACAGG+AGG | + | chr3.1:65599174-65599193 | None:intergenic | 55.0% |
! | CCAGAGTGTTCCACACATGG+TGG | - | chr3.1:65598973-65598992 | MS.gene79878:intron | 55.0% |
! | CTGCCAGAGTGTTCCACACA+TGG | - | chr3.1:65598970-65598989 | MS.gene79878:intron | 55.0% |
! | CTGGTAGTGTGGCCCAAAGA+GGG | + | chr3.1:65597415-65597434 | None:intergenic | 55.0% |
! | GGAAATGGGGTCTGGTAGTG+TGG | + | chr3.1:65597426-65597445 | None:intergenic | 55.0% |
! | TCTGGTAGTGTGGCCCAAAG+AGG | + | chr3.1:65597416-65597435 | None:intergenic | 55.0% |
!! | ACCACAGGGTGTTTGGCTCT+CGG | + | chr3.1:65600431-65600450 | None:intergenic | 55.0% |
CTTATGCCGAACCTCCGTCC+AGG | - | chr3.1:65599412-65599431 | MS.gene79878:intron | 60.0% | |
GAACCCCCAATGTCTCCTCC+TGG | + | chr3.1:65598054-65598073 | None:intergenic | 60.0% | |
GATGGAGGGGTTGGGCACAA+TGG | + | chr3.1:65601920-65601939 | None:intergenic | 60.0% | |
TCCGAGAGCCAAACACCCTG+TGG | - | chr3.1:65600427-65600446 | MS.gene79878:intron | 60.0% | |
!! | TTGGCTTGGGTGGAGGTCAC+AGG | - | chr3.1:65599491-65599510 | MS.gene79878:intron | 60.0% |
GCACACTGGGCACATGGGGT+TGG | - | chr3.1:65598926-65598945 | MS.gene79878:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 65597253 | 65602061 | 65597253 | ID=MS.gene79878 |
chr3.1 | mRNA | 65597253 | 65602061 | 65597253 | ID=MS.gene79878.t1;Parent=MS.gene79878 |
chr3.1 | exon | 65601721 | 65602061 | 65601721 | ID=MS.gene79878.t1.exon1;Parent=MS.gene79878.t1 |
chr3.1 | CDS | 65601721 | 65602061 | 65601721 | ID=cds.MS.gene79878.t1;Parent=MS.gene79878.t1 |
chr3.1 | exon | 65601474 | 65601633 | 65601474 | ID=MS.gene79878.t1.exon2;Parent=MS.gene79878.t1 |
chr3.1 | CDS | 65601474 | 65601633 | 65601474 | ID=cds.MS.gene79878.t1;Parent=MS.gene79878.t1 |
chr3.1 | exon | 65600952 | 65601138 | 65600952 | ID=MS.gene79878.t1.exon3;Parent=MS.gene79878.t1 |
chr3.1 | CDS | 65600952 | 65601138 | 65600952 | ID=cds.MS.gene79878.t1;Parent=MS.gene79878.t1 |
chr3.1 | exon | 65600269 | 65600414 | 65600269 | ID=MS.gene79878.t1.exon4;Parent=MS.gene79878.t1 |
chr3.1 | CDS | 65600269 | 65600414 | 65600269 | ID=cds.MS.gene79878.t1;Parent=MS.gene79878.t1 |
chr3.1 | exon | 65600115 | 65600187 | 65600115 | ID=MS.gene79878.t1.exon5;Parent=MS.gene79878.t1 |
chr3.1 | CDS | 65600115 | 65600187 | 65600115 | ID=cds.MS.gene79878.t1;Parent=MS.gene79878.t1 |
chr3.1 | exon | 65599881 | 65599944 | 65599881 | ID=MS.gene79878.t1.exon6;Parent=MS.gene79878.t1 |
chr3.1 | CDS | 65599881 | 65599944 | 65599881 | ID=cds.MS.gene79878.t1;Parent=MS.gene79878.t1 |
chr3.1 | exon | 65599295 | 65599394 | 65599295 | ID=MS.gene79878.t1.exon7;Parent=MS.gene79878.t1 |
chr3.1 | CDS | 65599295 | 65599394 | 65599295 | ID=cds.MS.gene79878.t1;Parent=MS.gene79878.t1 |
chr3.1 | exon | 65597835 | 65597993 | 65597835 | ID=MS.gene79878.t1.exon8;Parent=MS.gene79878.t1 |
chr3.1 | CDS | 65597835 | 65597993 | 65597835 | ID=cds.MS.gene79878.t1;Parent=MS.gene79878.t1 |
chr3.1 | exon | 65597253 | 65597423 | 65597253 | ID=MS.gene79878.t1.exon9;Parent=MS.gene79878.t1 |
chr3.1 | CDS | 65597253 | 65597423 | 65597253 | ID=cds.MS.gene79878.t1;Parent=MS.gene79878.t1 |
Gene Sequence |
Protein sequence |