AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene79878


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79878.t1 MTR_3g083980 97.854 466 10 0 1 466 1 466 0.0 943
MS.gene79878.t1 MTR_3g083980 97.538 325 8 0 1 325 1 325 0.0 651
MS.gene79878.t1 MTR_5g014820 25.258 388 257 9 77 453 56 421 1.46e-24 106
MS.gene79878.t1 MTR_7g111540 24.603 252 161 9 74 307 48 288 2.26e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79878.t1 AT1G08490 77.253 466 103 1 1 466 1 463 0.0 729
MS.gene79878.t1 AT5G65720 25.700 393 249 10 77 453 55 420 2.83e-21 96.7
MS.gene79878.t1 AT5G65720 25.700 393 249 10 77 453 55 420 2.83e-21 96.7
MS.gene79878.t1 AT5G65720 23.920 301 188 8 169 453 17 292 3.67e-13 70.9

Find 119 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTGATCTTGCAACATTTC+TGG 0.138943 3.1:-65597843 MS.gene79878:CDS
GGCCCATAGATGCGAATATT+TGG 0.178379 3.1:+65597929 None:intergenic
CAACCCCTCCATCGGTATTT+AGG 0.187810 3.1:-65597365 MS.gene79878:CDS
AACTCTTAGTTCTCCCTCTT+TGG 0.194746 3.1:-65601893 MS.gene79878:CDS
TCCTTCAATTTGTCTATATC+TGG 0.214976 3.1:+65601008 None:intergenic
AATGATTTCAGATGTATATT+TGG 0.234059 3.1:-65599912 MS.gene79878:CDS
TGGATTCTTATATGGTAAAA+TGG 0.237622 3.1:-65600145 MS.gene79878:CDS
GTCCCAAATATTCGCATCTA+TGG 0.258743 3.1:-65597932 MS.gene79878:CDS
ACAGGCATTGGATTCTTATA+TGG 0.290323 3.1:-65600153 MS.gene79878:CDS
TCAATCTAGTAGCTTATTCT+TGG 0.296895 3.1:-65601504 MS.gene79878:CDS
ACTCTTAGTTCTCCCTCTTT+GGG 0.324312 3.1:-65601892 MS.gene79878:CDS
TTACTTCCTGGTGAAGTATA+GGG 0.324627 3.1:+65601848 None:intergenic
AACCCCTCCATCGGTATTTA+GGG 0.335796 3.1:-65597364 MS.gene79878:CDS
AGTGATTGAACAGCAATAAC+TGG 0.340667 3.1:+65602008 None:intergenic
GCAGCAATTGATTACTTGTC+TGG 0.346961 3.1:-65599326 MS.gene79878:CDS
ATACTTCACCAGGAAGTAAA+TGG 0.354665 3.1:-65601844 MS.gene79878:CDS
TTTACTTCCTGGTGAAGTAT+AGG 0.375419 3.1:+65601847 None:intergenic
ATTGGTGAAGCAATTGGATT+AGG 0.377119 3.1:-65599350 MS.gene79878:CDS
ATTGATTACTTGTCTGGGAT+TGG 0.379311 3.1:-65599320 MS.gene79878:CDS
CCAGCTATTGGTGAAGCAAT+TGG 0.385593 3.1:-65599356 MS.gene79878:CDS
CCTGGTGAAGTATAGGGAAA+TGG 0.386768 3.1:+65601854 None:intergenic
TAACTGGGGCTTGGAAGTTT+CGG 0.386871 3.1:+65602024 None:intergenic
CAGTGTGCAATATCTCTAAT+AGG 0.390967 3.1:+65600381 None:intergenic
TCTGACAAGTGATGTGGTTC+TGG 0.397087 3.1:+65601984 None:intergenic
GCCCATAGATGCGAATATTT+GGG 0.403525 3.1:+65597930 None:intergenic
CTGGTGAAGTATAGGGAAAT+GGG 0.406014 3.1:+65601855 None:intergenic
CTATATCTGGAATTTCATCT+TGG 0.406188 3.1:+65601021 None:intergenic
TTACAATTCAAACGTGCATC+GGG 0.418015 3.1:-65601737 MS.gene79878:CDS
CAATCTAGTAGCTTATTCTT+GGG 0.419995 3.1:-65601503 MS.gene79878:CDS
GAGGCTGGAACACCAGCTAT+TGG 0.422236 3.1:-65599368 MS.gene79878:CDS
TTGATTACTTGTCTGGGATT+GGG 0.425333 3.1:-65599319 MS.gene79878:CDS
TTGACGGTTGATGCACGAAC+AGG 0.429519 3.1:+65601934 None:intergenic
TTGACTTCTTTCGAAGGGGC+TGG 0.434464 3.1:+65597908 None:intergenic
CACAAACCTGGACGGAGGTT+CGG 0.435387 3.1:+65599874 None:intergenic
TGCAACATTTCTGGACCAAC+AGG 0.438009 3.1:-65597834 MS.gene79878:intron
AATGCCTTCACAACAGCTGC+AGG 0.442651 3.1:+65601778 None:intergenic
CTCGTTTGACTTCTTTCGAA+GGG 0.444579 3.1:+65597903 None:intergenic
TTACAGATGTGTGGGCCTAC+AGG 0.456863 3.1:-65600171 MS.gene79878:intron
TTCAGCTACTGCTTGATTGA+CGG 0.459909 3.1:+65601918 None:intergenic
CCTTAGTGTTGTAGAAATAG+AGG 0.461757 3.1:+65597318 None:intergenic
AAGTATAGGGAAATGGGGTC+TGG 0.471495 3.1:+65601861 None:intergenic
TAAATACCGATGGAGGGGTT+GGG 0.473325 3.1:+65597367 None:intergenic
CATGGAGTGGCAATCAGATC+AGG 0.475274 3.1:-65597401 MS.gene79878:CDS
TCCAGATATAGACAAATTGA+AGG 0.478567 3.1:-65601009 MS.gene79878:CDS
AAAATGGAGGCATGGAAGAC+AGG 0.487304 3.1:+65600118 None:intergenic
ACCACATCACTTGTCAGACT+TGG 0.489997 3.1:-65601979 MS.gene79878:CDS
GAACAGCAATAACTGGGGCT+TGG 0.497888 3.1:+65602015 None:intergenic
ACTCACCTCATACTCATGTA+TGG 0.501136 3.1:+65599289 None:intergenic
AGAAATGTTGCAAGATCAGT+AGG 0.504435 3.1:+65597845 None:intergenic
CAGCAATTGATTACTTGTCT+GGG 0.508847 3.1:-65599325 MS.gene79878:CDS
TACCATACTAGATTTGAGGC+TGG 0.512947 3.1:-65599383 MS.gene79878:intron
GCAAGCCATACATGAGTATG+AGG 0.513803 3.1:-65599294 MS.gene79878:intron
CTGACAGAAGCCTTTCATAC+AGG 0.515663 3.1:+65597954 None:intergenic
ATGTGTGGGCCTACAGGCAT+TGG 0.516246 3.1:-65600165 MS.gene79878:CDS
CATCATGTTTCAAATGTGCT+TGG 0.517203 3.1:-65600951 MS.gene79878:intron
CTAAATACCGATGGAGGGGT+TGG 0.521306 3.1:+65597366 None:intergenic
CCATTTCCCTATACTTCACC+AGG 0.523096 3.1:-65601854 MS.gene79878:CDS
GATATTGCACACTGGGCACA+TGG 0.530497 3.1:-65600372 MS.gene79878:CDS
TCCCAAATATTCGCATCTAT+GGG 0.531604 3.1:-65597931 MS.gene79878:CDS
CCAATTGCTTCACCAATAGC+TGG 0.533136 3.1:+65599356 None:intergenic
GTGATTGAACAGCAATAACT+GGG 0.535039 3.1:+65602009 None:intergenic
GCACACTGGGCACATGGGGT+TGG 0.536529 3.1:-65600366 MS.gene79878:CDS
GAACAGGGAGATAAGTTAAA+CGG 0.538325 3.1:+65601950 None:intergenic
TGAACATCAACCACCATGTG+TGG 0.542670 3.1:+65600309 None:intergenic
GTTACAATTCAAACGTGCAT+CGG 0.544500 3.1:-65601738 MS.gene79878:CDS
CTTATGCCGAACCTCCGTCC+AGG 0.545005 3.1:-65599880 MS.gene79878:intron
GGAAATGGGGTCTGGTAGTG+TGG 0.550619 3.1:+65601869 None:intergenic
TGGGTACATACCTGTATGAA+AGG 0.550622 3.1:-65597964 MS.gene79878:CDS
GCATTGCAAGACTATTATGA+AGG 0.553126 3.1:-65601760 MS.gene79878:CDS
TATTAGAGATATTGCACACT+GGG 0.555135 3.1:-65600379 MS.gene79878:CDS
CCTCTATTTCTACAACACTA+AGG 0.555763 3.1:-65597318 MS.gene79878:CDS
TCTTGTTGCTTCTTCTCACA+AGG 0.556164 3.1:-65600268 MS.gene79878:intron
AATCTAGTAGCTTATTCTTG+GGG 0.557727 3.1:-65601502 MS.gene79878:CDS
CAACAAGAAAATCAGCATCA+AGG 0.558160 3.1:+65600283 None:intergenic
AGAAGTTGACCGTGTCATGA+AGG 0.561968 3.1:+65597270 None:intergenic
GAAGTTGACCGTGTCATGAA+GGG 0.567742 3.1:+65597271 None:intergenic
GAAGCCTGCAGCTGTTGTGA+AGG 0.567977 3.1:-65601782 MS.gene79878:CDS
GCTCGTTTGACTTCTTTCGA+AGG 0.577103 3.1:+65597902 None:intergenic
CTGGTAGTGTGGCCCAAAGA+GGG 0.578324 3.1:+65601880 None:intergenic
TGACCCCTAAATACCGATGG+AGG 0.582901 3.1:+65597360 None:intergenic
ACCCCTAAATACCGATGGAG+GGG 0.591422 3.1:+65597362 None:intergenic
CATGTGTGGAACACTCTGGC+AGG 0.593828 3.1:+65600323 None:intergenic
GGCTTGTCAAATTTAAAACA+AGG 0.594239 3.1:-65601481 MS.gene79878:CDS
GACCCCTAAATACCGATGGA+GGG 0.595603 3.1:+65597361 None:intergenic
ATCACAGCGCAATTGTTCCA+TGG 0.596198 3.1:-65601094 MS.gene79878:CDS
CTGCCAGAGTGTTCCACACA+TGG 0.600132 3.1:-65600322 MS.gene79878:CDS
TCTGGTAGTGTGGCCCAAAG+AGG 0.600966 3.1:+65601879 None:intergenic
TGACCGTGTCATGAAGGGCA+TGG 0.603142 3.1:+65597276 None:intergenic
CATTGACCCCTAAATACCGA+TGG 0.603227 3.1:+65597357 None:intergenic
TATCCATGCCCTTCATGACA+CGG 0.605173 3.1:-65597279 MS.gene79878:CDS
TCGTTTGACTTCTTTCGAAG+GGG 0.606212 3.1:+65597904 None:intergenic
AACCTGTCTTACAGATGTGT+GGG 0.606697 3.1:-65600179 MS.gene79878:intron
GAACCTGTCTTACAGATGTG+TGG 0.607400 3.1:-65600180 MS.gene79878:intron
ATTGTGCCCAACCCCTCCAT+CGG 0.607814 3.1:-65597373 MS.gene79878:CDS
AAAGAGGGAGAACTAAGAGT+TGG 0.613517 3.1:+65601895 None:intergenic
TATTGCACACTGGGCACATG+GGG 0.615050 3.1:-65600370 MS.gene79878:CDS
CCACCATGTGTGGAACACTC+TGG 0.619780 3.1:+65600319 None:intergenic
TGACGGTTGATGCACGAACA+GGG 0.628972 3.1:+65601935 None:intergenic
GATGGAGGGGTTGGGCACAA+TGG 0.630626 3.1:+65597375 None:intergenic
AAATTTAAAACAAGGAGATG+AGG 0.633993 3.1:-65601473 MS.gene79878:intron
TATTTATGGATGTAGTGCAA+AGG 0.635359 3.1:-65601626 MS.gene79878:intron
CTATTAGAGATATTGCACAC+TGG 0.643145 3.1:-65600380 MS.gene79878:CDS
ATATTGCACACTGGGCACAT+GGG 0.643244 3.1:-65600371 MS.gene79878:CDS
GCCAAGTCTGACAAGTGATG+TGG 0.644516 3.1:+65601978 None:intergenic
AGCTGATTCATACTCGTCTG+TGG 0.647061 3.1:+65601603 None:intergenic
ACGAGTATGAATCAGCTAGA+CGG 0.649988 3.1:-65601597 MS.gene79878:CDS
ATCGGGGCATACATTACTTG+AGG 0.654297 3.1:-65601720 MS.gene79878:intron
TGGTGAAGTATAGGGAAATG+GGG 0.664059 3.1:+65601856 None:intergenic
TATAAGAATCCAATGCCTGT+AGG 0.671673 3.1:+65600156 None:intergenic
GTATGAATCAGCTAGACGGA+AGG 0.672338 3.1:-65601593 MS.gene79878:CDS
ACCCCTCCATCGGTATTTAG+GGG 0.674227 3.1:-65597363 MS.gene79878:CDS
CTATTTCTACAACACTAAGG+AGG 0.678567 3.1:-65597315 MS.gene79878:CDS
GAAATGTTGCAAGATCAGTA+GGG 0.688737 3.1:+65597846 None:intergenic
ATGGAGGCATGGAAGACAGG+AGG 0.692069 3.1:+65600121 None:intergenic
CCAGAGTGTTCCACACATGG+TGG 0.696122 3.1:-65600319 MS.gene79878:CDS
AAGTTCACAAACCTGGACGG+AGG 0.708907 3.1:+65599869 None:intergenic
TACAATTCAAACGTGCATCG+GGG 0.710508 3.1:-65601736 MS.gene79878:CDS
CAGGGAGATAAGTTAAACGG+CGG 0.749242 3.1:+65601953 None:intergenic
TGATTGAACAGCAATAACTG+GGG 0.771247 3.1:+65602010 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAACAATTTTTTATGAAAA+AGG - chr3.1:65601552-65601571 MS.gene79878:CDS 10.0%
!!! TTATTCATAAACTTTTATAT+AGG - chr3.1:65601637-65601656 MS.gene79878:intron 10.0%
!! AAAACAAAATCTTATTAACA+TGG + chr3.1:65599306-65599325 None:intergenic 15.0%
!! ATCATGTTTAAAAATTTAGA+TGG + chr3.1:65597944-65597963 None:intergenic 15.0%
!! ATCTTAAAAATGATATACAT+TGG - chr3.1:65599472-65599491 MS.gene79878:intron 15.0%
!! GGTTATATTAAATTTAGAAA+AGG + chr3.1:65599775-65599794 None:intergenic 15.0%
!! TATAATAACTTACCTAAAAA+TGG + chr3.1:65599193-65599212 None:intergenic 15.0%
!! TCATGTTTAAAAATTTAGAT+GGG + chr3.1:65597943-65597962 None:intergenic 15.0%
!!! ATTATTGTGTTTGTTAAATT+TGG - chr3.1:65597600-65597619 MS.gene79878:intron 15.0%
!!! TGTATATCATTTTTAAGATA+AGG + chr3.1:65599471-65599490 None:intergenic 15.0%
!! AAAATCATTAATTTAGCTAG+TGG + chr3.1:65600949-65600968 None:intergenic 20.0%
!! AATGATTTCAGATGTATATT+TGG - chr3.1:65599380-65599399 MS.gene79878:intron 20.0%
!! AATTATAACGATAACATTGA+AGG + chr3.1:65600922-65600941 None:intergenic 20.0%
!! ATCAAATGTGATATTGAAAT+AGG - chr3.1:65598018-65598037 MS.gene79878:intron 20.0%
!! ATTATAACGATAACATTGAA+GGG + chr3.1:65600921-65600940 None:intergenic 20.0%
!! ATTTCCAATATTCAACTATA+AGG - chr3.1:65598609-65598628 MS.gene79878:intron 20.0%
!! CATGTTTAAAAATTTAGATG+GGG + chr3.1:65597942-65597961 None:intergenic 20.0%
!! GTATCTTATTATTATATCTG+AGG - chr3.1:65599880-65599899 MS.gene79878:intron 20.0%
!! TTTAGGTAAGTTATTATACA+CGG - chr3.1:65599195-65599214 MS.gene79878:intron 20.0%
!! TTTATGTGCACAATTATTTA+TGG - chr3.1:65597652-65597671 MS.gene79878:intron 20.0%
!! TTTCCAATATTCAACTATAA+GGG - chr3.1:65598610-65598629 MS.gene79878:intron 20.0%
!!! ACCAAGTTTAAATGTTTTTA+GGG + chr3.1:65598718-65598737 None:intergenic 20.0%
!!! ATTTCTCTAGAATAACTTAA+AGG + chr3.1:65601607-65601626 None:intergenic 20.0%
!!! TGTTAAATTTGGAATTACAT+TGG - chr3.1:65597611-65597630 MS.gene79878:intron 20.0%
!!! TTGTGCATATTTTTAAGATT+CGG - chr3.1:65597970-65597989 MS.gene79878:CDS 20.0%
!!! TTTATAGGTTTTGACATTAA+CGG - chr3.1:65598445-65598464 MS.gene79878:intron 20.0%
!!! TTTTACATGAGCATATTTAT+TGG + chr3.1:65598131-65598150 None:intergenic 20.0%
! AAAAACCATTGAAACAATTG+GGG + chr3.1:65598774-65598793 None:intergenic 25.0%
! AAATACAAGAATAAACCACA+GGG + chr3.1:65600445-65600464 None:intergenic 25.0%
! AAATCAACTAAATCATAACG+AGG + chr3.1:65600240-65600259 None:intergenic 25.0%
! AAGAGGATAGTAAAGTAAAT+GGG + chr3.1:65600121-65600140 None:intergenic 25.0%
! AAGATTCACTTCTAATCATT+TGG - chr3.1:65600496-65600515 MS.gene79878:intron 25.0%
! AAGTTCTATTCCTTTATGTT+TGG - chr3.1:65598092-65598111 MS.gene79878:intron 25.0%
! AATAACTTACCTAAAAATGG+AGG + chr3.1:65599190-65599209 None:intergenic 25.0%
! AATAAGTTAAAAACAACCCA+TGG - chr3.1:65601660-65601679 MS.gene79878:intron 25.0%
! AATATACATTAATGAGGTTG+AGG + chr3.1:65600871-65600890 None:intergenic 25.0%
! ACATGAACAACTAGTTAAAA+TGG - chr3.1:65599243-65599262 MS.gene79878:intron 25.0%
! ACCCTAAAAACATTTAAACT+TGG - chr3.1:65598714-65598733 MS.gene79878:intron 25.0%
! AGAAAAAATCCTGTTTGTTT+AGG - chr3.1:65599278-65599297 MS.gene79878:intron 25.0%
! AGATTCACTTCTAATCATTT+GGG - chr3.1:65600497-65600516 MS.gene79878:intron 25.0%
! ATTGACAACGATCATTTAAA+TGG + chr3.1:65599687-65599706 None:intergenic 25.0%
! CAATTACTACCGAAAAATTT+GGG + chr3.1:65601807-65601826 None:intergenic 25.0%
! GAAAAACCATTGAAACAATT+GGG + chr3.1:65598775-65598794 None:intergenic 25.0%
! TAAATACAAGAATAAACCAC+AGG + chr3.1:65600446-65600465 None:intergenic 25.0%
! TAATGACAATCCAAACATAA+AGG + chr3.1:65598105-65598124 None:intergenic 25.0%
! TAATTGATTACAGACTAAGA+AGG + chr3.1:65601776-65601795 None:intergenic 25.0%
! TAATTGTGCACATAAACATT+TGG + chr3.1:65597648-65597667 None:intergenic 25.0%
! TGAAAAACCATTGAAACAAT+TGG + chr3.1:65598776-65598795 None:intergenic 25.0%
! TGGATTCTTATATGGTAAAA+TGG - chr3.1:65599147-65599166 MS.gene79878:intron 25.0%
! TTACATACACTCATATAAAG+AGG - chr3.1:65598586-65598605 MS.gene79878:intron 25.0%
! TTATTAGGTGAAAACAATGT+AGG - chr3.1:65601097-65601116 MS.gene79878:CDS 25.0%
! TTGATCAAGTTAAACATTGT+CGG + chr3.1:65600708-65600727 None:intergenic 25.0%
! TTTATAGTCAATAAGACTGA+AGG + chr3.1:65600032-65600051 None:intergenic 25.0%
!! AAAAATGATATACATTGGCT+TGG - chr3.1:65599477-65599496 MS.gene79878:intron 25.0%
!! AAATTTAAAACAAGGAGATG+AGG - chr3.1:65597819-65597838 MS.gene79878:intron 25.0%
!! ACTAAATTGCCCAAATTTTT+CGG - chr3.1:65601795-65601814 MS.gene79878:CDS 25.0%
!! AGCTTAACTACAAGTTATTT+TGG + chr3.1:65600653-65600672 None:intergenic 25.0%
!! ATTTTACCATACTAGATTTG+AGG - chr3.1:65599905-65599924 MS.gene79878:CDS 25.0%
!! CACCAAGTTTAAATGTTTTT+AGG + chr3.1:65598719-65598738 None:intergenic 25.0%
!! GCTTTGAATATACATTAATG+AGG + chr3.1:65600877-65600896 None:intergenic 25.0%
!! TATGACATCCAAATTTTCAA+AGG - chr3.1:65601299-65601318 MS.gene79878:intron 25.0%
!! TTGGAATTACATTGGTAATT+TGG - chr3.1:65597619-65597638 MS.gene79878:intron 25.0%
!! TTTTGTAGCTAATACATTTC+CGG - chr3.1:65599322-65599341 MS.gene79878:CDS 25.0%
!!! AAAATGATATACATTGGCTT+GGG - chr3.1:65599478-65599497 MS.gene79878:intron 25.0%
!!! TGGTAGATCGAATAATTTTT+TGG + chr3.1:65599667-65599686 None:intergenic 25.0%
!!! TTTTGGTTATAGAATCCTAT+GGG + chr3.1:65599650-65599669 None:intergenic 25.0%
!!! TTTTTGGTTATAGAATCCTA+TGG + chr3.1:65599651-65599670 None:intergenic 25.0%
AAAACCATTGAAACAATTGG+GGG + chr3.1:65598773-65598792 None:intergenic 30.0%
AAATGACTGTAGGTTATGAA+TGG + chr3.1:65599796-65599815 None:intergenic 30.0%
AACAAGAAAATGCATATAGC+TGG + chr3.1:65601505-65601524 None:intergenic 30.0%
AATCTAGTAGCTTATTCTTG+GGG - chr3.1:65597790-65597809 MS.gene79878:intron 30.0%
ACATCATCGAAATTCAAGAA+AGG + chr3.1:65601860-65601879 None:intergenic 30.0%
ACTAGTTGTTCATGTTTGAT+AGG + chr3.1:65599238-65599257 None:intergenic 30.0%
AGAAAACTAGAGTAATTCAC+AGG - chr3.1:65600051-65600070 MS.gene79878:intron 30.0%
AGAGTTTCCATTTCTTATCT+TGG - chr3.1:65599726-65599745 MS.gene79878:intron 30.0%
AGTCCCTTATAGTTGAATAT+TGG + chr3.1:65598616-65598635 None:intergenic 30.0%
AGTGTCTATGTCATGAAATA+AGG - chr3.1:65601729-65601748 MS.gene79878:CDS 30.0%
ATTAACTAATGACATGTCCA+TGG + chr3.1:65601680-65601699 None:intergenic 30.0%
CAATCAATACATTAAGTGCT+TGG + chr3.1:65600373-65600392 None:intergenic 30.0%
CAATCTAGTAGCTTATTCTT+GGG - chr3.1:65597789-65597808 MS.gene79878:intron 30.0%
CAATTAGTAGCTCAAAAAGT+TGG - chr3.1:65598221-65598240 MS.gene79878:intron 30.0%
CATTAGATGGTTAAGCAAAT+TGG + chr3.1:65600341-65600360 None:intergenic 30.0%
CCAATTACTACCGAAAAATT+TGG + chr3.1:65601808-65601827 None:intergenic 30.0%
CTAACACTCACTTTCTTATT+AGG - chr3.1:65601082-65601101 MS.gene79878:CDS 30.0%
CTAACACTTATTCTCTTGTT+GGG + chr3.1:65601178-65601197 None:intergenic 30.0%
CTATCATTGTGGAAAATAAG+AGG + chr3.1:65598807-65598826 None:intergenic 30.0%
GAAAAAAAAGTTCACAAACC+TGG + chr3.1:65599433-65599452 None:intergenic 30.0%
GAAGAAGTAAAACAACAATC+AGG + chr3.1:65600805-65600824 None:intergenic 30.0%
GAAGAGGATAGTAAAGTAAA+TGG + chr3.1:65600122-65600141 None:intergenic 30.0%
GAGTTTCCATTTCTTATCTT+GGG - chr3.1:65599727-65599746 MS.gene79878:intron 30.0%
GATACGATACAAGTAATTGA+TGG + chr3.1:65599865-65599884 None:intergenic 30.0%
TAAAGGAATAGAACTTCAAC+CGG + chr3.1:65598088-65598107 None:intergenic 30.0%
TATTAGAGATATTGCACACT+GGG - chr3.1:65598913-65598932 MS.gene79878:intron 30.0%
TATTTATGGATGTAGTGCAA+AGG - chr3.1:65597666-65597685 MS.gene79878:intron 30.0%
TATTTCATCTTCTTACCTGT+TGG + chr3.1:65601476-65601495 None:intergenic 30.0%
TCAATCTAGTAGCTTATTCT+TGG - chr3.1:65597788-65597807 MS.gene79878:intron 30.0%
TCCAGATATAGACAAATTGA+AGG - chr3.1:65598283-65598302 MS.gene79878:intron 30.0%
TCCTTCAATTTGTCTATATC+TGG + chr3.1:65598287-65598306 None:intergenic 30.0%
TCTAACACTTATTCTCTTGT+TGG + chr3.1:65601179-65601198 None:intergenic 30.0%
TTAACTAATGACATGTCCAT+GGG + chr3.1:65601679-65601698 None:intergenic 30.0%
TTGTTGGGTTAAATCAATGT+AGG + chr3.1:65601163-65601182 None:intergenic 30.0%
TTTGGTTATAGAATCCTATG+GGG + chr3.1:65599649-65599668 None:intergenic 30.0%
! ATGATGTATCATTTTCAGCA+TGG - chr3.1:65601873-65601892 MS.gene79878:CDS 30.0%
! CAAAATCAGTTTTCATACAG+AGG - chr3.1:65601027-65601046 MS.gene79878:CDS 30.0%
! CTATATCTGGAATTTCATCT+TGG + chr3.1:65598274-65598293 None:intergenic 30.0%
! GAATTACATTGGTAATTTGG+AGG - chr3.1:65597622-65597641 MS.gene79878:intron 30.0%
! GGCTTGTCAAATTTAAAACA+AGG - chr3.1:65597811-65597830 MS.gene79878:intron 30.0%
!! CCAAATTTTTCGGTAGTAAT+TGG - chr3.1:65601805-65601824 MS.gene79878:CDS 30.0%
!! GAAATAGGAGTTTTAATACC+AGG - chr3.1:65598033-65598052 MS.gene79878:intron 30.0%
!! GAGTAAAAGTACTATCATTG+TGG + chr3.1:65598818-65598837 None:intergenic 30.0%
!! GGTATCATCTTTTGAAAATC+TGG - chr3.1:65600311-65600330 MS.gene79878:CDS 30.0%
!! TTGGCTTTATTGTCATTAGA+TGG + chr3.1:65600354-65600373 None:intergenic 30.0%
!!! ATGTTTGGATTAGCGTATTT+TGG - chr3.1:65597885-65597904 MS.gene79878:CDS 30.0%
AAAAAATTAGCACTGTGAGG+CGG + chr3.1:65599823-65599842 None:intergenic 35.0%
AAAAAGTTCACAAACCTGGA+CGG + chr3.1:65599429-65599448 None:intergenic 35.0%
AAAGGAATAGAACTTCAACC+GGG + chr3.1:65598087-65598106 None:intergenic 35.0%
AGAAATGTTGCAAGATCAGT+AGG + chr3.1:65601450-65601469 None:intergenic 35.0%
AGCAAAAAATTAGCACTGTG+AGG + chr3.1:65599826-65599845 None:intergenic 35.0%
AGTGATTGAACAGCAATAAC+TGG + chr3.1:65597287-65597306 None:intergenic 35.0%
ATACTTCACCAGGAAGTAAA+TGG - chr3.1:65597448-65597467 MS.gene79878:intron 35.0%
ATCAGTCCCAAGATAAGAAA+TGG + chr3.1:65599736-65599755 None:intergenic 35.0%
ATTGGAATAGCTGTTGAACT+TGG - chr3.1:65601823-65601842 MS.gene79878:CDS 35.0%
ATTGGTGAAGCAATTGGATT+AGG - chr3.1:65599942-65599961 MS.gene79878:intron 35.0%
CAACAAGAAAATCAGCATCA+AGG + chr3.1:65599012-65599031 None:intergenic 35.0%
CAACAATCAGGATGACAAAA+TGG + chr3.1:65600793-65600812 None:intergenic 35.0%
CAGCAATTGATTACTTGTCT+GGG - chr3.1:65599967-65599986 MS.gene79878:intron 35.0%
CAGTGTGCAATATCTCTAAT+AGG + chr3.1:65598914-65598933 None:intergenic 35.0%
CATCATGTTTCAAATGTGCT+TGG - chr3.1:65598341-65598360 MS.gene79878:intron 35.0%
CCTTAGTGTTGTAGAAATAG+AGG + chr3.1:65601977-65601996 None:intergenic 35.0%
CTATTAGAGATATTGCACAC+TGG - chr3.1:65598912-65598931 MS.gene79878:intron 35.0%
GAAAGTTTCTGTATTCGTAC+TGG + chr3.1:65598529-65598548 None:intergenic 35.0%
GAAATGTTGCAAGATCAGTA+GGG + chr3.1:65601449-65601468 None:intergenic 35.0%
GAACAGGGAGATAAGTTAAA+CGG + chr3.1:65597345-65597364 None:intergenic 35.0%
GCATTGCAAGACTATTATGA+AGG - chr3.1:65597532-65597551 MS.gene79878:intron 35.0%
GTGATTGAACAGCAATAACT+GGG + chr3.1:65597286-65597305 None:intergenic 35.0%
GTTACAATTCAAACGTGCAT+CGG - chr3.1:65597554-65597573 MS.gene79878:intron 35.0%
TACTGATCTTGCAACATTTC+TGG - chr3.1:65601449-65601468 MS.gene79878:intron 35.0%
TACTTTACTATCCTCTTCTG+TGG - chr3.1:65600124-65600143 MS.gene79878:CDS 35.0%
TAGGTCCTACTACTTTATGT+GGG - chr3.1:65601116-65601135 MS.gene79878:CDS 35.0%
TATAAGAATCCAATGCCTGT+AGG + chr3.1:65599139-65599158 None:intergenic 35.0%
TATTGGGTCTCAATATGCAT+AGG + chr3.1:65598685-65598704 None:intergenic 35.0%
TCAAAAGATGATACCCATGA+AGG + chr3.1:65600306-65600325 None:intergenic 35.0%
TCCCAAATATTCGCATCTAT+GGG - chr3.1:65601361-65601380 MS.gene79878:intron 35.0%
TGATTGAACAGCAATAACTG+GGG + chr3.1:65597285-65597304 None:intergenic 35.0%
TTACAATTCAAACGTGCATC+GGG - chr3.1:65597555-65597574 MS.gene79878:intron 35.0%
TTACTTCCTGGTGAAGTATA+GGG + chr3.1:65597447-65597466 None:intergenic 35.0%
TTTACTTCCTGGTGAAGTAT+AGG + chr3.1:65597448-65597467 None:intergenic 35.0%
! AAATTTTCAAAGGTCGAGCT+GGG - chr3.1:65601309-65601328 MS.gene79878:intron 35.0%
! ATTGATTACTTGTCTGGGAT+TGG - chr3.1:65599972-65599991 MS.gene79878:intron 35.0%
! CATGTTTGCTAAGTACTAGT+CGG + chr3.1:65598657-65598676 None:intergenic 35.0%
! TTGATTACTTGTCTGGGATT+GGG - chr3.1:65599973-65599992 MS.gene79878:intron 35.0%
! TTTTCATACAGAGGATTGCT+AGG - chr3.1:65601036-65601055 MS.gene79878:CDS 35.0%
! TTTTGACATTAACGGTCTTC+TGG - chr3.1:65598453-65598472 MS.gene79878:intron 35.0%
! TTTTGAGCTACTAATTGCCA+TGG + chr3.1:65598218-65598237 None:intergenic 35.0%
!! ACAGGCATTGGATTCTTATA+TGG - chr3.1:65599139-65599158 MS.gene79878:intron 35.0%
!! ATAGGAGTTTTAATACCAGG+AGG - chr3.1:65598036-65598055 MS.gene79878:intron 35.0%
!! ATTGGTATTTTGAACCCCAT+AGG - chr3.1:65599632-65599651 MS.gene79878:intron 35.0%
!! ATTTCAACTTGCTGCATGTT+TGG - chr3.1:65597870-65597889 MS.gene79878:CDS 35.0%
!! CCTCTATTTCTACAACACTA+AGG - chr3.1:65601974-65601993 MS.gene79878:CDS 35.0%
!! CTATTTCTACAACACTAAGG+AGG - chr3.1:65601977-65601996 MS.gene79878:CDS 35.0%
!! TGAAGCTTTTTCTCCTTCAT+GGG - chr3.1:65600290-65600309 MS.gene79878:CDS 35.0%
!! TTAAGATTCGGAGAGTGTTA+AGG - chr3.1:65597982-65598001 MS.gene79878:intron 35.0%
!!! AAATGTTTTTAGGGTCACGT+TGG + chr3.1:65598709-65598728 None:intergenic 35.0%
!!! AATGTTTTTAGGGTCACGTT+GGG + chr3.1:65598708-65598727 None:intergenic 35.0%
AAAGAGGGAGAACTAAGAGT+TGG + chr3.1:65597400-65597419 None:intergenic 40.0%
AAAGCTTCAGCATCTACAGA+AGG + chr3.1:65600279-65600298 None:intergenic 40.0%
AACATGGTGCCTAAACAAAC+AGG + chr3.1:65599290-65599309 None:intergenic 40.0%
AACCTGTCTTACAGATGTGT+GGG - chr3.1:65599113-65599132 MS.gene79878:intron 40.0%
ACCTATAAAGTTAACCCAGC+AGG + chr3.1:65598434-65598453 None:intergenic 40.0%
ACGAGTATGAATCAGCTAGA+CGG - chr3.1:65597695-65597714 MS.gene79878:intron 40.0%
ACTCACCTCATACTCATGTA+TGG + chr3.1:65600006-65600025 None:intergenic 40.0%
AGAAAGCTGAAGAGGATCAA+TGG - chr3.1:65599534-65599553 MS.gene79878:intron 40.0%
CAGAAGCTACAGAAAAGCAA+AGG + chr3.1:65598886-65598905 None:intergenic 40.0%
CCTGAAACAAGCAAAAGATG+AGG + chr3.1:65599351-65599370 None:intergenic 40.0%
CTGGTGAAGTATAGGGAAAT+GGG + chr3.1:65597440-65597459 None:intergenic 40.0%
CTTACCTAAAAATGGAGGCA+TGG + chr3.1:65599185-65599204 None:intergenic 40.0%
GAATAGCTGTTGAACTTGGT+TGG - chr3.1:65601827-65601846 MS.gene79878:CDS 40.0%
GCAGCAATTGATTACTTGTC+TGG - chr3.1:65599966-65599985 MS.gene79878:intron 40.0%
GCCCATAGATGCGAATATTT+GGG + chr3.1:65601365-65601384 None:intergenic 40.0%
GTAGGTCCTACTACTTTATG+TGG - chr3.1:65601115-65601134 MS.gene79878:CDS 40.0%
GTCCCAAATATTCGCATCTA+TGG - chr3.1:65601360-65601379 MS.gene79878:intron 40.0%
TAATACCAGGAGGAGACATT+GGG - chr3.1:65598046-65598065 MS.gene79878:intron 40.0%
TACAATTCAAACGTGCATCG+GGG - chr3.1:65597556-65597575 MS.gene79878:intron 40.0%
TCAGCTTTCTTTCCTACACA+GGG + chr3.1:65599524-65599543 None:intergenic 40.0%
TGATCGTTGTCAATATCAGC+CGG - chr3.1:65599693-65599712 MS.gene79878:intron 40.0%
TGGCTCTTGATGTTAGTCAT+TGG - chr3.1:65599614-65599633 MS.gene79878:intron 40.0%
TGGGTACATACCTGTATGAA+AGG - chr3.1:65601328-65601347 MS.gene79878:intron 40.0%
TGGTGAAGTATAGGGAAATG+GGG + chr3.1:65597439-65597458 None:intergenic 40.0%
TGTAGGAAAGAAAGCTGAAG+AGG - chr3.1:65599526-65599545 MS.gene79878:intron 40.0%
TTAATACCAGGAGGAGACAT+TGG - chr3.1:65598045-65598064 MS.gene79878:intron 40.0%
TTATCTTGGGACTGATACTC+TGG - chr3.1:65599740-65599759 MS.gene79878:intron 40.0%
TTCAGCATCTACAGAAGGTA+TGG + chr3.1:65600274-65600293 None:intergenic 40.0%
TTCAGCTACTGCTTGATTGA+CGG + chr3.1:65597377-65597396 None:intergenic 40.0%
TTCAGCTTTCTTTCCTACAC+AGG + chr3.1:65599525-65599544 None:intergenic 40.0%
TTCCAGCCTCAAATCTAGTA+TGG + chr3.1:65599914-65599933 None:intergenic 40.0%
TTCTAATCATTTGGGAGCTG+TGG - chr3.1:65600505-65600524 MS.gene79878:intron 40.0%
TTGAATCAACGTTGCATCGA+GGG - chr3.1:65598494-65598513 MS.gene79878:intron 40.0%
! AACTCTTAGTTCTCCCTCTT+TGG - chr3.1:65597399-65597418 MS.gene79878:CDS 40.0%
! ACTCTTAGTTCTCCCTCTTT+GGG - chr3.1:65597400-65597419 MS.gene79878:CDS 40.0%
! AGAATAAACCACAGGGTGTT+TGG + chr3.1:65600438-65600457 None:intergenic 40.0%
! AGGTCCAGCACTTTGAAAAT+GGG + chr3.1:65601143-65601162 None:intergenic 40.0%
! CAAATTTTCAAAGGTCGAGC+TGG - chr3.1:65601308-65601327 MS.gene79878:intron 40.0%
! CAGCTCGACCTTTGAAAATT+TGG + chr3.1:65601310-65601329 None:intergenic 40.0%
! CATCTTTTGCTTGTTTCAGG+CGG - chr3.1:65599351-65599370 MS.gene79878:CDS 40.0%
! CCTCATCTTTTGCTTGTTTC+AGG - chr3.1:65599348-65599367 MS.gene79878:CDS 40.0%
! CTCGTTTGACTTCTTTCGAA+GGG + chr3.1:65601392-65601411 None:intergenic 40.0%
! GTATCATTTTCAGCATGGAG+TGG - chr3.1:65601878-65601897 MS.gene79878:CDS 40.0%
! TACAGAAGGTATGGCATTTG+AGG + chr3.1:65600265-65600284 None:intergenic 40.0%
! TACCATACTAGATTTGAGGC+TGG - chr3.1:65599909-65599928 MS.gene79878:CDS 40.0%
! TAGGTCCAGCACTTTGAAAA+TGG + chr3.1:65601144-65601163 None:intergenic 40.0%
! TCGTTTGACTTCTTTCGAAG+GGG + chr3.1:65601391-65601410 None:intergenic 40.0%
! TCTTGTTGCTTCTTCTCACA+AGG - chr3.1:65599024-65599043 MS.gene79878:intron 40.0%
!! AGTAACTTGTTACACTGGTC+TGG + chr3.1:65599092-65599111 None:intergenic 40.0%
!! ATGATATACATTGGCTTGGG+TGG - chr3.1:65599481-65599500 MS.gene79878:intron 40.0%
!! CTGAAGCTTTTTCTCCTTCA+TGG - chr3.1:65600289-65600308 MS.gene79878:CDS 40.0%
!! GGTTCAGTAACTTGTTACAC+TGG + chr3.1:65599097-65599116 None:intergenic 40.0%
!! GTTTTGAGCCATTTACTTCC+TGG + chr3.1:65597459-65597478 None:intergenic 40.0%
!! TCTTCCATGCCTCCATTTTT+AGG - chr3.1:65599178-65599197 MS.gene79878:intron 40.0%
AACAATTGGGGGCTGAAATG+AGG + chr3.1:65598762-65598781 None:intergenic 45.0%
AACCCCTCCATCGGTATTTA+GGG - chr3.1:65601928-65601947 MS.gene79878:CDS 45.0%
AAGTATAGGGAAATGGGGTC+TGG + chr3.1:65597434-65597453 None:intergenic 45.0%
AATACCAGGAGGAGACATTG+GGG - chr3.1:65598047-65598066 MS.gene79878:intron 45.0%
ACAGGTTTGATTCCCTGTGT+AGG - chr3.1:65599509-65599528 MS.gene79878:intron 45.0%
ACCACATCACTTGTCAGACT+TGG - chr3.1:65597313-65597332 MS.gene79878:CDS 45.0%
AGAAGTTGACCGTGTCATGA+AGG + chr3.1:65602025-65602044 None:intergenic 45.0%
AGGCGGAGAAAAATGACTGT+AGG + chr3.1:65599806-65599825 None:intergenic 45.0%
ATATTGCACACTGGGCACAT+GGG - chr3.1:65598921-65598940 MS.gene79878:intron 45.0%
ATCACAGCGCAATTGTTCCA+TGG - chr3.1:65598198-65598217 MS.gene79878:intron 45.0%
ATCGGGGCATACATTACTTG+AGG - chr3.1:65597572-65597591 MS.gene79878:intron 45.0%
ATCGTTGTCAATATCAGCCG+GGG - chr3.1:65599695-65599714 MS.gene79878:intron 45.0%
ATGAGATGTCACCACAGAAG+AGG + chr3.1:65600138-65600157 None:intergenic 45.0%
CAAGCAAAAGATGAGGTTGC+CGG + chr3.1:65599344-65599363 None:intergenic 45.0%
CAGGGAGATAAGTTAAACGG+CGG + chr3.1:65597342-65597361 None:intergenic 45.0%
CATTGACCCCTAAATACCGA+TGG + chr3.1:65601938-65601957 None:intergenic 45.0%
CCAATTGCTTCACCAATAGC+TGG + chr3.1:65599939-65599958 None:intergenic 45.0%
CCAGCTATTGGTGAAGCAAT+TGG - chr3.1:65599936-65599955 MS.gene79878:intron 45.0%
CCATTTCCCTATACTTCACC+AGG - chr3.1:65597438-65597457 MS.gene79878:intron 45.0%
CCTGGTGAAGTATAGGGAAA+TGG + chr3.1:65597441-65597460 None:intergenic 45.0%
CTGACAGAAGCCTTTCATAC+AGG + chr3.1:65601341-65601360 None:intergenic 45.0%
CTTGAATCAACGTTGCATCG+AGG - chr3.1:65598493-65598512 MS.gene79878:intron 45.0%
GAACCTGTCTTACAGATGTG+TGG - chr3.1:65599112-65599131 MS.gene79878:intron 45.0%
GAAGTTGACCGTGTCATGAA+GGG + chr3.1:65602024-65602043 None:intergenic 45.0%
GATCGTTGTCAATATCAGCC+GGG - chr3.1:65599694-65599713 MS.gene79878:intron 45.0%
GCAAGCCATACATGAGTATG+AGG - chr3.1:65599998-65600017 MS.gene79878:intron 45.0%
GCCTGCTGGGTTAACTTTAT+AGG - chr3.1:65598430-65598449 MS.gene79878:intron 45.0%
GGCCCATAGATGCGAATATT+TGG + chr3.1:65601366-65601385 None:intergenic 45.0%
GTATGAATCAGCTAGACGGA+AGG - chr3.1:65597699-65597718 MS.gene79878:intron 45.0%
GTCAAAGATATCTGCCTGCT+GGG - chr3.1:65598417-65598436 MS.gene79878:intron 45.0%
TAAATACCGATGGAGGGGTT+GGG + chr3.1:65601928-65601947 None:intergenic 45.0%
TAACTGGGGCTTGGAAGTTT+CGG + chr3.1:65597271-65597290 None:intergenic 45.0%
TATCCATGCCCTTCATGACA+CGG - chr3.1:65602013-65602032 MS.gene79878:CDS 45.0%
TCAATATCAGCCGGGGAAAA+AGG - chr3.1:65599702-65599721 MS.gene79878:intron 45.0%
TCAGCCCCCAATTGTTTCAA+TGG - chr3.1:65598766-65598785 MS.gene79878:intron 45.0%
TCTGACAAGTGATGTGGTTC+TGG + chr3.1:65597311-65597330 None:intergenic 45.0%
TGAACATCAACCACCATGTG+TGG + chr3.1:65598986-65599005 None:intergenic 45.0%
TGACTAACATCAAGAGCCAG+AGG + chr3.1:65599613-65599632 None:intergenic 45.0%
TGCTTGGTATGTTTCTCGTC+AGG - chr3.1:65598357-65598376 MS.gene79878:intron 45.0%
TGGGTCCCACATAAAGTAGT+AGG + chr3.1:65601124-65601143 None:intergenic 45.0%
TGTCAAAGATATCTGCCTGC+TGG - chr3.1:65598416-65598435 MS.gene79878:intron 45.0%
TTAGGGTCACGTTGGGTATT+GGG + chr3.1:65598701-65598720 None:intergenic 45.0%
! AAAATGGAGGCATGGAAGAC+AGG + chr3.1:65599177-65599196 None:intergenic 45.0%
! AGCTGATTCATACTCGTCTG+TGG + chr3.1:65597692-65597711 None:intergenic 45.0%
! GCTCGTTTGACTTCTTTCGA+AGG + chr3.1:65601393-65601412 None:intergenic 45.0%
! GGAAACTCTTCCTTTTTCCC+CGG + chr3.1:65599715-65599734 None:intergenic 45.0%
! TGCAACATTTCTGGACCAAC+AGG - chr3.1:65601458-65601477 MS.gene79878:intron 45.0%
! TGTTACACTGGTCTGGAATC+TGG + chr3.1:65599085-65599104 None:intergenic 45.0%
! TTTAGGGTCACGTTGGGTAT+TGG + chr3.1:65598702-65598721 None:intergenic 45.0%
!! ATATACATTGGCTTGGGTGG+AGG - chr3.1:65599484-65599503 MS.gene79878:intron 45.0%
AAGTTCACAAACCTGGACGG+AGG + chr3.1:65599426-65599445 None:intergenic 50.0%
AATGCCTTCACAACAGCTGC+AGG + chr3.1:65597517-65597536 None:intergenic 50.0%
ACCCCTAAATACCGATGGAG+GGG + chr3.1:65601933-65601952 None:intergenic 50.0%
ACCCCTCCATCGGTATTTAG+GGG - chr3.1:65601929-65601948 MS.gene79878:CDS 50.0%
ATACCAGGAGGAGACATTGG+GGG - chr3.1:65598048-65598067 MS.gene79878:intron 50.0%
CAACCCCTCCATCGGTATTT+AGG - chr3.1:65601927-65601946 MS.gene79878:CDS 50.0%
CATGCAGTTGAGTCACTTCC+AGG - chr3.1:65600399-65600418 MS.gene79878:intron 50.0%
CATGGAGTGGCAATCAGATC+AGG - chr3.1:65601891-65601910 MS.gene79878:CDS 50.0%
CGTTTCTCCTTCACTTCCTC+TGG - chr3.1:65599594-65599613 MS.gene79878:intron 50.0%
CTAAATACCGATGGAGGGGT+TGG + chr3.1:65601929-65601948 None:intergenic 50.0%
GAACAGCAATAACTGGGGCT+TGG + chr3.1:65597280-65597299 None:intergenic 50.0%
GACCCCTAAATACCGATGGA+GGG + chr3.1:65601934-65601953 None:intergenic 50.0%
GATATTGCACACTGGGCACA+TGG - chr3.1:65598920-65598939 MS.gene79878:intron 50.0%
GCCAAGTCTGACAAGTGATG+TGG + chr3.1:65597317-65597336 None:intergenic 50.0%
GGGGGTTCTCTTTAATCACC+CGG - chr3.1:65598066-65598085 MS.gene79878:intron 50.0%
TATTGCACACTGGGCACATG+GGG - chr3.1:65598922-65598941 MS.gene79878:intron 50.0%
TCAAGAGCCAGAGGAAGTGA+AGG + chr3.1:65599604-65599623 None:intergenic 50.0%
TCTTGGGACTGATACTCTGG+TGG - chr3.1:65599743-65599762 MS.gene79878:intron 50.0%
TGACCCCTAAATACCGATGG+AGG + chr3.1:65601935-65601954 None:intergenic 50.0%
TTACAGATGTGTGGGCCTAC+AGG - chr3.1:65599121-65599140 MS.gene79878:intron 50.0%
TTGACTTCTTTCGAAGGGGC+TGG + chr3.1:65601387-65601406 None:intergenic 50.0%
! CATTGAAGGGCACAGAGACT+AGG + chr3.1:65600908-65600927 None:intergenic 50.0%
! CTTTTGCTTGTTTCAGGCGG+TGG - chr3.1:65599354-65599373 MS.gene79878:CDS 50.0%
! GGGACCCATTTTCAAAGTGC+TGG - chr3.1:65601136-65601155 MS.gene79878:intron 50.0%
! TGACGGTTGATGCACGAACA+GGG + chr3.1:65597360-65597379 None:intergenic 50.0%
! TTGACGGTTGATGCACGAAC+AGG + chr3.1:65597361-65597380 None:intergenic 50.0%
!! TTTGGCTCTCGGATATGTCC+TGG + chr3.1:65600420-65600439 None:intergenic 50.0%
ATGTGTGGGCCTACAGGCAT+TGG - chr3.1:65599127-65599146 MS.gene79878:intron 55.0%
ATTGTGCCCAACCCCTCCAT+CGG - chr3.1:65601919-65601938 MS.gene79878:CDS 55.0%
CACAAACCTGGACGGAGGTT+CGG + chr3.1:65599421-65599440 None:intergenic 55.0%
CATGTGTGGAACACTCTGGC+AGG + chr3.1:65598972-65598991 None:intergenic 55.0%
CCACCATGTGTGGAACACTC+TGG + chr3.1:65598976-65598995 None:intergenic 55.0%
GAAGCCTGCAGCTGTTGTGA+AGG - chr3.1:65597510-65597529 MS.gene79878:intron 55.0%
GAGGCTGGAACACCAGCTAT+TGG - chr3.1:65599924-65599943 MS.gene79878:CDS 55.0%
GGCCCACACATCTGTAAGAC+AGG + chr3.1:65599118-65599137 None:intergenic 55.0%
TGACCGTGTCATGAAGGGCA+TGG + chr3.1:65602019-65602038 None:intergenic 55.0%
! ATGGAGGCATGGAAGACAGG+AGG + chr3.1:65599174-65599193 None:intergenic 55.0%
! CCAGAGTGTTCCACACATGG+TGG - chr3.1:65598973-65598992 MS.gene79878:intron 55.0%
! CTGCCAGAGTGTTCCACACA+TGG - chr3.1:65598970-65598989 MS.gene79878:intron 55.0%
! CTGGTAGTGTGGCCCAAAGA+GGG + chr3.1:65597415-65597434 None:intergenic 55.0%
! GGAAATGGGGTCTGGTAGTG+TGG + chr3.1:65597426-65597445 None:intergenic 55.0%
! TCTGGTAGTGTGGCCCAAAG+AGG + chr3.1:65597416-65597435 None:intergenic 55.0%
!! ACCACAGGGTGTTTGGCTCT+CGG + chr3.1:65600431-65600450 None:intergenic 55.0%
CTTATGCCGAACCTCCGTCC+AGG - chr3.1:65599412-65599431 MS.gene79878:intron 60.0%
GAACCCCCAATGTCTCCTCC+TGG + chr3.1:65598054-65598073 None:intergenic 60.0%
GATGGAGGGGTTGGGCACAA+TGG + chr3.1:65601920-65601939 None:intergenic 60.0%
TCCGAGAGCCAAACACCCTG+TGG - chr3.1:65600427-65600446 MS.gene79878:intron 60.0%
!! TTGGCTTGGGTGGAGGTCAC+AGG - chr3.1:65599491-65599510 MS.gene79878:intron 60.0%
GCACACTGGGCACATGGGGT+TGG - chr3.1:65598926-65598945 MS.gene79878:intron 65.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 65597253 65602061 65597253 ID=MS.gene79878
chr3.1 mRNA 65597253 65602061 65597253 ID=MS.gene79878.t1;Parent=MS.gene79878
chr3.1 exon 65601721 65602061 65601721 ID=MS.gene79878.t1.exon1;Parent=MS.gene79878.t1
chr3.1 CDS 65601721 65602061 65601721 ID=cds.MS.gene79878.t1;Parent=MS.gene79878.t1
chr3.1 exon 65601474 65601633 65601474 ID=MS.gene79878.t1.exon2;Parent=MS.gene79878.t1
chr3.1 CDS 65601474 65601633 65601474 ID=cds.MS.gene79878.t1;Parent=MS.gene79878.t1
chr3.1 exon 65600952 65601138 65600952 ID=MS.gene79878.t1.exon3;Parent=MS.gene79878.t1
chr3.1 CDS 65600952 65601138 65600952 ID=cds.MS.gene79878.t1;Parent=MS.gene79878.t1
chr3.1 exon 65600269 65600414 65600269 ID=MS.gene79878.t1.exon4;Parent=MS.gene79878.t1
chr3.1 CDS 65600269 65600414 65600269 ID=cds.MS.gene79878.t1;Parent=MS.gene79878.t1
chr3.1 exon 65600115 65600187 65600115 ID=MS.gene79878.t1.exon5;Parent=MS.gene79878.t1
chr3.1 CDS 65600115 65600187 65600115 ID=cds.MS.gene79878.t1;Parent=MS.gene79878.t1
chr3.1 exon 65599881 65599944 65599881 ID=MS.gene79878.t1.exon6;Parent=MS.gene79878.t1
chr3.1 CDS 65599881 65599944 65599881 ID=cds.MS.gene79878.t1;Parent=MS.gene79878.t1
chr3.1 exon 65599295 65599394 65599295 ID=MS.gene79878.t1.exon7;Parent=MS.gene79878.t1
chr3.1 CDS 65599295 65599394 65599295 ID=cds.MS.gene79878.t1;Parent=MS.gene79878.t1
chr3.1 exon 65597835 65597993 65597835 ID=MS.gene79878.t1.exon8;Parent=MS.gene79878.t1
chr3.1 CDS 65597835 65597993 65597835 ID=cds.MS.gene79878.t1;Parent=MS.gene79878.t1
chr3.1 exon 65597253 65597423 65597253 ID=MS.gene79878.t1.exon9;Parent=MS.gene79878.t1
chr3.1 CDS 65597253 65597423 65597253 ID=cds.MS.gene79878.t1;Parent=MS.gene79878.t1
Gene Sequence

>MS.gene79878

ATGGAAGTTTTGCTGCCGAAACTTCCAAGCCCCAGTTATTGCTGTTCAATCACTACCAGAACCACATCACTTGTCAGACTTGGCTTCCGCCGTTTAACTTATCTCCCTGTTCGTGCATCAACCGTCAATCAAGCAGTAGCTGAACCAACTCTTAGTTCTCCCTCTTTGGGCCACACTACCAGACCCCATTTCCCTATACTTCACCAGGAAGTAAATGGCTCAAAACTTGTTTACATAGACAATGCAGCAACGTCTCAGAAGCCTGCAGCTGTTGTGAAGGCATTGCAAGACTATTATGAAGGTTACAATTCAAACGTGCATCGGGGCATACATTACTTGAGGTACTTATTATTGTGTTTGTTAAATTTGGAATTACATTGGTAATTTGGAGGCCAAATGTTTATGTGCACAATTATTTATGGATGTAGTGCAAAGGCCACAGACGAGTATGAATCAGCTAGACGGAAGGTTGCAGCTTTTATAAATGCTTCTGATTCACGAGAAATTGTATTCACAAGAAATGCTACTGAAGCTATCAATCTAGTAGCTTATTCTTGGGGCTTGTCAAATTTAAAACAAGGAGATGAGGTATTTTCTTTCTAGATTTTTTTTAACGAATTTCAACTTGCTGCATGTTTGGATTAGCGTATTTTGGAGAAAATAACAATTATTTTCTGAAAAATAATCCCCATCTAAATTTTTAAACATGATATTGTTTTGTGCATATTTTTAAGATTCGGAGAGTGTTAAGGCTTAATTGAATGTATCAAATGTGATATTGAAATAGGAGTTTTAATACCAGGAGGAGACATTGGGGGTTCTCTTTAATCACCCGGTTGAAGTTCTATTCCTTTATGTTTGGATTGTCATTATCTCCAATAAATATGCTCATGTAAAATCTTAACTTTTGTGTATTATTGCAGATCGTACTTACAGTTGCTGAACATCACAGCGCAATTGTTCCATGGCAATTAGTAGCTCAAAAAGTTGGAGCTGTTTTGAAATTTGTGAATTTAAACCAAGATGAAATTCCAGATATAGACAAATTGAAGGAAATGCTTTCAAAGAAGACAAAAATAGTTGTTGTTCATCATGTTTCAAATGTGCTTGGTATGTTTCTCGTCAGGATTGTACATTTTTGTGAATGATACTTTAAGTTATGCTGTCAAAGATATCTGCCTGCTGGGTTAACTTTATAGGTTTTGACATTAACGGTCTTCTGGTTCATTAGTAACTTTTGCTTGAATCAACGTTGCATCGAGGGTTGAGCACACCAGTACGAATACAGAAACTTTCAGAATAAATTTGTAAACTGATAATTACTTGATAGAGATTACATACACTCATATAAAGAGGATTTCCAATATTCAACTATAAGGGACTGCACTCATGTGAAGACTTCCGACTAGTACTTAGCAAACATGTAATGCCTATGCATATTGAGACCCAATACCCAACGTGACCCTAAAAACATTTAAACTTGGTGCTTATATCATATACATGAATCCTCATTTCAGCCCCCAATTGTTTCAATGGTTTTTCAACTTGTAACCTCTTATTTTCCACAATGATAGTACTTTTACTCACTTTTAAACTTTTAAGTGAAATGAATGAGCTTGCTTGTGTATGTCCTTTGCTTTTCTGTAGCTTCTGTTCTTCCTATTAGAGATATTGCACACTGGGCACATGGGGTTGGAGCAAAAGTTCTTGTAGATGCCTGCCAGAGTGTTCCACACATGGTGGTTGATGTTCAAAACCTTGATGCTGATTTTCTTGTTGCTTCTTCTCACAAGGTAGAGCTGTTCATGTATTTTTGAATTGTAACTCTTCCAGATTCCAGACCAGTGTAACAAGTTACTGAACCTGTCTTACAGATGTGTGGGCCTACAGGCATTGGATTCTTATATGGTAAAATGGACCTCCTGTCTTCCATGCCTCCATTTTTAGGTAAGTTATTATACACGGTGCTTTACTATTATTTTCCTATCAAACATGAACAACTAGTTAAAATGGCAATAGAATAAAAGAAAAAATCCTGTTTGTTTAGGCACCATGTTAATAAGATTTTGTTTTGTAGCTAATACATTTCCGGCAACCTCATCTTTTGCTTGTTTCAGGCGGTGGTGAAATGATTTCAGATGTATATTTGGATCATTCAACTTATGCCGAACCTCCGTCCAGGTTTGTGAACTTTTTTTTCTTTAACTCGAGCATACCTTATCTTAAAAATGATATACATTGGCTTGGGTGGAGGTCACAGGTTTGATTCCCTGTGTAGGAAAGAAAGCTGAAGAGGATCAATGGATTTACTTCTTTTGAATTAGTGCAAACATAATTTCTTCGTTTCTCCTTCACTTCCTCTGGCTCTTGATGTTAGTCATTGGTATTTTGAACCCCATAGGATTCTATAACCAAAAAATTATTCGATCTACCATTTAAATGATCGTTGTCAATATCAGCCGGGGAAAAAGGAAGAGTTTCCATTTCTTATCTTGGGACTGATACTCTGGTGGTTCACACCTTTTCTAAATTTAATATAACCATTCATAACCTACAGTCATTTTTCTCCGCCTCACAGTGCTAATTTTTTGCTACTACTGTCGCATTTACCATCAATTACTTGTATCGTATCTTATTATTATATCTGAGGCTATTTTACCATACTAGATTTGAGGCTGGAACACCAGCTATTGGTGAAGCAATTGGATTAGGAGCAGCAATTGATTACTTGTCTGGGATTGGGATGCAAGCCATACATGAGTATGAGGTGAGTTGACCTTCAGTCTTATTGACTATAAAGAAAACTAGAGTAATTCACAGGAAAAGTGATACATTAATTTTTTAAATTTAAGATACTGTGAAAAACCCATTTACTTTACTATCCTCTTCTGTGGTGACATCTCATTTAACAAGTTTTTGACAATGAAATATTATGTATATATGTGCATACATATGTGTTTTAACAAGTTTGTGATAACACAACACCTCGTTATGATTTAGTTGATTTCTCCTCAAATGCCATACCTTCTGTAGATGCTGAAGCTTTTTCTCCTTCATGGGTATCATCTTTTGAAAATCTGGAATTCCAATTTGCTTAACCATCTAATGACAATAAAGCCAAGCACTTAATGTATTGATTGCATATTCATGCAGTTGAGTCACTTCCAGGACATATCCGAGAGCCAAACACCCTGTGGTTTATTCTTGTATTTAAGTTTAACTGATAGCAAAGTGTCGAAATGCAAGATTCACTTCTAATCATTTGGGAGCTGTGGAAAGCAACATTCTACAAAACACATGTTACATAAAAACATTCTAACTGAAATTAAGCACTAAAGTTAATCATAAATACTTTTGTTGATTAAATGTACATCTAAGTAGTATGTAGTGTTAATTACCAAAATAACTTGTAGTTAAGCTTTGATAAATGCTACTGATCAGATTTTAATGCTCCGACAATGTTTAACTTGATCAAAACATGAAAAAAACAATTTAACTTGCAAAAGAAAAAGCTGAATGTGTCACAATGCTTTATTTCCATTTTGTCATCCTGATTGTTGTTTTACTTCTTCAAGTACATCTTCTCTTTATCATCACAATTTTCATGATTCGATGCCTCAACCTCATTAATGTATATTCAAAGCAATGCTATCCTAGTCTCTGTGCCCTTCAATGTTATCGTTATAATTGAAACCACTAGCTAAATTAATGATTTTCAATCTACTCAATCAATGACTTGTAACAAATACACTGTTATTTTTGTTTGCTCATCAACAAAATCAGTTTTCATACAGAGGATTGCTAGGAACACTGTTTTTTAACTCACTCTCTAACACTCACTTTCTTATTAGGTGAAAACAATGTAGGTCCTACTACTTTATGTGGGACCCATTTTCAAAGTGCTGGACCTACATTGATTTAACCCAACAAGAGAATAAGTGTTAGAGAGAATGTTAGAAAGAAAGTATTTCTAGAACTACTCTTTCATATATTTGATTAGTGATATAAATTATATTCATGTTCTACGAACTCTGTGATGTTATTTGTATGACATCCAAATTTTCAAAGGTCGAGCTGGGTACATACCTGTATGAAAGGCTTCTGTCAGTCCCAAATATTCGCATCTATGGGCCAGCCCCTTCGAAAGAAGTCAAACGAGCTTCTCTTTGTTCTTTCAATGTTGAGAATTTGCACCCTACTGATCTTGCAACATTTCTGGACCAACAGGTAAGAAGATGAAATACTATCTCCAGCTATATGCATTTTCTTGTTCTTAATACATTTTATGTTGCATTTGAGTAAACAATTTTTTATGAAAAAGGTTTGAATGAACAATTAGTTAAGTACTTATCCTTTAAGTTATTCTAGAGAAATGATTACGCACTTATTCATAAACTTTTATATAGGAATAAGTTAAAAACAACCCATGGACATGTCATTAGTTAATTTTTATAAGTGTATCTAATCATTAATACAAGTGTCTATGTCATGAAATAAGGTAAATTAAGTTTTTTCAAATACCTTCTTAGTCTGTAATCAATTACTAAATTGCCCAAATTTTTCGGTAGTAATTGGAATAGCTGTTGAACTTGGTTGGAAATTTTCCTTTCTTGAATTTCGATGATGTATCATTTTCAGCATGGAGTGGCAATCAGATCAGGTCACCATTGTGCCCAACCCCTCCATCGGTATTTAGGGGTCAATGCAAGCGCACGTGCTAGCCTCTATTTCTACAACACTAAGGAGGATGTCGACAACTTTATCCATGCCCTTCATGACACGGTCAACTTCTTCAATTCATTCAAGTAG

Protein sequence

>MS.gene79878.t1

MEVLLPKLPSPSYCCSITTRTTSLVRLGFRRLTYLPVRASTVNQAVAEPTLSSPSLGHTTRPHFPILHQEVNGSKLVYIDNAATSQKPAAVVKALQDYYEGYNSNVHRGIHYLSAKATDEYESARRKVAAFINASDSREIVFTRNATEAINLVAYSWGLSNLKQGDEIVLTVAEHHSAIVPWQLVAQKVGAVLKFVNLNQDEIPDIDKLKEMLSKKTKIVVVHHVSNVLASVLPIRDIAHWAHGVGAKVLVDACQSVPHMVVDVQNLDADFLVASSHKMCGPTGIGFLYGKMDLLSSMPPFLGGGEMISDVYLDHSTYAEPPSRFEAGTPAIGEAIGLGAAIDYLSGIGMQAIHEYEVELGTYLYERLLSVPNIRIYGPAPSKEVKRASLCSFNVENLHPTDLATFLDQQHGVAIRSGHHCAQPLHRYLGVNASARASLYFYNTKEDVDNFIHALHDTVNFFNSFK