Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84705.t1 | RHN69347.1 | 98.7 | 302 | 3 | 1 | 1 | 301 | 1 | 302 | 2.60E-149 | 538.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84705.t1 | Q940J1 | 47.1 | 312 | 136 | 11 | 1 | 301 | 1 | 294 | 8.4e-40 | 165.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84705.t1 | A0A396J2A4 | 98.7 | 302 | 3 | 1 | 1 | 301 | 1 | 302 | 1.9e-149 | 538.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene84705.t1 | TF | HB-HD-ZIP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene84705 | 0.802759 | 4.82E-49 | -1.69E-46 |
| MS.gene049254 | MS.gene84705 | 0.825879 | 3.68E-54 | -1.69E-46 |
| MS.gene049272 | MS.gene84705 | 0.820048 | 8.42E-53 | -1.69E-46 |
| MS.gene049404 | MS.gene84705 | 0.831919 | 1.27E-55 | -1.69E-46 |
| MS.gene049435 | MS.gene84705 | 0.809328 | 2.00E-50 | -1.69E-46 |
| MS.gene049501 | MS.gene84705 | 0.818638 | 1.77E-52 | -1.69E-46 |
| MS.gene049647 | MS.gene84705 | 0.813192 | 2.90E-51 | -1.69E-46 |
| MS.gene049711 | MS.gene84705 | 0.800611 | 1.33E-48 | -1.69E-46 |
| MS.gene049825 | MS.gene84705 | 0.80192 | 7.17E-49 | -1.69E-46 |
| MS.gene049850 | MS.gene84705 | 0.814973 | 1.17E-51 | -1.69E-46 |
| MS.gene050026 | MS.gene84705 | 0.804438 | 2.16E-49 | -1.69E-46 |
| MS.gene050156 | MS.gene84705 | 0.809324 | 2.00E-50 | -1.69E-46 |
| MS.gene050201 | MS.gene84705 | 0.802432 | 5.63E-49 | -1.69E-46 |
| MS.gene050237 | MS.gene84705 | 0.805404 | 1.36E-49 | -1.69E-46 |
| MS.gene050355 | MS.gene84705 | 0.808141 | 3.58E-50 | -1.69E-46 |
| MS.gene050442 | MS.gene84705 | 0.832658 | 8.33E-56 | -1.69E-46 |
| MS.gene050719 | MS.gene84705 | 0.837412 | 5.28E-57 | -1.69E-46 |
| MS.gene050721 | MS.gene84705 | 0.832352 | 9.93E-56 | -1.69E-46 |
| MS.gene050724 | MS.gene84705 | 0.80807 | 3.71E-50 | -1.69E-46 |
| MS.gene050807 | MS.gene84705 | 0.822486 | 2.31E-53 | -1.69E-46 |
| MS.gene050844 | MS.gene84705 | 0.806234 | 9.08E-50 | -1.69E-46 |
| MS.gene050959 | MS.gene84705 | 0.820949 | 5.23E-53 | -1.69E-46 |
| MS.gene051147 | MS.gene84705 | 0.818025 | 2.43E-52 | -1.69E-46 |
| MS.gene051247 | MS.gene84705 | 0.84388 | 1.07E-58 | -1.69E-46 |
| MS.gene051265 | MS.gene84705 | 0.814501 | 1.49E-51 | -1.69E-46 |
| MS.gene051279 | MS.gene84705 | 0.812224 | 4.72E-51 | -1.69E-46 |
| MS.gene051388 | MS.gene84705 | 0.816738 | 4.74E-52 | -1.69E-46 |
| MS.gene051700 | MS.gene84705 | 0.804501 | 2.10E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene84705 | 0.840288 | 9.52E-58 | -1.69E-46 |
| MS.gene051720 | MS.gene84705 | 0.823878 | 1.09E-53 | -1.69E-46 |
| MS.gene051744 | MS.gene84705 | 0.807925 | 3.98E-50 | -1.69E-46 |
| MS.gene051957 | MS.gene84705 | 0.825396 | 4.80E-54 | -1.69E-46 |
| MS.gene052012 | MS.gene84705 | 0.806424 | 8.28E-50 | -1.69E-46 |
| MS.gene052190 | MS.gene84705 | 0.821608 | 3.69E-53 | -1.69E-46 |
| MS.gene052516 | MS.gene84705 | 0.820572 | 6.39E-53 | -1.69E-46 |
| MS.gene052519 | MS.gene84705 | 0.809977 | 1.45E-50 | -1.69E-46 |
| MS.gene052582 | MS.gene84705 | 0.819225 | 1.30E-52 | -1.69E-46 |
| MS.gene052584 | MS.gene84705 | 0.806563 | 7.74E-50 | -1.69E-46 |
| MS.gene052586 | MS.gene84705 | 0.804906 | 1.72E-49 | -1.69E-46 |
| MS.gene052665 | MS.gene84705 | 0.826955 | 2.04E-54 | -1.69E-46 |
| MS.gene052773 | MS.gene84705 | 0.807683 | 4.48E-50 | -1.69E-46 |
| MS.gene053054 | MS.gene84705 | -0.815011 | 1.15E-51 | -1.69E-46 |
| MS.gene053079 | MS.gene84705 | 0.812032 | 5.20E-51 | -1.69E-46 |
| MS.gene053166 | MS.gene84705 | 0.83544 | 1.68E-56 | -1.69E-46 |
| MS.gene053221 | MS.gene84705 | 0.851226 | 1.02E-60 | -1.69E-46 |
| MS.gene053226 | MS.gene84705 | 0.827063 | 1.92E-54 | -1.69E-46 |
| MS.gene053599 | MS.gene84705 | 0.809168 | 2.16E-50 | -1.69E-46 |
| MS.gene053966 | MS.gene84705 | 0.806063 | 9.87E-50 | -1.69E-46 |
| MS.gene05415 | MS.gene84705 | 0.810187 | 1.31E-50 | -1.69E-46 |
| MS.gene054291 | MS.gene84705 | -0.825993 | 3.46E-54 | -1.69E-46 |
| MS.gene054467 | MS.gene84705 | 0.824506 | 7.78E-54 | -1.69E-46 |
| MS.gene054468 | MS.gene84705 | 0.857147 | 1.99E-62 | -1.69E-46 |
| MS.gene05462 | MS.gene84705 | 0.803089 | 4.12E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene84705 | 0.816752 | 4.70E-52 | -1.69E-46 |
| MS.gene054775 | MS.gene84705 | 0.824172 | 9.32E-54 | -1.69E-46 |
| MS.gene055356 | MS.gene84705 | 0.816267 | 6.04E-52 | -1.69E-46 |
| MS.gene055358 | MS.gene84705 | 0.817943 | 2.54E-52 | -1.69E-46 |
| MS.gene055465 | MS.gene84705 | 0.840214 | 9.95E-58 | -1.69E-46 |
| MS.gene055466 | MS.gene84705 | 0.854331 | 1.32E-61 | -1.69E-46 |
| MS.gene055468 | MS.gene84705 | 0.839291 | 1.73E-57 | -1.69E-46 |
| MS.gene055469 | MS.gene84705 | 0.80717 | 5.76E-50 | -1.69E-46 |
| MS.gene055608 | MS.gene84705 | 0.805827 | 1.11E-49 | -1.69E-46 |
| MS.gene055778 | MS.gene84705 | 0.82637 | 2.82E-54 | -1.69E-46 |
| MS.gene055818 | MS.gene84705 | 0.817181 | 3.77E-52 | -1.69E-46 |
| MS.gene055926 | MS.gene84705 | 0.808433 | 3.10E-50 | -1.69E-46 |
| MS.gene05604 | MS.gene84705 | 0.824545 | 7.62E-54 | -1.69E-46 |
| MS.gene056162 | MS.gene84705 | 0.827114 | 1.87E-54 | -1.69E-46 |
| MS.gene056173 | MS.gene84705 | 0.809721 | 1.64E-50 | -1.69E-46 |
| MS.gene056366 | MS.gene84705 | 0.806615 | 7.55E-50 | -1.69E-46 |
| MS.gene056506 | MS.gene84705 | 0.813354 | 2.67E-51 | -1.69E-46 |
| MS.gene056595 | MS.gene84705 | 0.8049 | 1.73E-49 | -1.69E-46 |
| MS.gene056643 | MS.gene84705 | 0.80892 | 2.44E-50 | -1.69E-46 |
| MS.gene057026 | MS.gene84705 | 0.841756 | 3.92E-58 | -1.69E-46 |
| MS.gene057060 | MS.gene84705 | 0.828032 | 1.13E-54 | -1.69E-46 |
| MS.gene057414 | MS.gene84705 | 0.837212 | 5.94E-57 | -1.69E-46 |
| MS.gene057444 | MS.gene84705 | 0.824549 | 7.60E-54 | -1.69E-46 |
| MS.gene057693 | MS.gene84705 | 0.800529 | 1.38E-48 | -1.69E-46 |
| MS.gene058625 | MS.gene84705 | 0.844986 | 5.38E-59 | -1.69E-46 |
| MS.gene058636 | MS.gene84705 | 0.822474 | 2.32E-53 | -1.69E-46 |
| MS.gene058829 | MS.gene84705 | 0.828854 | 7.13E-55 | -1.69E-46 |
| MS.gene058979 | MS.gene84705 | 0.816328 | 5.85E-52 | -1.69E-46 |
| MS.gene05897 | MS.gene84705 | 0.801861 | 7.37E-49 | -1.69E-46 |
| MS.gene059015 | MS.gene84705 | 0.810223 | 1.28E-50 | -1.69E-46 |
| MS.gene059084 | MS.gene84705 | 0.801163 | 1.03E-48 | -1.69E-46 |
| MS.gene059272 | MS.gene84705 | 0.82469 | 7.04E-54 | -1.69E-46 |
| MS.gene05954 | MS.gene84705 | 0.808929 | 2.43E-50 | -1.69E-46 |
| MS.gene059570 | MS.gene84705 | 0.814647 | 1.39E-51 | -1.69E-46 |
| MS.gene059584 | MS.gene84705 | 0.803943 | 2.74E-49 | -1.69E-46 |
| MS.gene059625 | MS.gene84705 | 0.833804 | 4.32E-56 | -1.69E-46 |
| MS.gene059725 | MS.gene84705 | 0.800378 | 1.48E-48 | -1.69E-46 |
| MS.gene059789 | MS.gene84705 | 0.800502 | 1.40E-48 | -1.69E-46 |
| MS.gene060137 | MS.gene84705 | -0.801617 | 8.28E-49 | -1.69E-46 |
| MS.gene060167 | MS.gene84705 | 0.810128 | 1.34E-50 | -1.69E-46 |
| MS.gene060322 | MS.gene84705 | 0.854462 | 1.21E-61 | -1.69E-46 |
| MS.gene060521 | MS.gene84705 | 0.810121 | 1.35E-50 | -1.69E-46 |
| MS.gene06052 | MS.gene84705 | 0.839897 | 1.20E-57 | -1.69E-46 |
| MS.gene060572 | MS.gene84705 | 0.820349 | 7.19E-53 | -1.69E-46 |
| MS.gene060587 | MS.gene84705 | 0.828234 | 1.01E-54 | -1.69E-46 |
| MS.gene060690 | MS.gene84705 | 0.806412 | 8.33E-50 | -1.69E-46 |
| MS.gene060781 | MS.gene84705 | 0.805417 | 1.35E-49 | -1.69E-46 |
| MS.gene061040 | MS.gene84705 | -0.805882 | 1.08E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84705.t1 | MTR_3g086790 | 98.344 | 302 | 4 | 1 | 1 | 301 | 1 | 302 | 0.0 | 608 |
| MS.gene84705.t1 | MTR_8g089895 | 59.021 | 327 | 92 | 11 | 1 | 301 | 1 | 311 | 7.91e-117 | 339 |
| MS.gene84705.t1 | MTR_3g080100 | 41.638 | 293 | 132 | 7 | 1 | 292 | 1 | 255 | 5.49e-50 | 166 |
| MS.gene84705.t1 | MTR_3g080100 | 43.478 | 253 | 106 | 5 | 40 | 292 | 1 | 216 | 1.79e-47 | 158 |
| MS.gene84705.t1 | MTR_5g038280 | 57.258 | 124 | 49 | 1 | 45 | 164 | 69 | 192 | 2.85e-39 | 140 |
| MS.gene84705.t1 | MTR_8g469430 | 57.377 | 122 | 48 | 1 | 47 | 168 | 81 | 198 | 3.84e-39 | 139 |
| MS.gene84705.t1 | MTR_8g468210 | 51.656 | 151 | 60 | 4 | 25 | 165 | 33 | 180 | 8.31e-39 | 138 |
| MS.gene84705.t1 | MTR_5g039000 | 57.500 | 120 | 48 | 1 | 46 | 165 | 64 | 180 | 3.37e-37 | 134 |
| MS.gene84705.t1 | MTR_4g107650 | 59.459 | 111 | 45 | 0 | 50 | 160 | 86 | 196 | 6.91e-37 | 134 |
| MS.gene84705.t1 | MTR_6g007647 | 62.264 | 106 | 40 | 0 | 58 | 163 | 32 | 137 | 8.01e-37 | 132 |
| MS.gene84705.t1 | MTR_6g007647 | 62.264 | 106 | 40 | 0 | 58 | 163 | 66 | 171 | 1.81e-36 | 132 |
| MS.gene84705.t1 | MTR_6g011610 | 49.635 | 137 | 61 | 2 | 26 | 154 | 36 | 172 | 1.19e-35 | 129 |
| MS.gene84705.t1 | MTR_6g011610 | 61.856 | 97 | 37 | 0 | 58 | 154 | 95 | 191 | 2.49e-35 | 129 |
| MS.gene84705.t1 | MTR_7g010020 | 59.794 | 97 | 39 | 0 | 58 | 154 | 79 | 175 | 3.80e-30 | 115 |
| MS.gene84705.t1 | MTR_7g103340 | 40.571 | 175 | 90 | 4 | 35 | 209 | 41 | 201 | 6.85e-29 | 110 |
| MS.gene84705.t1 | MTR_1g061660 | 38.372 | 172 | 88 | 4 | 58 | 220 | 58 | 220 | 3.33e-26 | 103 |
| MS.gene84705.t1 | MTR_8g026960 | 36.702 | 188 | 106 | 5 | 66 | 241 | 41 | 227 | 7.49e-26 | 103 |
| MS.gene84705.t1 | MTR_3g092150 | 50.549 | 91 | 45 | 0 | 61 | 151 | 40 | 130 | 7.31e-25 | 100 |
| MS.gene84705.t1 | MTR_5g019650 | 48.182 | 110 | 57 | 0 | 51 | 160 | 45 | 154 | 1.03e-22 | 94.0 |
| MS.gene84705.t1 | MTR_5g019680 | 57.317 | 82 | 35 | 0 | 51 | 132 | 45 | 126 | 1.07e-22 | 93.6 |
| MS.gene84705.t1 | MTR_4g100550 | 41.406 | 128 | 67 | 2 | 51 | 178 | 112 | 231 | 1.71e-18 | 84.0 |
| MS.gene84705.t1 | MTR_1g017090 | 42.500 | 120 | 62 | 1 | 59 | 178 | 130 | 242 | 1.65e-17 | 81.3 |
| MS.gene84705.t1 | MTR_2g061030 | 36.879 | 141 | 78 | 3 | 56 | 195 | 197 | 327 | 4.73e-17 | 80.5 |
| MS.gene84705.t1 | MTR_4g097600 | 41.085 | 129 | 65 | 3 | 51 | 178 | 119 | 237 | 1.07e-16 | 78.6 |
| MS.gene84705.t1 | MTR_5g013010 | 40.625 | 128 | 68 | 2 | 51 | 178 | 128 | 247 | 2.16e-16 | 78.2 |
| MS.gene84705.t1 | MTR_1g054285 | 37.063 | 143 | 81 | 2 | 42 | 184 | 137 | 270 | 3.16e-16 | 77.8 |
| MS.gene84705.t1 | MTR_5g014890 | 42.718 | 103 | 52 | 1 | 51 | 153 | 115 | 210 | 7.93e-16 | 76.3 |
| MS.gene84705.t1 | MTR_8g006705 | 41.322 | 121 | 61 | 3 | 59 | 178 | 146 | 257 | 1.76e-15 | 75.9 |
| MS.gene84705.t1 | MTR_4g084750 | 41.346 | 104 | 53 | 2 | 54 | 156 | 60 | 156 | 2.52e-15 | 73.6 |
| MS.gene84705.t1 | MTR_7g093430 | 36.478 | 159 | 80 | 4 | 32 | 178 | 121 | 270 | 9.54e-15 | 73.6 |
| MS.gene84705.t1 | MTR_4g126900 | 45.055 | 91 | 43 | 1 | 62 | 152 | 91 | 174 | 1.06e-14 | 72.0 |
| MS.gene84705.t1 | MTR_3g103590 | 50.000 | 72 | 36 | 0 | 59 | 130 | 145 | 216 | 1.34e-12 | 67.4 |
| MS.gene84705.t1 | MTR_2g038625 | 37.288 | 118 | 64 | 3 | 42 | 156 | 63 | 173 | 1.91e-11 | 62.8 |
| MS.gene84705.t1 | MTR_2g038580 | 37.288 | 118 | 64 | 3 | 42 | 156 | 63 | 173 | 1.91e-11 | 62.8 |
| MS.gene84705.t1 | MTR_5g013010 | 55.000 | 60 | 27 | 0 | 51 | 110 | 128 | 187 | 4.00e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84705.t1 | AT4G40060 | 47.284 | 313 | 134 | 15 | 1 | 301 | 1 | 294 | 1.39e-70 | 220 |
| MS.gene84705.t1 | AT2G22430 | 45.181 | 332 | 129 | 14 | 1 | 301 | 2 | 311 | 5.63e-63 | 201 |
| MS.gene84705.t1 | AT5G65310 | 42.296 | 331 | 141 | 12 | 1 | 301 | 1 | 311 | 5.45e-62 | 199 |
| MS.gene84705.t1 | AT5G65310 | 44.097 | 288 | 117 | 9 | 38 | 301 | 26 | 293 | 1.59e-60 | 194 |
| MS.gene84705.t1 | AT3G01470 | 63.810 | 105 | 37 | 1 | 58 | 161 | 67 | 171 | 4.35e-38 | 136 |
| MS.gene84705.t1 | AT1G69780 | 55.000 | 120 | 51 | 1 | 46 | 165 | 72 | 188 | 1.78e-36 | 132 |
| MS.gene84705.t1 | AT5G15150 | 48.428 | 159 | 78 | 2 | 42 | 197 | 95 | 252 | 6.05e-36 | 131 |
| MS.gene84705.t1 | AT3G01220 | 53.982 | 113 | 50 | 1 | 44 | 154 | 70 | 182 | 1.46e-32 | 122 |
| MS.gene84705.t1 | AT2G46680 | 40.123 | 162 | 91 | 2 | 50 | 205 | 23 | 184 | 3.53e-30 | 115 |
| MS.gene84705.t1 | AT1G26960 | 44.138 | 145 | 74 | 2 | 57 | 201 | 69 | 206 | 2.53e-29 | 112 |
| MS.gene84705.t1 | AT2G46680 | 40.000 | 160 | 92 | 2 | 50 | 205 | 23 | 182 | 3.54e-29 | 112 |
| MS.gene84705.t1 | AT3G61890 | 48.936 | 94 | 48 | 0 | 62 | 155 | 33 | 126 | 4.83e-26 | 103 |
| MS.gene84705.t1 | AT1G27045 | 49.565 | 115 | 58 | 0 | 45 | 159 | 54 | 168 | 9.48e-26 | 102 |
| MS.gene84705.t1 | AT1G27045 | 49.565 | 115 | 58 | 0 | 45 | 159 | 11 | 125 | 1.66e-25 | 100 |
| MS.gene84705.t1 | AT1G27045 | 49.565 | 115 | 58 | 0 | 45 | 159 | 11 | 125 | 1.66e-25 | 100 |
| MS.gene84705.t1 | AT1G27045 | 49.565 | 115 | 58 | 0 | 45 | 159 | 3 | 117 | 1.96e-25 | 100 |
| MS.gene84705.t1 | AT5G03790 | 43.200 | 125 | 55 | 3 | 59 | 180 | 77 | 188 | 5.76e-25 | 100 |
| MS.gene84705.t1 | AT1G27045 | 49.533 | 107 | 54 | 0 | 45 | 151 | 54 | 160 | 7.30e-24 | 98.2 |
| MS.gene84705.t1 | AT5G03790 | 50.000 | 90 | 38 | 1 | 59 | 148 | 77 | 159 | 1.03e-22 | 93.6 |
| MS.gene84705.t1 | AT4G36740 | 46.789 | 109 | 51 | 1 | 52 | 160 | 49 | 150 | 2.02e-21 | 90.5 |
| MS.gene84705.t1 | AT4G36740 | 46.789 | 109 | 51 | 1 | 52 | 160 | 48 | 149 | 2.17e-21 | 90.5 |
| MS.gene84705.t1 | AT2G18550 | 44.275 | 131 | 58 | 3 | 46 | 173 | 50 | 168 | 2.64e-21 | 90.5 |
| MS.gene84705.t1 | AT5G66700 | 60.811 | 74 | 29 | 0 | 59 | 132 | 71 | 144 | 3.37e-21 | 90.1 |
| MS.gene84705.t1 | AT2G36610 | 39.535 | 129 | 61 | 3 | 38 | 158 | 52 | 171 | 1.04e-20 | 87.8 |
| MS.gene84705.t1 | AT5G53980 | 53.521 | 71 | 33 | 0 | 59 | 129 | 11 | 81 | 4.59e-17 | 77.4 |
| MS.gene84705.t1 | AT2G01430 | 38.129 | 139 | 73 | 5 | 42 | 179 | 122 | 248 | 2.11e-16 | 78.2 |
| MS.gene84705.t1 | AT4G16780 | 39.062 | 128 | 70 | 2 | 51 | 178 | 121 | 240 | 2.88e-16 | 77.8 |
| MS.gene84705.t1 | AT4G37790 | 42.718 | 103 | 52 | 1 | 51 | 153 | 118 | 213 | 6.03e-16 | 76.6 |
| MS.gene84705.t1 | AT2G22800 | 44.660 | 103 | 50 | 1 | 51 | 153 | 105 | 200 | 1.32e-15 | 75.9 |
| MS.gene84705.t1 | AT5G06710 | 35.758 | 165 | 81 | 5 | 57 | 221 | 188 | 327 | 3.75e-15 | 75.1 |
| MS.gene84705.t1 | AT4G17460 | 43.000 | 100 | 50 | 1 | 54 | 153 | 130 | 222 | 1.78e-14 | 72.8 |
| MS.gene84705.t1 | AT5G47370 | 42.718 | 103 | 52 | 1 | 51 | 153 | 122 | 217 | 2.25e-14 | 72.4 |
| MS.gene84705.t1 | AT2G44910 | 39.167 | 120 | 65 | 2 | 59 | 178 | 163 | 274 | 9.14e-14 | 70.9 |
| MS.gene84705.t1 | AT3G60390 | 38.525 | 122 | 67 | 2 | 57 | 178 | 160 | 273 | 5.59e-13 | 68.6 |
| MS.gene84705.t1 | AT2G01430 | 45.714 | 70 | 38 | 0 | 42 | 111 | 122 | 191 | 8.70e-11 | 60.8 |
Find 59 sgRNAs with CRISPR-Local
Find 81 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAGCTTCTCTTTCCTTTC+AGG | 0.097054 | 3.4:-80818888 | None:intergenic |
| TCCATCTTGCTCTCCTGTTT+TGG | 0.182991 | 3.4:-80818953 | None:intergenic |
| TCTTCACATGATAAGATTTC+TGG | 0.185572 | 3.4:-80819962 | None:intergenic |
| GTCATAATCCAATTGATCTT+TGG | 0.265734 | 3.4:-80819763 | None:intergenic |
| CCATACACATGTTTGTTCCT+TGG | 0.325978 | 3.4:-80818717 | None:intergenic |
| CAATTCATGGAGGAAGATTC+AGG | 0.342389 | 3.4:-80819930 | None:intergenic |
| GGAATTGATGTTTCTGAAGA+TGG | 0.346885 | 3.4:-80819729 | None:intergenic |
| AAGCAGTTGGAAAGAGATTA+TGG | 0.350992 | 3.4:+80818981 | MS.gene84705:CDS |
| TTCAGAATCCAAAGATCAAT+TGG | 0.360161 | 3.4:+80819755 | MS.gene84705:CDS |
| TAGCTGTTTGGTTCCAAAAC+AGG | 0.367018 | 3.4:+80818940 | MS.gene84705:CDS |
| ATTAATGATTAACCTGTTGA+TGG | 0.378350 | 3.4:-80818539 | None:intergenic |
| GAAGGATGTGTTGAAGAAAC+TGG | 0.381674 | 3.4:+80818780 | MS.gene84705:CDS |
| TCCAGCGCAATTTCTTCATC+CGG | 0.382294 | 3.4:+80819873 | MS.gene84705:CDS |
| TGATCTTTGGATTCTGAACT+AGG | 0.386464 | 3.4:-80819750 | None:intergenic |
| GAGAAGCTTGCCATTGAACT+TGG | 0.393138 | 3.4:+80818900 | MS.gene84705:CDS |
| AGTGGATCAAGTTAAGGCTT+TGG | 0.405768 | 3.4:+80818833 | MS.gene84705:CDS |
| AGCCTAGACAAGTAGCTGTT+TGG | 0.421533 | 3.4:+80818928 | MS.gene84705:CDS |
| CTGGTACTGGAAACAATTCA+TGG | 0.434538 | 3.4:-80819943 | None:intergenic |
| CCAGCGCAATTTCTTCATCC+GGG | 0.438421 | 3.4:+80819874 | MS.gene84705:CDS |
| ATCACAATCTCTCCATCAAC+AGG | 0.446409 | 3.4:+80818527 | MS.gene84705:CDS |
| CATGATAAGATTTCTGGTAC+TGG | 0.447688 | 3.4:-80819956 | None:intergenic |
| AGACTTGAAAGACGGTTCTT+CGG | 0.453631 | 3.4:+80819842 | MS.gene84705:CDS |
| GAACCGTCTTTCAAGTCTAC+TGG | 0.456218 | 3.4:-80819837 | None:intergenic |
| ACTAAGAGTGGATCAAGTTA+AGG | 0.482047 | 3.4:+80818827 | MS.gene84705:CDS |
| TTTCAATCAATGATGTTGGA+TGG | 0.484310 | 3.4:+80818747 | MS.gene84705:CDS |
| TGAAGAAGAATCTGAGGTGT+TGG | 0.489416 | 3.4:-80818495 | None:intergenic |
| TTGGATGGATTTGAAGAAGA+AGG | 0.493565 | 3.4:+80818762 | MS.gene84705:CDS |
| CCAAGGAACAAACATGTGTA+TGG | 0.493903 | 3.4:+80818717 | MS.gene84705:CDS |
| GGTCAGGACAGTACCATTGT+AGG | 0.494776 | 3.4:-80820052 | None:intergenic |
| AACAACAATGATGTTGGTAT+TGG | 0.500792 | 3.4:+80819795 | MS.gene84705:CDS |
| GAACAAACATGTGTATGGTA+TGG | 0.501372 | 3.4:+80818722 | MS.gene84705:CDS |
| AGGAGTTGAAGAAGAATCTG+AGG | 0.515030 | 3.4:-80818501 | None:intergenic |
| GGAGTTTCAATCAATGATGT+TGG | 0.518927 | 3.4:+80818743 | MS.gene84705:CDS |
| GAAGAAGAATCTGAGGTGTT+GGG | 0.524763 | 3.4:-80818494 | None:intergenic |
| GAATTGATGTTTCTGAAGAT+GGG | 0.525493 | 3.4:-80819728 | None:intergenic |
| GAAATCTTATCATGTGAAGA+TGG | 0.526190 | 3.4:+80819965 | MS.gene84705:CDS |
| CCCGGATGAAGAAATTGCGC+TGG | 0.538230 | 3.4:-80819874 | None:intergenic |
| AAGGAATTGAAATCAAAGCT+TGG | 0.543819 | 3.4:+80819624 | MS.gene84705:CDS |
| AGGCTGCAATCCAAGTTCAA+TGG | 0.549394 | 3.4:-80818910 | None:intergenic |
| AAGATTCAGGAGACAACAAA+AGG | 0.555354 | 3.4:-80819917 | None:intergenic |
| ATAATCAACAACAATGATGT+TGG | 0.562748 | 3.4:+80819789 | MS.gene84705:CDS |
| AAAACAAGCTTGAACCTGAA+AGG | 0.570660 | 3.4:+80818874 | MS.gene84705:CDS |
| CAGCGCAATTTCTTCATCCG+GGG | 0.572338 | 3.4:+80819875 | MS.gene84705:CDS |
| GGACAGTACCATTGTAGGGT+TGG | 0.574109 | 3.4:-80820047 | None:intergenic |
| TCCAAAACAGGAGAGCAAGA+TGG | 0.577020 | 3.4:+80818952 | MS.gene84705:CDS |
| GAAGAAACGTAGACTAAGAG+TGG | 0.584527 | 3.4:+80818815 | MS.gene84705:CDS |
| GTCAGGACAGTACCATTGTA+GGG | 0.584883 | 3.4:-80820051 | None:intergenic |
| AACCAAACAGCTACTTGTCT+AGG | 0.590010 | 3.4:-80818930 | None:intergenic |
| CAATTTCTTAAGTGCCGATG+AGG | 0.590118 | 3.4:+80819995 | MS.gene84705:CDS |
| TTTCCAGTAGACTTGAAAGA+CGG | 0.606889 | 3.4:+80819834 | MS.gene84705:CDS |
| AAGATGGAAGACTAAGCAGT+TGG | 0.608505 | 3.4:+80818968 | MS.gene84705:CDS |
| ATTTAGAGGAACATAGTCCA+AGG | 0.623460 | 3.4:+80818700 | MS.gene84705:intron |
| AATGGTACTGTCCTGACCAG+TGG | 0.629087 | 3.4:+80820057 | MS.gene84705:CDS |
| CTGCTGACTCTGAAGAACCC+CGG | 0.637223 | 3.4:-80819892 | None:intergenic |
| TTCATCGCAAGATTCAAGCA+TGG | 0.648881 | 3.4:-80819694 | None:intergenic |
| AGCAAGCACCAACCCTACAA+TGG | 0.659727 | 3.4:+80820039 | MS.gene84705:CDS |
| ATCTTATCATGTGAAGATGG+AGG | 0.661383 | 3.4:+80819968 | MS.gene84705:CDS |
| GATGGAGAGATTGTGATGAG+AGG | 0.700166 | 3.4:-80818521 | None:intergenic |
| GTACTGGAAACAATTCATGG+AGG | 0.765506 | 3.4:-80819940 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCTTTTTTCTTTCTATTTT+TGG | + | chr3.4:80818592-80818611 | MS.gene84705:intron | 15.0% |
| !! | AACGTAAAAGTTAAAAAACA+TGG | - | chr3.4:80818624-80818643 | None:intergenic | 20.0% |
| !!! | ATGTTTTTTAACTTTTACGT+TGG | + | chr3.4:80818623-80818642 | MS.gene84705:intron | 20.0% |
| !!! | TTTGTTGTATTTACAGATTA+AGG | + | chr3.4:80819605-80819624 | MS.gene84705:intron | 20.0% |
| !!! | TTTTTCTTTCTATTTTTGGA+GGG | + | chr3.4:80818596-80818615 | MS.gene84705:intron | 20.0% |
| !!! | TTTTTTCTTTCTATTTTTGG+AGG | + | chr3.4:80818595-80818614 | MS.gene84705:intron | 20.0% |
| !!! | TTTTTTTTGCATTGATTTAG+AGG | + | chr3.4:80818686-80818705 | MS.gene84705:intron | 20.0% |
| ! | ATAATCAACAACAATGATGT+TGG | + | chr3.4:80819789-80819808 | MS.gene84705:CDS | 25.0% |
| ! | ATTAATGATTAACCTGTTGA+TGG | - | chr3.4:80818542-80818561 | None:intergenic | 25.0% |
| ! | GATCTTAGTTATGAAATTGT+AGG | + | chr3.4:80819484-80819503 | MS.gene84705:intron | 25.0% |
| ! | TATTTAGTGTATGTTTGGAT+TGG | + | chr3.4:80819394-80819413 | MS.gene84705:intron | 25.0% |
| ! | TGAATTTAGCAAAATCACTT+TGG | + | chr3.4:80819420-80819439 | MS.gene84705:intron | 25.0% |
| ! | TTATAGTTAAGTTACTACTG+TGG | - | chr3.4:80819103-80819122 | None:intergenic | 25.0% |
| !!! | AAAAAGCACAATCAATGTTT+TGG | + | chr3.4:80819656-80819675 | MS.gene84705:CDS | 25.0% |
| !!! | TGTGTTATTTAGTGTATGTT+TGG | + | chr3.4:80819389-80819408 | MS.gene84705:intron | 25.0% |
| AACAACAATGATGTTGGTAT+TGG | + | chr3.4:80819795-80819814 | MS.gene84705:CDS | 30.0% | |
| AAGGAATTGAAATCAAAGCT+TGG | + | chr3.4:80819624-80819643 | MS.gene84705:CDS | 30.0% | |
| GAAATCTTATCATGTGAAGA+TGG | + | chr3.4:80819965-80819984 | MS.gene84705:CDS | 30.0% | |
| GTCATAATCCAATTGATCTT+TGG | - | chr3.4:80819766-80819785 | None:intergenic | 30.0% | |
| TCTTCACATGATAAGATTTC+TGG | - | chr3.4:80819965-80819984 | None:intergenic | 30.0% | |
| TTCAGAATCCAAAGATCAAT+TGG | + | chr3.4:80819755-80819774 | MS.gene84705:CDS | 30.0% | |
| TTTCAATCAATGATGTTGGA+TGG | + | chr3.4:80818747-80818766 | MS.gene84705:CDS | 30.0% | |
| ! | GAATTGATGTTTCTGAAGAT+GGG | - | chr3.4:80819731-80819750 | None:intergenic | 30.0% |
| !! | GGCAAGTATTTAACTTTTCT+AGG | + | chr3.4:80819505-80819524 | MS.gene84705:intron | 30.0% |
| AAAACAAGCTTGAACCTGAA+AGG | + | chr3.4:80818874-80818893 | MS.gene84705:CDS | 35.0% | |
| AAGATTCAGGAGACAACAAA+AGG | - | chr3.4:80819920-80819939 | None:intergenic | 35.0% | |
| AAGCAGTTGGAAAGAGATTA+TGG | + | chr3.4:80818981-80819000 | MS.gene84705:CDS | 35.0% | |
| ACTAAGAGTGGATCAAGTTA+AGG | + | chr3.4:80818827-80818846 | MS.gene84705:CDS | 35.0% | |
| AGATCAAGTACTTTCACAAG+AGG | - | chr3.4:80819469-80819488 | None:intergenic | 35.0% | |
| ATCTTATCATGTGAAGATGG+AGG | + | chr3.4:80819968-80819987 | MS.gene84705:CDS | 35.0% | |
| ATTTAGAGGAACATAGTCCA+AGG | + | chr3.4:80818700-80818719 | MS.gene84705:intron | 35.0% | |
| GAACAAACATGTGTATGGTA+TGG | + | chr3.4:80818722-80818741 | MS.gene84705:CDS | 35.0% | |
| GGAGTTTCAATCAATGATGT+TGG | + | chr3.4:80818743-80818762 | MS.gene84705:CDS | 35.0% | |
| TGATCTTTGGATTCTGAACT+AGG | - | chr3.4:80819753-80819772 | None:intergenic | 35.0% | |
| TTTCCAGTAGACTTGAAAGA+CGG | + | chr3.4:80819834-80819853 | MS.gene84705:CDS | 35.0% | |
| ! | AGACAACAAAGCTTTTCACA+AGG | + | chr3.4:80819058-80819077 | MS.gene84705:CDS | 35.0% |
| ! | GGAATTGATGTTTCTGAAGA+TGG | - | chr3.4:80819732-80819751 | None:intergenic | 35.0% |
| ! | TTGGATGGATTTGAAGAAGA+AGG | + | chr3.4:80818762-80818781 | MS.gene84705:CDS | 35.0% |
| !! | CATGATAAGATTTCTGGTAC+TGG | - | chr3.4:80819959-80819978 | None:intergenic | 35.0% |
| !!! | AATCAATGTTTTGGTGAAGG+AGG | + | chr3.4:80819665-80819684 | MS.gene84705:CDS | 35.0% |
| !!! | CACAATCAATGTTTTGGTGA+AGG | + | chr3.4:80819662-80819681 | MS.gene84705:CDS | 35.0% |
| AACCAAACAGCTACTTGTCT+AGG | - | chr3.4:80818933-80818952 | None:intergenic | 40.0% | |
| AAGATGGAAGACTAAGCAGT+TGG | + | chr3.4:80818968-80818987 | MS.gene84705:CDS | 40.0% | |
| AGACTTGAAAGACGGTTCTT+CGG | + | chr3.4:80819842-80819861 | MS.gene84705:CDS | 40.0% | |
| AGGAGTTGAAGAAGAATCTG+AGG | - | chr3.4:80818504-80818523 | None:intergenic | 40.0% | |
| AGTGGATCAAGTTAAGGCTT+TGG | + | chr3.4:80818833-80818852 | MS.gene84705:CDS | 40.0% | |
| ATCACAATCTCTCCATCAAC+AGG | + | chr3.4:80818527-80818546 | MS.gene84705:CDS | 40.0% | |
| CAATTCATGGAGGAAGATTC+AGG | - | chr3.4:80819933-80819952 | None:intergenic | 40.0% | |
| CCAAGGAACAAACATGTGTA+TGG | + | chr3.4:80818717-80818736 | MS.gene84705:CDS | 40.0% | |
| CCATACACATGTTTGTTCCT+TGG | - | chr3.4:80818720-80818739 | None:intergenic | 40.0% | |
| GAAGAAACGTAGACTAAGAG+TGG | + | chr3.4:80818815-80818834 | MS.gene84705:CDS | 40.0% | |
| GAAGGATGTGTTGAAGAAAC+TGG | + | chr3.4:80818780-80818799 | MS.gene84705:CDS | 40.0% | |
| GTACTGGAAACAATTCATGG+AGG | - | chr3.4:80819943-80819962 | None:intergenic | 40.0% | |
| TTCATCGCAAGATTCAAGCA+TGG | - | chr3.4:80819697-80819716 | None:intergenic | 40.0% | |
| ! | CAACAAAGCTTTTCACAAGG+AGG | + | chr3.4:80819061-80819080 | MS.gene84705:CDS | 40.0% |
| ! | CTGGTACTGGAAACAATTCA+TGG | - | chr3.4:80819946-80819965 | None:intergenic | 40.0% |
| ! | GAAGAAGAATCTGAGGTGTT+GGG | - | chr3.4:80818497-80818516 | None:intergenic | 40.0% |
| ! | TAGCTGTTTGGTTCCAAAAC+AGG | + | chr3.4:80818940-80818959 | MS.gene84705:CDS | 40.0% |
| ! | TGAAGAAGAATCTGAGGTGT+TGG | - | chr3.4:80818498-80818517 | None:intergenic | 40.0% |
| !! | CAATTTCTTAAGTGCCGATG+AGG | + | chr3.4:80819995-80820014 | MS.gene84705:CDS | 40.0% |
| !! | GGCTTTGGAGAAAAACTTTG+AGG | + | chr3.4:80818848-80818867 | MS.gene84705:CDS | 40.0% |
| AGCCTAGACAAGTAGCTGTT+TGG | + | chr3.4:80818928-80818947 | MS.gene84705:CDS | 45.0% | |
| AGGCTGCAATCCAAGTTCAA+TGG | - | chr3.4:80818913-80818932 | None:intergenic | 45.0% | |
| GAAAAAGTTGCACGCCTCAT+CGG | - | chr3.4:80820012-80820031 | None:intergenic | 45.0% | |
| GAGAAGCTTGCCATTGAACT+TGG | + | chr3.4:80818900-80818919 | MS.gene84705:CDS | 45.0% | |
| GATGGAGAGATTGTGATGAG+AGG | - | chr3.4:80818524-80818543 | None:intergenic | 45.0% | |
| GCAAGCTTCTCTTTCCTTTC+AGG | - | chr3.4:80818891-80818910 | None:intergenic | 45.0% | |
| GTCAGGACAGTACCATTGTA+GGG | - | chr3.4:80820054-80820073 | None:intergenic | 45.0% | |
| TCCAAAACAGGAGAGCAAGA+TGG | + | chr3.4:80818952-80818971 | MS.gene84705:CDS | 45.0% | |
| TCCAGCGCAATTTCTTCATC+CGG | + | chr3.4:80819873-80819892 | MS.gene84705:CDS | 45.0% | |
| ! | GAACCGTCTTTCAAGTCTAC+TGG | - | chr3.4:80819840-80819859 | None:intergenic | 45.0% |
| ! | TCCATCTTGCTCTCCTGTTT+TGG | - | chr3.4:80818956-80818975 | None:intergenic | 45.0% |
| !! | TGAGGCGTGCAACTTTTTCT+CGG | + | chr3.4:80820013-80820032 | MS.gene84705:CDS | 45.0% |
| AATGGTACTGTCCTGACCAG+TGG | + | chr3.4:80820057-80820076 | MS.gene84705:CDS | 50.0% | |
| AGCAAGCACCAACCCTACAA+TGG | + | chr3.4:80820039-80820058 | MS.gene84705:CDS | 50.0% | |
| CAGCGCAATTTCTTCATCCG+GGG | + | chr3.4:80819875-80819894 | MS.gene84705:CDS | 50.0% | |
| CCAGCGCAATTTCTTCATCC+GGG | + | chr3.4:80819874-80819893 | MS.gene84705:CDS | 50.0% | |
| GGACAGTACCATTGTAGGGT+TGG | - | chr3.4:80820050-80820069 | None:intergenic | 50.0% | |
| GGTCAGGACAGTACCATTGT+AGG | - | chr3.4:80820055-80820074 | None:intergenic | 50.0% | |
| CCCGGATGAAGAAATTGCGC+TGG | - | chr3.4:80819877-80819896 | None:intergenic | 55.0% | |
| !! | CTGCTGACTCTGAAGAACCC+CGG | - | chr3.4:80819895-80819914 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 80818485 | 80820085 | 80818485 | ID=MS.gene84705 |
| chr3.4 | mRNA | 80818485 | 80820085 | 80818485 | ID=MS.gene84705.t1;Parent=MS.gene84705 |
| chr3.4 | exon | 80818485 | 80818548 | 80818485 | ID=MS.gene84705.t1.exon1;Parent=MS.gene84705.t1 |
| chr3.4 | CDS | 80818485 | 80818548 | 80818485 | ID=cds.MS.gene84705.t1;Parent=MS.gene84705.t1 |
| chr3.4 | exon | 80818706 | 80819082 | 80818706 | ID=MS.gene84705.t1.exon2;Parent=MS.gene84705.t1 |
| chr3.4 | CDS | 80818706 | 80819082 | 80818706 | ID=cds.MS.gene84705.t1;Parent=MS.gene84705.t1 |
| chr3.4 | exon | 80819621 | 80820085 | 80819621 | ID=MS.gene84705.t1.exon3;Parent=MS.gene84705.t1 |
| chr3.4 | CDS | 80819621 | 80820085 | 80819621 | ID=cds.MS.gene84705.t1;Parent=MS.gene84705.t1 |
| Gene Sequence |
| Protein sequence |
