AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene90576


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene90576.t1 MTR_2g450530 95.402 348 10 3 1 348 1 342 0.0 678
MS.gene90576.t1 MTR_2g450530 99.206 252 2 0 97 348 26 277 0.0 516
MS.gene90576.t1 MTR_3g074250 49.062 320 145 5 38 348 31 341 1.06e-100 301
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene90576.t1 AT2G41040 70.033 307 86 3 46 348 48 352 5.51e-158 447
MS.gene90576.t1 AT1G78140 52.921 291 128 5 66 348 65 354 1.48e-100 301

Find 85 sgRNAs with CRISPR-Local

Find 383 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGGTGCTGCTTTGCATTGC+TGG 0.079979 2.1:+41829794 MS.gene90576:CDS
CTGGATCTGACAGTGACTTC+TGG 0.199104 2.1:+41828496 MS.gene90576:CDS
TCCCGAAAATTTGCCAAATC+TGG 0.210877 2.1:+41829483 MS.gene90576:CDS
TTGTAAGAGCAGATGTTTCT+AGG 0.235494 2.1:+41829734 MS.gene90576:CDS
GAGGTTGGCGTCAAAATTTC+AGG 0.262886 2.1:+41828894 MS.gene90576:CDS
TTCAGGCAAAGTGGCTTTCC+TGG 0.278494 2.1:+41828911 MS.gene90576:CDS
TCTTAGTACACGGGTGATTT+CGG 0.316192 2.1:-41831206 None:intergenic
GTTACACTTCATCAACTTCC+TGG 0.317997 2.1:+41831263 MS.gene90576:CDS
TCCAGAGTAGGTTCCAGATT+TGG 0.320022 2.1:-41829496 None:intergenic
TCAATGGTTCATAACATATA+GGG 0.366384 2.1:-41828142 None:intergenic
CACTAGCAAAGACGGGTATC+TGG 0.366593 2.1:+41828477 MS.gene90576:CDS
AGGCACGAATATTGAACCTT+TGG 0.368132 2.1:-41826713 None:intergenic
ATCAATGGTTCATAACATAT+AGG 0.384751 2.1:-41828143 None:intergenic
TGGATCTGACAGTGACTTCT+GGG 0.394949 2.1:+41828497 MS.gene90576:CDS
GGCACGAATATTGAACCTTT+GGG 0.413534 2.1:-41826712 None:intergenic
GACGCCAACCTCTTTCATAT+AGG 0.414654 2.1:-41828883 None:intergenic
GAAAGTGGGATTTAGTAAAA+AGG 0.418898 2.1:-41826665 None:intergenic
TTAAGTACGAAGCAGGATAA+AGG 0.419613 2.1:+41828095 MS.gene90576:CDS
AATTGTATTTGATTATTAAG+AGG 0.422776 2.1:-41826627 None:intergenic
AGAAGTGGTGGAGTATTTGT+TGG 0.446578 2.1:+41831226 MS.gene90576:CDS
AAGAGTTTACCTCTCTGAAC+AGG 0.467690 2.1:-41831294 None:intergenic
ATTGTATTTGATTATTAAGA+GGG 0.469023 2.1:-41826626 None:intergenic
CAGAGGTCTTCTCTAGGCTA+TGG 0.469989 2.1:+41831676 MS.gene90576:intron
TAGAAACATCTGCTCTTACA+AGG 0.471408 2.1:-41829732 None:intergenic
TTACACTTCATCAACTTCCT+GGG 0.474826 2.1:+41831264 MS.gene90576:CDS
GCCAAATCTGGAACCTACTC+TGG 0.475484 2.1:+41829495 MS.gene90576:CDS
TCTGAACAGGCGTGCAACCC+AGG 0.477280 2.1:-41831281 None:intergenic
ATGTTGAAGTTCAACCAAAT+CGG 0.478110 2.1:+41828530 MS.gene90576:CDS
TGCCTCCTCTGCTGTTGTTG+TGG 0.483280 2.1:+41826731 MS.gene90576:CDS
TATGAACCATTGATAAGAAA+AGG 0.483602 2.1:+41828152 MS.gene90576:CDS
GTTTCATTCCTATATGAAAG+AGG 0.483857 2.1:+41828875 MS.gene90576:CDS
AGGTCAGCAATATACAGGTC+TGG 0.485814 2.1:+41828424 MS.gene90576:intron
ATCAACTGAACTTGATTCAA+AGG 0.486667 2.1:-41829761 None:intergenic
TAATGAAATCGTAGCATTGA+CGG 0.490015 2.1:-41829551 None:intergenic
AGACATATTACTTACAGCAT+TGG 0.490607 2.1:-41829827 None:intergenic
CTTTATAATGCAGTTCAGAA+TGG 0.495463 2.1:+41829392 MS.gene90576:intron
GGAGAAGGCGAGGGCGAAAG+TGG 0.497259 2.1:-41826680 None:intergenic
ACTTCAGGTCAGCAATATAC+AGG 0.502396 2.1:+41828419 MS.gene90576:intron
CATTCCTATATGAAAGAGGT+TGG 0.503405 2.1:+41828879 MS.gene90576:CDS
CATATTACTTACAGCATTGG+AGG 0.505667 2.1:-41829824 None:intergenic
TCAGGATTTAAGTACGAAGC+AGG 0.508485 2.1:+41828088 MS.gene90576:intron
TTTGGGTTTGAGAGCGGAGA+AGG 0.511189 2.1:-41826695 None:intergenic
ACTTACAAGTTAAGACCAAC+GGG 0.516370 2.1:-41828176 None:intergenic
TGTTTGCAGAGGTCTTCTCT+AGG 0.519602 2.1:+41831670 MS.gene90576:intron
AGCAGCGGTAGTAGCAGAAG+CGG 0.524135 2.1:-41826586 None:intergenic
CTCCACCACTTCTTAGTACA+CGG 0.524333 2.1:-41831216 None:intergenic
AAATCGTACACTAGCAAAGA+CGG 0.529071 2.1:+41828469 MS.gene90576:CDS
CTCCACAACAACAGCAGAGG+AGG 0.537134 2.1:-41826733 None:intergenic
GAGTACTTTGAGCCTGCTAA+AGG 0.538931 2.1:+41829420 MS.gene90576:CDS
GTCGATGTTAGCTGTGGAAG+TGG 0.544771 2.1:+41829453 MS.gene90576:CDS
CTTTCCTGGTCCTGATGAAG+AGG 0.548244 2.1:+41828925 MS.gene90576:CDS
TCAACTGAACTTGATTCAAA+GGG 0.548708 2.1:-41829760 None:intergenic
ACAATCAGACCACCTTTAGC+AGG 0.549004 2.1:-41829432 None:intergenic
CGTCAAAATTTCAGGCAAAG+TGG 0.551579 2.1:+41828902 MS.gene90576:CDS
CTTACAGCATTGGAGGGAGA+TGG 0.562732 2.1:-41829817 None:intergenic
GTTTGAGAGCGGAGAAGGCG+AGG 0.563644 2.1:-41826690 None:intergenic
AAAGACCTTTGCACTTCATG+TGG 0.564824 2.1:+41831721 MS.gene90576:CDS
TTTGATTATTAAGAGGGTGA+AGG 0.565563 2.1:-41826620 None:intergenic
TGAAGTGTAACGAAGAAAAG+TGG 0.578444 2.1:-41831251 None:intergenic
AACTTACAAGTTAAGACCAA+CGG 0.579343 2.1:-41828177 None:intergenic
TCAGTTGATGCGGTTCATGC+TGG 0.581885 2.1:+41829775 MS.gene90576:CDS
TTTGAGAGCGGAGAAGGCGA+GGG 0.588926 2.1:-41826689 None:intergenic
TTCATATAGGAATGAAACAA+GGG 0.589684 2.1:-41828870 None:intergenic
TGAATCAAGTTCAGTTGATG+CGG 0.590902 2.1:+41829765 MS.gene90576:CDS
CATACCTCTTCATCAGGACC+AGG 0.591548 2.1:-41828929 None:intergenic
TAAAGCAATTACTCCAGAGT+AGG 0.594128 2.1:-41829508 None:intergenic
TGAACCTTTGGGTTTGAGAG+CGG 0.595270 2.1:-41826701 None:intergenic
TTGATAAGAAAAGGTCCCGT+TGG 0.597047 2.1:+41828161 MS.gene90576:CDS
GAGAAGGCGAGGGCGAAAGT+GGG 0.600598 2.1:-41826679 None:intergenic
AATCGTACACTAGCAAAGAC+GGG 0.601636 2.1:+41828470 MS.gene90576:CDS
TGTTGTTGTGGAGTCTCCGT+CGG 0.604285 2.1:+41826743 MS.gene90576:CDS
TACTTTGAGCCTGCTAAAGG+TGG 0.614743 2.1:+41829423 MS.gene90576:CDS
AGAAACATCTGCTCTTACAA+GGG 0.617587 2.1:-41829731 None:intergenic
TTCTCCGCTCTCAAACCCAA+AGG 0.617708 2.1:+41826697 MS.gene90576:CDS
TTTCATATAGGAATGAAACA+AGG 0.621014 2.1:-41828871 None:intergenic
AAGGAAGAAATGAGAAGCAG+CGG 0.625762 2.1:-41826601 None:intergenic
ATATTACTTACAGCATTGGA+GGG 0.629930 2.1:-41829823 None:intergenic
ATCACCCGTGTACTAAGAAG+TGG 0.637175 2.1:+41831211 MS.gene90576:CDS
TAAGACCACATGAAGTGCAA+AGG 0.637387 2.1:-41831726 None:intergenic
ACCCGTGTACTAAGAAGTGG+TGG 0.640111 2.1:+41831214 MS.gene90576:CDS
TCCACCACTTCTTAGTACAC+GGG 0.645948 2.1:-41831215 None:intergenic
CTGATTGTCGATGTTAGCTG+TGG 0.652004 2.1:+41829447 MS.gene90576:CDS
AGACTCCACAACAACAGCAG+AGG 0.656848 2.1:-41826736 None:intergenic
TCATATAGGAATGAAACAAG+GGG 0.670366 2.1:-41828869 None:intergenic
GGTTGCACGCCTGTTCAGAG+AGG 0.704688 2.1:+41831285 MS.gene90576:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTCAAATCTATATATTA+AGG - chr2.1:41831073-41831092 None:intergenic 10.0%
!! TATTAATATCAATTTGATAA+GGG - chr2.1:41831445-41831464 None:intergenic 10.0%
!!! GTCTAAAATATAATAAAAAA+CGG - chr2.1:41827172-41827191 None:intergenic 10.0%
!!! TCTAAAATATAATAAAAAAC+GGG - chr2.1:41827171-41827190 None:intergenic 10.0%
!!! TTTTTTATTATATTTTAGAC+TGG + chr2.1:41827172-41827191 MS.gene90576:intron 10.0%
!! AAAATTATAATTTATACCGA+CGG - chr2.1:41826762-41826781 None:intergenic 15.0%
!! AAATCTATATATTAAGGAAA+TGG - chr2.1:41831067-41831086 None:intergenic 15.0%
!! AATTGTATTTGATTATTAAG+AGG - chr2.1:41826630-41826649 None:intergenic 15.0%
!! ATAAATTCAAAATCAAGTAA+AGG - chr2.1:41829615-41829634 None:intergenic 15.0%
!! ATTGTATTTGATTATTAAGA+GGG - chr2.1:41826629-41826648 None:intergenic 15.0%
!! CTATTAATATCAATTTGATA+AGG - chr2.1:41831446-41831465 None:intergenic 15.0%
!! TAAATCAACAAATATAATTG+TGG - chr2.1:41830551-41830570 None:intergenic 15.0%
!! TACAAATATTATTCAAGTAT+GGG - chr2.1:41828986-41829005 None:intergenic 15.0%
!! TTGAAAATTCTTTGTATTAA+AGG + chr2.1:41829936-41829955 MS.gene90576:intron 15.0%
!!! ACAAAAAAACTTTTATTGAA+CGG - chr2.1:41829180-41829199 None:intergenic 15.0%
!!! ACGTAATTTTTTTTTAAACT+CGG - chr2.1:41830926-41830945 None:intergenic 15.0%
!!! ATTTGTAGTTATTGTTTTAA+AGG + chr2.1:41828999-41829018 MS.gene90576:intron 15.0%
!! AAAAGTTAGTCAAAGAAAAT+TGG + chr2.1:41827101-41827120 MS.gene90576:intron 20.0%
!! AAACTAAATTTAAACCACTT+GGG - chr2.1:41826951-41826970 None:intergenic 20.0%
!! AAAGGATATTGTACAAATAT+TGG - chr2.1:41828700-41828719 None:intergenic 20.0%
!! AAATAGAAATGTAAATCACA+AGG - chr2.1:41831123-41831142 None:intergenic 20.0%
!! AACTATCATGCTAATTAATT+AGG - chr2.1:41830005-41830024 None:intergenic 20.0%
!! AATTCAAATATCTATAGAAG+TGG - chr2.1:41830241-41830260 None:intergenic 20.0%
!! ACAATTCTCATATGAAAATT+CGG - chr2.1:41831000-41831019 None:intergenic 20.0%
!! ATACAAAATAGATTGTTACA+TGG + chr2.1:41828573-41828592 MS.gene90576:intron 20.0%
!! ATTTGAGAAATCACATATAT+CGG + chr2.1:41828266-41828285 MS.gene90576:intron 20.0%
!! CAACTAAATTTAAACCATTT+AGG - chr2.1:41826975-41826994 None:intergenic 20.0%
!! CACTCTTATAAACTATTATT+TGG - chr2.1:41830443-41830462 None:intergenic 20.0%
!! CTACAAATATTATTCAAGTA+TGG - chr2.1:41828987-41829006 None:intergenic 20.0%
!! GTTAAATAGAGAAAATGAAA+AGG - chr2.1:41826791-41826810 None:intergenic 20.0%
!! TCAACAAATAAATGGAAAAA+TGG - chr2.1:41828730-41828749 None:intergenic 20.0%
!! TGGAAAAATGGATATTTAAA+AGG - chr2.1:41828718-41828737 None:intergenic 20.0%
!! TGTTATTAATTAAGCTCAAA+AGG - chr2.1:41829308-41829327 None:intergenic 20.0%
!! TTAGAAAGAATTCAAGATAT+TGG + chr2.1:41827979-41827998 MS.gene90576:intron 20.0%
!!! AAATTATTTTCATGTCAATG+TGG + chr2.1:41831088-41831107 MS.gene90576:intron 20.0%
!!! ACTACATGTTTTGAAAAATT+AGG - chr2.1:41831035-41831054 None:intergenic 20.0%
!!! ACTTGATTTTGAATTTATTG+CGG + chr2.1:41829617-41829636 MS.gene90576:intron 20.0%
!!! ATTATTTGGTGAATTTTATG+CGG - chr2.1:41830429-41830448 None:intergenic 20.0%
!!! ATTTTTCCATTTATTTGTTG+AGG + chr2.1:41828729-41828748 MS.gene90576:intron 20.0%
!!! CAAAAAAACTTTTATTGAAC+GGG - chr2.1:41829179-41829198 None:intergenic 20.0%
!!! CTACATGTTTTGAAAAATTA+GGG - chr2.1:41831034-41831053 None:intergenic 20.0%
!!! GAAGTCTTTTATTATGTTTA+CGG + chr2.1:41831771-41831790 MS.gene90576:CDS 20.0%
!!! TCAAGTAATATTTTGTATTG+CGG + chr2.1:41830490-41830509 MS.gene90576:intron 20.0%
!!! TTAAATTTAGTTTGCCTAAA+TGG + chr2.1:41826958-41826977 MS.gene90576:intron 20.0%
!!! TTATTGTTTTAAAGGTGTTT+TGG + chr2.1:41829007-41829026 MS.gene90576:intron 20.0%
! AAAAAAATTACGTAACGTGT+AGG + chr2.1:41830933-41830952 MS.gene90576:intron 25.0%
! AAATGATAACTCACAACAAA+AGG - chr2.1:41831403-41831422 None:intergenic 25.0%
! AAATGTAAATCACAAGGATA+AGG - chr2.1:41831117-41831136 None:intergenic 25.0%
! AAGATATTCCCTTTCTATAA+AGG - chr2.1:41829126-41829145 None:intergenic 25.0%
! AATTCAAAATCAAGTAAAGG+AGG - chr2.1:41829612-41829631 None:intergenic 25.0%
! ACATTAAATTCATACTTCGT+TGG - chr2.1:41829643-41829662 None:intergenic 25.0%
! AGAAAAACATGTTATAGAGT+CGG + chr2.1:41827707-41827726 MS.gene90576:intron 25.0%
! AGATCACGTTAAATAAGAAA+TGG + chr2.1:41830383-41830402 MS.gene90576:intron 25.0%
! ATCAACAAATATAATTGTGG+AGG - chr2.1:41830548-41830567 None:intergenic 25.0%
! ATCAATGGTTCATAACATAT+AGG - chr2.1:41828146-41828165 None:intergenic 25.0%
! ATCATCTTGAATTAGATTCA+AGG - chr2.1:41831637-41831656 None:intergenic 25.0%
! ATGACTAATCCTTTATAGAA+AGG + chr2.1:41829114-41829133 MS.gene90576:intron 25.0%
! ATTTCACACTATTTAAACGA+GGG + chr2.1:41831139-41831158 MS.gene90576:intron 25.0%
! CAAACTAAATTTAAACCACT+TGG - chr2.1:41826952-41826971 None:intergenic 25.0%
! CAATTCTCATATGAAAATTC+GGG - chr2.1:41830999-41831018 None:intergenic 25.0%
! CTCTTAAAACTTAAGATCAA+CGG + chr2.1:41827009-41827028 MS.gene90576:intron 25.0%
! GATCACGTTAAATAAGAAAT+GGG + chr2.1:41830384-41830403 MS.gene90576:intron 25.0%
! TAAAAAATTGTATCGAAGGA+GGG - chr2.1:41827451-41827470 None:intergenic 25.0%
! TAGAGAAAATGAAAAGGAAA+AGG - chr2.1:41826785-41826804 None:intergenic 25.0%
! TATGAACCATTGATAAGAAA+AGG + chr2.1:41828152-41828171 MS.gene90576:CDS 25.0%
! TATTTCACACTATTTAAACG+AGG + chr2.1:41831138-41831157 MS.gene90576:intron 25.0%
! TCAACAAATATAATTGTGGA+GGG - chr2.1:41830547-41830566 None:intergenic 25.0%
! TCAATGGTTCATAACATATA+GGG - chr2.1:41828145-41828164 None:intergenic 25.0%
! TCATCTTGAATTAGATTCAA+GGG - chr2.1:41831636-41831655 None:intergenic 25.0%
! TGACTAATCCTTTATAGAAA+GGG + chr2.1:41829115-41829134 MS.gene90576:intron 25.0%
! TTCATATAGGAATGAAACAA+GGG - chr2.1:41828873-41828892 None:intergenic 25.0%
! TTGTGTATCAGTTAACAAAA+TGG - chr2.1:41826897-41826916 None:intergenic 25.0%
! TTTATAGAAAGGGAATATCT+TGG + chr2.1:41829125-41829144 MS.gene90576:intron 25.0%
! TTTCATATAGGAATGAAACA+AGG - chr2.1:41828874-41828893 None:intergenic 25.0%
!! AGTTTGAGTTCAATTGTTAA+TGG - chr2.1:41828062-41828081 None:intergenic 25.0%
!! TTAGAATTTAAGAAAGCACA+TGG - chr2.1:41829963-41829982 None:intergenic 25.0%
!! TTTTCAAAACATGTAGTCAT+GGG + chr2.1:41831038-41831057 MS.gene90576:intron 25.0%
!!! GATTTGTTAGTTTATTCATG+AGG + chr2.1:41827882-41827901 MS.gene90576:intron 25.0%
!!! GTCAAAAAAGTTGATGTATT+TGG - chr2.1:41827149-41827168 None:intergenic 25.0%
!!! TATAATTTAGTTCTTCTGCA+TGG + chr2.1:41828793-41828812 MS.gene90576:intron 25.0%
!!! TTTTTCAAAACATGTAGTCA+TGG + chr2.1:41831037-41831056 MS.gene90576:intron 25.0%
AACTTACAAGTTAAGACCAA+CGG - chr2.1:41828180-41828199 None:intergenic 30.0%
AAGTAGGGGAAATAAGAATA+AGG + chr2.1:41829061-41829080 MS.gene90576:intron 30.0%
AATTAAGGAACGAGTTAACT+TGG + chr2.1:41826822-41826841 MS.gene90576:intron 30.0%
AGACATATTACTTACAGCAT+TGG - chr2.1:41829830-41829849 None:intergenic 30.0%
AGTAGGGGAAATAAGAATAA+GGG + chr2.1:41829062-41829081 MS.gene90576:intron 30.0%
ATATGTGTGAACCTAATACA+AGG + chr2.1:41830299-41830318 MS.gene90576:intron 30.0%
ATCAACTGAACTTGATTCAA+AGG - chr2.1:41829764-41829783 None:intergenic 30.0%
ATCGGTGTAATTATATGTGT+CGG + chr2.1:41828284-41828303 MS.gene90576:intron 30.0%
ATGACCGATATTATTGTTGT+AGG + chr2.1:41829897-41829916 MS.gene90576:intron 30.0%
ATGACTGTATTGCACATTAT+AGG - chr2.1:41830578-41830597 None:intergenic 30.0%
ATGTCACCTCAACAAATAAA+TGG - chr2.1:41828738-41828757 None:intergenic 30.0%
ATGTTGAAGTTCAACCAAAT+CGG + chr2.1:41828530-41828549 MS.gene90576:CDS 30.0%
CAATAATGAACATCTTCAGA+AGG - chr2.1:41831374-41831393 None:intergenic 30.0%
CATGCCTACAACAATAATAT+CGG - chr2.1:41829904-41829923 None:intergenic 30.0%
CTAAAAAATTGTATCGAAGG+AGG - chr2.1:41827452-41827471 None:intergenic 30.0%
CTTTATAATGCAGTTCAGAA+TGG + chr2.1:41829392-41829411 MS.gene90576:intron 30.0%
GAAAGTGGGATTTAGTAAAA+AGG - chr2.1:41826668-41826687 None:intergenic 30.0%
GGAAGAAATACAGAACTTTA+GGG - chr2.1:41827487-41827506 None:intergenic 30.0%
GGACTAAAAAATTGTATCGA+AGG - chr2.1:41827455-41827474 None:intergenic 30.0%
GGTACAAAAAGAGAGATATA+TGG - chr2.1:41829287-41829306 None:intergenic 30.0%
GTCAAGTTTCAACTTCTTAA+AGG + chr2.1:41831180-41831199 MS.gene90576:intron 30.0%
GTTTCATTCCTATATGAAAG+AGG + chr2.1:41828875-41828894 MS.gene90576:CDS 30.0%
TAACGTTACACTCTGAATTA+AGG + chr2.1:41826807-41826826 MS.gene90576:intron 30.0%
TATTAGGTTCACACATATTC+TGG - chr2.1:41830297-41830316 None:intergenic 30.0%
TATTTAAGAACTTCACCAAG+TGG - chr2.1:41828824-41828843 None:intergenic 30.0%
TCAACTGAACTTGATTCAAA+GGG - chr2.1:41829763-41829782 None:intergenic 30.0%
TCAATCTCTATCTTCAAATG+AGG + chr2.1:41830715-41830734 MS.gene90576:intron 30.0%
TCATATAGGAATGAAACAAG+GGG - chr2.1:41828872-41828891 None:intergenic 30.0%
TGATGAAAACCACAATCTTT+GGG + chr2.1:41829855-41829874 MS.gene90576:intron 30.0%
TGGAAGAAATACAGAACTTT+AGG - chr2.1:41827488-41827507 None:intergenic 30.0%
TGTTAACTGATACACAACTA+AGG + chr2.1:41826900-41826919 MS.gene90576:intron 30.0%
TTGATGAAAACCACAATCTT+TGG + chr2.1:41829854-41829873 MS.gene90576:intron 30.0%
TTTGATTATTAAGAGGGTGA+AGG - chr2.1:41826623-41826642 None:intergenic 30.0%
! AACCATGACTTTTTGTAAGT+GGG - chr2.1:41830755-41830774 None:intergenic 30.0%
! AGAGTCGGTATTTTATAAGT+AGG + chr2.1:41829045-41829064 MS.gene90576:intron 30.0%
! AGTCGGTATTTTATAAGTAG+GGG + chr2.1:41829047-41829066 MS.gene90576:intron 30.0%
! ATATTACTTACAGCATTGGA+GGG - chr2.1:41829826-41829845 None:intergenic 30.0%
! ATTAGCATGATAGTTTGTGT+TGG + chr2.1:41830010-41830029 MS.gene90576:intron 30.0%
! CTTTTGCTTAAAATTGAGAC+CGG - chr2.1:41827086-41827105 None:intergenic 30.0%
! GAGTCGGTATTTTATAAGTA+GGG + chr2.1:41829046-41829065 MS.gene90576:intron 30.0%
! GATGTATTTGGTCTAGATTT+TGG - chr2.1:41827137-41827156 None:intergenic 30.0%
! GATTCACAACAAATCCATTT+TGG + chr2.1:41829224-41829243 MS.gene90576:intron 30.0%
! TAATGAAATCGTAGCATTGA+CGG - chr2.1:41829554-41829573 None:intergenic 30.0%
! TGTGAATCTAGAGCAATAAA+AGG - chr2.1:41829212-41829231 None:intergenic 30.0%
! TTCCAGATTTGGCAAATTTT+CGG - chr2.1:41829488-41829507 None:intergenic 30.0%
!! AAAGATCTTTTTGTTTGCAG+AGG + chr2.1:41831659-41831678 MS.gene90576:intron 30.0%
!! ATAGTTTGTGTTGGTCATTT+TGG + chr2.1:41830019-41830038 MS.gene90576:intron 30.0%
!! CGATTTGCTTTTGTAAGAAT+CGG - chr2.1:41830135-41830154 None:intergenic 30.0%
!! TAGTTTGTGTTGGTCATTTT+GGG + chr2.1:41830020-41830039 MS.gene90576:intron 30.0%
AAACTCGCAAACAAAGTCTA+AGG + chr2.1:41827543-41827562 MS.gene90576:intron 35.0%
AAATCGTACACTAGCAAAGA+CGG + chr2.1:41828469-41828488 MS.gene90576:CDS 35.0%
AACTAAGGAACGAGTTAACT+TGG + chr2.1:41826915-41826934 MS.gene90576:intron 35.0%
AACTCGCAAACAAAGTCTAA+GGG + chr2.1:41827544-41827563 MS.gene90576:intron 35.0%
ACTGTGTCTAAACCTTTATC+AGG + chr2.1:41828843-41828862 MS.gene90576:intron 35.0%
ACTTACAAGTTAAGACCAAC+GGG - chr2.1:41828179-41828198 None:intergenic 35.0%
AGAAACATCTGCTCTTACAA+GGG - chr2.1:41829734-41829753 None:intergenic 35.0%
AGTTCTGTATTTCTTCCACT+TGG + chr2.1:41827490-41827509 MS.gene90576:intron 35.0%
ATAACTCACAACAAAAGGCA+AGG - chr2.1:41831398-41831417 None:intergenic 35.0%
ATAGAAAGGGAATATCTTGG+AGG + chr2.1:41829128-41829147 MS.gene90576:intron 35.0%
ATTACATTTACCCCACTCTA+AGG + chr2.1:41827214-41827233 MS.gene90576:intron 35.0%
CAAAGTTATGTATGCACGTT+AGG + chr2.1:41830657-41830676 MS.gene90576:intron 35.0%
CACTTACAAAAAGTCATGGT+TGG + chr2.1:41830754-41830773 MS.gene90576:intron 35.0%
CATTCCTATATGAAAGAGGT+TGG + chr2.1:41828879-41828898 MS.gene90576:CDS 35.0%
CTAAAAAGTTCAGTCCGATT+TGG - chr2.1:41828547-41828566 None:intergenic 35.0%
CTTAATGACTTTGCAACTTC+AGG + chr2.1:41828404-41828423 MS.gene90576:intron 35.0%
CTTTAGTTACGACAATGAAG+TGG - chr2.1:41830194-41830213 None:intergenic 35.0%
GCACAATGTCATATGATAAG+TGG - chr2.1:41830049-41830068 None:intergenic 35.0%
GGGATTTAGTAAAAAGGTGA+GGG - chr2.1:41826662-41826681 None:intergenic 35.0%
GTAGGGGAAATAAGAATAAG+GGG + chr2.1:41829063-41829082 MS.gene90576:intron 35.0%
GTGTGAGTCATTAACCAAAA+TGG - chr2.1:41829241-41829260 None:intergenic 35.0%
GTTAAATAAGAAATGGGCCT+AGG + chr2.1:41830390-41830409 MS.gene90576:intron 35.0%
TAAAGCAATTACTCCAGAGT+AGG - chr2.1:41829511-41829530 None:intergenic 35.0%
TAAAGGAGGAAAACAATACG+TGG - chr2.1:41829598-41829617 None:intergenic 35.0%
TAACAAATCATTAGCCCCAA+GGG - chr2.1:41827871-41827890 None:intergenic 35.0%
TACCCACTTACAAAAAGTCA+TGG + chr2.1:41830750-41830769 MS.gene90576:intron 35.0%
TAGAAACATCTGCTCTTACA+AGG - chr2.1:41829735-41829754 None:intergenic 35.0%
TAGACATAATCGGTTAGAGT+CGG + chr2.1:41829030-41829049 MS.gene90576:intron 35.0%
TCATATGAAAATTCGGGTCA+GGG - chr2.1:41830993-41831012 None:intergenic 35.0%
TCTGTTCATTTGAGAGTTTG+TGG + chr2.1:41829090-41829109 MS.gene90576:intron 35.0%
TGAAGTGTAACGAAGAAAAG+TGG - chr2.1:41831254-41831273 None:intergenic 35.0%
TGAGAAGTTACTATCACATG+AGG + chr2.1:41828668-41828687 MS.gene90576:intron 35.0%
TGGGATTTAGTAAAAAGGTG+AGG - chr2.1:41826663-41826682 None:intergenic 35.0%
TTAAGTACGAAGCAGGATAA+AGG + chr2.1:41828095-41828114 MS.gene90576:CDS 35.0%
TTACACTTCATCAACTTCCT+GGG + chr2.1:41831264-41831283 MS.gene90576:CDS 35.0%
TTGTAAGAGCAGATGTTTCT+AGG + chr2.1:41829734-41829753 MS.gene90576:CDS 35.0%
! AAAAAGCATACCTCTTCATC+AGG - chr2.1:41828938-41828957 None:intergenic 35.0%
! AAAACCACAATCTTTGGGTT+GGG + chr2.1:41829860-41829879 MS.gene90576:intron 35.0%
! AAATACAGAACTTTAGGGAG+GGG - chr2.1:41827482-41827501 None:intergenic 35.0%
! AGAAATACAGAACTTTAGGG+AGG - chr2.1:41827484-41827503 None:intergenic 35.0%
! CAAATCGGACTGAACTTTTT+AGG + chr2.1:41828545-41828564 MS.gene90576:CDS 35.0%
! CAACCATGACTTTTTGTAAG+TGG - chr2.1:41830756-41830775 None:intergenic 35.0%
! CATATTACTTACAGCATTGG+AGG - chr2.1:41829827-41829846 None:intergenic 35.0%
! GAAATACAGAACTTTAGGGA+GGG - chr2.1:41827483-41827502 None:intergenic 35.0%
! GTAATTATATGTGTCGGTGT+CGG + chr2.1:41828290-41828309 MS.gene90576:intron 35.0%
! TCCAGATTTGGCAAATTTTC+GGG - chr2.1:41829487-41829506 None:intergenic 35.0%
! TGAACTCAAACTTTTCCTTC+AGG + chr2.1:41828070-41828089 MS.gene90576:intron 35.0%
! TGAATCAAGTTCAGTTGATG+CGG + chr2.1:41829765-41829784 MS.gene90576:CDS 35.0%
! TTAGACTTTGTTTGCGAGTT+TGG - chr2.1:41827544-41827563 None:intergenic 35.0%
!! GTTGGTCTTAACTTGTAAGT+TGG + chr2.1:41828179-41828198 MS.gene90576:intron 35.0%
!!! GGTGTTTTGGTAGACATAAT+CGG + chr2.1:41829020-41829039 MS.gene90576:intron 35.0%
AAACAAAGAGCCTTAGAGTG+GGG - chr2.1:41827227-41827246 None:intergenic 40.0%
AAAGACCTTTGCACTTCATG+TGG + chr2.1:41831721-41831740 MS.gene90576:CDS 40.0%
AACAAATCATTAGCCCCAAG+GGG - chr2.1:41827870-41827889 None:intergenic 40.0%
AAGAGTTTACCTCTCTGAAC+AGG - chr2.1:41831297-41831316 None:intergenic 40.0%
AAGGAAGAAATGAGAAGCAG+CGG - chr2.1:41826604-41826623 None:intergenic 40.0%
AATCAGATATCCTCACGCAA+AGG - chr2.1:41829670-41829689 None:intergenic 40.0%
AATCGTACACTAGCAAAGAC+GGG + chr2.1:41828470-41828489 MS.gene90576:CDS 40.0%
ACTTCAGGTCAGCAATATAC+AGG + chr2.1:41828419-41828438 MS.gene90576:intron 40.0%
AGGCACGAATATTGAACCTT+TGG - chr2.1:41826716-41826735 None:intergenic 40.0%
ATCAGATATCCTCACGCAAA+GGG - chr2.1:41829669-41829688 None:intergenic 40.0%
CAAACAAAGAGCCTTAGAGT+GGG - chr2.1:41827228-41827247 None:intergenic 40.0%
CAACATGTTGAATGCAAGTC+CGG + chr2.1:41827825-41827844 MS.gene90576:intron 40.0%
CGTCAAAATTTCAGGCAAAG+TGG + chr2.1:41828902-41828921 MS.gene90576:CDS 40.0%
CTAACAAATCATTAGCCCCA+AGG - chr2.1:41827872-41827891 None:intergenic 40.0%
CTAAGATGACACCTCATGAA+CGG + chr2.1:41831543-41831562 MS.gene90576:intron 40.0%
CTCATATGAAAATTCGGGTC+AGG - chr2.1:41830994-41831013 None:intergenic 40.0%
GAAAACCACAATCTTTGGGT+TGG + chr2.1:41829859-41829878 MS.gene90576:intron 40.0%
GACTTTATGACCTCAAGAGA+CGG - chr2.1:41831511-41831530 None:intergenic 40.0%
GCTTCGTACTTAAATCCTGA+AGG - chr2.1:41828088-41828107 None:intergenic 40.0%
GGAAAAATAGAAGGACCAAG+TGG - chr2.1:41827508-41827527 None:intergenic 40.0%
GGCACGAATATTGAACCTTT+GGG - chr2.1:41826715-41826734 None:intergenic 40.0%
GTGCATTACAACTACAATGC+TGG - chr2.1:41828964-41828983 None:intergenic 40.0%
GTTACACTTCATCAACTTCC+TGG + chr2.1:41831263-41831282 MS.gene90576:CDS 40.0%
TAACCCACCAAAATTGGCAT+CGG - chr2.1:41830847-41830866 None:intergenic 40.0%
TAAGACCACATGAAGTGCAA+AGG - chr2.1:41831729-41831748 None:intergenic 40.0%
TAGTCAATACTCCGTTCATG+AGG - chr2.1:41831557-41831576 None:intergenic 40.0%
TAGTTCTCTTAGGGTGTGTT+TGG - chr2.1:41827788-41827807 None:intergenic 40.0%
TATGCATGAGCTATGAAGCA+CGG + chr2.1:41828207-41828226 MS.gene90576:intron 40.0%
TCAGGATTTAAGTACGAAGC+AGG + chr2.1:41828088-41828107 MS.gene90576:intron 40.0%
TCCCGAAAATTTGCCAAATC+TGG + chr2.1:41829483-41829502 MS.gene90576:CDS 40.0%
TCTTAGTACACGGGTGATTT+CGG - chr2.1:41831209-41831228 None:intergenic 40.0%
TGCTTAAAATTGAGACCGGA+GGG - chr2.1:41827082-41827101 None:intergenic 40.0%
TGTGTTTGGATTGAGGGTTT+AGG - chr2.1:41827774-41827793 None:intergenic 40.0%
TTAGGGTGTGTTTGGATTGA+GGG - chr2.1:41827780-41827799 None:intergenic 40.0%
TTGATAAGAAAAGGTCCCGT+TGG + chr2.1:41828161-41828180 MS.gene90576:CDS 40.0%
TTGCTAGCACTCCTTGTATT+AGG - chr2.1:41830313-41830332 None:intergenic 40.0%
TTGCTTAAAATTGAGACCGG+AGG - chr2.1:41827083-41827102 None:intergenic 40.0%
TTTGGATTGAGGGTTTAGGA+GGG - chr2.1:41827770-41827789 None:intergenic 40.0%
! AATACAGAACTTTAGGGAGG+GGG - chr2.1:41827481-41827500 None:intergenic 40.0%
! ACAAAGTCTAAGGGTGTGTT+TGG + chr2.1:41827553-41827572 MS.gene90576:intron 40.0%
! ACGGGACCTTTTCTTATCAA+TGG - chr2.1:41828161-41828180 None:intergenic 40.0%
! ACTTTGTTTGCGAGTTTGGA+GGG - chr2.1:41827540-41827559 None:intergenic 40.0%
! AGAAGTGGTGGAGTATTTGT+TGG + chr2.1:41831226-41831245 MS.gene90576:CDS 40.0%
! ATTGTATCGAAGGAGGGTTT+TGG - chr2.1:41827445-41827464 None:intergenic 40.0%
! CTCTTTGTTTGGGAGTTTGA+AGG + chr2.1:41827237-41827256 MS.gene90576:intron 40.0%
! GCTTTGGGTGGAAAATATAG+GGG + chr2.1:41827269-41827288 MS.gene90576:intron 40.0%
! TTGTATCGAAGGAGGGTTTT+GGG - chr2.1:41827444-41827463 None:intergenic 40.0%
!! AAACCACAATCTTTGGGTTG+GGG + chr2.1:41829861-41829880 MS.gene90576:intron 40.0%
!! AGTAAAAAGGTGAGGGCATT+TGG - chr2.1:41826655-41826674 None:intergenic 40.0%
!! CACTCTAAGGCTCTTTGTTT+GGG + chr2.1:41827227-41827246 MS.gene90576:intron 40.0%
!! GAGGGCTTTGGAAAAATAGA+AGG - chr2.1:41827517-41827536 None:intergenic 40.0%
!! GGCTTTGGGTGGAAAATATA+GGG + chr2.1:41827268-41827287 MS.gene90576:intron 40.0%
!! GTAAAAAGGTGAGGGCATTT+GGG - chr2.1:41826654-41826673 None:intergenic 40.0%
!! TAAAAAGGTGAGGGCATTTG+GGG - chr2.1:41826653-41826672 None:intergenic 40.0%
AACAAGGGGACTCCTGATAA+AGG - chr2.1:41828858-41828877 None:intergenic 45.0%
AACCCACCAAAATTGGCATC+GGG - chr2.1:41830846-41830865 None:intergenic 45.0%
AATGCACTATGAAGCACGGA+CGG - chr2.1:41828329-41828348 None:intergenic 45.0%
ACAATCAGACCACCTTTAGC+AGG - chr2.1:41829435-41829454 None:intergenic 45.0%
ACACACCCTAAGAGAACTAG+TGG + chr2.1:41827789-41827808 MS.gene90576:intron 45.0%
ACATCACACAAAGGAAGCTG+CGG + chr2.1:41829261-41829280 MS.gene90576:intron 45.0%
AGCTAGAGGTTTCCTTCCTT+TGG - chr2.1:41827048-41827067 None:intergenic 45.0%
AGCTTAGTAAGTACTCCCTC+CGG + chr2.1:41827064-41827083 MS.gene90576:intron 45.0%
AGGCACAATGTTGACAACTC+AGG - chr2.1:41831354-41831373 None:intergenic 45.0%
AGGTCAGCAATATACAGGTC+TGG + chr2.1:41828424-41828443 MS.gene90576:intron 45.0%
ATCACCCGTGTACTAAGAAG+TGG + chr2.1:41831211-41831230 MS.gene90576:CDS 45.0%
ATGGGCCTAGGCTATTTACT+TGG + chr2.1:41830402-41830421 MS.gene90576:intron 45.0%
CCAAACAAAGAGCCTTAGAG+TGG - chr2.1:41827229-41827248 None:intergenic 45.0%
CCCTAATGCACTATGAAGCA+CGG - chr2.1:41828333-41828352 None:intergenic 45.0%
CCGTGCTTCATAGTGCATTA+GGG + chr2.1:41828330-41828349 MS.gene90576:intron 45.0%
CTCCACCACTTCTTAGTACA+CGG - chr2.1:41831219-41831238 None:intergenic 45.0%
CTCTATTAGACCAACCCCTT+GGG + chr2.1:41827853-41827872 MS.gene90576:intron 45.0%
CTGATTGTCGATGTTAGCTG+TGG + chr2.1:41829447-41829466 MS.gene90576:CDS 45.0%
CTTAGGGTGTGTTTGGATTG+AGG - chr2.1:41827781-41827800 None:intergenic 45.0%
GACGCCAACCTCTTTCATAT+AGG - chr2.1:41828886-41828905 None:intergenic 45.0%
GACTCACACACATCACACAA+AGG + chr2.1:41829252-41829271 MS.gene90576:intron 45.0%
GAGGTTGGCGTCAAAATTTC+AGG + chr2.1:41828894-41828913 MS.gene90576:CDS 45.0%
GAGTACTTTGAGCCTGCTAA+AGG + chr2.1:41829420-41829439 MS.gene90576:CDS 45.0%
GCTTCATAGTGCATTAGGGA+AGG + chr2.1:41828334-41828353 MS.gene90576:intron 45.0%
GGTCAGGGAAAGAAATTTGG+AGG - chr2.1:41830978-41830997 None:intergenic 45.0%
GTTTGGATTGAGGGTTTAGG+AGG - chr2.1:41827771-41827790 None:intergenic 45.0%
TAATGTTTCCCCTTTGCGTG+AGG + chr2.1:41829657-41829676 MS.gene90576:intron 45.0%
TACTTTGAGCCTGCTAAAGG+TGG + chr2.1:41829423-41829442 MS.gene90576:CDS 45.0%
TCAGATATCCTCACGCAAAG+GGG - chr2.1:41829668-41829687 None:intergenic 45.0%
TCCACCACTTCTTAGTACAC+GGG - chr2.1:41831218-41831237 None:intergenic 45.0%
TCCAGAGTAGGTTCCAGATT+TGG - chr2.1:41829499-41829518 None:intergenic 45.0%
TCCGTGCTTCATAGTGCATT+AGG + chr2.1:41828329-41828348 MS.gene90576:intron 45.0%
TCGGGTCAGGGAAAGAAATT+TGG - chr2.1:41830981-41831000 None:intergenic 45.0%
TCTATTAGACCAACCCCTTG+GGG + chr2.1:41827854-41827873 MS.gene90576:intron 45.0%
TGACACTCTAGTCCAAAGGA+AGG + chr2.1:41827033-41827052 MS.gene90576:intron 45.0%
TGAGCTATGAAGCACGGATA+CGG + chr2.1:41828213-41828232 MS.gene90576:intron 45.0%
TGGATCTGACAGTGACTTCT+GGG + chr2.1:41828497-41828516 MS.gene90576:CDS 45.0%
TGTGTTTGGATCGAGGGTTT+AGG + chr2.1:41827567-41827586 MS.gene90576:intron 45.0%
TGTTTGCAGAGGTCTTCTCT+AGG + chr2.1:41831670-41831689 MS.gene90576:intron 45.0%
TTACGGCTCAGAAGCCATAA+CGG + chr2.1:41831788-41831807 MS.gene90576:CDS 45.0%
TTCTGCATGGTTCAACCACT+TGG + chr2.1:41828806-41828825 MS.gene90576:intron 45.0%
TTGGATTGAGGGTTTAGGAG+GGG - chr2.1:41827769-41827788 None:intergenic 45.0%
TTGGATTGTTCTTGCCCAAG+TGG + chr2.1:41826934-41826953 MS.gene90576:intron 45.0%
TTGGTCTAATAGAGCAGGAC+CGG - chr2.1:41827847-41827866 None:intergenic 45.0%
TTTGGATCGAGGGTTTAGGA+GGG + chr2.1:41827571-41827590 MS.gene90576:intron 45.0%
! ACAAAAAGTCATGGTTGGCC+TGG + chr2.1:41830759-41830778 MS.gene90576:intron 45.0%
! ATACAGAACTTTAGGGAGGG+GGG - chr2.1:41827480-41827499 None:intergenic 45.0%
! ATACTCCCCGATGCCAATTT+TGG + chr2.1:41830837-41830856 MS.gene90576:intron 45.0%
! CTCCTCCACTAGTTCTCTTA+GGG - chr2.1:41827797-41827816 None:intergenic 45.0%
! CTTTGTTTGCGAGTTTGGAG+GGG - chr2.1:41827539-41827558 None:intergenic 45.0%
! GACTTTGTTTGCGAGTTTGG+AGG - chr2.1:41827541-41827560 None:intergenic 45.0%
! TAAGGGTGTGTTTGGATCGA+GGG + chr2.1:41827561-41827580 MS.gene90576:intron 45.0%
! TCTCCTCCACTAGTTCTCTT+AGG - chr2.1:41827798-41827817 None:intergenic 45.0%
! TGAACCTTTGGGTTTGAGAG+CGG - chr2.1:41826704-41826723 None:intergenic 45.0%
! TGTATCGAAGGAGGGTTTTG+GGG - chr2.1:41827443-41827462 None:intergenic 45.0%
!! AACCACAATCTTTGGGTTGG+GGG + chr2.1:41829862-41829881 MS.gene90576:intron 45.0%
!! CCACTCTAAGGCTCTTTGTT+TGG + chr2.1:41827226-41827245 MS.gene90576:intron 45.0%
!! GAGTATCGAACCTGAGATCT+TGG - chr2.1:41830823-41830842 None:intergenic 45.0%
!! GGGAGTACTTACTAAGCTAG+AGG - chr2.1:41827062-41827081 None:intergenic 45.0%
!! GGGCTTTGGGTGGAAAATAT+AGG + chr2.1:41827267-41827286 MS.gene90576:intron 45.0%
!!! GTTTTGGGGGTGGTTTTAGA+TGG - chr2.1:41827429-41827448 None:intergenic 45.0%
AATCATTAGCCCCAAGGGGT+TGG - chr2.1:41827866-41827885 None:intergenic 50.0%
ACCCACCAAAATTGGCATCG+GGG - chr2.1:41830845-41830864 None:intergenic 50.0%
ACCCGTGTACTAAGAAGTGG+TGG + chr2.1:41831214-41831233 MS.gene90576:CDS 50.0%
AGACTCCACAACAACAGCAG+AGG - chr2.1:41826739-41826758 None:intergenic 50.0%
ATCGAACCTGAGATCTTGGC+AGG - chr2.1:41830819-41830838 None:intergenic 50.0%
ATTGAGGGTTTAGGAGGGGA+AGG - chr2.1:41827765-41827784 None:intergenic 50.0%
CACCCTAAGAGAACTAGTGG+AGG + chr2.1:41827792-41827811 MS.gene90576:intron 50.0%
CACTAGCAAAGACGGGTATC+TGG + chr2.1:41828477-41828496 MS.gene90576:CDS 50.0%
CAGAGGTCTTCTCTAGGCTA+TGG + chr2.1:41831676-41831695 MS.gene90576:intron 50.0%
CAGTGTCTAGTGTCTGAGAG+TGG + chr2.1:41831478-41831497 MS.gene90576:intron 50.0%
CATACCTCTTCATCAGGACC+AGG - chr2.1:41828932-41828951 None:intergenic 50.0%
CGGATGACACTCTAGTCCAA+AGG + chr2.1:41827029-41827048 MS.gene90576:intron 50.0%
CTGGATCTGACAGTGACTTC+TGG + chr2.1:41828496-41828515 MS.gene90576:CDS 50.0%
CTTTCCTGGTCCTGATGAAG+AGG + chr2.1:41828925-41828944 MS.gene90576:CDS 50.0%
GCGGTCCAAGTAAATAGCCT+AGG - chr2.1:41830410-41830429 None:intergenic 50.0%
GCTCTATTAGACCAACCCCT+TGG + chr2.1:41827852-41827871 MS.gene90576:intron 50.0%
GGGGACTAACCCACCAAAAT+TGG - chr2.1:41830853-41830872 None:intergenic 50.0%
GTCGATGTTAGCTGTGGAAG+TGG + chr2.1:41829453-41829472 MS.gene90576:CDS 50.0%
GTTTGGATCGAGGGTTTAGG+AGG + chr2.1:41827570-41827589 MS.gene90576:intron 50.0%
GTTTGGGAGTTTGAAGGCGA+AGG + chr2.1:41827243-41827262 MS.gene90576:intron 50.0%
TAAACTCGGTATCCGCCACA+AGG - chr2.1:41830912-41830931 None:intergenic 50.0%
TACCCCCAACCCAAAGATTG+TGG - chr2.1:41829867-41829886 None:intergenic 50.0%
TGGTTGAACTCCGTCTCTTG+AGG + chr2.1:41831498-41831517 MS.gene90576:intron 50.0%
TGTTGTTGTGGAGTCTCCGT+CGG + chr2.1:41826743-41826762 MS.gene90576:CDS 50.0%
TTCAGGCAAAGTGGCTTTCC+TGG + chr2.1:41828911-41828930 MS.gene90576:CDS 50.0%
TTCTCCGCTCTCAAACCCAA+AGG + chr2.1:41826697-41826716 MS.gene90576:CDS 50.0%
TTGAGGGTTTAGGAGGGGAA+GGG - chr2.1:41827764-41827783 None:intergenic 50.0%
TTGGATCGAGGGTTTAGGAG+GGG + chr2.1:41827572-41827591 MS.gene90576:intron 50.0%
! CTAAGGGTGTGTTTGGATCG+AGG + chr2.1:41827560-41827579 MS.gene90576:intron 50.0%
! CTTACAGCATTGGAGGGAGA+TGG - chr2.1:41829820-41829839 None:intergenic 50.0%
! GCCAAATCTGGAACCTACTC+TGG + chr2.1:41829495-41829514 MS.gene90576:CDS 50.0%
! TACAGAACTTTAGGGAGGGG+GGG - chr2.1:41827479-41827498 None:intergenic 50.0%
! TCAGTTGATGCGGTTCATGC+TGG + chr2.1:41829775-41829794 MS.gene90576:CDS 50.0%
! TTTGGGTTTGAGAGCGGAGA+AGG - chr2.1:41826698-41826717 None:intergenic 50.0%
!! AAAAGTCATGGTTGGCCTGG+TGG + chr2.1:41830762-41830781 MS.gene90576:intron 50.0%
!! AAAGTCATGGTTGGCCTGGT+GGG + chr2.1:41830763-41830782 MS.gene90576:intron 50.0%
!! AGGGGTTGGTCTAATAGAGC+AGG - chr2.1:41827852-41827871 None:intergenic 50.0%
!! GTATCGAAGGAGGGTTTTGG+GGG - chr2.1:41827442-41827461 None:intergenic 50.0%
!! TCCCCGATGCCAATTTTGGT+GGG + chr2.1:41830841-41830860 MS.gene90576:intron 50.0%
ACCCCTCGAATCGTTCCTTG+TGG + chr2.1:41830894-41830913 MS.gene90576:intron 55.0%
AGCAGCGGTAGTAGCAGAAG+CGG - chr2.1:41826589-41826608 None:intergenic 55.0%
AGCAGTGTCTGTGTCGTGTC+CGG - chr2.1:41828242-41828261 None:intergenic 55.0%
ATCGAGGGTTTAGGAGGGGA+GGG + chr2.1:41827576-41827595 MS.gene90576:intron 55.0%
CCTCGAATCGTTCCTTGTGG+CGG + chr2.1:41830897-41830916 MS.gene90576:intron 55.0%
CGCCACAAGGAACGATTCGA+GGG - chr2.1:41830899-41830918 None:intergenic 55.0%
CTCCACAACAACAGCAGAGG+AGG - chr2.1:41826736-41826755 None:intergenic 55.0%
GCCACAAGGAACGATTCGAG+GGG - chr2.1:41830898-41830917 None:intergenic 55.0%
GGCTTGGGATCTTGGAGTGT+GGG + chr2.1:41830789-41830808 MS.gene90576:intron 55.0%
GGGAGTTTGAAGGCGAAGGA+GGG + chr2.1:41827247-41827266 MS.gene90576:intron 55.0%
GTTTGCGAGTTTGGAGGGGA+GGG - chr2.1:41827535-41827554 None:intergenic 55.0%
TGAAGCACGGATACGGACAC+CGG + chr2.1:41828220-41828239 MS.gene90576:intron 55.0%
TGAAGGCGAAGGAGGGCTTT+GGG + chr2.1:41827254-41827273 MS.gene90576:intron 55.0%
TGCCTCCTCTGCTGTTGTTG+TGG + chr2.1:41826731-41826750 MS.gene90576:CDS 55.0%
TGGGAGTTTGAAGGCGAAGG+AGG + chr2.1:41827246-41827265 MS.gene90576:intron 55.0%
TGTTTGCGAGTTTGGAGGGG+AGG - chr2.1:41827536-41827555 None:intergenic 55.0%
TTGAAGGCGAAGGAGGGCTT+TGG + chr2.1:41827253-41827272 MS.gene90576:intron 55.0%
TTTGAGAGCGGAGAAGGCGA+GGG - chr2.1:41826692-41826711 None:intergenic 55.0%
! ACAGAACTTTAGGGAGGGGG+GGG - chr2.1:41827478-41827497 None:intergenic 55.0%
! CTCCCCGATGCCAATTTTGG+TGG + chr2.1:41830840-41830859 MS.gene90576:intron 55.0%
! TGGCTTGGGATCTTGGAGTG+TGG + chr2.1:41830788-41830807 MS.gene90576:intron 55.0%
!! AAGTCATGGTTGGCCTGGTG+GGG + chr2.1:41830764-41830783 MS.gene90576:intron 55.0%
!! CTGGTGCTGCTTTGCATTGC+TGG + chr2.1:41829794-41829813 MS.gene90576:CDS 55.0%
AGGGTTTAGGAGGGGAAGGG+AGG - chr2.1:41827761-41827780 None:intergenic 60.0%
CCGCCACAAGGAACGATTCG+AGG - chr2.1:41830900-41830919 None:intergenic 60.0%
GAGAAGGCGAGGGCGAAAGT+GGG - chr2.1:41826682-41826701 None:intergenic 60.0%
GAGTTTGGAGGGGAGGGCTT+TGG - chr2.1:41827529-41827548 None:intergenic 60.0%
GATCGAGGGTTTAGGAGGGG+AGG + chr2.1:41827575-41827594 MS.gene90576:intron 60.0%
GGGTTTAGGAGGGGAAGGGA+GGG - chr2.1:41827760-41827779 None:intergenic 60.0%
GGTGCTCCTGCCAAGATCTC+AGG + chr2.1:41830810-41830829 MS.gene90576:intron 60.0%
GGTTGCACGCCTGTTCAGAG+AGG + chr2.1:41831285-41831304 MS.gene90576:CDS 60.0%
GGTTTAGGAGGGGAAGGGAG+GGG - chr2.1:41827759-41827778 None:intergenic 60.0%
GTTTGAGAGCGGAGAAGGCG+AGG - chr2.1:41826693-41826712 None:intergenic 60.0%
TCTGAACAGGCGTGCAACCC+AGG - chr2.1:41831284-41831303 None:intergenic 60.0%
! AGAACTTTAGGGAGGGGGGG+GGG - chr2.1:41827476-41827495 None:intergenic 60.0%
! CAGAACTTTAGGGAGGGGGG+GGG - chr2.1:41827477-41827496 None:intergenic 60.0%
!! GGTGGGTTAGTCCCCACAAG+TGG + chr2.1:41830858-41830877 MS.gene90576:intron 60.0%
!! GTGGGGTTGGCTTGGGATCT+TGG + chr2.1:41830781-41830800 MS.gene90576:intron 60.0%
!!! TCGAAGGAGGGTTTTGGGGG+TGG - chr2.1:41827439-41827458 None:intergenic 60.0%
GAAGCACGGACGGACACGTG+TGG - chr2.1:41828319-41828338 None:intergenic 65.0%
GATCCCAAGCCAACCCCACC+AGG - chr2.1:41830780-41830799 None:intergenic 65.0%
GGAGAAGGCGAGGGCGAAAG+TGG - chr2.1:41826683-41826702 None:intergenic 65.0%
TAGGAGGGGAAGGGAGGGGA+GGG - chr2.1:41827755-41827774 None:intergenic 65.0%
TTAGGAGGGGAAGGGAGGGG+AGG - chr2.1:41827756-41827775 None:intergenic 65.0%
!! AGGCGAAGGAGGGCTTTGGG+TGG + chr2.1:41827257-41827276 MS.gene90576:intron 65.0%
!! CATGGTTGGCCTGGTGGGGT+TGG + chr2.1:41830768-41830787 MS.gene90576:intron 65.0%
!! TGGCCTGGTGGGGTTGGCTT+GGG + chr2.1:41830774-41830793 MS.gene90576:intron 65.0%
!! TTGGCCTGGTGGGGTTGGCT+TGG + chr2.1:41830773-41830792 MS.gene90576:intron 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 41826582 41831807 41826582 ID=MS.gene90576
chr2.1 mRNA 41826582 41831807 41826582 ID=MS.gene90576.t1;Parent=MS.gene90576
chr2.1 exon 41826582 41826764 41826582 ID=MS.gene90576.t1.exon1;Parent=MS.gene90576.t1
chr2.1 CDS 41826582 41826764 41826582 ID=cds.MS.gene90576.t1;Parent=MS.gene90576.t1
chr2.1 exon 41828092 41828192 41828092 ID=MS.gene90576.t1.exon2;Parent=MS.gene90576.t1
chr2.1 CDS 41828092 41828192 41828092 ID=cds.MS.gene90576.t1;Parent=MS.gene90576.t1
chr2.1 exon 41828426 41828566 41828426 ID=MS.gene90576.t1.exon3;Parent=MS.gene90576.t1
chr2.1 CDS 41828426 41828566 41828426 ID=cds.MS.gene90576.t1;Parent=MS.gene90576.t1
chr2.1 exon 41828865 41828946 41828865 ID=MS.gene90576.t1.exon4;Parent=MS.gene90576.t1
chr2.1 CDS 41828865 41828946 41828865 ID=cds.MS.gene90576.t1;Parent=MS.gene90576.t1
chr2.1 exon 41829405 41829598 41829405 ID=MS.gene90576.t1.exon5;Parent=MS.gene90576.t1
chr2.1 CDS 41829405 41829598 41829405 ID=cds.MS.gene90576.t1;Parent=MS.gene90576.t1
chr2.1 exon 41829723 41829834 41829723 ID=MS.gene90576.t1.exon6;Parent=MS.gene90576.t1
chr2.1 CDS 41829723 41829834 41829723 ID=cds.MS.gene90576.t1;Parent=MS.gene90576.t1
chr2.1 exon 41831202 41831306 41831202 ID=MS.gene90576.t1.exon7;Parent=MS.gene90576.t1
chr2.1 CDS 41831202 41831306 41831202 ID=cds.MS.gene90576.t1;Parent=MS.gene90576.t1
chr2.1 exon 41831679 41831807 41831679 ID=MS.gene90576.t1.exon8;Parent=MS.gene90576.t1
chr2.1 CDS 41831679 41831807 41831679 ID=cds.MS.gene90576.t1;Parent=MS.gene90576.t1
Gene Sequence

>MS.gene90576

ATGGCCGCTTCTGCTACTACCGCTGCTTCTCATTTCTTCCTTCACCCTCTTAATAATCAAATACAATTCCCCAAATGCCCTCACCTTTTTACTAAATCCCACTTTCGCCCTCGCCTTCTCCGCTCTCAAACCCAAAGGTTCAATATTCGTGCCTCCTCTGCTGTTGTTGTGGAGTCTCCGTCGGTATAAATTATAATTTTCCTTTTCCTTTTCATTTTCTCTATTTAACGTTACACTCTGAATTAAGGAACGAGTTAACTTGGATTGTTATTGTCATGTAATTAAGCTTATATGTTTTTTAGATTAGTTTATCCATTTTGTTAACTGATACACAACTAAGGAACGAGTTAACTTGGATTGTTCTTGCCCAAGTGGTTTAAATTTAGTTTGCCTAAATGGTTTAAATTTAGTTGTACAAATATCGTTTCTCTTAAAACTTAAGATCAACGGATGACACTCTAGTCCAAAGGAAGGAAACCTCTAGCTTAGTAAGTACTCCCTCCGGTCTCAATTTTAAGCAAAAGTTAGTCAAAGAAAATTGGTATATTTAGTCCAAAATCTAGACCAAATACATCAACTTTTTTGACCCGTTTTTTATTATATTTTAGACTGGAGTACTACTTACAAACTAAATTACATTTACCCCACTCTAAGGCTCTTTGTTTGGGAGTTTGAAGGCGAAGGAGGGCTTTGGGTGGAAAATATAGGGGAAAATAGAGAAATCTTTCACATTTTTTGAAAGAATGTTTTTTTAGAGAATGATAAATTAACGCTTATGATTAATATATTTTTAATTTCAACAATATTATAACAACATAGATTGAATTTAAAGAATTCATATAAACCATCTAAAACCACCCCCAAAACCCTCCTTCGATACAATTTTTTAGTCCCCCCCCCCTCCCTAAAGTTCTGTATTTCTTCCACTTGGTCCTTCTATTTTTCCAAAGCCCTCCCCTCCAAACTCGCAAACAAAGTCTAAGGGTGTGTTTGGATCGAGGGTTTAGGAGGGGAGGGTTTGATTTTCATTCTTAATTTACAAACACTATGAAATGTTTTTTAAAAAGTTAACATATTAACATGATAAACAATCATATAATACTTCAATCACACTTAATTTATTTTAGAAAAACATGTTATAGAGTCGGTAATTTTAAAAAGAAAATCAAACCCTCCCCTCCCTTCCCCTCCTAAACCCTCAATCCAAACACACCCTAAGAGAACTAGTGGAGGAGACTTGAATCAACATGTTGAATGCAAGTCCGGTCCTGCTCTATTAGACCAACCCCTTGGGGCTAATGATTTGTTAGTTTATTCATGAGGTGCTTTGTTATTTTGATCTTAGTCTGATCTTGCTCTTTTTCAACGCATTGTCTTTAAGTACATTGATATTTTGATTAGAAAGAATTCAAGATATTGGCAATTCAGTAAATTCAACAAGTATTATTTGTTTTGCTGATATAAATTTATATCAATTCCATTAACAATTGAACTCAAACTTTTCCTTCAGGATTTAAGTACGAAGCAGGATAAAGGAACACAAGTTGACTTATTCGCATGCCCTATATGTTATGAACCATTGATAAGAAAAGGTCCCGTTGGTCTTAACTTGTAAGTTGGCTTTATATGCATGAGCTATGAAGCACGGATACGGACACCGGACACGACACAGACACTGCTATTAATTTGAGAAATCACATATATCGGTGTAATTATATGTGTCGGTGTCGGATACCACACGTGTCCGTCCGTGCTTCATAGTGCATTAGGGAAGGTGTGTTCAGTTCTTTTTGTCACTAAAATCACGTCTCATTGTAATTTACTTAATGACTTTGCAACTTCAGGTCAGCAATATACAGGTCTGGTTTCAAGTGTAAGAGATGTCAAAAATCGTACACTAGCAAAGACGGGTATCTGGATCTGACAGTGACTTCTGGGTTGAGAGATTATGTTGAAGTTCAACCAAATCGGACTGAACTTTTTAGGTATAAATACAAAATAGATTGTTACATGGCATTATATTATATCATCTTGTATGAAGATCTCGTGATACTATATATTTTTCATATTAGTTGTATATACTTGATGAGAAGTTACTATCACATGAGGTACATACCAATATTTGTACAATATCCTTTTAAATATCCATTTTTCCATTTATTTGTTGAGGTGACATTTATGAGTTATTGTTCAAACATATTTGACACAAGTTATAATTTAGTTCTTCTGCATGGTTCAACCACTTGGTGAAGTTCTTAAATACTGTGTCTAAACCTTTATCAGGAGTCCCCTTGTTTCATTCCTATATGAAAGAGGTTGGCGTCAAAATTTCAGGCAAAGTGGCTTTCCTGGTCCTGATGAAGAGGTATGCTTTTTGTACCAGCATTGTAGTTGTAATGCACCCATACTTGAATAATATTTGTAGTTATTGTTTTAAAGGTGTTTTGGTAGACATAATCGGTTAGAGTCGGTATTTTATAAGTAGGGGAAATAAGAATAAGGGGACATTCTGTTCATTTGAGAGTTTGTGGTATGACTAATCCTTTATAGAAAGGGAATATCTTGGAGGAGAGATCTCTCTGCAATTTTATTCACCCGTTCAATAAAAGTTTTTTTGTTTGTTTCTGCCTTTTATTGCTCTAGATTCACAACAAATCCATTTTGGTTAATGACTCACACACATCACACAAAGGAAGCTGCGGCCATATATCTCTCTTTTTGTACCTTTTGAGCTTAATTAATAACATTTCAATATATTCTTAAGCACTTTTTCAAAATATATATATATATTGCTGAGCACTTCATATTTTCTTTATAATGCAGTTCAGAATGGCTCAAGAGTACTTTGAGCCTGCTAAAGGTGGTCTGATTGTCGATGTTAGCTGTGGAAGTGGTCTATTTTCCCGAAAATTTGCCAAATCTGGAACCTACTCTGGAGTAATTGCTTTAGATTTTTCTGAAAATATGCTCCGTCAATGCTACGATTTCATTAAGAAAGATGACACACTATCAACCACGTATTGTTTTCCTCCTTTACTTGATTTTGAATTTATTGCGGCCAACGAAGTATGAATTTAATGTTTCCCCTTTGCGTGAGGATATCTGATTGTGCTTAATACAAATTCATTTCTTTGTTTGCAGTAATCTTGCCCTTGTAAGAGCAGATGTTTCTAGGCTTCCCTTTGAATCAAGTTCAGTTGATGCGGTTCATGCTGGTGCTGCTTTGCATTGCTGGCCATCTCCCTCCAATGCTGTAAGTAATATGTCTTAGTTTGATGAAAACCACAATCTTTGGGTTGGGGGTACACTTTTAGAATGACCGATATTATTGTTGTAGGCATGCATATTAAAATCTTGAAAATTCTTTGTATTAAAGGACCATGTGCTTTCTTAAATTCTAAACAAGTGTGTCTCTGATTGCCTAATTAATTAGCATGATAGTTTGTGTTGGTCATTTTGGGTTACCACTTATCATATGACATTGTGCTGCATTTTGTGTAGAACTTTTTGCAGACTTTATCATTTGTGCTTCAAGCTAATATATTTTATGCCGATTCTTACAAAAGCAAATCGATTTTTAATTGATTGCTCTTAAGTTTTAAATGTTTACCACTTCATTGTCGTAACTAAAGTTCTGCTTCACAAAGTCAAGATTTCCACTTCTATAGATATTTGAATTCAACTTAAATATATTTCTGTTTTATAATATTGTCCAGAATATGTGTGAACCTAATACAAGGAGTGCTAGCAACTTATTGTTTGACACATTTTCTTATACTTTCAAATGTTGTGTTTTTTTATAGATCACGTTAAATAAGAAATGGGCCTAGGCTATTTACTTGGACCGCATAAAATTCACCAAATAATAGTTTATAAGAGTGATCTAATGAGTGTGTTGTATGTATTTCTCAAGTAATATTTTGTATTGCGGCAAATGTGCATAAGTAAAAATAGTTCTTGTTCCCTCCACAATTATATTTGTTGATTTACGTGCCTATAATGTGCAATACAGTCATGATACTTGCAAACAGACTTTTTTTTTTTTTTTTGTGTTTATACTATGCACGTTTATACACAAAGTTATGTATGCACGTTAGGTATAAAGTTAGTTAATAATGTAACAAATCTATGACTCAATCTCTATCTTCAAATGAGGATTTTATTTGTGTACCCACTTACAAAAAGTCATGGTTGGCCTGGTGGGGTTGGCTTGGGATCTTGGAGTGTGGGTGCTCCTGCCAAGATCTCAGGTTCGATACTCCCCGATGCCAATTTTGGTGGGTTAGTCCCCACAAGTGGACGGTTGGATTGGACCCCTCGAATCGTTCCTTGTGGCGGATACCGAGTTTAAAAAAAAATTACGTAACGTGTAGGTGCTCTAGTTATATGCACTCCTCCAAATTTCTTTCCCTGACCCGAATTTTCATATGAGAATTGTATTTGTATTTTCCCTAATTTTTCAAAACATGTAGTCATGGGATACCATTTCCTTAATATATAGATTTGAAATTATTTTCATGTCAATGTGGTTACCTTATCCTTGTGATTTACATTTCTATTTCACACTATTTAAACGAGGGTAATTTGTATAATGACACGTCAAGTTTCAACTTCTTAAAGGTTGCCGAAATCACCCGTGTACTAAGAAGTGGTGGAGTATTTGTTGGAACCACTTTTCTTCGTTACACTTCATCAACTTCCTGGGTTGCACGCCTGTTCAGAGAGGTAAACTCTTTATAATAATGATCTTTTATCTTTTGTCATAATAACCTGAGTTGTCAACATTGTGCCTTCTGAAGATGTTCATTATTGACCTTGCCTTTTGTTGTGAGTTATCATTTGTAACGATGACTACGTTTTCCCTTATCAAATTGATATTAATAGTCATTTTTACAACAGTGTCTAGTGTCTGAGAGTGGTTGAACTCCGTCTCTTGAGGTCATAAAGTCATGCTCTTAACACTAAGATGACACCTCATGAACGGAGTATTGACTACTTGATCATCTCATAAATCTACAAATGATATATATGTTCTTCAATTTAAAAAATTTCCCTTGAATCTAATTCAAGATGATTTAAAGATCTTTTTGTTTGCAGAGGTCTTCTCTAGGCTATGGCTACTTAACAGAAGAAGAAATCAAAGACCTTTGCACTTCATGTGGTCTTACAAATTACTCATGCAAAATTCAGAAGTCTTTTATTATGTTTACGGCTCAGAAGCCATAA

Protein sequence

>MS.gene90576.t1

MAASATTAASHFFLHPLNNQIQFPKCPHLFTKSHFRPRLLRSQTQRFNIRASSAVVVESPSDLSTKQDKGTQVDLFACPICYEPLIRKGPVGLNLSAIYRSGFKCKRCQKSYTSKDGYLDLTVTSGLRDYVEVQPNRTELFRSPLVSFLYERGWRQNFRQSGFPGPDEEFRMAQEYFEPAKGGLIVDVSCGSGLFSRKFAKSGTYSGVIALDFSENMLRQCYDFIKKDDTLSTTNLALVRADVSRLPFESSSVDAVHAGAALHCWPSPSNAVAEITRVLRSGGVFVGTTFLRYTSSTSWVARLFRERSSLGYGYLTEEEIKDLCTSCGLTNYSCKIQKSFIMFTAQKP