Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93341.t1 | XP_025673995.1 | 67.7 | 62 | 20 | 0 | 22 | 83 | 39 | 100 | 4.40E-12 | 80.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93341.t1 | A0A445L186 | 62.5 | 72 | 27 | 0 | 12 | 83 | 3 | 74 | 7.1e-12 | 79.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene93341 | 0.821975 | 3.03E-53 | -1.69E-46 |
| MS.gene049173 | MS.gene93341 | 0.837651 | 4.58E-57 | -1.69E-46 |
| MS.gene049217 | MS.gene93341 | 0.824265 | 8.86E-54 | -1.69E-46 |
| MS.gene049222 | MS.gene93341 | 0.820055 | 8.39E-53 | -1.69E-46 |
| MS.gene049285 | MS.gene93341 | 0.892101 | 2.16E-74 | -1.69E-46 |
| MS.gene049320 | MS.gene93341 | 0.864627 | 1.06E-64 | -1.69E-46 |
| MS.gene050163 | MS.gene93341 | 0.891113 | 5.34E-74 | -1.69E-46 |
| MS.gene050165 | MS.gene93341 | 0.879711 | 9.97E-70 | -1.69E-46 |
| MS.gene050333 | MS.gene93341 | 0.854602 | 1.10E-61 | -1.69E-46 |
| MS.gene050504 | MS.gene93341 | 0.841686 | 4.09E-58 | -1.69E-46 |
| MS.gene050518 | MS.gene93341 | 0.856283 | 3.57E-62 | -1.69E-46 |
| MS.gene050577 | MS.gene93341 | 0.803404 | 3.54E-49 | -1.69E-46 |
| MS.gene050612 | MS.gene93341 | 0.840875 | 6.68E-58 | -1.69E-46 |
| MS.gene050675 | MS.gene93341 | 0.813403 | 2.61E-51 | -1.69E-46 |
| MS.gene050699 | MS.gene93341 | 0.84691 | 1.61E-59 | -1.69E-46 |
| MS.gene050767 | MS.gene93341 | 0.840242 | 9.78E-58 | -1.69E-46 |
| MS.gene050770 | MS.gene93341 | 0.842721 | 2.17E-58 | -1.69E-46 |
| MS.gene050772 | MS.gene93341 | 0.822415 | 2.40E-53 | -1.69E-46 |
| MS.gene050986 | MS.gene93341 | 0.832217 | 1.07E-55 | -1.69E-46 |
| MS.gene05100 | MS.gene93341 | 0.87945 | 1.23E-69 | -1.69E-46 |
| MS.gene051228 | MS.gene93341 | 0.828695 | 7.79E-55 | -1.69E-46 |
| MS.gene051551 | MS.gene93341 | 0.827121 | 1.86E-54 | -1.69E-46 |
| MS.gene051810 | MS.gene93341 | 0.870838 | 1.08E-66 | -1.69E-46 |
| MS.gene051949 | MS.gene93341 | 0.85527 | 7.06E-62 | -1.69E-46 |
| MS.gene052271 | MS.gene93341 | 0.877512 | 5.92E-69 | -1.69E-46 |
| MS.gene052290 | MS.gene93341 | 0.811035 | 8.56E-51 | -1.69E-46 |
| MS.gene052379 | MS.gene93341 | 0.821992 | 3.01E-53 | -1.69E-46 |
| MS.gene053009 | MS.gene93341 | 0.803815 | 2.91E-49 | -1.69E-46 |
| MS.gene053104 | MS.gene93341 | 0.803185 | 3.93E-49 | -1.69E-46 |
| MS.gene053213 | MS.gene93341 | 0.853675 | 2.04E-61 | -1.69E-46 |
| MS.gene053286 | MS.gene93341 | 0.85488 | 9.17E-62 | -1.69E-46 |
| MS.gene053322 | MS.gene93341 | 0.854005 | 1.64E-61 | -1.69E-46 |
| MS.gene053632 | MS.gene93341 | 0.834278 | 3.29E-56 | -1.69E-46 |
| MS.gene054376 | MS.gene93341 | 0.806978 | 6.33E-50 | -1.69E-46 |
| MS.gene054600 | MS.gene93341 | 0.825778 | 3.89E-54 | -1.69E-46 |
| MS.gene054642 | MS.gene93341 | 0.889145 | 3.15E-73 | -1.69E-46 |
| MS.gene054954 | MS.gene93341 | 0.867104 | 1.75E-65 | -1.69E-46 |
| MS.gene055212 | MS.gene93341 | 0.809748 | 1.62E-50 | -1.69E-46 |
| MS.gene055362 | MS.gene93341 | 0.852187 | 5.44E-61 | -1.69E-46 |
| MS.gene055397 | MS.gene93341 | 0.857628 | 1.43E-62 | -1.69E-46 |
| MS.gene055499 | MS.gene93341 | 0.85135 | 9.40E-61 | -1.69E-46 |
| MS.gene055502 | MS.gene93341 | 0.828916 | 6.89E-55 | -1.69E-46 |
| MS.gene055636 | MS.gene93341 | 0.814829 | 1.26E-51 | -1.69E-46 |
| MS.gene055638 | MS.gene93341 | 0.833241 | 5.97E-56 | -1.69E-46 |
| MS.gene055647 | MS.gene93341 | 0.819817 | 9.52E-53 | -1.69E-46 |
| MS.gene055751 | MS.gene93341 | 0.801569 | 8.46E-49 | -1.69E-46 |
| MS.gene05592 | MS.gene93341 | 0.816612 | 5.05E-52 | -1.69E-46 |
| MS.gene055956 | MS.gene93341 | -0.829075 | 6.30E-55 | -1.69E-46 |
| MS.gene056083 | MS.gene93341 | 0.814033 | 1.89E-51 | -1.69E-46 |
| MS.gene056374 | MS.gene93341 | 0.85348 | 2.32E-61 | -1.69E-46 |
| MS.gene056510 | MS.gene93341 | 0.810121 | 1.35E-50 | -1.69E-46 |
| MS.gene056657 | MS.gene93341 | 0.875863 | 2.20E-68 | -1.69E-46 |
| MS.gene056692 | MS.gene93341 | 0.811966 | 5.38E-51 | -1.69E-46 |
| MS.gene057129 | MS.gene93341 | 0.860967 | 1.43E-63 | -1.69E-46 |
| MS.gene057246 | MS.gene93341 | 0.801613 | 8.29E-49 | -1.69E-46 |
| MS.gene057416 | MS.gene93341 | 0.840657 | 7.62E-58 | -1.69E-46 |
| MS.gene058019 | MS.gene93341 | 0.80675 | 7.07E-50 | -1.69E-46 |
| MS.gene058419 | MS.gene93341 | 0.867138 | 1.71E-65 | -1.69E-46 |
| MS.gene058544 | MS.gene93341 | 0.810796 | 9.64E-51 | -1.69E-46 |
| MS.gene058723 | MS.gene93341 | 0.828741 | 7.59E-55 | -1.69E-46 |
| MS.gene058773 | MS.gene93341 | 0.836854 | 7.33E-57 | -1.69E-46 |
| MS.gene059022 | MS.gene93341 | 0.845811 | 3.22E-59 | -1.69E-46 |
| MS.gene059029 | MS.gene93341 | 0.839704 | 1.35E-57 | -1.69E-46 |
| MS.gene059677 | MS.gene93341 | 0.88322 | 5.40E-71 | -1.69E-46 |
| MS.gene059718 | MS.gene93341 | 0.826886 | 2.12E-54 | -1.69E-46 |
| MS.gene059756 | MS.gene93341 | 0.80724 | 5.57E-50 | -1.69E-46 |
| MS.gene059858 | MS.gene93341 | 0.822991 | 1.76E-53 | -1.69E-46 |
| MS.gene059960 | MS.gene93341 | 0.846419 | 2.20E-59 | -1.69E-46 |
| MS.gene060703 | MS.gene93341 | 0.813428 | 2.57E-51 | -1.69E-46 |
| MS.gene060728 | MS.gene93341 | 0.816099 | 6.59E-52 | -1.69E-46 |
| MS.gene060762 | MS.gene93341 | 0.802066 | 6.69E-49 | -1.69E-46 |
| MS.gene06092 | MS.gene93341 | 0.802028 | 6.81E-49 | -1.69E-46 |
| MS.gene061150 | MS.gene93341 | 0.857656 | 1.41E-62 | -1.69E-46 |
| MS.gene061200 | MS.gene93341 | 0.848813 | 4.82E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93341.t1 | MTR_3g037750 | 100.000 | 82 | 0 | 0 | 1 | 82 | 22 | 103 | 2.84e-56 | 169 |
| MS.gene93341.t1 | MTR_7g010580 | 90.000 | 70 | 7 | 0 | 13 | 82 | 40 | 109 | 1.72e-43 | 137 |
| MS.gene93341.t1 | MTR_6g012360 | 88.406 | 69 | 8 | 0 | 14 | 82 | 39 | 107 | 1.43e-41 | 132 |
| MS.gene93341.t1 | MTR_7g090590 | 72.000 | 75 | 21 | 0 | 8 | 82 | 46 | 120 | 3.15e-34 | 114 |
| MS.gene93341.t1 | MTR_3g007900 | 66.667 | 66 | 22 | 0 | 17 | 82 | 89 | 154 | 2.82e-28 | 100 |
| MS.gene93341.t1 | MTR_5g095990 | 66.667 | 66 | 22 | 0 | 17 | 82 | 84 | 149 | 3.77e-28 | 99.4 |
| MS.gene93341.t1 | MTR_5g036860 | 61.765 | 68 | 26 | 0 | 15 | 82 | 25 | 92 | 5.35e-25 | 89.7 |
| MS.gene93341.t1 | MTR_5g036720 | 58.824 | 68 | 28 | 0 | 15 | 82 | 25 | 92 | 2.42e-22 | 83.2 |
| MS.gene93341.t1 | MTR_5g036880 | 57.353 | 68 | 29 | 0 | 15 | 82 | 25 | 92 | 4.00e-22 | 82.4 |
| MS.gene93341.t1 | MTR_5g036640 | 58.333 | 60 | 25 | 0 | 23 | 82 | 24 | 83 | 3.42e-20 | 77.4 |
| MS.gene93341.t1 | MTR_8g085470 | 64.706 | 68 | 24 | 0 | 15 | 82 | 28 | 95 | 2.14e-18 | 73.2 |
| MS.gene93341.t1 | MTR_3g102660 | 49.153 | 59 | 30 | 0 | 24 | 82 | 27 | 85 | 2.70e-13 | 59.7 |
| MS.gene93341.t1 | MTR_1g106915 | 44.444 | 63 | 35 | 0 | 20 | 82 | 28 | 90 | 4.28e-13 | 59.7 |
| MS.gene93341.t1 | MTR_1g096370 | 41.463 | 82 | 46 | 2 | 1 | 82 | 16 | 95 | 1.74e-12 | 58.2 |
| MS.gene93341.t1 | MTR_1g025250 | 41.772 | 79 | 45 | 1 | 5 | 82 | 22 | 100 | 4.35e-12 | 57.4 |
| MS.gene93341.t1 | MTR_1g025220 | 42.169 | 83 | 44 | 2 | 1 | 82 | 22 | 101 | 1.58e-11 | 55.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93341.t1 | AT1G74670 | 76.829 | 82 | 18 | 1 | 1 | 82 | 21 | 101 | 6.22e-41 | 130 |
| MS.gene93341.t1 | AT5G15230 | 66.667 | 84 | 26 | 1 | 1 | 82 | 23 | 106 | 1.24e-35 | 117 |
| MS.gene93341.t1 | AT5G15230 | 69.737 | 76 | 23 | 0 | 7 | 82 | 8 | 83 | 9.76e-35 | 114 |
| MS.gene93341.t1 | AT3G10185 | 66.667 | 78 | 23 | 1 | 5 | 82 | 48 | 122 | 3.29e-23 | 86.3 |
| MS.gene93341.t1 | AT2G30810 | 64.286 | 70 | 25 | 0 | 13 | 82 | 37 | 106 | 1.31e-20 | 79.0 |
| MS.gene93341.t1 | AT3G02885 | 67.647 | 68 | 22 | 0 | 15 | 82 | 30 | 97 | 2.42e-20 | 78.2 |
| MS.gene93341.t1 | AT1G10588 | 45.205 | 73 | 39 | 1 | 11 | 82 | 18 | 90 | 1.79e-14 | 63.2 |
| MS.gene93341.t1 | AT2G39540 | 38.889 | 72 | 44 | 0 | 11 | 82 | 16 | 87 | 8.32e-14 | 61.2 |
| MS.gene93341.t1 | AT1G10588 | 48.333 | 60 | 30 | 1 | 24 | 82 | 30 | 89 | 4.05e-13 | 59.7 |
| MS.gene93341.t1 | AT1G22690 | 47.541 | 61 | 32 | 0 | 22 | 82 | 59 | 119 | 2.73e-11 | 55.8 |
| MS.gene93341.t1 | AT1G22690 | 47.541 | 61 | 32 | 0 | 22 | 82 | 59 | 119 | 2.73e-11 | 55.8 |
| MS.gene93341.t1 | AT1G22690 | 47.541 | 61 | 32 | 0 | 22 | 82 | 59 | 119 | 2.73e-11 | 55.8 |
| MS.gene93341.t1 | AT4G09600 | 36.585 | 82 | 46 | 1 | 1 | 82 | 24 | 99 | 6.68e-11 | 54.3 |
| MS.gene93341.t1 | AT5G59845 | 39.726 | 73 | 43 | 1 | 11 | 82 | 17 | 89 | 7.85e-11 | 53.9 |
Find 21 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTATTTACAGGGGAATTA+TGG | 0.224887 | 3.2:-27000773 | MS.gene93341:intron |
| TTTCAATTTCAAGGGCATTT+TGG | 0.264806 | 3.2:+26999093 | None:intergenic |
| GGTCTTCCAATTGTTGTAAC+AGG | 0.291635 | 3.2:+26999128 | None:intergenic |
| CATGACTTGTTTCAATTTCA+AGG | 0.329598 | 3.2:+26999084 | None:intergenic |
| TGTGTTCCTCCTGGCTATTA+TGG | 0.372312 | 3.2:-26999168 | MS.gene93341:CDS |
| TGTGTCCCTGTTACAACAAT+TGG | 0.425313 | 3.2:-26999134 | MS.gene93341:CDS |
| GCAAAAGATGCTGCTCAGTA+TGG | 0.425821 | 3.2:-27000919 | MS.gene93341:CDS |
| CATCTTCTTGTGCATTGAGA+TGG | 0.446525 | 3.2:+26999255 | None:intergenic |
| ATCTTCTTGTGCATTGAGAT+GGG | 0.464024 | 3.2:+26999256 | None:intergenic |
| AAATGTCTCTGTGTTCCTCC+TGG | 0.478257 | 3.2:-26999177 | MS.gene93341:CDS |
| AGGAGGAACACAGAGACATT+TGG | 0.480481 | 3.2:+26999179 | None:intergenic |
| ATGACTTGTTTCAATTTCAA+GGG | 0.510609 | 3.2:+26999085 | None:intergenic |
| GATTTGTTACCATAATAGCC+AGG | 0.572427 | 3.2:+26999159 | None:intergenic |
| CGGTAGCTTTGAAGACTCCC+AGG | 0.578508 | 3.2:+27000749 | None:intergenic |
| GTCTTCCAATTGTTGTAACA+GGG | 0.578624 | 3.2:+26999129 | None:intergenic |
| TACAGGGGAATTATGGACCT+GGG | 0.587624 | 3.2:-27000766 | MS.gene93341:intron |
| TCTCAATGCACAAGAAGATG+TGG | 0.608334 | 3.2:-26999252 | MS.gene93341:CDS |
| TTACAGGGGAATTATGGACC+TGG | 0.609160 | 3.2:-27000767 | MS.gene93341:intron |
| AACAATTGGAAGACCAAGCG+TGG | 0.618322 | 3.2:-26999120 | MS.gene93341:CDS |
| AATTGGAAGACCAAGCGTGG+AGG | 0.716723 | 3.2:-26999117 | MS.gene93341:CDS |
| TTGTTACCATAATAGCCAGG+AGG | 0.723243 | 3.2:+26999162 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTATAATTAAATACAG+AGG | - | chr3.2:26999619-26999638 | MS.gene93341:intron | 10.0% |
| !! | TAAAAACTTAGTAAAAAAAA+GGG | - | chr3.2:26999966-26999985 | MS.gene93341:intron | 10.0% |
| !!! | TTAATTTTGTACATAAAATA+TGG | - | chr3.2:26999316-26999335 | MS.gene93341:intron | 10.0% |
| !! | AAAAAAAGTCTATGTTAAAA+TGG | + | chr3.2:26999726-26999745 | None:intergenic | 15.0% |
| !! | AAAAACTTAGTAAAAAAAAG+GGG | - | chr3.2:26999967-26999986 | MS.gene93341:intron | 15.0% |
| !! | GTAAAAACTTAGTAAAAAAA+AGG | - | chr3.2:26999965-26999984 | MS.gene93341:intron | 15.0% |
| !! | TTAAATAAAGAATATTTCGT+GGG | - | chr3.2:27000636-27000655 | MS.gene93341:intron | 15.0% |
| !! | TTTAAATAAAGAATATTTCG+TGG | - | chr3.2:27000635-27000654 | MS.gene93341:intron | 15.0% |
| !!! | AAAAAGTTGGTATATTTATA+GGG | - | chr3.2:27000431-27000450 | MS.gene93341:intron | 15.0% |
| !!! | AATTTTTTCGATTTATTTAC+AGG | - | chr3.2:26999218-26999237 | MS.gene93341:CDS | 15.0% |
| !!! | AGTATCATTAGTTAATTTTT+AGG | + | chr3.2:26999854-26999873 | None:intergenic | 15.0% |
| !!! | ATATATCCATTTTAAATTAC+TGG | + | chr3.2:27000485-27000504 | None:intergenic | 15.0% |
| !!! | ATGAATTTTTATATTTTTGG+TGG | + | chr3.2:27000215-27000234 | None:intergenic | 15.0% |
| !!! | ATTTTTTCGATTTATTTACA+GGG | - | chr3.2:26999219-26999238 | MS.gene93341:CDS | 15.0% |
| !!! | TAGTGATTGAAAATTTTATA+GGG | + | chr3.2:27000070-27000089 | None:intergenic | 15.0% |
| !!! | TTTTATGTACAAAATTAAGT+TGG | + | chr3.2:26999314-26999333 | None:intergenic | 15.0% |
| !!! | TTTTTTACTAAGTTTTTACT+AGG | + | chr3.2:26999964-26999983 | None:intergenic | 15.0% |
| !! | AAATCACCAGTAATTTAAAA+TGG | - | chr3.2:27000476-27000495 | MS.gene93341:intron | 20.0% |
| !! | CACATAAACAAATATATAAG+TGG | + | chr3.2:26999895-26999914 | None:intergenic | 20.0% |
| !! | CACTTATATATTTGTTTATG+TGG | - | chr3.2:26999893-26999912 | MS.gene93341:intron | 20.0% |
| !! | TTCAGAAACATATAATAAGT+GGG | + | chr3.2:26999521-26999540 | None:intergenic | 20.0% |
| !! | TTTCAGAAACATATAATAAG+TGG | + | chr3.2:26999522-26999541 | None:intergenic | 20.0% |
| !!! | ATATGAGTTTACTTTAAAAG+AGG | - | chr3.2:27000339-27000358 | MS.gene93341:intron | 20.0% |
| !!! | ATCATTAGTTAATTTTTAGG+CGG | + | chr3.2:26999851-26999870 | None:intergenic | 20.0% |
| !!! | CAAAAAGTTGGTATATTTAT+AGG | - | chr3.2:27000430-27000449 | MS.gene93341:intron | 20.0% |
| !!! | CATGCTTTTTTTTTCTTTTA+TGG | - | chr3.2:26999409-26999428 | MS.gene93341:intron | 20.0% |
| !!! | GAAAAGTTGGTATATTTATT+GGG | + | chr3.2:27000010-27000029 | None:intergenic | 20.0% |
| !!! | GTAGTGATTGAAAATTTTAT+AGG | + | chr3.2:27000071-27000090 | None:intergenic | 20.0% |
| !!! | TAAATTACTGGTGATTTTTA+GGG | + | chr3.2:27000473-27000492 | None:intergenic | 20.0% |
| !!! | TATGAGTTTACTTTAAAAGA+GGG | - | chr3.2:27000340-27000359 | MS.gene93341:intron | 20.0% |
| !!! | TATGTGGCAATTTTATTTTT+TGG | - | chr3.2:26999909-26999928 | MS.gene93341:intron | 20.0% |
| !!! | TTAAATTACTGGTGATTTTT+AGG | + | chr3.2:27000474-27000493 | None:intergenic | 20.0% |
| !!! | TTTTAGGGTTAATATGTTTT+TGG | + | chr3.2:27000458-27000477 | None:intergenic | 20.0% |
| !!! | TTTTTTCGATTTATTTACAG+GGG | - | chr3.2:26999220-26999239 | MS.gene93341:CDS | 20.0% |
| ! | AAATGAATGAATGTTAGAGA+CGG | + | chr3.2:26999661-26999680 | None:intergenic | 25.0% |
| ! | ATTTATTTACAGGGGAATTA+TGG | - | chr3.2:26999228-26999247 | MS.gene93341:CDS | 25.0% |
| ! | CATGAGGAAATTTCTTTAAA+TGG | + | chr3.2:26999590-26999609 | None:intergenic | 25.0% |
| ! | TAAAGAAATTTCCTCATGTA+TGG | - | chr3.2:26999592-26999611 | MS.gene93341:intron | 25.0% |
| ! | TCAGAAACATATAATAAGTG+GGG | + | chr3.2:26999520-26999539 | None:intergenic | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+AGG | + | chr3.2:27000418-27000399 | None:intergenic | 25.0% |
| !! | AGTTGAAGGAAAATTTTAGA+GGG | + | chr3.2:27000419-27000400 | None:intergenic | 25.0% |
| !! | TAATTTTTGTACCATACATG+AGG | + | chr3.2:26999606-26999625 | None:intergenic | 25.0% |
| !! | TTTTGCAAAATGCCTATTAA+AGG | + | chr3.2:26999162-26999181 | None:intergenic | 25.0% |
| !!! | ATGACTTGTTTCAATTTCAA+GGG | + | chr3.2:27000919-27000938 | None:intergenic | 25.0% |
| !!! | ATTAAGTTGGTCTACAAAAA+TGG | + | chr3.2:26999301-26999320 | None:intergenic | 25.0% |
| !!! | CGAAAAGTTGGTATATTTAT+TGG | + | chr3.2:27000011-27000030 | None:intergenic | 25.0% |
| !!! | TGAAGATGGTTAGTTTTAAT+GGG | - | chr3.2:27000371-27000390 | MS.gene93341:intron | 25.0% |
| AAATATTAAGCAATGCTCTG+AGG | - | chr3.2:26999774-26999793 | MS.gene93341:intron | 30.0% | |
| AAATGCCTATTAAAGGAACT+AGG | + | chr3.2:26999155-26999174 | None:intergenic | 30.0% | |
| AATATTAAGCAATGCTCTGA+GGG | - | chr3.2:26999775-26999794 | MS.gene93341:intron | 30.0% | |
| AATTCTCAAAACAGAGAGAA+AGG | + | chr3.2:26999120-26999139 | None:intergenic | 30.0% | |
| GAGAGACTAAAACAAAAAGT+TGG | - | chr3.2:27000418-27000437 | MS.gene93341:intron | 30.0% | |
| GAGCATTCAAACAGAAATAT+AGG | + | chr3.2:27000516-27000535 | None:intergenic | 30.0% | |
| TCTTTCCTAGTTCCTTTAAT+AGG | - | chr3.2:26999147-26999166 | MS.gene93341:CDS | 30.0% | |
| TTAATGGGACTAAAAGTTGA+AGG | - | chr3.2:27000386-27000405 | MS.gene93341:intron | 30.0% | |
| TTATAGGGACTAAAAGTTGA+AGG | + | chr3.2:27000055-27000074 | None:intergenic | 30.0% | |
| ! | AAACTAACCATCTTCACTTT+TGG | + | chr3.2:27000367-27000386 | None:intergenic | 30.0% |
| ! | ATGGATATATGATTGACTCA+CGG | + | chr3.2:26999275-26999294 | None:intergenic | 30.0% |
| !! | CATGACTTGTTTCAATTTCA+AGG | + | chr3.2:27000920-27000939 | None:intergenic | 30.0% |
| !!! | GTGAAGATGGTTAGTTTTAA+TGG | - | chr3.2:27000370-27000389 | MS.gene93341:intron | 30.0% |
| !!! | GTGGCAATTTTATTTTTTGG+TGG | - | chr3.2:26999912-26999931 | MS.gene93341:intron | 30.0% |
| !!! | TTTCAATTTCAAGGGCATTT+TGG | + | chr3.2:27000911-27000930 | None:intergenic | 30.0% |
| ACTAGGTACTTTGACGAATA+TGG | + | chr3.2:26999947-26999966 | None:intergenic | 35.0% | |
| ATCTTCTTGTGCATTGAGAT+GGG | + | chr3.2:27000748-27000767 | None:intergenic | 35.0% | |
| CTAGGTACTTTGACGAATAT+GGG | + | chr3.2:26999946-26999965 | None:intergenic | 35.0% | |
| GTCTTCCAATTGTTGTAACA+GGG | + | chr3.2:27000875-27000894 | None:intergenic | 35.0% | |
| GTTAACACAATGCAGTCTAA+TGG | - | chr3.2:27000689-27000708 | MS.gene93341:intron | 35.0% | |
| TAAAGGAACTAGGAAAGAAG+TGG | + | chr3.2:26999145-26999164 | None:intergenic | 35.0% | |
| TCTGAGAGAAATTGAATGAG+TGG | - | chr3.2:27000563-27000582 | MS.gene93341:intron | 35.0% | |
| TGAATGAGTGGAATCAAACA+TGG | - | chr3.2:27000575-27000594 | MS.gene93341:intron | 35.0% | |
| TGGTCTACAAAAATGGAGTA+TGG | + | chr3.2:26999294-26999313 | None:intergenic | 35.0% | |
| ! | TTTTGACAGAAGAACATGCA+TGG | + | chr3.2:27000794-27000813 | None:intergenic | 35.0% |
| !! | GATTTGTTACCATAATAGCC+AGG | + | chr3.2:27000845-27000864 | None:intergenic | 35.0% |
| CATCTTCTTGTGCATTGAGA+TGG | + | chr3.2:27000749-27000768 | None:intergenic | 40.0% | |
| GGTCTTCCAATTGTTGTAAC+AGG | + | chr3.2:27000876-27000895 | None:intergenic | 40.0% | |
| TCTCAATGCACAAGAAGATG+TGG | - | chr3.2:27000749-27000768 | MS.gene93341:intron | 40.0% | |
| TGTGTCCCTGTTACAACAAT+TGG | - | chr3.2:27000867-27000886 | MS.gene93341:intron | 40.0% | |
| TTGTTACCATAATAGCCAGG+AGG | + | chr3.2:27000842-27000861 | None:intergenic | 40.0% | |
| ! | AGGCGGCTAATTTTCATTGA+TGG | + | chr3.2:26999834-26999853 | None:intergenic | 40.0% |
| AAATGTCTCTGTGTTCCTCC+TGG | - | chr3.2:27000824-27000843 | MS.gene93341:intron | 45.0% | |
| AACAATTGGAAGACCAAGCG+TGG | - | chr3.2:27000881-27000900 | MS.gene93341:intron | 45.0% | |
| AGAGGGACCAAAAGTGAAGA+TGG | - | chr3.2:27000357-27000376 | MS.gene93341:intron | 45.0% | |
| AGGAGGAACACAGAGACATT+TGG | + | chr3.2:27000825-27000844 | None:intergenic | 45.0% | |
| GAGGGACGAAAACGAAAAGT+TGG | + | chr3.2:27000023-27000042 | None:intergenic | 45.0% | |
| GCAAAAGATGCTGCTCAGTA+TGG | - | chr3.2:26999082-26999101 | MS.gene93341:CDS | 45.0% | |
| TACAGGGGAATTATGGACCT+GGG | - | chr3.2:26999235-26999254 | MS.gene93341:CDS | 45.0% | |
| TGTGTTCCTCCTGGCTATTA+TGG | - | chr3.2:27000833-27000852 | MS.gene93341:intron | 45.0% | |
| TTACAGGGGAATTATGGACC+TGG | - | chr3.2:26999234-26999253 | MS.gene93341:CDS | 45.0% | |
| !!! | AAAAAATTCTAATTTTTTTT+GGG | + | chr3.2:27000273-27000254 | None:intergenic | 5.0% |
| !!! | AAAAAATTCTAATTTTTTTT+TGG | - | chr3.2:27000254-27000273 | MS.gene93341:intron | 5.0% |
| !!! | AAAAATTCTAATTTTTTTTT+GGG | - | chr3.2:27000255-27000274 | MS.gene93341:intron | 5.0% |
| !!! | AATATGAATTTTTATATTTT+TGG | + | chr3.2:27000218-27000237 | None:intergenic | 5.0% |
| !!! | TAAAAAATTCTAATTTTTTT+TGG | + | chr3.2:27000272-27000253 | None:intergenic | 5.0% |
| AATTGGAAGACCAAGCGTGG+AGG | - | chr3.2:27000884-27000903 | MS.gene93341:intron | 50.0% | |
| !! | CGGTAGCTTTGAAGACTCCC+AGG | + | chr3.2:26999255-26999274 | None:intergenic | 55.0% |
| !! | GCATTTTGGTCCTCCACGCT+TGG | + | chr3.2:27000897-27000916 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 26999076 | 27000947 | 26999076 | ID=MS.gene93341 |
| chr3.2 | mRNA | 26999076 | 27000947 | 26999076 | ID=MS.gene93341.t1;Parent=MS.gene93341 |
| chr3.2 | exon | 27000915 | 27000947 | 27000915 | ID=MS.gene93341.t1.exon1;Parent=MS.gene93341.t1 |
| chr3.2 | CDS | 27000915 | 27000947 | 27000915 | ID=cds.MS.gene93341.t1;Parent=MS.gene93341.t1 |
| chr3.2 | exon | 27000750 | 27000783 | 27000750 | ID=MS.gene93341.t1.exon2;Parent=MS.gene93341.t1 |
| chr3.2 | CDS | 27000750 | 27000783 | 27000750 | ID=cds.MS.gene93341.t1;Parent=MS.gene93341.t1 |
| chr3.2 | exon | 26999076 | 26999282 | 26999076 | ID=MS.gene93341.t1.exon3;Parent=MS.gene93341.t1 |
| chr3.2 | CDS | 26999076 | 26999282 | 26999076 | ID=cds.MS.gene93341.t1;Parent=MS.gene93341.t1 |
| Gene Sequence |
| Protein sequence |
