Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94848.t1 | XP_003619416.1 | 98.3 | 464 | 8 | 0 | 5 | 468 | 61 | 524 | 2.30E-229 | 804.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94848.t1 | Q0WMN5 | 50.4 | 448 | 203 | 5 | 18 | 461 | 67 | 499 | 2.2e-87 | 324.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94848.t1 | G7KLG5 | 98.3 | 464 | 8 | 0 | 5 | 468 | 61 | 524 | 1.7e-229 | 804.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene94848 | 0.803488 | 3.40E-49 | -1.69E-46 |
| MS.gene049217 | MS.gene94848 | 0.839691 | 1.36E-57 | -1.69E-46 |
| MS.gene049222 | MS.gene94848 | 0.842422 | 2.61E-58 | -1.69E-46 |
| MS.gene049285 | MS.gene94848 | 0.86288 | 3.70E-64 | -1.69E-46 |
| MS.gene049320 | MS.gene94848 | 0.85965 | 3.57E-63 | -1.69E-46 |
| MS.gene049627 | MS.gene94848 | 0.839921 | 1.19E-57 | -1.69E-46 |
| MS.gene05010 | MS.gene94848 | 0.824704 | 6.99E-54 | -1.69E-46 |
| MS.gene050163 | MS.gene94848 | 0.879387 | 1.30E-69 | -1.69E-46 |
| MS.gene050165 | MS.gene94848 | 0.896427 | 3.73E-76 | -1.69E-46 |
| MS.gene050333 | MS.gene94848 | 0.882508 | 9.83E-71 | -1.69E-46 |
| MS.gene050504 | MS.gene94848 | 0.859947 | 2.91E-63 | -1.69E-46 |
| MS.gene050518 | MS.gene94848 | 0.880509 | 5.18E-70 | -1.69E-46 |
| MS.gene050577 | MS.gene94848 | 0.82033 | 7.26E-53 | -1.69E-46 |
| MS.gene050612 | MS.gene94848 | 0.881752 | 1.85E-70 | -1.69E-46 |
| MS.gene050675 | MS.gene94848 | 0.81691 | 4.34E-52 | -1.69E-46 |
| MS.gene050699 | MS.gene94848 | 0.825226 | 5.26E-54 | -1.69E-46 |
| MS.gene050772 | MS.gene94848 | 0.82598 | 3.49E-54 | -1.69E-46 |
| MS.gene050876 | MS.gene94848 | 0.880784 | 4.13E-70 | -1.69E-46 |
| MS.gene05087 | MS.gene94848 | 0.868236 | 7.59E-66 | -1.69E-46 |
| MS.gene050904 | MS.gene94848 | 0.838613 | 2.59E-57 | -1.69E-46 |
| MS.gene050986 | MS.gene94848 | 0.838886 | 2.20E-57 | -1.69E-46 |
| MS.gene05100 | MS.gene94848 | 0.833452 | 5.29E-56 | -1.69E-46 |
| MS.gene051317 | MS.gene94848 | 0.819224 | 1.30E-52 | -1.69E-46 |
| MS.gene051810 | MS.gene94848 | 0.844002 | 9.90E-59 | -1.69E-46 |
| MS.gene051858 | MS.gene94848 | 0.805618 | 1.22E-49 | -1.69E-46 |
| MS.gene051949 | MS.gene94848 | 0.825535 | 4.45E-54 | -1.69E-46 |
| MS.gene052271 | MS.gene94848 | 0.803885 | 2.82E-49 | -1.69E-46 |
| MS.gene052482 | MS.gene94848 | 0.805012 | 1.64E-49 | -1.69E-46 |
| MS.gene052486 | MS.gene94848 | 0.824517 | 7.73E-54 | -1.69E-46 |
| MS.gene052916 | MS.gene94848 | 0.828942 | 6.79E-55 | -1.69E-46 |
| MS.gene053213 | MS.gene94848 | 0.831561 | 1.56E-55 | -1.69E-46 |
| MS.gene053286 | MS.gene94848 | 0.837064 | 6.48E-57 | -1.69E-46 |
| MS.gene053632 | MS.gene94848 | 0.801273 | 9.73E-49 | -1.69E-46 |
| MS.gene054374 | MS.gene94848 | 0.817141 | 3.85E-52 | -1.69E-46 |
| MS.gene054600 | MS.gene94848 | 0.822185 | 2.71E-53 | -1.69E-46 |
| MS.gene054616 | MS.gene94848 | -0.80423 | 2.39E-49 | -1.69E-46 |
| MS.gene054638 | MS.gene94848 | 0.8106 | 1.06E-50 | -1.69E-46 |
| MS.gene054642 | MS.gene94848 | 0.855739 | 5.15E-62 | -1.69E-46 |
| MS.gene054954 | MS.gene94848 | 0.855206 | 7.37E-62 | -1.69E-46 |
| MS.gene055362 | MS.gene94848 | 0.855127 | 7.77E-62 | -1.69E-46 |
| MS.gene055502 | MS.gene94848 | 0.83262 | 8.52E-56 | -1.69E-46 |
| MS.gene055577 | MS.gene94848 | 0.828688 | 7.82E-55 | -1.69E-46 |
| MS.gene055634 | MS.gene94848 | 0.89959 | 1.71E-77 | -1.69E-46 |
| MS.gene055636 | MS.gene94848 | 0.814689 | 1.36E-51 | -1.69E-46 |
| MS.gene055638 | MS.gene94848 | 0.867509 | 1.30E-65 | -1.69E-46 |
| MS.gene055748 | MS.gene94848 | 0.838611 | 2.60E-57 | -1.69E-46 |
| MS.gene055750 | MS.gene94848 | 0.832244 | 1.06E-55 | -1.69E-46 |
| MS.gene055751 | MS.gene94848 | 0.854824 | 9.52E-62 | -1.69E-46 |
| MS.gene055776 | MS.gene94848 | 0.836555 | 8.74E-57 | -1.69E-46 |
| MS.gene055849 | MS.gene94848 | 0.827147 | 1.84E-54 | -1.69E-46 |
| MS.gene056374 | MS.gene94848 | 0.821297 | 4.35E-53 | -1.69E-46 |
| MS.gene056450 | MS.gene94848 | 0.807153 | 5.81E-50 | -1.69E-46 |
| MS.gene056504 | MS.gene94848 | 0.834347 | 3.16E-56 | -1.69E-46 |
| MS.gene056510 | MS.gene94848 | 0.831786 | 1.37E-55 | -1.69E-46 |
| MS.gene056549 | MS.gene94848 | 0.85945 | 4.10E-63 | -1.69E-46 |
| MS.gene056657 | MS.gene94848 | 0.859141 | 5.08E-63 | -1.69E-46 |
| MS.gene056692 | MS.gene94848 | 0.836611 | 8.46E-57 | -1.69E-46 |
| MS.gene056898 | MS.gene94848 | 0.81233 | 4.48E-51 | -1.69E-46 |
| MS.gene057129 | MS.gene94848 | 0.807417 | 5.11E-50 | -1.69E-46 |
| MS.gene057831 | MS.gene94848 | 0.803075 | 4.14E-49 | -1.69E-46 |
| MS.gene058335 | MS.gene94848 | 0.819193 | 1.32E-52 | -1.69E-46 |
| MS.gene058419 | MS.gene94848 | 0.857926 | 1.17E-62 | -1.69E-46 |
| MS.gene058719 | MS.gene94848 | 0.822825 | 1.93E-53 | -1.69E-46 |
| MS.gene058723 | MS.gene94848 | 0.809787 | 1.59E-50 | -1.69E-46 |
| MS.gene058773 | MS.gene94848 | 0.857034 | 2.15E-62 | -1.69E-46 |
| MS.gene059022 | MS.gene94848 | 0.853502 | 2.29E-61 | -1.69E-46 |
| MS.gene059029 | MS.gene94848 | 0.821007 | 5.08E-53 | -1.69E-46 |
| MS.gene059079 | MS.gene94848 | 0.861325 | 1.11E-63 | -1.69E-46 |
| MS.gene059677 | MS.gene94848 | 0.861569 | 9.35E-64 | -1.69E-46 |
| MS.gene059718 | MS.gene94848 | 0.822891 | 1.86E-53 | -1.69E-46 |
| MS.gene059801 | MS.gene94848 | 0.834808 | 2.42E-56 | -1.69E-46 |
| MS.gene059865 | MS.gene94848 | 0.828584 | 8.29E-55 | -1.69E-46 |
| MS.gene060193 | MS.gene94848 | 0.816386 | 5.68E-52 | -1.69E-46 |
| MS.gene060703 | MS.gene94848 | 0.843782 | 1.13E-58 | -1.69E-46 |
| MS.gene060762 | MS.gene94848 | 0.85582 | 4.88E-62 | -1.69E-46 |
| MS.gene06077 | MS.gene94848 | 0.841774 | 3.87E-58 | -1.69E-46 |
| MS.gene060982 | MS.gene94848 | 0.842432 | 2.60E-58 | -1.69E-46 |
| MS.gene06105 | MS.gene94848 | 0.804425 | 2.17E-49 | -1.69E-46 |
| MS.gene061134 | MS.gene94848 | 0.818063 | 2.38E-52 | -1.69E-46 |
| MS.gene061150 | MS.gene94848 | 0.836006 | 1.20E-56 | -1.69E-46 |
| MS.gene061171 | MS.gene94848 | 0.854142 | 1.50E-61 | -1.69E-46 |
| MS.gene061200 | MS.gene94848 | 0.820598 | 6.30E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94848.t1 | MTR_6g052360 | 98.276 | 464 | 8 | 0 | 5 | 468 | 61 | 524 | 0.0 | 939 |
| MS.gene94848.t1 | MTR_6g052360 | 97.990 | 398 | 8 | 0 | 5 | 402 | 61 | 458 | 0.0 | 796 |
| MS.gene94848.t1 | MTR_6g052360 | 98.154 | 325 | 6 | 0 | 144 | 468 | 1 | 325 | 0.0 | 657 |
| MS.gene94848.t1 | MTR_5g090150 | 28.160 | 451 | 241 | 13 | 24 | 466 | 65 | 440 | 2.79e-38 | 145 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94848.t1 | AT5G24060 | 46.623 | 459 | 217 | 8 | 15 | 467 | 27 | 463 | 4.63e-135 | 397 |
| MS.gene94848.t1 | AT5G24060 | 46.930 | 456 | 214 | 8 | 18 | 467 | 60 | 493 | 1.55e-134 | 397 |
| MS.gene94848.t1 | AT5G24060 | 47.020 | 453 | 212 | 8 | 21 | 467 | 50 | 480 | 2.48e-134 | 396 |
| MS.gene94848.t1 | AT3G49140 | 44.060 | 463 | 216 | 7 | 15 | 461 | 64 | 499 | 1.20e-117 | 354 |
| MS.gene94848.t1 | AT3G59300 | 32.212 | 416 | 216 | 11 | 47 | 459 | 102 | 454 | 1.10e-51 | 181 |
| MS.gene94848.t1 | AT3G59300 | 32.212 | 416 | 216 | 11 | 47 | 459 | 96 | 448 | 1.24e-51 | 181 |
| MS.gene94848.t1 | AT3G59300 | 30.266 | 413 | 195 | 12 | 47 | 459 | 96 | 415 | 1.85e-44 | 161 |
Find 82 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGTTGCTTTACTAATTT+CGG | 0.248090 | 6.1:+29187010 | None:intergenic |
| TGTTGCTTCGGGTGATTTCT+TGG | 0.274022 | 6.1:+29185302 | None:intergenic |
| TTTCAAATGAGATATAATTT+TGG | 0.282845 | 6.1:+29186272 | None:intergenic |
| GACAGTGTTGGTGCGATTAA+TGG | 0.283842 | 6.1:-29186978 | MS.gene94848:CDS |
| CAAGTTCAAACACTGAGATT+TGG | 0.285165 | 6.1:-29185749 | MS.gene94848:CDS |
| AACGATCTCCAATCTGTAAA+AGG | 0.290883 | 6.1:+29186866 | None:intergenic |
| CCATGTTCATCTGTCAAATA+TGG | 0.298949 | 6.1:+29188353 | None:intergenic |
| ACTTGCAGACTGGGCAAAAT+TGG | 0.313686 | 6.1:-29187344 | MS.gene94848:CDS |
| CTTCAGATGATCCAATTGAT+TGG | 0.355755 | 6.1:-29187142 | MS.gene94848:CDS |
| TCTTCACAAGTTTGTTTCTC+CGG | 0.373500 | 6.1:+29189444 | None:intergenic |
| GTCCATCAGAAATTGACTTT+GGG | 0.382835 | 6.1:-29187638 | MS.gene94848:CDS |
| TCTGTCAAATATGGCAAATC+TGG | 0.384390 | 6.1:+29188362 | None:intergenic |
| AGTTTGTTTCTCCGGGGAAA+TGG | 0.385331 | 6.1:+29189452 | None:intergenic |
| TGAGATTTGGATTCAAGAAA+AGG | 0.387761 | 6.1:-29185736 | MS.gene94848:CDS |
| TCGTGTAGTCTTCTACTTCA+AGG | 0.390376 | 6.1:+29186328 | None:intergenic |
| TTCGGCAGTACTGGATTGAT+TGG | 0.396859 | 6.1:+29187028 | None:intergenic |
| AATATCATGATAATATTGTT+TGG | 0.402796 | 6.1:-29188385 | MS.gene94848:CDS |
| GCAGATAGATGCTTCTGTAT+TGG | 0.403056 | 6.1:+29187050 | None:intergenic |
| GGTCCATCAGAAATTGACTT+TGG | 0.406974 | 6.1:-29187639 | MS.gene94848:CDS |
| GTCTCTCTGTTGGATATGTA+AGG | 0.409737 | 6.1:-29186211 | MS.gene94848:CDS |
| GGCTGCTCCATCCAATCAAT+TGG | 0.411923 | 6.1:+29187131 | None:intergenic |
| GAGGCAGCTATTTCCTCAAA+TGG | 0.417837 | 6.1:+29189344 | None:intergenic |
| AGAAATTGACTTTGGGATTG+AGG | 0.418025 | 6.1:-29187631 | MS.gene94848:CDS |
| CTCCGGGGAAATGGAGTGCC+CGG | 0.430596 | 6.1:+29189461 | None:intergenic |
| TATTTCCTCAAATGGGTGAT+AGG | 0.435060 | 6.1:+29189352 | None:intergenic |
| ATCTCTGAGATGGACTTATC+AGG | 0.436637 | 6.1:-29187660 | MS.gene94848:CDS |
| CTTCACAAGTTTGTTTCTCC+GGG | 0.437426 | 6.1:+29189445 | None:intergenic |
| CTTATCTGTGTGGATTCACT+TGG | 0.440113 | 6.1:-29185800 | MS.gene94848:CDS |
| TTTACTAATTTCGGCAGTAC+TGG | 0.443338 | 6.1:+29187019 | None:intergenic |
| ATTCACTTGGGTTTGACGTA+AGG | 0.443576 | 6.1:-29185787 | MS.gene94848:CDS |
| ATATCTCATTTGAAAGCTGC+TGG | 0.447699 | 6.1:-29186264 | MS.gene94848:CDS |
| TATCCAACAGAGAGACTTAA+GGG | 0.457529 | 6.1:+29186218 | None:intergenic |
| ATATCCAACAGAGAGACTTA+AGG | 0.458168 | 6.1:+29186217 | None:intergenic |
| TTATTGTTTGCAGGAATGGC+TGG | 0.463297 | 6.1:-29187413 | MS.gene94848:intron |
| TTCACTTGGGTTTGACGTAA+GGG | 0.473806 | 6.1:-29185786 | MS.gene94848:CDS |
| TTTGACGTAAGGGTTTGTTC+AGG | 0.474463 | 6.1:-29185776 | MS.gene94848:CDS |
| ACGCAGGTCTTATAACTCCT+TGG | 0.488357 | 6.1:+29187090 | None:intergenic |
| AAAAGGAAGTCTCGTCTGAA+TGG | 0.494254 | 6.1:+29186883 | None:intergenic |
| TGAAGATAACGCATCACAAA+AGG | 0.499955 | 6.1:-29186931 | MS.gene94848:CDS |
| TCCTCAAATGGGTGATAGGA+TGG | 0.503275 | 6.1:+29189356 | None:intergenic |
| AGATGATCCAATTGATTGGA+TGG | 0.503955 | 6.1:-29187138 | MS.gene94848:CDS |
| ATGATGAAGCACTTGCAGAC+TGG | 0.507045 | 6.1:-29187354 | MS.gene94848:CDS |
| ACAACATCCTAGCTCAGATC+AGG | 0.512194 | 6.1:-29189402 | MS.gene94848:CDS |
| GATGACCTTGCAATAGCATC+AGG | 0.521832 | 6.1:+29186297 | None:intergenic |
| AAGGTGGAAAATAATGAGAA+TGG | 0.522737 | 6.1:-29186912 | MS.gene94848:CDS |
| GAGATTTGGATTCAAGAAAA+GGG | 0.523108 | 6.1:-29185735 | MS.gene94848:intron |
| TGATGAAGCACTTGCAGACT+GGG | 0.525455 | 6.1:-29187353 | MS.gene94848:CDS |
| ATCCCAAAGTCAATTTCTGA+TGG | 0.528071 | 6.1:+29187636 | None:intergenic |
| TGAAAATGAAGACGAGAATG+AGG | 0.528665 | 6.1:-29187550 | MS.gene94848:CDS |
| GGACTGCAAAATATCTTCAC+CGG | 0.530976 | 6.1:+29188214 | None:intergenic |
| CCTTGGAAAACTACACAAGC+TGG | 0.534374 | 6.1:+29187107 | None:intergenic |
| AGGCAGCTATTTCCTCAAAT+GGG | 0.535456 | 6.1:+29189345 | None:intergenic |
| AACAAGTAGAACTGTTATTG+AGG | 0.539337 | 6.1:-29189279 | MS.gene94848:intron |
| TTATCTGTGTGGATTCACTT+GGG | 0.545343 | 6.1:-29185799 | MS.gene94848:CDS |
| ACCCGGGCACTCCATTTCCC+CGG | 0.556563 | 6.1:-29189463 | MS.gene94848:CDS |
| ACAGGCTCCTGATCTGAGCT+AGG | 0.557261 | 6.1:+29189395 | None:intergenic |
| GCCATCCTATCACCCATTTG+AGG | 0.558341 | 6.1:-29189357 | MS.gene94848:CDS |
| CATAATTGGTGTGGATACCA+TGG | 0.560333 | 6.1:-29187688 | MS.gene94848:CDS |
| GATATGTAAGGGTATTCAAG+TGG | 0.564535 | 6.1:-29186199 | MS.gene94848:CDS |
| ATCATACTTGCAGGCTACGT+CGG | 0.568148 | 6.1:-29185363 | MS.gene94848:intron |
| CATCTCAGAGATCATTTCCA+TGG | 0.568661 | 6.1:+29187671 | None:intergenic |
| CATGGAAATGATCTCTGAGA+TGG | 0.575487 | 6.1:-29187670 | MS.gene94848:CDS |
| GAAAATAAAGAAGACAGTGT+TGG | 0.576047 | 6.1:-29186990 | MS.gene94848:CDS |
| GGTTAACAGCAAAGCAACAA+TGG | 0.576380 | 6.1:-29188432 | MS.gene94848:CDS |
| CCATATTTGACAGATGAACA+TGG | 0.584747 | 6.1:-29188353 | MS.gene94848:CDS |
| CGAGAATGAGGATTATGACT+CGG | 0.584861 | 6.1:-29187538 | MS.gene94848:intron |
| GGAAATAGCTGCCTCCACAT+TGG | 0.585698 | 6.1:-29189336 | MS.gene94848:CDS |
| TCTCTCTGTTGGATATGTAA+GGG | 0.588182 | 6.1:-29186210 | MS.gene94848:CDS |
| TATATCATTGAGTTGTCTCT+CGG | 0.590503 | 6.1:+29185331 | None:intergenic |
| AAGCCCTTAAGTCTCTCTGT+TGG | 0.591338 | 6.1:-29186221 | MS.gene94848:CDS |
| GTAGCAAGTCATAATTGGTG+TGG | 0.591867 | 6.1:-29187697 | MS.gene94848:intron |
| AGATAACGCATCACAAAAGG+TGG | 0.594687 | 6.1:-29186928 | MS.gene94848:CDS |
| TCCGGGGAAATGGAGTGCCC+GGG | 0.598374 | 6.1:+29189462 | None:intergenic |
| GACTGCAAAATATCTTCACC+GGG | 0.607488 | 6.1:+29188215 | None:intergenic |
| CTCAACCTGATGCTATTGCA+AGG | 0.627135 | 6.1:-29186302 | MS.gene94848:CDS |
| ATGTAAGGGTATTCAAGTGG+AGG | 0.627729 | 6.1:-29186196 | MS.gene94848:intron |
| CTCACTAATCTCCAATGTGG+AGG | 0.643018 | 6.1:+29189325 | None:intergenic |
| ATCCTCACTAATCTCCAATG+TGG | 0.656177 | 6.1:+29189322 | None:intergenic |
| CTCCACATTGGAGATTAGTG+AGG | 0.667251 | 6.1:-29189324 | MS.gene94848:CDS |
| TTCACAAGTTTGTTTCTCCG+GGG | 0.684542 | 6.1:+29189446 | None:intergenic |
| GGAGGCACAACTTATCTGTG+TGG | 0.685326 | 6.1:-29185810 | MS.gene94848:CDS |
| TGGAAAACTACACAAGCTGG+AGG | 0.707383 | 6.1:+29187110 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAATGTATAAATTTTGTT+TGG | - | chr6.1:29186162-29186181 | MS.gene94848:intron | 10.0% |
| !!! | ATGGATATTTTTAATTTAAA+AGG | - | chr6.1:29188218-29188237 | MS.gene94848:CDS | 10.0% |
| !!! | TGGATATTTTTAATTTAAAA+GGG | - | chr6.1:29188219-29188238 | MS.gene94848:CDS | 10.0% |
| !! | AATATCATGATAATATTGTT+TGG | - | chr6.1:29186483-29186502 | MS.gene94848:intron | 15.0% |
| !! | ATAATTTGATATAATTATGC+AGG | - | chr6.1:29185366-29185385 | MS.gene94848:intron | 15.0% |
| !! | ATCTAAATTCAGATATATAA+AGG | + | chr6.1:29189424-29189443 | None:intergenic | 15.0% |
| !! | TACTTGTAGAATTTAATTAA+CGG | + | chr6.1:29186607-29186626 | None:intergenic | 15.0% |
| !! | TATAATAGTTTAATAACACA+TGG | + | chr6.1:29186018-29186037 | None:intergenic | 15.0% |
| !! | TTGTTCATATTTATTGATAT+TGG | - | chr6.1:29188136-29188155 | MS.gene94848:intron | 15.0% |
| !!! | AAAATTATTTTCTGAAGTTA+GGG | + | chr6.1:29186678-29186697 | None:intergenic | 15.0% |
| !!! | TTAAAAATGTTAATACCTTT+TGG | + | chr6.1:29185892-29185911 | None:intergenic | 15.0% |
| !!! | TTGTTTTTAATGTAATTATG+AGG | - | chr6.1:29187366-29187385 | MS.gene94848:CDS | 15.0% |
| !!! | TTTCAAATGAGATATAATTT+TGG | + | chr6.1:29188599-29188618 | None:intergenic | 15.0% |
| !! | AAATTTGTAGTTAAAGAAGA+GGG | - | chr6.1:29189318-29189337 | MS.gene94848:CDS | 20.0% |
| !! | AACAATAATATGAATAACAG+TGG | + | chr6.1:29187443-29187462 | None:intergenic | 20.0% |
| !! | AATAAAATTTGGCAAACATT+TGG | - | chr6.1:29185636-29185655 | MS.gene94848:intron | 20.0% |
| !! | ACTTGTAGAATTTAATTAAC+GGG | + | chr6.1:29186606-29186625 | None:intergenic | 20.0% |
| !! | AGAAAAATAGGAGATTAAAT+TGG | - | chr6.1:29185966-29185985 | MS.gene94848:intron | 20.0% |
| !! | AGAATTATGATTAGAACAAA+AGG | + | chr6.1:29187080-29187099 | None:intergenic | 20.0% |
| !! | GTAGATAATTACAGAAAAAT+AGG | - | chr6.1:29185954-29185973 | MS.gene94848:intron | 20.0% |
| !! | TAAATTCAGATATATAAAGG+CGG | + | chr6.1:29189421-29189440 | None:intergenic | 20.0% |
| !! | TAAATTTGTAGTTAAAGAAG+AGG | - | chr6.1:29189317-29189336 | MS.gene94848:CDS | 20.0% |
| !! | TATTTATTGTAAGAAATACG+AGG | - | chr6.1:29188390-29188409 | MS.gene94848:CDS | 20.0% |
| !! | TTATTCATATTATTGTTTGC+AGG | - | chr6.1:29187446-29187465 | MS.gene94848:intron | 20.0% |
| !! | TTATTGAATATGTGTAAGTT+AGG | - | chr6.1:29186083-29186102 | MS.gene94848:intron | 20.0% |
| !!! | AACTTCAGAAAATAATTTTG+TGG | - | chr6.1:29186679-29186698 | MS.gene94848:intron | 20.0% |
| !!! | AATGCAATTACTTATACTTT+TGG | + | chr6.1:29188847-29188866 | None:intergenic | 20.0% |
| !!! | AATTTTTTAGCAAAATCCAT+TGG | + | chr6.1:29187570-29187589 | None:intergenic | 20.0% |
| !!! | CAAAATTATTTTCTGAAGTT+AGG | + | chr6.1:29186679-29186698 | None:intergenic | 20.0% |
| !!! | CAGTATTTTCTAAAATGAAA+CGG | + | chr6.1:29185825-29185844 | None:intergenic | 20.0% |
| !!! | GGTATTAACATTTTTAAACA+AGG | - | chr6.1:29185895-29185914 | MS.gene94848:intron | 20.0% |
| ! | AACTGTAAACCTAGAAAAAA+AGG | + | chr6.1:29185928-29185947 | None:intergenic | 25.0% |
| ! | AATAGAGAATATCTGCATTA+TGG | - | chr6.1:29186124-29186143 | MS.gene94848:intron | 25.0% |
| ! | AATGAACATCAAGAAAATGA+AGG | + | chr6.1:29186916-29186935 | None:intergenic | 25.0% |
| ! | AATGCAGATATTCTCTATTA+GGG | + | chr6.1:29186123-29186142 | None:intergenic | 25.0% |
| ! | AATGCCATTAATATAAGAAC+AGG | + | chr6.1:29186869-29186888 | None:intergenic | 25.0% |
| ! | AATTTAGTGACTGCATTAAT+TGG | - | chr6.1:29188172-29188191 | MS.gene94848:intron | 25.0% |
| ! | AATTTGTAGTTAAAGAAGAG+GGG | - | chr6.1:29189319-29189338 | MS.gene94848:CDS | 25.0% |
| ! | ACTGTTTGTAAGTATTTCAT+AGG | + | chr6.1:29186747-29186766 | None:intergenic | 25.0% |
| ! | ACTTAATATATCATACTTGC+AGG | - | chr6.1:29189496-29189515 | MS.gene94848:intron | 25.0% |
| ! | ATGCCATTAATATAAGAACA+GGG | + | chr6.1:29186868-29186887 | None:intergenic | 25.0% |
| ! | ATTATCAACACTTTAACCAT+GGG | + | chr6.1:29188425-29188444 | None:intergenic | 25.0% |
| ! | CACAAGGAGAAAATAAAATT+TGG | - | chr6.1:29185625-29185644 | MS.gene94848:intron | 25.0% |
| ! | CATATTCAATAAGTCAAAAC+AGG | + | chr6.1:29186075-29186094 | None:intergenic | 25.0% |
| ! | CATTCTCAGTTAAGAAATAA+TGG | - | chr6.1:29188199-29188218 | MS.gene94848:CDS | 25.0% |
| ! | CTTGTAGAATTTAATTAACG+GGG | + | chr6.1:29186605-29186624 | None:intergenic | 25.0% |
| ! | GAAATACTATATGTAATGAG+AGG | - | chr6.1:29185337-29185356 | MS.gene94848:CDS | 25.0% |
| ! | GGTATCATATCACAAAATAT+AGG | + | chr6.1:29189195-29189214 | None:intergenic | 25.0% |
| ! | TAATGCAGATATTCTCTATT+AGG | + | chr6.1:29186124-29186143 | None:intergenic | 25.0% |
| ! | TATTATCAACACTTTAACCA+TGG | + | chr6.1:29188426-29188445 | None:intergenic | 25.0% |
| ! | TCAAAACTGTTATAATTAGC+TGG | - | chr6.1:29188343-29188362 | MS.gene94848:intron | 25.0% |
| ! | TCTCTAATTCATAACTCAAT+TGG | - | chr6.1:29188286-29188305 | MS.gene94848:intron | 25.0% |
| ! | TGTTAATGTTACCTAATTTG+TGG | - | chr6.1:29187602-29187621 | MS.gene94848:CDS | 25.0% |
| !! | AAAATGTTAATACCTTTTGG+AGG | + | chr6.1:29185889-29185908 | None:intergenic | 25.0% |
| !! | AATAATTTTGTGGTAAGACT+AGG | - | chr6.1:29186689-29186708 | MS.gene94848:intron | 25.0% |
| !! | ACATAGCTTGTATTTGTATT+AGG | + | chr6.1:29189228-29189247 | None:intergenic | 25.0% |
| !! | ATTTAATATCCTTGCACTTT+TGG | - | chr6.1:29186984-29187003 | MS.gene94848:CDS | 25.0% |
| !! | ATTTATGCCTTTTCTTTGTT+GGG | - | chr6.1:29188483-29188502 | MS.gene94848:intron | 25.0% |
| !! | TATTTATGCCTTTTCTTTGT+TGG | - | chr6.1:29188482-29188501 | MS.gene94848:intron | 25.0% |
| !! | TGCTTGTTTAGAATTCATTT+AGG | - | chr6.1:29185855-29185874 | MS.gene94848:intron | 25.0% |
| !! | TTTAATATCCTTGCACTTTT+GGG | - | chr6.1:29186985-29187004 | MS.gene94848:CDS | 25.0% |
| !! | TTTTGCTAAAAAATTGACTG+AGG | - | chr6.1:29187575-29187594 | MS.gene94848:CDS | 25.0% |
| !! | TTTTTGTAGCAAGTCATAAT+TGG | - | chr6.1:29187166-29187185 | MS.gene94848:intron | 25.0% |
| !!! | AATTATGACTTGCTACAAAA+AGG | + | chr6.1:29187167-29187186 | None:intergenic | 25.0% |
| !!! | TGCACTTTTATTTGGTTTAT+TGG | - | chr6.1:29187658-29187677 | MS.gene94848:CDS | 25.0% |
| !!! | TTCTGTTGCTTTACTAATTT+CGG | + | chr6.1:29187861-29187880 | None:intergenic | 25.0% |
| !!! | TTTTTTCTAGGTTTACAGTT+GGG | - | chr6.1:29185928-29185947 | MS.gene94848:intron | 25.0% |
| !!! | TTTTTTTCTAGGTTTACAGT+TGG | - | chr6.1:29185927-29185946 | MS.gene94848:intron | 25.0% |
| AAACTGTAAGTATGTGAGAA+TGG | + | chr6.1:29186779-29186798 | None:intergenic | 30.0% | |
| AAATGCTAAAACCATAGTCA+GGG | - | chr6.1:29185796-29185815 | MS.gene94848:CDS | 30.0% | |
| AACAAGTAGAACTGTTATTG+AGG | - | chr6.1:29185589-29185608 | MS.gene94848:intron | 30.0% | |
| AAGGTGGAAAATAATGAGAA+TGG | - | chr6.1:29187956-29187975 | MS.gene94848:intron | 30.0% | |
| AAGTTTGCATATCTTAACAG+TGG | - | chr6.1:29187121-29187140 | MS.gene94848:CDS | 30.0% | |
| AATAACAAAATCACACTGCT+TGG | - | chr6.1:29185692-29185711 | MS.gene94848:intron | 30.0% | |
| AATTACATGCTTTGTAGCAT+AGG | + | chr6.1:29185741-29185760 | None:intergenic | 30.0% | |
| AATTCTGCTAAAAGAAACAG+CGG | + | chr6.1:29186214-29186233 | None:intergenic | 30.0% | |
| ACAATAAATAGCCAGCAAAT+AGG | + | chr6.1:29188380-29188399 | None:intergenic | 30.0% | |
| ACACATCAAAATGAATGCTA+AGG | - | chr6.1:29189602-29189621 | MS.gene94848:intron | 30.0% | |
| AGTTTGCATATCTTAACAGT+GGG | - | chr6.1:29187122-29187141 | MS.gene94848:CDS | 30.0% | |
| ATATGAAGATGAAGGATGAA+AGG | + | chr6.1:29186282-29186301 | None:intergenic | 30.0% | |
| CATATTATTGTTTGCAGGAA+TGG | - | chr6.1:29187451-29187470 | MS.gene94848:intron | 30.0% | |
| CCAGATTTATATGAAGATGA+AGG | + | chr6.1:29186290-29186309 | None:intergenic | 30.0% | |
| CCTTCATCTTCATATAAATC+TGG | - | chr6.1:29186287-29186306 | MS.gene94848:CDS | 30.0% | |
| GAAAATAAAGAAGACAGTGT+TGG | - | chr6.1:29187878-29187897 | MS.gene94848:intron | 30.0% | |
| GAGATTTGGATTCAAGAAAA+GGG | - | chr6.1:29189133-29189152 | MS.gene94848:intron | 30.0% | |
| TAAATGCTAAAACCATAGTC+AGG | - | chr6.1:29185795-29185814 | MS.gene94848:CDS | 30.0% | |
| TATTGTTGAAGTCCAAAAGA+TGG | + | chr6.1:29186964-29186983 | None:intergenic | 30.0% | |
| TGACCCTGTTCTTATATTAA+TGG | - | chr6.1:29186862-29186881 | MS.gene94848:CDS | 30.0% | |
| TGAGATTTGGATTCAAGAAA+AGG | - | chr6.1:29189132-29189151 | MS.gene94848:intron | 30.0% | |
| TGCTACAAACATTCTTATTC+CGG | + | chr6.1:29188903-29188922 | None:intergenic | 30.0% | |
| ! | AAATAAAAGTGCAACAGAAG+AGG | + | chr6.1:29187651-29187670 | None:intergenic | 30.0% |
| ! | AGGTACAAATTTGTTTCACA+AGG | - | chr6.1:29185609-29185628 | MS.gene94848:intron | 30.0% |
| ! | ATGCAAATTTTGTGACTTCT+TGG | - | chr6.1:29185268-29185287 | MS.gene94848:CDS | 30.0% |
| ! | CATGTAATTTTCTTACATGC+AGG | - | chr6.1:29185752-29185771 | MS.gene94848:CDS | 30.0% |
| ! | GAATTTTCTTCAATAAACGC+AGG | + | chr6.1:29187797-29187816 | None:intergenic | 30.0% |
| ! | TAGCTTGTATTTGTATTAGG+AGG | + | chr6.1:29189225-29189244 | None:intergenic | 30.0% |
| ! | TATATCATTGAGTTGTCTCT+CGG | + | chr6.1:29189540-29189559 | None:intergenic | 30.0% |
| ! | TCTTCTGTTGCACTTTTATT+TGG | - | chr6.1:29187650-29187669 | MS.gene94848:CDS | 30.0% |
| ! | TTTAGTTCCCAACAAAGAAA+AGG | + | chr6.1:29188493-29188512 | None:intergenic | 30.0% |
| ! | TTTGTATTAGGAGGCATAAA+TGG | + | chr6.1:29189216-29189235 | None:intergenic | 30.0% |
| ! | TTTTTGTTCTGATTTTGTGC+AGG | - | chr6.1:29188513-29188532 | MS.gene94848:intron | 30.0% |
| !! | AACTGTAATTTGCCATCTTT+TGG | - | chr6.1:29186949-29186968 | MS.gene94848:CDS | 30.0% |
| !! | AGTATTTCTAGACACATGAA+AGG | + | chr6.1:29185325-29185344 | None:intergenic | 30.0% |
| !! | ATAAGAAGTAAAAAGTACCC+GGG | - | chr6.1:29185389-29185408 | MS.gene94848:intron | 30.0% |
| !! | ATATATTTTCAAGCAAAGCC+CGG | - | chr6.1:29186635-29186654 | MS.gene94848:intron | 30.0% |
| !! | GATAAGAAGTAAAAAGTACC+CGG | - | chr6.1:29185388-29185407 | MS.gene94848:intron | 30.0% |
| !! | GATTGTGGCATATCATTTTT+AGG | - | chr6.1:29186415-29186434 | MS.gene94848:intron | 30.0% |
| !!! | GTATTGATTTTCCTGTTCTT+GGG | - | chr6.1:29186571-29186590 | MS.gene94848:intron | 30.0% |
| !!! | TGTATTGATTTTCCTGTTCT+TGG | - | chr6.1:29186570-29186589 | MS.gene94848:intron | 30.0% |
| AAACTCACCATACCTAGATT+CGG | - | chr6.1:29186839-29186858 | MS.gene94848:CDS | 35.0% | |
| AACGATCTCCAATCTGTAAA+AGG | + | chr6.1:29188005-29188024 | None:intergenic | 35.0% | |
| ACTCTAACACATGTACTTTG+AGG | - | chr6.1:29186815-29186834 | MS.gene94848:intron | 35.0% | |
| AGATGATCCAATTGATTGGA+TGG | - | chr6.1:29187730-29187749 | MS.gene94848:intron | 35.0% | |
| AGTACATGTGTTAGAGTAGA+AGG | + | chr6.1:29186812-29186831 | None:intergenic | 35.0% | |
| ATATCCAACAGAGAGACTTA+AGG | + | chr6.1:29188654-29188673 | None:intergenic | 35.0% | |
| ATATCTCATTTGAAAGCTGC+TGG | - | chr6.1:29188604-29188623 | MS.gene94848:intron | 35.0% | |
| ATCCCAAAGTCAATTTCTGA+TGG | + | chr6.1:29187235-29187254 | None:intergenic | 35.0% | |
| ATGAACATGGAAGTAAGTGA+TGG | - | chr6.1:29186528-29186547 | MS.gene94848:intron | 35.0% | |
| ATTCTGCTAAAAGAAACAGC+GGG | + | chr6.1:29186213-29186232 | None:intergenic | 35.0% | |
| CAAGTTCAAACACTGAGATT+TGG | - | chr6.1:29189119-29189138 | MS.gene94848:intron | 35.0% | |
| CAGGAAAATCAATACAGTGT+AGG | + | chr6.1:29186566-29186585 | None:intergenic | 35.0% | |
| CATTTCACTACTATAGATGC+CGG | - | chr6.1:29188881-29188900 | MS.gene94848:intron | 35.0% | |
| CCATATTTGACAGATGAACA+TGG | - | chr6.1:29186515-29186534 | MS.gene94848:intron | 35.0% | |
| CCATGTTCATCTGTCAAATA+TGG | + | chr6.1:29186518-29186537 | None:intergenic | 35.0% | |
| CTATTATAACAAACTGCTCC+AGG | - | chr6.1:29186030-29186049 | MS.gene94848:intron | 35.0% | |
| CTTCAGATGATCCAATTGAT+TGG | - | chr6.1:29187726-29187745 | MS.gene94848:intron | 35.0% | |
| GAGAAACTGTGACTTACTAA+AGG | - | chr6.1:29188937-29188956 | MS.gene94848:intron | 35.0% | |
| TAATCAACGATCCTATTTGC+TGG | - | chr6.1:29188366-29188385 | MS.gene94848:CDS | 35.0% | |
| TACATTTGCCATGTTACAAC+CGG | - | chr6.1:29189007-29189026 | MS.gene94848:intron | 35.0% | |
| TATCCAACAGAGAGACTTAA+GGG | + | chr6.1:29188653-29188672 | None:intergenic | 35.0% | |
| TATTTCCTCAAATGGGTGAT+AGG | + | chr6.1:29185519-29185538 | None:intergenic | 35.0% | |
| TCTAACCTTGTAGATAATGC+TGG | - | chr6.1:29186714-29186733 | MS.gene94848:intron | 35.0% | |
| TCTCTCTGTTGGATATGTAA+GGG | - | chr6.1:29188658-29188677 | MS.gene94848:intron | 35.0% | |
| TCTGTCAAATATGGCAAATC+TGG | + | chr6.1:29186509-29186528 | None:intergenic | 35.0% | |
| TGAAAATGAAGACGAGAATG+AGG | - | chr6.1:29187318-29187337 | MS.gene94848:CDS | 35.0% | |
| TGAAGATAACGCATCACAAA+AGG | - | chr6.1:29187937-29187956 | MS.gene94848:intron | 35.0% | |
| TTATCTGTGTGGATTCACTT+GGG | - | chr6.1:29189069-29189088 | MS.gene94848:intron | 35.0% | |
| TTGCTAATTCCCCAGTTAAA+CGG | - | chr6.1:29188756-29188775 | MS.gene94848:intron | 35.0% | |
| TTTACTAATTTCGGCAGTAC+TGG | + | chr6.1:29187852-29187871 | None:intergenic | 35.0% | |
| ! | ATTCAAGTGTTTTCTGCACA+TGG | - | chr6.1:29188028-29188047 | MS.gene94848:intron | 35.0% |
| ! | ATTTTCATTGCATCAGTCGA+GGG | + | chr6.1:29186317-29186336 | None:intergenic | 35.0% |
| ! | GTCCATCAGAAATTGACTTT+GGG | - | chr6.1:29187230-29187249 | MS.gene94848:intron | 35.0% |
| ! | GTCTTTGATGCACTTTTGAT+GGG | - | chr6.1:29188711-29188730 | MS.gene94848:intron | 35.0% |
| ! | TCTTCACAAGTTTGTTTCTC+CGG | + | chr6.1:29185427-29185446 | None:intergenic | 35.0% |
| ! | TGATCAACTTTAAGAGTTCC+AGG | + | chr6.1:29188110-29188129 | None:intergenic | 35.0% |
| ! | TGTATAGCTGATGATGATTG+TGG | - | chr6.1:29186400-29186419 | MS.gene94848:intron | 35.0% |
| ! | TGTCTTTGATGCACTTTTGA+TGG | - | chr6.1:29188710-29188729 | MS.gene94848:intron | 35.0% |
| !! | AAAGCTGGTTCGAAATAAAG+TGG | - | chr6.1:29189278-29189297 | MS.gene94848:intron | 35.0% |
| !! | AGAAATTGACTTTGGGATTG+AGG | - | chr6.1:29187237-29187256 | MS.gene94848:intron | 35.0% |
| !! | CATATCTTAACAGTGGGTTA+TGG | - | chr6.1:29187128-29187147 | MS.gene94848:CDS | 35.0% |
| !! | GAGAGTGATTTTAGCGTATT+TGG | - | chr6.1:29188783-29188802 | MS.gene94848:intron | 35.0% |
| !! | GATATGTAAGGGTATTCAAG+TGG | - | chr6.1:29188669-29188688 | MS.gene94848:intron | 35.0% |
| !! | GGCTTCTCATTTTTCTTTAC+AGG | + | chr6.1:29185494-29185513 | None:intergenic | 35.0% |
| !! | GTTACCTAATTTGTGGCTTT+TGG | - | chr6.1:29187609-29187628 | MS.gene94848:CDS | 35.0% |
| !!! | GGAAGAACACCTTTTTTTCT+AGG | - | chr6.1:29185916-29185935 | MS.gene94848:intron | 35.0% |
| !!! | TCAGTGCTATTTTTGTACGA+CGG | - | chr6.1:29185669-29185688 | MS.gene94848:intron | 35.0% |
| !!! | TGCTTCGTTTTTTGTTGCTT+CGG | + | chr6.1:29189581-29189600 | None:intergenic | 35.0% |
| AAAAGGAAGTCTCGTCTGAA+TGG | + | chr6.1:29187988-29188007 | None:intergenic | 40.0% | |
| ACACTGCTTGGTTTACATGA+TGG | - | chr6.1:29185704-29185723 | MS.gene94848:intron | 40.0% | |
| ACTCTCAAAGCCGTTTAACT+GGG | + | chr6.1:29188769-29188788 | None:intergenic | 40.0% | |
| ACTCTCCAGCATTATCTACA+AGG | + | chr6.1:29186722-29186741 | None:intergenic | 40.0% | |
| AGATAACGCATCACAAAAGG+TGG | - | chr6.1:29187940-29187959 | MS.gene94848:intron | 40.0% | |
| ATATAAAGGCGGTGTTTGTC+AGG | + | chr6.1:29189410-29189429 | None:intergenic | 40.0% | |
| ATCCTCACTAATCTCCAATG+TGG | + | chr6.1:29185549-29185568 | None:intergenic | 40.0% | |
| ATTCACTTGGGTTTGACGTA+AGG | - | chr6.1:29189081-29189100 | MS.gene94848:intron | 40.0% | |
| CATAATTGGTGTGGATACCA+TGG | - | chr6.1:29187180-29187199 | MS.gene94848:intron | 40.0% | |
| CATCTCAGAGATCATTTCCA+TGG | + | chr6.1:29187200-29187219 | None:intergenic | 40.0% | |
| CGAGAATGAGGATTATGACT+CGG | - | chr6.1:29187330-29187349 | MS.gene94848:CDS | 40.0% | |
| CTTATCTGTGTGGATTCACT+TGG | - | chr6.1:29189068-29189087 | MS.gene94848:intron | 40.0% | |
| GACTGCAAAATATCTTCACC+GGG | + | chr6.1:29186656-29186675 | None:intergenic | 40.0% | |
| GCAGATAGATGCTTCTGTAT+TGG | + | chr6.1:29187821-29187840 | None:intergenic | 40.0% | |
| GGACTGCAAAATATCTTCAC+CGG | + | chr6.1:29186657-29186676 | None:intergenic | 40.0% | |
| GGTTAACAGCAAAGCAACAA+TGG | - | chr6.1:29186436-29186455 | MS.gene94848:intron | 40.0% | |
| GTAGCAAGTCATAATTGGTG+TGG | - | chr6.1:29187171-29187190 | MS.gene94848:intron | 40.0% | |
| GTCTCCAAAAGCCACAAATT+AGG | + | chr6.1:29187616-29187635 | None:intergenic | 40.0% | |
| GTCTCTCTGTTGGATATGTA+AGG | - | chr6.1:29188657-29188676 | MS.gene94848:intron | 40.0% | |
| TATAAAGGCGGTGTTTGTCA+GGG | + | chr6.1:29189409-29189428 | None:intergenic | 40.0% | |
| TCAACACTTTAACCATGGGT+AGG | + | chr6.1:29188421-29188440 | None:intergenic | 40.0% | |
| TCGTGTAGTCTTCTACTTCA+AGG | + | chr6.1:29188543-29188562 | None:intergenic | 40.0% | |
| TGCACTAGAAAGGAAAATCC+TGG | + | chr6.1:29186051-29186070 | None:intergenic | 40.0% | |
| TGGCAATCAACGTTAATCAC+CGG | + | chr6.1:29189029-29189048 | None:intergenic | 40.0% | |
| TTATTGTTTGCAGGAATGGC+TGG | - | chr6.1:29187455-29187474 | MS.gene94848:intron | 40.0% | |
| TTCACTTGGGTTTGACGTAA+GGG | - | chr6.1:29189082-29189101 | MS.gene94848:intron | 40.0% | |
| ! | AGGCAGCTATTTCCTCAAAT+GGG | + | chr6.1:29185526-29185545 | None:intergenic | 40.0% |
| ! | ATTCAAGTCAGCTAGCTTAC+AGG | + | chr6.1:29188058-29188077 | None:intergenic | 40.0% |
| ! | CATGGAAATGATCTCTGAGA+TGG | - | chr6.1:29187198-29187217 | MS.gene94848:intron | 40.0% |
| ! | CATTTTCATTGCATCAGTCG+AGG | + | chr6.1:29186318-29186337 | None:intergenic | 40.0% |
| ! | CGAGACTTCCTTTTACAGAT+TGG | - | chr6.1:29187994-29188013 | MS.gene94848:intron | 40.0% |
| ! | CTTCACAAGTTTGTTTCTCC+GGG | + | chr6.1:29185426-29185445 | None:intergenic | 40.0% |
| ! | GATGCGATTTTCTCATCCAA+TGG | - | chr6.1:29187551-29187570 | MS.gene94848:CDS | 40.0% |
| ! | GGTCCATCAGAAATTGACTT+TGG | - | chr6.1:29187229-29187248 | MS.gene94848:intron | 40.0% |
| ! | GTTAATCACCGGTTGTAACA+TGG | + | chr6.1:29189018-29189037 | None:intergenic | 40.0% |
| ! | TTCACAAGTTTGTTTCTCCG+GGG | + | chr6.1:29185425-29185444 | None:intergenic | 40.0% |
| ! | TTTGACGTAAGGGTTTGTTC+AGG | - | chr6.1:29189092-29189111 | MS.gene94848:intron | 40.0% |
| !! | ATCTCTGAGATGGACTTATC+AGG | - | chr6.1:29187208-29187227 | MS.gene94848:intron | 40.0% |
| !! | ATGTAAGGGTATTCAAGTGG+AGG | - | chr6.1:29188672-29188691 | MS.gene94848:intron | 40.0% |
| !! | TGTTAATACCTTTTGGAGGC+AGG | + | chr6.1:29185885-29185904 | None:intergenic | 40.0% |
| !!! | GCTTCGTTTTTTGTTGCTTC+GGG | + | chr6.1:29189580-29189599 | None:intergenic | 40.0% |
| AAGCCCTTAAGTCTCTCTGT+TGG | - | chr6.1:29188647-29188666 | MS.gene94848:intron | 45.0% | |
| ACAACATCCTAGCTCAGATC+AGG | - | chr6.1:29185466-29185485 | MS.gene94848:intron | 45.0% | |
| ACTTGCAGACTGGGCAAAAT+TGG | - | chr6.1:29187524-29187543 | MS.gene94848:intron | 45.0% | |
| ATCATACTTGCAGGCTACGT+CGG | - | chr6.1:29189505-29189524 | MS.gene94848:intron | 45.0% | |
| CAAAACAGGCTGCACTAGAA+AGG | + | chr6.1:29186061-29186080 | None:intergenic | 45.0% | |
| CACTCTCAAAGCCGTTTAAC+TGG | + | chr6.1:29188770-29188789 | None:intergenic | 45.0% | |
| CCTTGGAAAACTACACAAGC+TGG | + | chr6.1:29187764-29187783 | None:intergenic | 45.0% | |
| CTCAACCTGATGCTATTGCA+AGG | - | chr6.1:29188566-29188585 | MS.gene94848:intron | 45.0% | |
| CTCACTAATCTCCAATGTGG+AGG | + | chr6.1:29185546-29185565 | None:intergenic | 45.0% | |
| CTCCACATTGGAGATTAGTG+AGG | - | chr6.1:29185544-29185563 | MS.gene94848:intron | 45.0% | |
| CTCTCAAAGCCGTTTAACTG+GGG | + | chr6.1:29188768-29188787 | None:intergenic | 45.0% | |
| GATGACCTTGCAATAGCATC+AGG | + | chr6.1:29188574-29188593 | None:intergenic | 45.0% | |
| TAGGATTACCTGCCTCCAAA+AGG | - | chr6.1:29185874-29185893 | MS.gene94848:intron | 45.0% | |
| TCCTCAAATGGGTGATAGGA+TGG | + | chr6.1:29185515-29185534 | None:intergenic | 45.0% | |
| TGAAACGGAAACCCTGACTA+TGG | + | chr6.1:29185810-29185829 | None:intergenic | 45.0% | |
| TGATTGCCATTCATTGCAGG+AGG | - | chr6.1:29189040-29189059 | MS.gene94848:intron | 45.0% | |
| TGGAAAACTACACAAGCTGG+AGG | + | chr6.1:29187761-29187780 | None:intergenic | 45.0% | |
| TGTGTTTAGAGACAAGTGCC+TGG | - | chr6.1:29188089-29188108 | MS.gene94848:intron | 45.0% | |
| ! | ACAACAAGCCCAAAAGTGCA+AGG | + | chr6.1:29186996-29187015 | None:intergenic | 45.0% |
| ! | ACGCAGGTCTTATAACTCCT+TGG | + | chr6.1:29187781-29187800 | None:intergenic | 45.0% |
| ! | AGTTTGTTTCTCCGGGGAAA+TGG | + | chr6.1:29185419-29185438 | None:intergenic | 45.0% |
| ! | ATGATGAAGCACTTGCAGAC+TGG | - | chr6.1:29187514-29187533 | MS.gene94848:intron | 45.0% |
| ! | CCAGCTTGTGTAGTTTTCCA+AGG | - | chr6.1:29187761-29187780 | MS.gene94848:intron | 45.0% |
| ! | CGTTGATTGCCATTCATTGC+AGG | - | chr6.1:29189037-29189056 | MS.gene94848:intron | 45.0% |
| ! | GAGGCAGCTATTTCCTCAAA+TGG | + | chr6.1:29185527-29185546 | None:intergenic | 45.0% |
| ! | TGATGAAGCACTTGCAGACT+GGG | - | chr6.1:29187515-29187534 | MS.gene94848:intron | 45.0% |
| ! | TGTTGCTTCGGGTGATTTCT+TGG | + | chr6.1:29189569-29189588 | None:intergenic | 45.0% |
| ! | TTCGGCAGTACTGGATTGAT+TGG | + | chr6.1:29187843-29187862 | None:intergenic | 45.0% |
| !! | GACAGTGTTGGTGCGATTAA+TGG | - | chr6.1:29187890-29187909 | MS.gene94848:intron | 45.0% |
| AGAACAGGGTCACCGAATCT+AGG | + | chr6.1:29186854-29186873 | None:intergenic | 50.0% | |
| AGGGTCACCGAATCTAGGTA+TGG | + | chr6.1:29186849-29186868 | None:intergenic | 50.0% | |
| GCCATCCTATCACCCATTTG+AGG | - | chr6.1:29185511-29185530 | MS.gene94848:intron | 50.0% | |
| GGAAATAGCTGCCTCCACAT+TGG | - | chr6.1:29185532-29185551 | MS.gene94848:intron | 50.0% | |
| GGCTGCTCCATCCAATCAAT+TGG | + | chr6.1:29187740-29187759 | None:intergenic | 50.0% | |
| GGGTGAAACTTCCCAAGAAC+AGG | + | chr6.1:29186585-29186604 | None:intergenic | 50.0% | |
| GTTGTGCCTCCTGCAATGAA+TGG | + | chr6.1:29189049-29189068 | None:intergenic | 50.0% | |
| TACGAGGTATGACCTACCCA+TGG | - | chr6.1:29188406-29188425 | MS.gene94848:CDS | 50.0% | |
| TCATTGCATCAGTCGAGGGT+GGG | + | chr6.1:29186313-29186332 | None:intergenic | 50.0% | |
| TTCATTGCATCAGTCGAGGG+TGG | + | chr6.1:29186314-29186333 | None:intergenic | 50.0% | |
| ! | GGAGGCACAACTTATCTGTG+TGG | - | chr6.1:29189058-29189077 | MS.gene94848:intron | 50.0% |
| ACAGGCTCCTGATCTGAGCT+AGG | + | chr6.1:29185476-29185495 | None:intergenic | 55.0% | |
| ACCCGGGCACTCCATTTCCC+CGG | - | chr6.1:29185405-29185424 | MS.gene94848:intron | 65.0% | |
| ! | CTCCGGGGAAATGGAGTGCC+CGG | + | chr6.1:29185410-29185429 | None:intergenic | 65.0% |
| ! | TCCGGGGAAATGGAGTGCCC+GGG | + | chr6.1:29185409-29185428 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 29185268 | 29189622 | 29185268 | ID=MS.gene94848 |
| chr6.1 | mRNA | 29185268 | 29189622 | 29185268 | ID=MS.gene94848.t1;Parent=MS.gene94848 |
| chr6.1 | exon | 29189612 | 29189622 | 29189612 | ID=MS.gene94848.t1.exon1;Parent=MS.gene94848.t1 |
| chr6.1 | CDS | 29189612 | 29189622 | 29189612 | ID=cds.MS.gene94848.t1;Parent=MS.gene94848.t1 |
| chr6.1 | exon | 29189280 | 29189502 | 29189280 | ID=MS.gene94848.t1.exon2;Parent=MS.gene94848.t1 |
| chr6.1 | CDS | 29189280 | 29189502 | 29189280 | ID=cds.MS.gene94848.t1;Parent=MS.gene94848.t1 |
| chr6.1 | exon | 29188351 | 29188453 | 29188351 | ID=MS.gene94848.t1.exon3;Parent=MS.gene94848.t1 |
| chr6.1 | CDS | 29188351 | 29188453 | 29188351 | ID=cds.MS.gene94848.t1;Parent=MS.gene94848.t1 |
| chr6.1 | exon | 29188190 | 29188257 | 29188190 | ID=MS.gene94848.t1.exon4;Parent=MS.gene94848.t1 |
| chr6.1 | CDS | 29188190 | 29188257 | 29188190 | ID=cds.MS.gene94848.t1;Parent=MS.gene94848.t1 |
| chr6.1 | exon | 29187539 | 29187715 | 29187539 | ID=MS.gene94848.t1.exon5;Parent=MS.gene94848.t1 |
| chr6.1 | CDS | 29187539 | 29187715 | 29187539 | ID=cds.MS.gene94848.t1;Parent=MS.gene94848.t1 |
| chr6.1 | exon | 29187294 | 29187422 | 29187294 | ID=MS.gene94848.t1.exon6;Parent=MS.gene94848.t1 |
| chr6.1 | CDS | 29187294 | 29187422 | 29187294 | ID=cds.MS.gene94848.t1;Parent=MS.gene94848.t1 |
| chr6.1 | exon | 29186833 | 29187168 | 29186833 | ID=MS.gene94848.t1.exon7;Parent=MS.gene94848.t1 |
| chr6.1 | CDS | 29186833 | 29187168 | 29186833 | ID=cds.MS.gene94848.t1;Parent=MS.gene94848.t1 |
| chr6.1 | exon | 29186197 | 29186355 | 29186197 | ID=MS.gene94848.t1.exon8;Parent=MS.gene94848.t1 |
| chr6.1 | CDS | 29186197 | 29186355 | 29186197 | ID=cds.MS.gene94848.t1;Parent=MS.gene94848.t1 |
| chr6.1 | exon | 29185736 | 29185831 | 29185736 | ID=MS.gene94848.t1.exon9;Parent=MS.gene94848.t1 |
| chr6.1 | CDS | 29185736 | 29185831 | 29185736 | ID=cds.MS.gene94848.t1;Parent=MS.gene94848.t1 |
| chr6.1 | exon | 29185268 | 29185372 | 29185268 | ID=MS.gene94848.t1.exon10;Parent=MS.gene94848.t1 |
| chr6.1 | CDS | 29185268 | 29185372 | 29185268 | ID=cds.MS.gene94848.t1;Parent=MS.gene94848.t1 |
| Gene Sequence |
| Protein sequence |
