Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97499.t1 | XP_013453855.1 | 64 | 347 | 9 | 1 | 1 | 231 | 4 | 350 | 1.10E-110 | 409.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97499.t1 | Q39224 | 34.1 | 349 | 108 | 4 | 3 | 229 | 10 | 358 | 1.0e-48 | 194.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97499.t1 | A0A072UER0 | 64.0 | 347 | 9 | 1 | 1 | 231 | 4 | 350 | 7.8e-111 | 409.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049259 | MS.gene97499 | 0.805494 | 1.30E-49 | -1.69E-46 |
| MS.gene049549 | MS.gene97499 | 0.81314 | 2.98E-51 | -1.69E-46 |
| MS.gene049611 | MS.gene97499 | 0.834673 | 2.62E-56 | -1.69E-46 |
| MS.gene049634 | MS.gene97499 | 0.859114 | 5.17E-63 | -1.69E-46 |
| MS.gene050095 | MS.gene97499 | 0.816632 | 5.00E-52 | -1.69E-46 |
| MS.gene050096 | MS.gene97499 | 0.825609 | 4.27E-54 | -1.69E-46 |
| MS.gene050216 | MS.gene97499 | -0.819156 | 1.35E-52 | -1.69E-46 |
| MS.gene050380 | MS.gene97499 | 0.837452 | 5.16E-57 | -1.69E-46 |
| MS.gene050381 | MS.gene97499 | 0.857215 | 1.90E-62 | -1.69E-46 |
| MS.gene05079 | MS.gene97499 | 0.818502 | 1.90E-52 | -1.69E-46 |
| MS.gene050809 | MS.gene97499 | 0.830447 | 2.92E-55 | -1.69E-46 |
| MS.gene050868 | MS.gene97499 | -0.801854 | 7.40E-49 | -1.69E-46 |
| MS.gene050871 | MS.gene97499 | -0.805554 | 1.26E-49 | -1.69E-46 |
| MS.gene05104 | MS.gene97499 | 0.831261 | 1.85E-55 | -1.69E-46 |
| MS.gene051127 | MS.gene97499 | 0.834166 | 3.51E-56 | -1.69E-46 |
| MS.gene051138 | MS.gene97499 | 0.821417 | 4.08E-53 | -1.69E-46 |
| MS.gene051632 | MS.gene97499 | 0.824316 | 8.62E-54 | -1.69E-46 |
| MS.gene051863 | MS.gene97499 | 0.802292 | 6.01E-49 | -1.69E-46 |
| MS.gene05240 | MS.gene97499 | 0.835098 | 2.04E-56 | -1.69E-46 |
| MS.gene05244 | MS.gene97499 | 0.800785 | 1.22E-48 | -1.69E-46 |
| MS.gene052805 | MS.gene97499 | 0.829055 | 6.38E-55 | -1.69E-46 |
| MS.gene053031 | MS.gene97499 | 0.815921 | 7.22E-52 | -1.69E-46 |
| MS.gene053033 | MS.gene97499 | 0.814713 | 1.34E-51 | -1.69E-46 |
| MS.gene053406 | MS.gene97499 | 0.800941 | 1.14E-48 | -1.69E-46 |
| MS.gene053420 | MS.gene97499 | 0.867834 | 1.02E-65 | -1.69E-46 |
| MS.gene053488 | MS.gene97499 | 0.846054 | 2.76E-59 | -1.69E-46 |
| MS.gene053561 | MS.gene97499 | 0.828833 | 7.22E-55 | -1.69E-46 |
| MS.gene053887 | MS.gene97499 | 0.805718 | 1.17E-49 | -1.69E-46 |
| MS.gene054181 | MS.gene97499 | 0.804045 | 2.61E-49 | -1.69E-46 |
| MS.gene054290 | MS.gene97499 | 0.823346 | 1.46E-53 | -1.69E-46 |
| MS.gene055124 | MS.gene97499 | 0.887152 | 1.83E-72 | -1.69E-46 |
| MS.gene055154 | MS.gene97499 | 0.852004 | 6.14E-61 | -1.69E-46 |
| MS.gene055202 | MS.gene97499 | 0.832932 | 7.13E-56 | -1.69E-46 |
| MS.gene055942 | MS.gene97499 | 0.81635 | 5.79E-52 | -1.69E-46 |
| MS.gene055959 | MS.gene97499 | 0.897411 | 1.44E-76 | -1.69E-46 |
| MS.gene056224 | MS.gene97499 | 0.821847 | 3.25E-53 | -1.69E-46 |
| MS.gene056359 | MS.gene97499 | 0.807156 | 5.80E-50 | -1.69E-46 |
| MS.gene056422 | MS.gene97499 | -0.810457 | 1.14E-50 | -1.69E-46 |
| MS.gene056590 | MS.gene97499 | 0.805826 | 1.11E-49 | -1.69E-46 |
| MS.gene056591 | MS.gene97499 | 0.805173 | 1.52E-49 | -1.69E-46 |
| MS.gene056856 | MS.gene97499 | 0.852553 | 4.28E-61 | -1.69E-46 |
| MS.gene057544 | MS.gene97499 | 0.835 | 2.16E-56 | -1.69E-46 |
| MS.gene057549 | MS.gene97499 | 0.815862 | 7.44E-52 | -1.69E-46 |
| MS.gene057550 | MS.gene97499 | 0.825528 | 4.46E-54 | -1.69E-46 |
| MS.gene058093 | MS.gene97499 | 0.897669 | 1.12E-76 | -1.69E-46 |
| MS.gene058099 | MS.gene97499 | 0.876997 | 8.94E-69 | -1.69E-46 |
| MS.gene058108 | MS.gene97499 | 0.842629 | 2.30E-58 | -1.69E-46 |
| MS.gene058109 | MS.gene97499 | 0.853279 | 2.65E-61 | -1.69E-46 |
| MS.gene058171 | MS.gene97499 | 0.865147 | 7.29E-65 | -1.69E-46 |
| MS.gene058173 | MS.gene97499 | 0.855583 | 5.73E-62 | -1.69E-46 |
| MS.gene058175 | MS.gene97499 | 0.862601 | 4.51E-64 | -1.69E-46 |
| MS.gene058177 | MS.gene97499 | 0.807283 | 5.45E-50 | -1.69E-46 |
| MS.gene058179 | MS.gene97499 | 0.883807 | 3.28E-71 | -1.69E-46 |
| MS.gene058180 | MS.gene97499 | 0.85228 | 5.12E-61 | -1.69E-46 |
| MS.gene058268 | MS.gene97499 | 0.809588 | 1.76E-50 | -1.69E-46 |
| MS.gene058269 | MS.gene97499 | 0.808389 | 3.17E-50 | -1.69E-46 |
| MS.gene058603 | MS.gene97499 | 0.809116 | 2.22E-50 | -1.69E-46 |
| MS.gene058840 | MS.gene97499 | 0.867787 | 1.06E-65 | -1.69E-46 |
| MS.gene059037 | MS.gene97499 | 0.900124 | 1.00E-77 | -1.69E-46 |
| MS.gene059038 | MS.gene97499 | 0.87783 | 4.59E-69 | -1.69E-46 |
| MS.gene059044 | MS.gene97499 | 0.800807 | 1.21E-48 | -1.69E-46 |
| MS.gene059045 | MS.gene97499 | 0.853628 | 2.11E-61 | -1.69E-46 |
| MS.gene05913 | MS.gene97499 | -0.801413 | 9.11E-49 | -1.69E-46 |
| MS.gene059367 | MS.gene97499 | -0.801759 | 7.74E-49 | -1.69E-46 |
| MS.gene059402 | MS.gene97499 | 0.803698 | 3.08E-49 | -1.69E-46 |
| MS.gene059690 | MS.gene97499 | 0.815111 | 1.09E-51 | -1.69E-46 |
| MS.gene059694 | MS.gene97499 | 0.818654 | 1.75E-52 | -1.69E-46 |
| MS.gene059697 | MS.gene97499 | 0.822062 | 2.90E-53 | -1.69E-46 |
| MS.gene059865 | MS.gene97499 | -0.804729 | 1.88E-49 | -1.69E-46 |
| MS.gene059916 | MS.gene97499 | 0.803191 | 3.92E-49 | -1.69E-46 |
| MS.gene059953 | MS.gene97499 | 0.805836 | 1.10E-49 | -1.69E-46 |
| MS.gene059955 | MS.gene97499 | 0.812902 | 3.36E-51 | -1.69E-46 |
| MS.gene060205 | MS.gene97499 | 0.80125 | 9.84E-49 | -1.69E-46 |
| MS.gene060482 | MS.gene97499 | -0.80132 | 9.52E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 55 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAATGATGCAGGTCTTTC+AGG | 0.141622 | 5.3:-37134367 | None:intergenic |
| TGGAAGAGAAGAAGAAATTT+TGG | 0.275911 | 5.3:+37133037 | MS.gene97499:CDS |
| CGAGGATTCCTTTCATCTAA+TGG | 0.295402 | 5.3:-37133156 | None:intergenic |
| CCAAATCCTTCCATGTCATT+TGG | 0.354285 | 5.3:-37133066 | None:intergenic |
| TTTCCATTGCTGCATTTCAT+AGG | 0.363746 | 5.3:+37134299 | MS.gene97499:CDS |
| CCAAATGACATGGAAGGATT+TGG | 0.380420 | 5.3:+37133066 | MS.gene97499:CDS |
| ATCGACCTTGGTAAATTGTT+AGG | 0.381623 | 5.3:+37132186 | MS.gene97499:CDS |
| AGACCTTGCTTGTAAAGAAT+GGG | 0.400804 | 5.3:+37132236 | MS.gene97499:CDS |
| GTTGATTGAAAAGGTAAAGA+TGG | 0.428723 | 5.3:+37132987 | MS.gene97499:CDS |
| TATTTCTCACGCAAGCTAGA+AGG | 0.431799 | 5.3:+37134421 | MS.gene97499:CDS |
| ACATGAGTAGGGTCTTGATT+TGG | 0.433810 | 5.3:-37132129 | None:intergenic |
| TTGCTCGATGTTCAATGCTT+CGG | 0.438986 | 5.3:-37134252 | None:intergenic |
| CAGTTAATTCAGAGAAAGAA+AGG | 0.449951 | 5.3:+37134275 | MS.gene97499:CDS |
| AATTTACCAAGGTCGATAAC+TGG | 0.453044 | 5.3:-37132180 | None:intergenic |
| CAACACTTCGTTGATTGAAA+AGG | 0.453373 | 5.3:+37132978 | MS.gene97499:CDS |
| TAGACCTTGCTTGTAAAGAA+TGG | 0.454171 | 5.3:+37132235 | MS.gene97499:CDS |
| TTGCTCTGGAACTTCAATGA+TGG | 0.454680 | 5.3:-37132097 | None:intergenic |
| TGAATGATGCAGGTCTTTCA+GGG | 0.467010 | 5.3:-37134366 | None:intergenic |
| CTTTCAGGGGTAACAAGACT+TGG | 0.468383 | 5.3:-37134352 | None:intergenic |
| TTGATTGAAAAGGTAAAGAT+GGG | 0.477556 | 5.3:+37132988 | MS.gene97499:CDS |
| TTTGGACGAAGAAATTGCTC+TGG | 0.479151 | 5.3:-37132111 | None:intergenic |
| TCTTCTTCTCTTCCACTGGT+AGG | 0.479236 | 5.3:-37133029 | None:intergenic |
| AGTCTTGTCTTGACGTAATG+AGG | 0.481535 | 5.3:+37134446 | MS.gene97499:CDS |
| AATTTCTTCTTCTCTTCCAC+TGG | 0.489167 | 5.3:-37133033 | None:intergenic |
| TCATTCAAAGGTATTGCTGT+TGG | 0.492628 | 5.3:+37134382 | MS.gene97499:CDS |
| GACGTAATGAGGTTGGAAAA+TGG | 0.509343 | 5.3:+37134457 | MS.gene97499:CDS |
| CTGATGATCAGAAATTAGAA+TGG | 0.510997 | 5.3:+37133106 | MS.gene97499:CDS |
| GGGGTAACAAGACTTGGTCT+TGG | 0.516646 | 5.3:-37134346 | None:intergenic |
| GCAATACCTTTGAATGATGC+AGG | 0.526918 | 5.3:-37134376 | None:intergenic |
| TGCGTGAGAAATATGCTTTG+AGG | 0.529244 | 5.3:-37134411 | None:intergenic |
| TGATGATCAGAAATTAGAAT+GGG | 0.530679 | 5.3:+37133107 | MS.gene97499:CDS |
| CTAATGGAAGTGTGGTAATG+AGG | 0.530737 | 5.3:-37133140 | None:intergenic |
| TTGTCTTGACGTAATGAGGT+TGG | 0.531648 | 5.3:+37134450 | MS.gene97499:CDS |
| AACCCCATTCTTTACAAGCA+AGG | 0.534883 | 5.3:-37132239 | None:intergenic |
| CCACACTTCCATTAGATGAA+AGG | 0.547315 | 5.3:+37133148 | MS.gene97499:CDS |
| TTGTGTTGAGCACATGAGTA+GGG | 0.549234 | 5.3:-37132140 | None:intergenic |
| GTATTACAGATAGTGACAAA+TGG | 0.550244 | 5.3:+37134223 | MS.gene97499:intron |
| CTTATGCAGATAATCAATCA+TGG | 0.550366 | 5.3:+37132952 | MS.gene97499:intron |
| TTTGCAAGCTCGTGCACAGA+AGG | 0.571239 | 5.3:-37132069 | None:intergenic |
| CTTAAAATTGTATTCACATG+AGG | 0.572204 | 5.3:-37134322 | None:intergenic |
| AAGGTTTGGAACCTCTCGAT+TGG | 0.588147 | 5.3:+37132044 | None:intergenic |
| GAAAGACCTGCATCATTCAA+AGG | 0.591981 | 5.3:+37134370 | MS.gene97499:CDS |
| AGAATTCTTAAGCCTACCAG+TGG | 0.596497 | 5.3:+37133017 | MS.gene97499:CDS |
| GACCTTGCTTGTAAAGAATG+GGG | 0.599209 | 5.3:+37132237 | MS.gene97499:CDS |
| CCTTTCATCTAATGGAAGTG+TGG | 0.601777 | 5.3:-37133148 | None:intergenic |
| CAAGTACCAGTTATCGACCT+TGG | 0.604034 | 5.3:+37132174 | MS.gene97499:CDS |
| AGGCCTATGAAATGCAGCAA+TGG | 0.610164 | 5.3:-37134302 | None:intergenic |
| AAAATACTTGGAAATAAGCG+AGG | 0.612315 | 5.3:-37133174 | None:intergenic |
| TTGGCAAACTCCAAATGACA+TGG | 0.613342 | 5.3:+37133056 | MS.gene97499:CDS |
| TTTGTGTTGAGCACATGAGT+AGG | 0.618384 | 5.3:-37132141 | None:intergenic |
| CAAACTCCAAATGACATGGA+AGG | 0.624198 | 5.3:+37133060 | MS.gene97499:CDS |
| GAATGATGCAGGTCTTTCAG+GGG | 0.634371 | 5.3:-37134365 | None:intergenic |
| CACAGAAGGTACCAATCGAG+AGG | 0.663153 | 5.3:-37132055 | None:intergenic |
| CTTCACCTAACAATTTACCA+AGG | 0.680448 | 5.3:-37132191 | None:intergenic |
| AGGTCGATAACTGGTACTTG+TGG | 0.691439 | 5.3:-37132171 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTTAATAAACTTTGATT+AGG | + | chr5.3:37134049-37134068 | MS.gene97499:intron | 10.0% |
| !! | TGTTCAAAAATAATAAAAAA+TGG | - | chr5.3:37133495-37133514 | None:intergenic | 10.0% |
| !! | ACCTTAATCTTTAAATTAAA+TGG | + | chr5.3:37134201-37134220 | MS.gene97499:intron | 15.0% |
| !!! | AAATATACAAGTGTTTTTTA+CGG | - | chr5.3:37132427-37132446 | None:intergenic | 15.0% |
| !!! | ACCATTTAATTTAAAGATTA+AGG | - | chr5.3:37134205-37134224 | None:intergenic | 15.0% |
| !!! | ATAACAAATTTTGATTAATC+TGG | - | chr5.3:37133415-37133434 | None:intergenic | 15.0% |
| !!! | TTTAATTTAAAGATTAAGGT+AGG | - | chr5.3:37134201-37134220 | None:intergenic | 15.0% |
| !! | CTCATTAATTAATTCAACTT+TGG | + | chr5.3:37134146-37134165 | MS.gene97499:intron | 20.0% |
| !! | GATTAATAATAATTCAAACC+TGG | - | chr5.3:37132269-37132288 | None:intergenic | 20.0% |
| !! | TATAGATACAAGTTAATGAA+GGG | + | chr5.3:37132884-37132903 | MS.gene97499:intron | 20.0% |
| !! | TATGTAAGTTGCAAAATAAA+TGG | + | chr5.3:37132320-37132339 | MS.gene97499:intron | 20.0% |
| !!! | ATTCAATCATTTTGTTCTAA+AGG | - | chr5.3:37133557-37133576 | None:intergenic | 20.0% |
| !!! | TGCAAAATTTGTCTAAAATT+CGG | - | chr5.3:37133526-37133545 | None:intergenic | 20.0% |
| !!! | TTTAATTTGTAACACATCAT+TGG | + | chr5.3:37132682-37132701 | MS.gene97499:intron | 20.0% |
| ! | AAAATGTGTTCAATACAATG+TGG | + | chr5.3:37133302-37133321 | MS.gene97499:intron | 25.0% |
| ! | CAATAAGTTGTGATATATGT+TGG | + | chr5.3:37132571-37132590 | MS.gene97499:intron | 25.0% |
| ! | CACTAATTAACAAATTGACA+TGG | + | chr5.3:37133592-37133611 | MS.gene97499:intron | 25.0% |
| ! | CTATAGATACAAGTTAATGA+AGG | + | chr5.3:37132883-37132902 | MS.gene97499:intron | 25.0% |
| ! | CTTAAAATTGTATTCACATG+AGG | - | chr5.3:37134325-37134344 | None:intergenic | 25.0% |
| ! | GAAATAACAACAGAAATTAG+AGG | + | chr5.3:37133446-37133465 | MS.gene97499:intron | 25.0% |
| ! | TGATGATCAGAAATTAGAAT+GGG | + | chr5.3:37133107-37133126 | MS.gene97499:CDS | 25.0% |
| ! | TTGATTGAAAAGGTAAAGAT+GGG | + | chr5.3:37132988-37133007 | MS.gene97499:CDS | 25.0% |
| !! | TTTTACAATCATTAGCCAAA+TGG | + | chr5.3:37133670-37133689 | MS.gene97499:intron | 25.0% |
| !!! | TTTTGAAACAACAATAGTCT+TGG | - | chr5.3:37132803-37132822 | None:intergenic | 25.0% |
| AAAATACTTGGAAATAAGCG+AGG | - | chr5.3:37133177-37133196 | None:intergenic | 30.0% | |
| AATCATTAGCCAAATGGAAA+AGG | + | chr5.3:37133676-37133695 | MS.gene97499:intron | 30.0% | |
| AATGCATTTGTCATCAACAT+TGG | + | chr5.3:37133917-37133936 | MS.gene97499:intron | 30.0% | |
| ACATCAATTATTGAGAGAGT+AGG | - | chr5.3:37133220-37133239 | None:intergenic | 30.0% | |
| AGATAAGAAAAGATGGACAA+TGG | + | chr5.3:37133873-37133892 | MS.gene97499:intron | 30.0% | |
| ATCAAGTTCGTGAAGAAAAA+TGG | - | chr5.3:37132912-37132931 | None:intergenic | 30.0% | |
| CAGTTAATTCAGAGAAAGAA+AGG | + | chr5.3:37134275-37134294 | MS.gene97499:CDS | 30.0% | |
| CTAAATGGTTGGAAAATACT+TGG | - | chr5.3:37133189-37133208 | None:intergenic | 30.0% | |
| CTGATGATCAGAAATTAGAA+TGG | + | chr5.3:37133106-37133125 | MS.gene97499:CDS | 30.0% | |
| CTTATGCAGATAATCAATCA+TGG | + | chr5.3:37132952-37132971 | MS.gene97499:intron | 30.0% | |
| GTAAGTTGCAAAATAAATGG+TGG | + | chr5.3:37132323-37132342 | MS.gene97499:intron | 30.0% | |
| GTATTACAGATAGTGACAAA+TGG | + | chr5.3:37134223-37134242 | MS.gene97499:intron | 30.0% | |
| GTTGATTGAAAAGGTAAAGA+TGG | + | chr5.3:37132987-37133006 | MS.gene97499:CDS | 30.0% | |
| TTATGAATATGCCATTCAAC+AGG | + | chr5.3:37132830-37132849 | MS.gene97499:intron | 30.0% | |
| ! | ATTGTCCATCTTTTCTTATC+TGG | - | chr5.3:37133874-37133893 | None:intergenic | 30.0% |
| ! | CAAGTATTTTCCAACCATTT+AGG | + | chr5.3:37133187-37133206 | MS.gene97499:intron | 30.0% |
| ! | TGGAAGAGAAGAAGAAATTT+TGG | + | chr5.3:37133037-37133056 | MS.gene97499:CDS | 30.0% |
| ! | TTCAGTCCAATAACATTTTC+TGG | - | chr5.3:37133791-37133810 | None:intergenic | 30.0% |
| !! | ATGTTGATGACAAATGCATT+AGG | - | chr5.3:37133917-37133936 | None:intergenic | 30.0% |
| !! | TGTTGATGACAAATGCATTA+GGG | - | chr5.3:37133916-37133935 | None:intergenic | 30.0% |
| !!! | CAATCATTTTGTTCTAAAGG+TGG | - | chr5.3:37133554-37133573 | None:intergenic | 30.0% |
| AATTTACCAAGGTCGATAAC+TGG | - | chr5.3:37132183-37132202 | None:intergenic | 35.0% | |
| AATTTCTTCTTCTCTTCCAC+TGG | - | chr5.3:37133036-37133055 | None:intergenic | 35.0% | |
| AGACCTTGCTTGTAAAGAAT+GGG | + | chr5.3:37132236-37132255 | MS.gene97499:CDS | 35.0% | |
| AGGAAACAAACCTAAATGGT+TGG | - | chr5.3:37133200-37133219 | None:intergenic | 35.0% | |
| ATCGACCTTGGTAAATTGTT+AGG | + | chr5.3:37132186-37132205 | MS.gene97499:CDS | 35.0% | |
| ATGTGTTCAATACAATGTGG+TGG | + | chr5.3:37133305-37133324 | MS.gene97499:intron | 35.0% | |
| CATCAACATTGGAGATATGT+TGG | + | chr5.3:37133928-37133947 | MS.gene97499:intron | 35.0% | |
| CCTCAACCAGAAAATGTTAT+TGG | + | chr5.3:37133782-37133801 | MS.gene97499:intron | 35.0% | |
| CTTCACCTAACAATTTACCA+AGG | - | chr5.3:37132194-37132213 | None:intergenic | 35.0% | |
| GAGTAGGAAACAAACCTAAA+TGG | - | chr5.3:37133204-37133223 | None:intergenic | 35.0% | |
| GTATAAACTCGCATGTTGAA+CGG | + | chr5.3:37132523-37132542 | MS.gene97499:intron | 35.0% | |
| TAGACCTTGCTTGTAAAGAA+TGG | + | chr5.3:37132235-37132254 | MS.gene97499:CDS | 35.0% | |
| TCACAACTTATTGTCATTCG+TGG | - | chr5.3:37132564-37132583 | None:intergenic | 35.0% | |
| TGATATTTGTGTATGCTGAG+TGG | - | chr5.3:37132861-37132880 | None:intergenic | 35.0% | |
| TTTCCATTGCTGCATTTCAT+AGG | + | chr5.3:37134299-37134318 | MS.gene97499:CDS | 35.0% | |
| ! | CAACACTTCGTTGATTGAAA+AGG | + | chr5.3:37132978-37132997 | MS.gene97499:CDS | 35.0% |
| ! | TAATTGTGTTGACCAATGCA+GGG | - | chr5.3:37132607-37132626 | None:intergenic | 35.0% |
| ! | TTAATTGTGTTGACCAATGC+AGG | - | chr5.3:37132608-37132627 | None:intergenic | 35.0% |
| !! | TCATTCAAAGGTATTGCTGT+TGG | + | chr5.3:37134382-37134401 | MS.gene97499:CDS | 35.0% |
| !!! | CCAATAACATTTTCTGGTTG+AGG | - | chr5.3:37133785-37133804 | None:intergenic | 35.0% |
| !!! | TAAAGAATGGGGTTTTTTCC+AGG | + | chr5.3:37132248-37132267 | MS.gene97499:CDS | 35.0% |
| AACCCCATTCTTTACAAGCA+AGG | - | chr5.3:37132242-37132261 | None:intergenic | 40.0% | |
| ACATGAGTAGGGTCTTGATT+TGG | - | chr5.3:37132132-37132151 | None:intergenic | 40.0% | |
| ACATGCGAGTTTATACAGAG+CGG | - | chr5.3:37132519-37132538 | None:intergenic | 40.0% | |
| ACATTACTCAAGCAATGAGG+TGG | + | chr5.3:37133741-37133760 | MS.gene97499:intron | 40.0% | |
| ACCACATTACTCAAGCAATG+AGG | + | chr5.3:37133738-37133757 | MS.gene97499:intron | 40.0% | |
| ACCTCATTGCTTGAGTAATG+TGG | - | chr5.3:37133742-37133761 | None:intergenic | 40.0% | |
| AGAATTCTTAAGCCTACCAG+TGG | + | chr5.3:37133017-37133036 | MS.gene97499:CDS | 40.0% | |
| ATGACAAATGCATTAGGGAG+GGG | - | chr5.3:37133911-37133930 | None:intergenic | 40.0% | |
| CAAACTCCAAATGACATGGA+AGG | + | chr5.3:37133060-37133079 | MS.gene97499:CDS | 40.0% | |
| CAACATTGGAGATATGTTGG+AGG | + | chr5.3:37133931-37133950 | MS.gene97499:intron | 40.0% | |
| CCAAATCCTTCCATGTCATT+TGG | - | chr5.3:37133069-37133088 | None:intergenic | 40.0% | |
| CCAAATGACATGGAAGGATT+TGG | + | chr5.3:37133066-37133085 | MS.gene97499:CDS | 40.0% | |
| CCACACTTCCATTAGATGAA+AGG | + | chr5.3:37133148-37133167 | MS.gene97499:CDS | 40.0% | |
| CCTTTCATCTAATGGAAGTG+TGG | - | chr5.3:37133151-37133170 | None:intergenic | 40.0% | |
| CGAGGATTCCTTTCATCTAA+TGG | - | chr5.3:37133159-37133178 | None:intergenic | 40.0% | |
| CTGAATCCTCATTCTGATGT+TGG | + | chr5.3:37133806-37133825 | MS.gene97499:intron | 40.0% | |
| CTTTGCCCATGAATTAGCAA+AGG | - | chr5.3:37133369-37133388 | None:intergenic | 40.0% | |
| CTTTGCTAATTCATGGGCAA+AGG | + | chr5.3:37133367-37133386 | MS.gene97499:intron | 40.0% | |
| GAAAGACCTGCATCATTCAA+AGG | + | chr5.3:37134370-37134389 | MS.gene97499:CDS | 40.0% | |
| GACCTTGCTTGTAAAGAATG+GGG | + | chr5.3:37132237-37132256 | MS.gene97499:CDS | 40.0% | |
| GACGTAATGAGGTTGGAAAA+TGG | + | chr5.3:37134457-37134476 | MS.gene97499:CDS | 40.0% | |
| GATGACAAATGCATTAGGGA+GGG | - | chr5.3:37133912-37133931 | None:intergenic | 40.0% | |
| GCAATACCTTTGAATGATGC+AGG | - | chr5.3:37134379-37134398 | None:intergenic | 40.0% | |
| GGAGATATGTTGGAGGTAAT+TGG | + | chr5.3:37133938-37133957 | MS.gene97499:intron | 40.0% | |
| TATTTCTCACGCAAGCTAGA+AGG | + | chr5.3:37134421-37134440 | MS.gene97499:CDS | 40.0% | |
| TGAATGATGCAGGTCTTTCA+GGG | - | chr5.3:37134369-37134388 | None:intergenic | 40.0% | |
| TGATGACAAATGCATTAGGG+AGG | - | chr5.3:37133913-37133932 | None:intergenic | 40.0% | |
| TGCGTGAGAAATATGCTTTG+AGG | - | chr5.3:37134414-37134433 | None:intergenic | 40.0% | |
| TGTTCAATACAATGTGGTGG+AGG | + | chr5.3:37133308-37133327 | MS.gene97499:intron | 40.0% | |
| TTGAATGATGCAGGTCTTTC+AGG | - | chr5.3:37134370-37134389 | None:intergenic | 40.0% | |
| TTGCTCGATGTTCAATGCTT+CGG | - | chr5.3:37134255-37134274 | None:intergenic | 40.0% | |
| TTGGCAAACTCCAAATGACA+TGG | + | chr5.3:37133056-37133075 | MS.gene97499:CDS | 40.0% | |
| TTGTCTTGACGTAATGAGGT+TGG | + | chr5.3:37134450-37134469 | MS.gene97499:CDS | 40.0% | |
| TTGTGTTGAGCACATGAGTA+GGG | - | chr5.3:37132143-37132162 | None:intergenic | 40.0% | |
| TTTGGACGAAGAAATTGCTC+TGG | - | chr5.3:37132114-37132133 | None:intergenic | 40.0% | |
| TTTGTGTTGAGCACATGAGT+AGG | - | chr5.3:37132144-37132163 | None:intergenic | 40.0% | |
| ! | AGTCTTGTCTTGACGTAATG+AGG | + | chr5.3:37134446-37134465 | MS.gene97499:CDS | 40.0% |
| ! | CTAATGGAAGTGTGGTAATG+AGG | - | chr5.3:37133143-37133162 | None:intergenic | 40.0% |
| ! | GTCCATCTTTTCTTATCTGG+AGG | - | chr5.3:37133871-37133890 | None:intergenic | 40.0% |
| ! | TCTTGAGAGCCTTTTCCATT+TGG | - | chr5.3:37133688-37133707 | None:intergenic | 40.0% |
| !! | TTATACAGAGCGGGTTAAAC+TGG | - | chr5.3:37132509-37132528 | None:intergenic | 40.0% |
| !! | TTGCTCTGGAACTTCAATGA+TGG | - | chr5.3:37132100-37132119 | None:intergenic | 40.0% |
| !!! | ACATTTTCTGGTTGAGGACA+TGG | - | chr5.3:37133779-37133798 | None:intergenic | 40.0% |
| AGGCCTATGAAATGCAGCAA+TGG | - | chr5.3:37134305-37134324 | None:intergenic | 45.0% | |
| AGGTCGATAACTGGTACTTG+TGG | - | chr5.3:37132174-37132193 | None:intergenic | 45.0% | |
| CAAGTACCAGTTATCGACCT+TGG | + | chr5.3:37132174-37132193 | MS.gene97499:CDS | 45.0% | |
| CATGCGAGTTTATACAGAGC+GGG | - | chr5.3:37132518-37132537 | None:intergenic | 45.0% | |
| CTCCAAGCCAATGAGATAGA+AGG | + | chr5.3:37133845-37133864 | MS.gene97499:intron | 45.0% | |
| CTGGAAACAAAGTCGTAACG+TGG | - | chr5.3:37133396-37133415 | None:intergenic | 45.0% | |
| CTGGAAACTAACTCCTAACG+TGG | + | chr5.3:37133340-37133359 | MS.gene97499:intron | 45.0% | |
| CTTTCAGGGGTAACAAGACT+TGG | - | chr5.3:37134355-37134374 | None:intergenic | 45.0% | |
| GAATGATGCAGGTCTTTCAG+GGG | - | chr5.3:37134368-37134387 | None:intergenic | 45.0% | |
| GGCCTCCAGATAAGAAAAGA+TGG | + | chr5.3:37133866-37133885 | MS.gene97499:intron | 45.0% | |
| TCTTCTTCTCTTCCACTGGT+AGG | - | chr5.3:37133032-37133051 | None:intergenic | 45.0% | |
| TGCCCATGAATTAGCAAAGG+CGG | - | chr5.3:37133366-37133385 | None:intergenic | 45.0% | |
| TGCTAATTCATGGGCAAAGG+CGG | + | chr5.3:37133370-37133389 | MS.gene97499:intron | 45.0% | |
| ! | AAGGCACCAACATCAGAATG+AGG | - | chr5.3:37133815-37133834 | None:intergenic | 45.0% |
| !! | CTATCTCATTGGCTTGGAGA+AGG | - | chr5.3:37133844-37133863 | None:intergenic | 45.0% |
| !! | GAGTGGACTAACCTGTTGAA+TGG | - | chr5.3:37132844-37132863 | None:intergenic | 45.0% |
| !! | TTTCTGGTTGAGGACATGGA+GGG | - | chr5.3:37133775-37133794 | None:intergenic | 45.0% |
| !!! | TTTTCTGGTTGAGGACATGG+AGG | - | chr5.3:37133776-37133795 | None:intergenic | 45.0% |
| CTGGAGGCCTTCTATCTCAT+TGG | - | chr5.3:37133855-37133874 | None:intergenic | 50.0% | |
| GGCCGCCTTTGCTAATTCAT+GGG | + | chr5.3:37133361-37133380 | MS.gene97499:intron | 50.0% | |
| GGCTTGGAGAAGGATGGTTA+AGG | - | chr5.3:37133834-37133853 | None:intergenic | 50.0% | |
| TGGCCGCCTTTGCTAATTCA+TGG | + | chr5.3:37133360-37133379 | MS.gene97499:intron | 50.0% | |
| TTTGCAAGCTCGTGCACAGA+AGG | - | chr5.3:37132072-37132091 | None:intergenic | 50.0% | |
| ! | GGCCTTCTATCTCATTGGCT+TGG | - | chr5.3:37133850-37133869 | None:intergenic | 50.0% |
| ! | GGGGTAACAAGACTTGGTCT+TGG | - | chr5.3:37134349-37134368 | None:intergenic | 50.0% |
| !! | CACAGAAGGTACCAATCGAG+AGG | - | chr5.3:37132058-37132077 | None:intergenic | 50.0% |
| !! | CTCATTGGCTTGGAGAAGGA+TGG | - | chr5.3:37133840-37133859 | None:intergenic | 50.0% |
| GCATTAGGGAGGGGTTGAAC+AGG | - | chr5.3:37133902-37133921 | None:intergenic | 55.0% | |
| TTAGCAAAGGCGGCCACGTT+AGG | - | chr5.3:37133356-37133375 | None:intergenic | 55.0% | |
| ! | GTGGTGGAGGAAGCACAATC+TGG | + | chr5.3:37133321-37133340 | MS.gene97499:intron | 55.0% |
| GGTCTGAGTCTGCCCTGCAT+TGG | + | chr5.3:37132592-37132611 | MS.gene97499:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 37132047 | 37134492 | 37132047 | ID=MS.gene97499 |
| chr5.3 | mRNA | 37132047 | 37134492 | 37132047 | ID=MS.gene97499.t1;Parent=MS.gene97499 |
| chr5.3 | exon | 37132047 | 37132269 | 37132047 | ID=MS.gene97499.t1.exon1;Parent=MS.gene97499.t1 |
| chr5.3 | CDS | 37132047 | 37132269 | 37132047 | ID=cds.MS.gene97499.t1;Parent=MS.gene97499.t1 |
| chr5.3 | exon | 37132961 | 37133189 | 37132961 | ID=MS.gene97499.t1.exon2;Parent=MS.gene97499.t1 |
| chr5.3 | CDS | 37132961 | 37133189 | 37132961 | ID=cds.MS.gene97499.t1;Parent=MS.gene97499.t1 |
| chr5.3 | exon | 37134236 | 37134492 | 37134236 | ID=MS.gene97499.t1.exon3;Parent=MS.gene97499.t1 |
| chr5.3 | CDS | 37134236 | 37134492 | 37134236 | ID=cds.MS.gene97499.t1;Parent=MS.gene97499.t1 |
| Gene Sequence |
| Protein sequence |
