AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023881.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023881.01.T01 MTR_8g104190 74.937 395 14 5 16 328 25 416 0.0 564
MsG0480023881.01.T01 MTR_1g110870 34.940 415 154 14 19 324 26 433 1.09e-50 174
MsG0480023881.01.T01 MTR_1g013450 28.296 311 174 13 24 313 16 298 3.08e-19 87.0
MsG0480023881.01.T01 MTR_7g032240 82.222 45 8 0 268 312 307 351 4.71e-16 78.2
MsG0480023881.01.T01 MTR_5g072780 52.439 82 31 2 239 312 135 216 3.04e-15 73.9
MsG0480023881.01.T01 MTR_4g127420 73.810 42 11 0 265 306 337 378 1.14e-12 68.6
MsG0480023881.01.T01 MTR_4g128930 54.412 68 29 1 246 313 276 341 1.63e-12 68.2
MsG0480023881.01.T01 MTR_3g105710 70.455 44 13 0 270 313 232 275 1.07e-11 65.1
MsG0480023881.01.T01 MTR_7g018170 70.455 44 13 0 270 313 327 370 1.15e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023881.01.T01 AT1G25440 39.744 390 132 17 18 312 22 403 6.80e-61 200
MsG0480023881.01.T01 AT1G68520 36.856 388 146 15 18 314 22 401 3.90e-55 185
MsG0480023881.01.T01 AT1G73870 36.000 375 154 12 16 314 25 389 7.91e-49 168
MsG0480023881.01.T01 AT1G49130 36.129 310 152 14 24 313 38 321 1.56e-41 147
MsG0480023881.01.T01 AT1G49130 36.129 310 152 14 24 313 31 314 1.59e-41 147
MsG0480023881.01.T01 AT4G25990 65.625 64 20 1 249 312 322 383 4.01e-17 82.0
MsG0480023881.01.T01 AT5G57180 77.083 48 11 0 265 312 378 425 7.51e-17 81.3
MsG0480023881.01.T01 AT1G07050 50.633 79 34 2 239 312 115 193 2.96e-15 73.6
MsG0480023881.01.T01 AT5G14370 42.017 119 50 4 197 312 234 336 8.94e-15 74.7
MsG0480023881.01.T01 AT5G57660 27.219 338 191 17 7 313 15 328 1.28e-14 74.3
MsG0480023881.01.T01 AT4G25990 53.165 79 20 2 249 312 322 398 8.42e-14 72.0
MsG0480023881.01.T01 AT4G25990 63.793 58 19 1 249 306 322 377 1.57e-13 71.2
MsG0480023881.01.T01 AT5G57180 76.190 42 10 0 265 306 378 419 3.81e-13 70.1
MsG0480023881.01.T01 AT5G24930 70.455 44 13 0 270 313 295 338 1.59e-11 65.1
MsG0480023881.01.T01 AT2G24790 70.455 44 13 0 270 313 229 272 2.48e-11 63.9
MsG0480023881.01.T01 AT1G07050 46.575 73 34 2 239 306 115 187 5.28e-11 61.6
MsG0480023881.01.T01 AT3G02380 69.767 43 13 0 270 312 278 320 6.07e-11 63.2

Find 80 sgRNAs with CRISPR-Local

Find 107 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAAACGTCCTTTCATTCT+TGG 0.215353 4:-90837491 None:intergenic
TTCAAATGTTGATGTTTATA+TGG 0.236486 4:+90837858 MsG0480023881.01.T01:three_prime_UTR
AACTTGGATTGATTAATATT+TGG 0.252165 4:+90837627 MsG0480023881.01.T01:three_prime_UTR
TTGATGTTTATATGGTTAAT+TGG 0.276986 4:+90837866 MsG0480023881.01.T01:three_prime_UTR
TTGTAAGGAACAATAATAAT+AGG 0.284284 4:-90837825 None:intergenic
TTGTCATGGTTGTGACAATT+TGG 0.309873 4:+90836191 MsG0480023881.01.T01:CDS
GATGCAGATGCAGGTGCCTT+GGG 0.322557 4:+90836092 None:intergenic
ATGATTCATGGCAAAACTTA+TGG 0.330468 4:+90837050 MsG0480023881.01.T01:CDS
ATGGAGAAGTAAGAAGCTTA+AGG 0.355490 4:+90837336 MsG0480023881.01.T01:CDS
TTTAATTAGTATAGTACTAA+TGG 0.357285 4:+90837754 MsG0480023881.01.T01:three_prime_UTR
TATGATTAAGTAGCTTAGTT+AGG 0.358015 4:-90838017 None:intergenic
GGTTACCTAGTTGGTTATTC+CGG 0.370409 4:+90837887 MsG0480023881.01.T01:three_prime_UTR
AAATGAAATGTTAAAGGTTA+AGG 0.373350 4:+90836744 MsG0480023881.01.T01:CDS
TCTTCATCACCTCCGAGTTC+AGG 0.373850 4:-90836423 None:intergenic
TTCAATCTATCTCTAGCTTC+AGG 0.383752 4:+90837731 MsG0480023881.01.T01:three_prime_UTR
TCATGTCAGTGGTAATTAGT+TGG 0.390665 4:-90837554 None:intergenic
TGGTTAATTGGTTACCTAGT+TGG 0.403469 4:+90837878 MsG0480023881.01.T01:three_prime_UTR
CTTCCACTTGTTCCTGAACT+CGG 0.406110 4:+90836411 MsG0480023881.01.T01:CDS
AGGGTTCAAGTGGGTGTAGA+TGG 0.410632 4:+90837317 MsG0480023881.01.T01:intron
TGGAGAAGTAAGAAGCTTAA+GGG 0.411931 4:+90837337 MsG0480023881.01.T01:CDS
TTGAATGTGAACTTCTTGTA+AGG 0.415816 4:-90837840 None:intergenic
TCAATTGTGATGATGATTCA+TGG 0.426751 4:+90837038 MsG0480023881.01.T01:CDS
TTTACTAGAGTTAATTGCTT+GGG 0.426932 4:+90837704 MsG0480023881.01.T01:three_prime_UTR
CCTTAGCAGACGCGGTTTGA+AGG 0.445349 4:-90836257 None:intergenic
AGAAGATAAGATATGAAGTA+AGG 0.448594 4:+90837447 MsG0480023881.01.T01:CDS
ATCAACTAGCTCATAATTGA+AGG 0.456236 4:-90837781 None:intergenic
TGATGCAGATGCAGGTGCCT+TGG 0.467044 4:+90836091 None:intergenic
CCTTCAAACCGCGTCTGCTA+AGG 0.473927 4:+90836257 MsG0480023881.01.T01:CDS
ACATGAAGAATATCATCAAC+TGG 0.480535 4:+90837571 MsG0480023881.01.T01:exon
GTTGAAAGTTTACTTGGTGT+TGG 0.483990 4:+90836643 MsG0480023881.01.T01:CDS
ACCTAGTTGGTTATTCCGGC+AGG 0.486903 4:+90837891 MsG0480023881.01.T01:three_prime_UTR
TTAATGGGAAGTGGTGGAGA+TGG 0.488245 4:+90837365 MsG0480023881.01.T01:CDS
GAGATTCGAGAGAATTCATC+AGG 0.489115 4:+90836676 MsG0480023881.01.T01:CDS
TTATAAACAAGAGAATGAAA+TGG 0.496628 4:+90836711 MsG0480023881.01.T01:CDS
TCATCACAATTGAACTTAGG+AGG 0.497589 4:-90837028 None:intergenic
TTGAAAGTTTACTTGGTGTT+GGG 0.498767 4:+90836644 MsG0480023881.01.T01:CDS
TGCTCTTGCTGTCGGCCCCA+AGG 0.508896 4:-90836108 None:intergenic
GCTAATGTTGAAAGTTTACT+TGG 0.513191 4:+90836637 MsG0480023881.01.T01:CDS
GGAGGGTTTGCAGTAGTCCA+TGG 0.516903 4:-90837010 None:intergenic
ATGGGAAGTGGTGGAGATGG+AGG 0.526179 4:+90837368 MsG0480023881.01.T01:CDS
GATGATGCTTTCCTTTGTCA+TGG 0.527738 4:+90836177 MsG0480023881.01.T01:CDS
GATTAAGTAGCTTAGTTAGG+AGG 0.529023 4:-90838014 None:intergenic
GGAGAAGTAAGAAGCTTAAG+GGG 0.532873 4:+90837338 MsG0480023881.01.T01:CDS
ATTAGCAAGTAGACACGAAA+GGG 0.537189 4:+90836230 MsG0480023881.01.T01:CDS
TCATCATCACAATTGAACTT+AGG 0.539550 4:-90837031 None:intergenic
CATCACAATTGAACTTAGGA+GGG 0.544271 4:-90837027 None:intergenic
TGATTAATATTTGGTGCATG+TGG 0.544592 4:+90837636 MsG0480023881.01.T01:three_prime_UTR
CTTTACTAGAGTTAATTGCT+TGG 0.546275 4:+90837703 MsG0480023881.01.T01:three_prime_UTR
TTAGAAGAAGAGCACGTTGG+TGG 0.551022 4:+90836142 MsG0480023881.01.T01:CDS
GAAGAGAAGCAAGAGTATCA+AGG 0.553110 4:+90837390 MsG0480023881.01.T01:CDS
TATTGATTTCAGGGTTCAAG+TGG 0.553944 4:+90837307 MsG0480023881.01.T01:intron
GAAAAGAGACCAAGAATGAA+AGG 0.557120 4:+90837482 MsG0480023881.01.T01:CDS
GGCAAGGTTCTCCTTCTCCA+TGG 0.557589 4:+90836993 MsG0480023881.01.T01:intron
ATGAAAGGTGATGCAGATGC+AGG 0.575851 4:+90836083 None:intergenic
ACAACAACAGCAACGTCTCA+AGG 0.580637 4:+90836362 MsG0480023881.01.T01:CDS
ATAGTTCATTAGTAGCCTGC+CGG 0.594378 4:-90837906 None:intergenic
CTATCACATGCTCTTGCTGT+CGG 0.594804 4:-90836116 None:intergenic
CAATTATGAGCTAGTTGATG+TGG 0.594949 4:+90837785 MsG0480023881.01.T01:three_prime_UTR
GGGCAATTAATGGGAAGTGG+TGG 0.598711 4:+90837359 MsG0480023881.01.T01:CDS
AGTTTGCAGAAAAGCAAACA+TGG 0.598896 4:-90837608 None:intergenic
GATGATATTCTTCATGTCAG+TGG 0.605262 4:-90837565 None:intergenic
CCTCCGAGTTCAGGAACAAG+TGG 0.605265 4:-90836414 None:intergenic
TATTAGCAAGTAGACACGAA+AGG 0.608632 4:+90836229 MsG0480023881.01.T01:CDS
TTTGCAGTAGTCCATGGAGA+AGG 0.610228 4:-90837004 None:intergenic
TAACAACAACAGCACAAGCA+TGG 0.618954 4:+90836280 MsG0480023881.01.T01:CDS
TGATATTGATGAGGCTGATG+AGG 0.627860 4:+90836467 MsG0480023881.01.T01:CDS
ACTACTTGTTGATATTGATG+AGG 0.630146 4:+90836458 MsG0480023881.01.T01:CDS
AATTGTCACAACCATGACAA+AGG 0.630486 4:-90836188 None:intergenic
AGTGTATACACTTCAACTAG+TGG 0.636434 4:+90837990 MsG0480023881.01.T01:three_prime_UTR
TCAACTAGCTCATAATTGAA+GGG 0.636673 4:-90837780 None:intergenic
TGTTGTTACCTTAGCAGACG+CGG 0.639555 4:-90836265 None:intergenic
ATGCAGATGCAGGTGCCTTG+GGG 0.643136 4:+90836093 MsG0480023881.01.T01:CDS
CATGGCACAGTGGATTCACA+AGG 0.649315 4:+90836298 MsG0480023881.01.T01:CDS
ATTGATTTCAGGGTTCAAGT+GGG 0.657095 4:+90837308 MsG0480023881.01.T01:intron
GCCTGCCGGAATAACCAACT+AGG 0.660660 4:-90837892 None:intergenic
CTCGGAGGTGATGAAGAACA+AGG 0.666390 4:+90836429 MsG0480023881.01.T01:CDS
CCACTTGTTCCTGAACTCGG+AGG 0.668175 4:+90836414 MsG0480023881.01.T01:CDS
TGTTTAGAAGAAGAGCACGT+TGG 0.671623 4:+90836139 MsG0480023881.01.T01:CDS
GAGAAGTAAGAAGCTTAAGG+GGG 0.726133 4:+90837339 MsG0480023881.01.T01:CDS
ACAGCACAAGCATGGCACAG+TGG 0.751381 4:+90836288 MsG0480023881.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAATTAGTATAGTACTAA+TGG + Chr4:90837754-90837773 MsG0480023881.01.T01:three_prime_UTR 15.0%
!!! ATATTTTATTTTAAACGACA+AGG + Chr4:90837169-90837188 MsG0480023881.01.T01:intron 15.0%
!!! TATTTTATTTTAAACGACAA+GGG + Chr4:90837170-90837189 MsG0480023881.01.T01:intron 15.0%
!! AAATGAAATGTTAAAGGTTA+AGG + Chr4:90836744-90836763 MsG0480023881.01.T01:CDS 20.0%
!! AACTTGGATTGATTAATATT+TGG + Chr4:90837627-90837646 MsG0480023881.01.T01:three_prime_UTR 20.0%
!! ATCCAAAAATGAAATGTTAA+AGG + Chr4:90836738-90836757 MsG0480023881.01.T01:CDS 20.0%
!! TTATAAACAAGAGAATGAAA+TGG + Chr4:90836711-90836730 MsG0480023881.01.T01:CDS 20.0%
!! TTCAAATGTTGATGTTTATA+TGG + Chr4:90837858-90837877 MsG0480023881.01.T01:three_prime_UTR 20.0%
!! TTGATGTTTATATGGTTAAT+TGG + Chr4:90837866-90837885 MsG0480023881.01.T01:three_prime_UTR 20.0%
!! TTGTAAGGAACAATAATAAT+AGG - Chr4:90837828-90837847 None:intergenic 20.0%
!!! AACCTTTAACATTTCATTTT+TGG - Chr4:90836743-90836762 None:intergenic 20.0%
!!! TTTTGTGAATATTGATTTCA+GGG + Chr4:90837298-90837317 MsG0480023881.01.T01:intron 20.0%
! AGAAGATAAGATATGAAGTA+AGG + Chr4:90837447-90837466 MsG0480023881.01.T01:CDS 25.0%
! TATGATTAAGTAGCTTAGTT+AGG - Chr4:90838020-90838039 None:intergenic 25.0%
! TTTACTAGAGTTAATTGCTT+GGG + Chr4:90837704-90837723 MsG0480023881.01.T01:three_prime_UTR 25.0%
!!! GTTTTGTGAATATTGATTTC+AGG + Chr4:90837297-90837316 MsG0480023881.01.T01:intron 25.0%
ACATGAAGAATATCATCAAC+TGG + Chr4:90837571-90837590 MsG0480023881.01.T01:exon 30.0%
ATCAACTAGCTCATAATTGA+AGG - Chr4:90837784-90837803 None:intergenic 30.0%
ATGAAGAGGTTATTACTGAA+TGG + Chr4:90836966-90836985 MsG0480023881.01.T01:intron 30.0%
ATGATTCATGGCAAAACTTA+TGG + Chr4:90837050-90837069 MsG0480023881.01.T01:CDS 30.0%
CTTTACTAGAGTTAATTGCT+TGG + Chr4:90837703-90837722 MsG0480023881.01.T01:three_prime_UTR 30.0%
GCTAATGTTGAAAGTTTACT+TGG + Chr4:90836637-90836656 MsG0480023881.01.T01:CDS 30.0%
TACAAGTCTCTAAATCGAAA+GGG - Chr4:90836532-90836551 None:intergenic 30.0%
TCAACTAGCTCATAATTGAA+GGG - Chr4:90837783-90837802 None:intergenic 30.0%
TCATCATCACAATTGAACTT+AGG - Chr4:90837034-90837053 None:intergenic 30.0%
TTCAGTGATAAACAAGTAAG+TGG - Chr4:90837233-90837252 None:intergenic 30.0%
TTGAATGTGAACTTCTTGTA+AGG - Chr4:90837843-90837862 None:intergenic 30.0%
! ACTACTTGTTGATATTGATG+AGG + Chr4:90836458-90836477 MsG0480023881.01.T01:CDS 30.0%
! TCAATTGTGATGATGATTCA+TGG + Chr4:90837038-90837057 MsG0480023881.01.T01:CDS 30.0%
! TTTGAGACTAAACTATGAAG+AGG + Chr4:90836952-90836971 MsG0480023881.01.T01:intron 30.0%
!! TGATTAATATTTGGTGCATG+TGG + Chr4:90837636-90837655 MsG0480023881.01.T01:three_prime_UTR 30.0%
!! TTGAAAGTTTACTTGGTGTT+GGG + Chr4:90836644-90836663 MsG0480023881.01.T01:CDS 30.0%
!!! AAATGATGCTGTTGATTTTG+AGG + Chr4:90836558-90836577 MsG0480023881.01.T01:intron 30.0%
AATTGTCACAACCATGACAA+AGG - Chr4:90836191-90836210 None:intergenic 35.0%
ACAAAACGTCCTTTCATTCT+TGG - Chr4:90837494-90837513 None:intergenic 35.0%
AGTGTATACACTTCAACTAG+TGG + Chr4:90837990-90838009 MsG0480023881.01.T01:three_prime_UTR 35.0%
AGTTTGCAGAAAAGCAAACA+TGG - Chr4:90837611-90837630 None:intergenic 35.0%
ATGGAGAAGTAAGAAGCTTA+AGG + Chr4:90837336-90837355 MsG0480023881.01.T01:CDS 35.0%
ATTAGCAAGTAGACACGAAA+GGG + Chr4:90836230-90836249 MsG0480023881.01.T01:CDS 35.0%
CATCACAATTGAACTTAGGA+GGG - Chr4:90837030-90837049 None:intergenic 35.0%
CCAACACTACTATTACTGAA+AGG - Chr4:90836885-90836904 None:intergenic 35.0%
CCTTTCAGTAATAGTAGTGT+TGG + Chr4:90836882-90836901 MsG0480023881.01.T01:intron 35.0%
GAAAAGAGACCAAGAATGAA+AGG + Chr4:90837482-90837501 MsG0480023881.01.T01:CDS 35.0%
GATGATATTCTTCATGTCAG+TGG - Chr4:90837568-90837587 None:intergenic 35.0%
GATTAAGTAGCTTAGTTAGG+AGG - Chr4:90838017-90838036 None:intergenic 35.0%
GTACAAGTCTCTAAATCGAA+AGG - Chr4:90836533-90836552 None:intergenic 35.0%
TATTAGCAAGTAGACACGAA+AGG + Chr4:90836229-90836248 MsG0480023881.01.T01:CDS 35.0%
TCATCACAATTGAACTTAGG+AGG - Chr4:90837031-90837050 None:intergenic 35.0%
TCATGTCAGTGGTAATTAGT+TGG - Chr4:90837557-90837576 None:intergenic 35.0%
TGGAGAAGTAAGAAGCTTAA+GGG + Chr4:90837337-90837356 MsG0480023881.01.T01:CDS 35.0%
TGGTTAATTGGTTACCTAGT+TGG + Chr4:90837878-90837897 MsG0480023881.01.T01:three_prime_UTR 35.0%
TTGTCATGGTTGTGACAATT+TGG + Chr4:90836191-90836210 MsG0480023881.01.T01:CDS 35.0%
! ATTGATTTCAGGGTTCAAGT+GGG + Chr4:90837308-90837327 MsG0480023881.01.T01:intron 35.0%
! CAATTATGAGCTAGTTGATG+TGG + Chr4:90837785-90837804 MsG0480023881.01.T01:three_prime_UTR 35.0%
! TTCAATCTATCTCTAGCTTC+AGG + Chr4:90837731-90837750 MsG0480023881.01.T01:three_prime_UTR 35.0%
!! GTTGAAAGTTTACTTGGTGT+TGG + Chr4:90836643-90836662 MsG0480023881.01.T01:CDS 35.0%
!! TATTGATTTCAGGGTTCAAG+TGG + Chr4:90837307-90837326 MsG0480023881.01.T01:intron 35.0%
!! TCGACGAATTTTTGTTGTGA+CGG - Chr4:90836338-90836357 None:intergenic 35.0%
!! TGAAAGGACGTTTTGTTAAG+AGG + Chr4:90837498-90837517 MsG0480023881.01.T01:CDS 35.0%
!! TGTTTGCTTTTCTGCAAACT+TGG + Chr4:90837611-90837630 MsG0480023881.01.T01:three_prime_UTR 35.0%
!! TTTTGAGGAAATGTGTGACT+TGG + Chr4:90836573-90836592 MsG0480023881.01.T01:intron 35.0%
!!! GTGATGAGAGTGTTTTTCAT+TGG + Chr4:90836809-90836828 MsG0480023881.01.T01:CDS 35.0%
AAGCTTAAGGGGGCAATTAA+TGG + Chr4:90837349-90837368 MsG0480023881.01.T01:CDS 40.0%
AGCTTAAGGGGGCAATTAAT+GGG + Chr4:90837350-90837369 MsG0480023881.01.T01:CDS 40.0%
AGGTTATTACTGAATGGAGC+AGG + Chr4:90836972-90836991 MsG0480023881.01.T01:intron 40.0%
ATAGTTCATTAGTAGCCTGC+CGG - Chr4:90837909-90837928 None:intergenic 40.0%
GAGAAGTAAGAAGCTTAAGG+GGG + Chr4:90837339-90837358 MsG0480023881.01.T01:CDS 40.0%
GAGATTCGAGAGAATTCATC+AGG + Chr4:90836676-90836695 MsG0480023881.01.T01:CDS 40.0%
GATGATGCTTTCCTTTGTCA+TGG + Chr4:90836177-90836196 MsG0480023881.01.T01:CDS 40.0%
GGAGAAGTAAGAAGCTTAAG+GGG + Chr4:90837338-90837357 MsG0480023881.01.T01:CDS 40.0%
GGTTACCTAGTTGGTTATTC+CGG + Chr4:90837887-90837906 MsG0480023881.01.T01:three_prime_UTR 40.0%
TAACAACAACAGCACAAGCA+TGG + Chr4:90836280-90836299 MsG0480023881.01.T01:CDS 40.0%
TGATATTGATGAGGCTGATG+AGG + Chr4:90836467-90836486 MsG0480023881.01.T01:CDS 40.0%
! TGTTTAGAAGAAGAGCACGT+TGG + Chr4:90836139-90836158 MsG0480023881.01.T01:CDS 40.0%
!! CGACGAATTTTTGTTGTGAC+GGG - Chr4:90836337-90836356 None:intergenic 40.0%
!! GAAGAGAAGCAAGAGTATCA+AGG + Chr4:90837390-90837409 MsG0480023881.01.T01:CDS 40.0%
!! GACGAATTTTTGTTGTGACG+GGG - Chr4:90836336-90836355 None:intergenic 40.0%
AAAGGGCTGACATCGAAAAC+TGG - Chr4:90836515-90836534 None:intergenic 45.0%
ACAACAACAGCAACGTCTCA+AGG + Chr4:90836362-90836381 MsG0480023881.01.T01:CDS 45.0%
ATTACTGAATGGAGCAGGCA+AGG + Chr4:90836977-90836996 MsG0480023881.01.T01:intron 45.0%
CTTCCACTTGTTCCTGAACT+CGG + Chr4:90836411-90836430 MsG0480023881.01.T01:CDS 45.0%
GGTTGAATCTCAGTAGATCG+TGG + Chr4:90837191-90837210 MsG0480023881.01.T01:intron 45.0%
TGTTGTTACCTTAGCAGACG+CGG - Chr4:90836268-90836287 None:intergenic 45.0%
TTTGCAGTAGTCCATGGAGA+AGG - Chr4:90837007-90837026 None:intergenic 45.0%
! AAGAGGACAGCATGTTTTGC+TGG + Chr4:90837515-90837534 MsG0480023881.01.T01:CDS 45.0%
! CTATCACATGCTCTTGCTGT+CGG - Chr4:90836119-90836138 None:intergenic 45.0%
! TTAATGGGAAGTGGTGGAGA+TGG + Chr4:90837365-90837384 MsG0480023881.01.T01:CDS 45.0%
! TTAGAAGAAGAGCACGTTGG+TGG + Chr4:90836142-90836161 MsG0480023881.01.T01:CDS 45.0%
ACCTAGTTGGTTATTCCGGC+AGG + Chr4:90837891-90837910 MsG0480023881.01.T01:three_prime_UTR 50.0%
AGGGGGCAATTAATGGGAAG+TGG + Chr4:90837356-90837375 MsG0480023881.01.T01:CDS 50.0%
AGGGTTCAAGTGGGTGTAGA+TGG + Chr4:90837317-90837336 MsG0480023881.01.T01:intron 50.0%
CTCGGAGGTGATGAAGAACA+AGG + Chr4:90836429-90836448 MsG0480023881.01.T01:CDS 50.0%
GGGCAATTAATGGGAAGTGG+TGG + Chr4:90837359-90837378 MsG0480023881.01.T01:CDS 50.0%
TCTTCATCACCTCCGAGTTC+AGG - Chr4:90836426-90836445 None:intergenic 50.0%
! AGGACAGCATGTTTTGCTGG+AGG + Chr4:90837518-90837537 MsG0480023881.01.T01:CDS 50.0%
! CATGGCACAGTGGATTCACA+AGG + Chr4:90836298-90836317 MsG0480023881.01.T01:CDS 50.0%
ACAGCACAAGCATGGCACAG+TGG + Chr4:90836288-90836307 MsG0480023881.01.T01:CDS 55.0%
ATGCAGATGCAGGTGCCTTG+GGG + Chr4:90836093-90836112 MsG0480023881.01.T01:CDS 55.0%
CCACTTGTTCCTGAACTCGG+AGG + Chr4:90836414-90836433 MsG0480023881.01.T01:CDS 55.0%
CCTCCGAGTTCAGGAACAAG+TGG - Chr4:90836417-90836436 None:intergenic 55.0%
CCTTAGCAGACGCGGTTTGA+AGG - Chr4:90836260-90836279 None:intergenic 55.0%
CCTTCAAACCGCGTCTGCTA+AGG + Chr4:90836257-90836276 MsG0480023881.01.T01:CDS 55.0%
GCCTGCCGGAATAACCAACT+AGG - Chr4:90837895-90837914 None:intergenic 55.0%
GGAGGGTTTGCAGTAGTCCA+TGG - Chr4:90837013-90837032 None:intergenic 55.0%
GGCAAGGTTCTCCTTCTCCA+TGG + Chr4:90836993-90837012 MsG0480023881.01.T01:intron 55.0%
! ATGGGAAGTGGTGGAGATGG+AGG + Chr4:90837368-90837387 MsG0480023881.01.T01:CDS 55.0%
! TGCTCTTGCTGTCGGCCCCA+AGG - Chr4:90836111-90836130 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 90836093 90838048 90836093 ID=MsG0480023881.01;Name=MsG0480023881.01
Chr4 mRNA 90836093 90838048 90836093 ID=MsG0480023881.01.T01;Parent=MsG0480023881.01;Name=MsG0480023881.01.T01;_AED=0.48;_eAED=0.48;_QI=0|0.33|0.25|1|1|1|4|477|328
Chr4 exon 90836093 90836499 90836093 ID=MsG0480023881.01.T01:exon:7873;Parent=MsG0480023881.01.T01
Chr4 exon 90836600 90836848 90836600 ID=MsG0480023881.01.T01:exon:7874;Parent=MsG0480023881.01.T01
Chr4 exon 90836994 90837071 90836994 ID=MsG0480023881.01.T01:exon:7875;Parent=MsG0480023881.01.T01
Chr4 exon 90837319 90838048 90837319 ID=MsG0480023881.01.T01:exon:7876;Parent=MsG0480023881.01.T01
Chr4 CDS 90836093 90836499 90836093 ID=MsG0480023881.01.T01:cds;Parent=MsG0480023881.01.T01
Chr4 CDS 90836600 90836848 90836600 ID=MsG0480023881.01.T01:cds;Parent=MsG0480023881.01.T01
Chr4 CDS 90836994 90837071 90836994 ID=MsG0480023881.01.T01:cds;Parent=MsG0480023881.01.T01
Chr4 CDS 90837319 90837571 90837319 ID=MsG0480023881.01.T01:cds;Parent=MsG0480023881.01.T01
Chr4 three_prime_UTR 90837572 90838048 90837572 ID=MsG0480023881.01.T01:three_prime_utr;Parent=MsG0480023881.01.T01
Gene Sequence

>MsG0480023881.01.T01

ATGCAGATGCAGGTGCCTTGGGGCCGACAGCAAGAGCATGTGATAGTGTTTAGAAGAAGAGCACGTTGGTGGTTTTGTGCTGCAGATGATGCTTTCCTTTGTCATGGTTGTGACAATTTGGTTCACTCTGCAAATCTATTAGCAAGTAGACACGAAAGGGTTCGCCTTCAAACCGCGTCTGCTAAGGTAACAACAACAGCACAAGCATGGCACAGTGGATTCACAAGGAAAGCAAGAACGCCCCGTCACAACAAAAATTCGTCGATTCAACAACAACAGCAACGTCTCAAGGAAAAAGTTCTTTTCAATACTAGTTTTCTTCCACTTGTTCCTGAACTCGGAGGTGATGAAGAACAAGGACAAGAACTACTTGTTGATATTGATGAGGCTGATGAGGAGCAGTTGCTTTTCTGTGAGTTTGATGTTGATCTTGCTGAATTTGCAGCTAATGTTGAAAGTTTACTTGGTGTTGGGAGTAGTAGTGAGATTCGAGAGAATTCATCAGGACAAGTGTTTGATTATAAACAAGAGAATGAAATGGATGCATCCAAAAATGAAATGTTAAAGGTTAAGGATGAAGAACTTGATGATTTAGAATCAGTTTTTGACATGACAAGTGATGAGAGTGTTTTTCATTGGAATATTGATCATATCATGCAAGGTTCTCCTTCTCCATGGACTACTGCAAACCCTCCTAAGTTCAATTGTGATGATGATTCATGGCAAAACTTATGGGTTCAAGTGGGTGTAGATGGAGAAGTAAGAAGCTTAAGGGGGCAATTAATGGGAAGTGGTGGAGATGGAGGAAGAGAAGCAAGAGTATCAAGGTACAGAGAGAAAAGAAGAACACGTTTATTTGCAAAGAAGATAAGATATGAAGTAAGGAAATTGAATGCAGAAAAGAGACCAAGAATGAAAGGACGTTTTGTTAAGAGGACAGCATGTTTTGCTGGAGGAGCTACTTCTTTTCCAACTAATTACCACTGA

Protein sequence

>MsG0480023881.01.T01

MQMQVPWGRQQEHVIVFRRRARWWFCAADDAFLCHGCDNLVHSANLLASRHERVRLQTASAKVTTTAQAWHSGFTRKARTPRHNKNSSIQQQQQRLKEKVLFNTSFLPLVPELGGDEEQGQELLVDIDEADEEQLLFCEFDVDLAEFAANVESLLGVGSSSEIRENSSGQVFDYKQENEMDASKNEMLKVKDEELDDLESVFDMTSDESVFHWNIDHIMQGSPSPWTTANPPKFNCDDDSWQNLWVQVGVDGEVRSLRGQLMGSGGDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTACFAGGATSFPTNYH*