Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080049080.01.T01 | YP_009127432.1 | 84.314 | 153 | 19 | 2 | 1 | 149 | 1 | 152 | 1.40E-79 | 244 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080049080.01.T01 | Q9BBT5 | 82.353 | 153 | 22 | 2 | 1 | 149 | 1 | 152 | 1.21E-80 | 240 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080049080.01.T01 | A0A1C7D2Z3 | 84.314 | 153 | 19 | 2 | 1 | 149 | 1 | 152 | 6.71e-80 | 244 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047910.01 | MsG0080049080.01 | 0.820509 | 6.606025e-53 | 5.237183e-50 |
| MsG0080047945.01 | MsG0080049080.01 | 0.806236 | 9.073397e-50 | 4.899735e-47 |
| MsG0080048689.01 | MsG0080049080.01 | 0.842921 | 1.924406e-58 | 2.961831e-55 |
| MsG0080049077.01 | MsG0080049080.01 | 0.801070 | 1.070835e-48 | 5.066898e-46 |
| MsG0080049078.01 | MsG0080049080.01 | 0.866706 | 2.343405e-65 | 7.974527e-62 |
| MsG0080049079.01 | MsG0080049080.01 | 0.854833 | 9.456145e-62 | 2.139739e-58 |
| MsG0080049080.01 | MsG0180000325.01 | 0.807503 | 4.897370e-50 | 2.732427e-47 |
| MsG0080049080.01 | MsG0180003198.01 | 0.802168 | 6.376994e-49 | 3.102358e-46 |
| MsG0080049080.01 | MsG0180003933.01 | 0.831620 | 1.505927e-55 | 1.643099e-52 |
| MsG0080049080.01 | MsG0180004302.01 | 0.800154 | 1.646070e-48 | 7.609371e-46 |
| MsG0080049080.01 | MsG0180004987.01 | 0.825923 | 3.597604e-54 | 3.324878e-51 |
| MsG0080049080.01 | MsG0180005879.01 | 0.826312 | 2.906559e-54 | 2.716095e-51 |
| MsG0080049080.01 | MsG0280007026.01 | 0.800467 | 1.421984e-48 | 6.625701e-46 |
| MsG0080049080.01 | MsG0280007041.01 | 0.860629 | 1.807719e-63 | 4.973723e-60 |
| MsG0080049080.01 | MsG0280007042.01 | 0.850526 | 1.604426e-60 | 3.151570e-57 |
| MsG0080049080.01 | MsG0280009751.01 | 0.807703 | 4.441602e-50 | 2.490945e-47 |
| MsG0080049080.01 | MsG0280009761.01 | 0.829100 | 6.218213e-55 | 6.301126e-52 |
| MsG0080049080.01 | MsG0280009863.01 | 0.833989 | 3.885122e-56 | 4.549140e-53 |
| MsG0080049080.01 | MsG0280011279.01 | 0.804027 | 2.630154e-49 | 1.341919e-46 |
| MsG0080049080.01 | MsG0380012443.01 | 0.801169 | 1.021894e-48 | 4.847287e-46 |
| MsG0080049080.01 | MsG0380013889.01 | 0.843519 | 1.333065e-58 | 2.091044e-55 |
| MsG0080049080.01 | MsG0380013918.01 | 0.832850 | 7.471861e-56 | 8.454407e-53 |
| MsG0080049080.01 | MsG0380013919.01 | 0.814232 | 1.711119e-51 | 1.141741e-48 |
| MsG0080049080.01 | MsG0380013927.01 | 0.858033 | 1.087503e-62 | 2.738059e-59 |
| MsG0080049080.01 | MsG0380013930.01 | 0.848238 | 6.960891e-60 | 1.269161e-56 |
| MsG0080049080.01 | MsG0380013932.01 | 0.807786 | 4.264244e-50 | 2.396709e-47 |
| MsG0080049080.01 | MsG0380013938.01 | 0.818826 | 1.600101e-52 | 1.210653e-49 |
| MsG0080049080.01 | MsG0380013939.01 | 0.823584 | 1.280563e-53 | 1.107175e-50 |
| MsG0080049080.01 | MsG0380013955.01 | 0.855978 | 4.389159e-62 | 1.031632e-58 |
| MsG0080049080.01 | MsG0380013958.01 | 0.869800 | 2.359731e-66 | 8.969833e-63 |
| MsG0080049080.01 | MsG0380013963.01 | 0.803931 | 2.754445e-49 | 1.401928e-46 |
| MsG0080049080.01 | MsG0380013964.01 | 0.835565 | 1.557986e-56 | 1.912376e-53 |
| MsG0080049080.01 | MsG0380013970.01 | 0.865360 | 6.249615e-65 | 2.027555e-61 |
| MsG0080049080.01 | MsG0380013976.01 | 0.804191 | 2.431987e-49 | 1.245956e-46 |
| MsG0080049080.01 | MsG0380013978.01 | 0.804500 | 2.096623e-49 | 1.082706e-46 |
| MsG0080049080.01 | MsG0380013979.01 | 0.883981 | 2.831409e-71 | 1.834904e-67 |
| MsG0080049080.01 | MsG0380013980.01 | 0.816106 | 6.560682e-52 | 4.606880e-49 |
| MsG0080049080.01 | MsG0380013981.01 | 0.800250 | 1.574176e-48 | 7.294841e-46 |
| MsG0080049080.01 | MsG0380013983.01 | 0.817506 | 3.183562e-52 | 2.322802e-49 |
| MsG0080049080.01 | MsG0380013992.01 | 0.847365 | 1.210775e-59 | 2.147043e-56 |
| MsG0080049080.01 | MsG0380013996.01 | 0.864097 | 1.553658e-64 | 4.820058e-61 |
| MsG0080049080.01 | MsG0380014000.01 | 0.816919 | 4.315142e-52 | 3.098105e-49 |
| MsG0080049080.01 | MsG0380014007.01 | 0.844385 | 7.813599e-59 | 1.259230e-55 |
| MsG0080049080.01 | MsG0380014009.01 | 0.818938 | 1.509524e-52 | 1.145795e-49 |
| MsG0080049080.01 | MsG0380014012.01 | 0.824476 | 7.908642e-54 | 7.012382e-51 |
| MsG0080049080.01 | MsG0380014013.01 | 0.826385 | 2.792637e-54 | 2.615163e-51 |
| MsG0080049080.01 | MsG0380014022.01 | 0.867213 | 1.615652e-65 | 5.595423e-62 |
| MsG0080049080.01 | MsG0380014028.01 | 0.807483 | 4.944709e-50 | 2.757391e-47 |
| MsG0080049080.01 | MsG0380014035.01 | 0.868105 | 8.356706e-66 | 2.987060e-62 |
| MsG0080049080.01 | MsG0380014037.01 | 0.867203 | 1.627026e-65 | 5.632775e-62 |
| MsG0080049080.01 | MsG0380014041.01 | 0.812416 | 4.286431e-51 | 2.723941e-48 |
| MsG0080049080.01 | MsG0380014042.01 | 0.826428 | 2.727075e-54 | 2.556899e-51 |
| MsG0080049080.01 | MsG0380014050.01 | 0.800870 | 1.176819e-48 | 5.540035e-46 |
| MsG0080049080.01 | MsG0380014053.01 | 0.860922 | 1.473088e-63 | 4.094319e-60 |
| MsG0080049080.01 | MsG0380014055.01 | 0.821902 | 3.154421e-53 | 2.600224e-50 |
| MsG0080049080.01 | MsG0380014056.01 | 0.808115 | 3.628308e-50 | 2.057071e-47 |
| MsG0080049080.01 | MsG0380014729.01 | 0.809130 | 2.203215e-50 | 1.283022e-47 |
| MsG0080049080.01 | MsG0380015496.01 | 0.803641 | 3.163879e-49 | 1.598236e-46 |
| MsG0080049080.01 | MsG0380015733.01 | 0.805584 | 1.243779e-49 | 6.605097e-47 |
| MsG0080049080.01 | MsG0380016751.01 | 0.829017 | 6.511960e-55 | 6.582385e-52 |
| MsG0080049080.01 | MsG0380016762.01 | 0.810217 | 1.286317e-50 | 7.708414e-48 |
| MsG0080049080.01 | MsG0380018027.01 | 0.800106 | 1.683931e-48 | 7.774983e-46 |
| MsG0080049080.01 | MsG0480018089.01 | 0.800491 | 1.405800e-48 | 6.554614e-46 |
| MsG0080049080.01 | MsG0480020049.01 | 0.808420 | 3.125304e-50 | 1.786140e-47 |
| MsG0080049080.01 | MsG0480020350.01 | 0.810969 | 8.848799e-51 | 5.410576e-48 |
| MsG0080049080.01 | MsG0480021303.01 | 0.823353 | 1.449703e-53 | 1.245154e-50 |
| MsG0080049080.01 | MsG0480021709.01 | 0.801675 | 8.051144e-49 | 3.867923e-46 |
| MsG0080049080.01 | MsG0480023371.01 | 0.809864 | 1.532769e-50 | 9.101442e-48 |
| MsG0080049080.01 | MsG0480023505.01 | 0.809721 | 1.644834e-50 | 9.730580e-48 |
| MsG0080049080.01 | MsG0480023881.01 | 0.822247 | 2.623892e-53 | 2.184253e-50 |
| MsG0080049080.01 | MsG0580024982.01 | 0.834655 | 2.643763e-56 | 3.157650e-53 |
| MsG0080049080.01 | MsG0580026430.01 | 0.842791 | 2.084341e-58 | 3.195043e-55 |
| MsG0080049080.01 | MsG0580027249.01 | 0.811674 | 6.220879e-51 | 3.874496e-48 |
| MsG0080049080.01 | MsG0580027254.01 | 0.822438 | 2.368502e-53 | 1.982503e-50 |
| MsG0080049080.01 | MsG0580027983.01 | 0.809903 | 1.503428e-50 | 8.936405e-48 |
| MsG0080049080.01 | MsG0580028853.01 | 0.808935 | 2.425546e-50 | 1.405012e-47 |
| MsG0080049080.01 | MsG0580029673.01 | 0.812224 | 4.720113e-51 | 2.984089e-48 |
| MsG0080049080.01 | MsG0680032055.01 | 0.823547 | 1.306059e-53 | 1.127988e-50 |
| MsG0080049080.01 | MsG0780037705.01 | 0.844510 | 7.229256e-59 | 1.169786e-55 |
| MsG0080049080.01 | MsG0780037915.01 | 0.805217 | 1.485256e-49 | 7.813199e-47 |
| MsG0080049080.01 | MsG0780039596.01 | 0.813441 | 2.555393e-51 | 1.669004e-48 |
| MsG0080049080.01 | MsG0780039707.01 | 0.851182 | 1.048385e-60 | 2.104550e-57 |
| MsG0080049080.01 | MsG0780039859.01 | 0.810853 | 9.375872e-51 | 5.714848e-48 |
| MsG0080049080.01 | MsG0780040314.01 | 0.830361 | 3.066780e-55 | 3.224007e-52 |
| MsG0080049080.01 | MsG0780040315.01 | 0.866817 | 2.160398e-65 | 7.380637e-62 |
| MsG0080049080.01 | MsG0780040316.01 | 0.828406 | 9.150044e-55 | 9.086788e-52 |
| MsG0080049080.01 | MsG0780040317.01 | 0.809443 | 1.887736e-50 | 1.108482e-47 |
| MsG0080049080.01 | MsG0880043541.01 | 0.863974 | 1.696794e-64 | 5.241018e-61 |
| MsG0080049080.01 | MsG0880044312.01 | 0.806375 | 8.479247e-50 | 4.594943e-47 |
| MsG0080049080.01 | MsG0880044314.01 | 0.831910 | 1.277192e-55 | 1.405651e-52 |
| MsG0080049080.01 | MsG0880044440.01 | 0.815415 | 9.354658e-52 | 6.445374e-49 |
| MsG0080049080.01 | MsG0880045252.01 | 0.800874 | 1.174228e-48 | 5.528578e-46 |
| MsG0080049080.01 | MsG0880045283.01 | 0.811815 | 5.798008e-51 | 3.624888e-48 |
| MsG0080049080.01 | MsG0880045412.01 | 0.838545 | 2.698985e-57 | 3.626776e-54 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080049080.01.T01 | MTR_4g051220 | 83.007 | 153 | 21 | 2 | 1 | 149 | 1 | 152 | 8.76e-82 | 240 |
| MsG0080049080.01.T01 | MTR_0002s0590 | 84.426 | 122 | 19 | 0 | 1 | 122 | 1 | 122 | 2.16e-66 | 206 |
| MsG0080049080.01.T01 | MTR_0477s0040 | 100.000 | 42 | 0 | 0 | 128 | 169 | 1 | 42 | 1.17e-23 | 88.6 |
| MsG0080049080.01.T01 | MTR_4g051213 | 100.000 | 42 | 0 | 0 | 128 | 169 | 1 | 42 | 1.17e-23 | 88.6 |
| MsG0080049080.01.T01 | MTR_1g041800 | 67.857 | 56 | 6 | 1 | 128 | 171 | 1 | 56 | 1.33e-17 | 72.8 |
| MsG0080049080.01.T01 | MTR_8g102790 | 91.892 | 37 | 3 | 0 | 128 | 164 | 1 | 37 | 2.05e-17 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080049080.01.T01 | ATCG00380 | 93.443 | 122 | 8 | 0 | 1 | 122 | 1 | 122 | 6.32e-77 | 228 |
Find 23 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAATAATTCCGACAACTTC+TGG | 0.195705 | contig65end:-10180 | MsG0080049080.01.T01:CDS |
| ATGACTAGATCTCGGATAAA+TGG | 0.278088 | contig65end:-10249 | MsG0080049080.01.T01:CDS |
| AATTATTCGTAATAAGATAT+TGG | 0.314059 | contig65end:+10194 | None:intergenic |
| CTTAAATACGTTCGTATCGC+TGG | 0.342652 | contig65end:-11215 | MsG0080049080.01.T01:CDS |
| ACAATTACTTGAAATGCGTT+TGG | 0.359489 | contig65end:-11159 | MsG0080049080.01.T01:CDS |
| TACCAGGACTAACTAGTAAA+CGG | 0.463029 | contig65end:-11358 | MsG0080049080.01.T01:CDS |
| TTTATCCGAGATCTAGTCAT+AGG | 0.463215 | contig65end:+10252 | None:intergenic |
| GTCTGTGGTTAACTAATTGA+CGG | 0.477609 | contig65end:+11090 | None:intergenic |
| CTAAGTTCGCTTCCAACTGT+AGG | 0.508663 | contig65end:+11335 | None:intergenic |
| GATATTGGCTACAATGGTAA+AGG | 0.509030 | contig65end:+10209 | None:intergenic |
| GGAAAAGCGAAAGGTTCAAC+CGG | 0.516182 | contig65end:-11194 | MsG0080049080.01.T01:CDS |
| TCTGTGGTTAACTAATTGAC+GGG | 0.521261 | contig65end:+11091 | None:intergenic |
| GGCCGTTTACTAGTTAGTCC+TGG | 0.527000 | contig65end:+11356 | None:intergenic |
| TAATAAGATATTGGCTACAA+TGG | 0.565840 | contig65end:+10203 | None:intergenic |
| TAATTGTAGTAAAACTTGAC+CGG | 0.568250 | contig65end:+11175 | None:intergenic |
| ACTAGTAAACGGCCTACAGT+TGG | 0.568372 | contig65end:-11347 | MsG0080049080.01.T01:CDS |
| TGCTACCTATGACTAGATCT+CGG | 0.572595 | contig65end:-10257 | MsG0080049080.01.T01:CDS |
| GCATTCACTTATTACAGAGA+TGG | 0.579208 | contig65end:-10147 | MsG0080049080.01.T01:CDS |
| TTAACTAATTGACGGGCTTG+AGG | 0.581554 | contig65end:+11098 | None:intergenic |
| TGTTTATGTCACGTTACAGA+GGG | 0.632465 | contig65end:-11415 | None:intergenic |
| GTGTTTATGTCACGTTACAG+AGG | 0.633128 | contig65end:-11416 | None:intergenic |
| CGTATCGCTGGAAAAGCGAA+AGG | 0.633501 | contig65end:-11203 | MsG0080049080.01.T01:CDS |
| CATTAACTAAAACATGTCTG+TGG | 0.663264 | contig65end:+11075 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATCAAATAATTTTATCTTA+CGG | + | contig65end:11162-11181 | None:intergenic | 10.0% |
| !! | AATTATTCGTAATAAGATAT+TGG | + | contig65end:11356-11375 | None:intergenic | 15.0% |
| !! | ATCAAATAATAGATAGTAAA+TGG | - | contig65end:10662-10681 | MsG0080049080.01.T01:intron | 15.0% |
| !! | TCAAATAATAGATAGTAAAT+GGG | - | contig65end:10663-10682 | MsG0080049080.01.T01:intron | 15.0% |
| !!! | TAAACAATGAAATTTTAGAA+TGG | - | contig65end:11265-11284 | MsG0080049080.01.T01:CDS | 15.0% |
| !! | GTTTATTACAGAAAGAAATT+AGG | - | contig65end:10856-10875 | MsG0080049080.01.T01:intron | 20.0% |
| !! | TTCTGTAATAAACAAAATAG+TGG | + | contig65end:10849-10868 | None:intergenic | 20.0% |
| !! | TTTGAAAATTAATGAATTGC+TGG | - | contig65end:10690-10709 | MsG0080049080.01.T01:intron | 20.0% |
| ! | AACATTGATGAACTTGATAA+GGG | - | contig65end:10939-10958 | MsG0080049080.01.T01:intron | 25.0% |
| ! | ACTAATCCTTTATATTGGAA+TGG | + | contig65end:10640-10659 | None:intergenic | 25.0% |
| ! | AGTACGAAATAACGTAAAAA+TGG | + | contig65end:11201-11220 | None:intergenic | 25.0% |
| ! | ATAATAGATAGTAAATGGGT+TGG | - | contig65end:10667-10686 | MsG0080049080.01.T01:intron | 25.0% |
| ! | GATTGACTAATCCTTTATAT+TGG | + | contig65end:10645-10664 | None:intergenic | 25.0% |
| ! | TAACATTGATGAACTTGATA+AGG | - | contig65end:10938-10957 | MsG0080049080.01.T01:intron | 25.0% |
| ! | TAATTGTAGTAAAACTTGAC+CGG | + | contig65end:10375-10394 | None:intergenic | 25.0% |
| ! | TATTGTACAATTCCTTTGTT+TGG | - | contig65end:11222-11241 | MsG0080049080.01.T01:CDS | 25.0% |
| !! | AAATAATTTTATCTTACGGC+AGG | + | contig65end:11158-11177 | None:intergenic | 25.0% |
| !! | AACAAAATAGTGGAATAAAG+TGG | + | contig65end:10839-10858 | None:intergenic | 25.0% |
| !! | ACAAAATAGTGGAATAAAGT+GGG | + | contig65end:10838-10857 | None:intergenic | 25.0% |
| !! | ATTGTACAATTCCTTTGTTT+GGG | - | contig65end:11223-11242 | MsG0080049080.01.T01:CDS | 25.0% |
| !! | CAAAAATTGCGTTTTCATTA+TGG | - | contig65end:10290-10309 | MsG0080049080.01.T01:intron | 25.0% |
| !! | TAATAAGATATTGGCTACAA+TGG | + | contig65end:11347-11366 | None:intergenic | 25.0% |
| !!! | GATAACATACTTTTTCGATT+GGG | - | contig65end:10410-10429 | MsG0080049080.01.T01:intron | 25.0% |
| !!! | TTAAGAATAATTTTGATCCG+AGG | - | contig65end:10761-10780 | MsG0080049080.01.T01:intron | 25.0% |
| ACAATTACTTGAAATGCGTT+TGG | - | contig65end:10388-10407 | MsG0080049080.01.T01:intron | 30.0% | |
| AGCAAAAAAAACTTACTTCG+AGG | - | contig65end:11132-11151 | MsG0080049080.01.T01:CDS | 30.0% | |
| CAAGATATTATTACAGCGAA+GGG | - | contig65end:10533-10552 | MsG0080049080.01.T01:intron | 30.0% | |
| CATTAACTAAAACATGTCTG+TGG | + | contig65end:10475-10494 | None:intergenic | 30.0% | |
| CTTGATCCATTCCAATATAA+AGG | - | contig65end:10631-10650 | MsG0080049080.01.T01:intron | 30.0% | |
| TAATCATTATGTAGGAGAGA+TGG | + | contig65end:11045-11064 | None:intergenic | 30.0% | |
| TCAAGATATTATTACAGCGA+AGG | - | contig65end:10532-10551 | MsG0080049080.01.T01:intron | 30.0% | |
| TCATTATTCCAACTTTGATG+TGG | + | contig65end:10892-10911 | None:intergenic | 30.0% | |
| TTCAAAAAAATACGTCGTCT+GGG | - | contig65end:10161-10180 | MsG0080049080.01.T01:CDS | 30.0% | |
| TTCGCTGTAATAATATCTTG+AGG | + | contig65end:10533-10552 | None:intergenic | 30.0% | |
| TTTCAAAAAAATACGTCGTC+TGG | - | contig65end:10160-10179 | MsG0080049080.01.T01:CDS | 30.0% | |
| ! | TTGTACAATTCCTTTGTTTG+GGG | - | contig65end:11224-11243 | MsG0080049080.01.T01:CDS | 30.0% |
| !!! | CACAGACATGTTTTAGTTAA+TGG | - | contig65end:10473-10492 | MsG0080049080.01.T01:intron | 30.0% |
| !!! | GGATAACATACTTTTTCGAT+TGG | - | contig65end:10409-10428 | MsG0080049080.01.T01:intron | 30.0% |
| ATGACTAGATCTCGGATAAA+TGG | - | contig65end:11298-11317 | MsG0080049080.01.T01:CDS | 35.0% | |
| CATACATATTCCATTTGCGT+AGG | - | contig65end:11088-11107 | MsG0080049080.01.T01:CDS | 35.0% | |
| GCATTCACTTATTACAGAGA+TGG | - | contig65end:11400-11419 | MsG0080049080.01.T01:CDS | 35.0% | |
| GTCTGTGGTTAACTAATTGA+CGG | + | contig65end:10460-10479 | None:intergenic | 35.0% | |
| TAAAAGAATCCCCCAAACAA+AGG | + | contig65end:11237-11256 | None:intergenic | 35.0% | |
| TACCAGGACTAACTAGTAAA+CGG | - | contig65end:10189-10208 | MsG0080049080.01.T01:CDS | 35.0% | |
| TAGAGAATCCACATCAAAGT+TGG | - | contig65end:10881-10900 | MsG0080049080.01.T01:intron | 35.0% | |
| TCAAAAAAATACGTCGTCTG+GGG | - | contig65end:10162-10181 | MsG0080049080.01.T01:CDS | 35.0% | |
| TCTGTGGTTAACTAATTGAC+GGG | + | contig65end:10459-10478 | None:intergenic | 35.0% | |
| TTTATCCGAGATCTAGTCAT+AGG | + | contig65end:11298-11317 | None:intergenic | 35.0% | |
| ! | GATATTGGCTACAATGGTAA+AGG | + | contig65end:11341-11360 | None:intergenic | 35.0% |
| ! | TCTTTTTCTCCAGAAGTTGT+CGG | + | contig65end:11379-11398 | None:intergenic | 35.0% |
| ! | TGTACAATTCCTTTGTTTGG+GGG | - | contig65end:11225-11244 | MsG0080049080.01.T01:CDS | 35.0% |
| !!! | CATACTTTTTCGATTGGGTA+TGG | - | contig65end:10415-10434 | MsG0080049080.01.T01:intron | 35.0% |
| !!! | CGACGTATTTTTTTGAAACG+AGG | + | contig65end:10158-10177 | None:intergenic | 35.0% |
| ACATGAATGGGGAAAATCCT+CGG | + | contig65end:10781-10800 | None:intergenic | 40.0% | |
| ACCCACGTCTATACATGAAT+GGG | + | contig65end:10793-10812 | None:intergenic | 40.0% | |
| CAAAAAAATACGTCGTCTGG+GGG | - | contig65end:10163-10182 | MsG0080049080.01.T01:CDS | 40.0% | |
| CGAATAATTCCGACAACTTC+TGG | - | contig65end:11367-11386 | MsG0080049080.01.T01:CDS | 40.0% | |
| CTTAAATACGTTCGTATCGC+TGG | - | contig65end:10332-10351 | MsG0080049080.01.T01:intron | 40.0% | |
| GGAATGGATCAAGAGTCAAA+TGG | + | contig65end:10624-10643 | None:intergenic | 40.0% | |
| GGATCAAGAGTCAAATGGAT+TGG | + | contig65end:10619-10638 | None:intergenic | 40.0% | |
| TACCCACGTCTATACATGAA+TGG | + | contig65end:10794-10813 | None:intergenic | 40.0% | |
| TCATGTATAGACGTGGGTAT+AGG | - | contig65end:10795-10814 | MsG0080049080.01.T01:intron | 40.0% | |
| TGAGGTTTGCAACGATAACT+TGG | + | contig65end:10515-10534 | None:intergenic | 40.0% | |
| TGATGAACTTGATAAGGGTG+CGG | - | contig65end:10944-10963 | MsG0080049080.01.T01:intron | 40.0% | |
| TGCTACCTATGACTAGATCT+CGG | - | contig65end:11290-11309 | MsG0080049080.01.T01:CDS | 40.0% | |
| ! | ATAGTGGAATAAAGTGGGCA+AGG | + | contig65end:10833-10852 | None:intergenic | 40.0% |
| ! | GACAACTTCTGGAGAAAAAG+AGG | - | contig65end:11378-11397 | MsG0080049080.01.T01:CDS | 40.0% |
| ! | GAGGGGCATAATCATTATGT+AGG | + | contig65end:11053-11072 | None:intergenic | 40.0% |
| !! | AATGGATTGGCAATTCTTCG+CGG | + | contig65end:10606-10625 | None:intergenic | 40.0% |
| !! | GTAGGCTTTTTGTTTACCGA+GGG | + | contig65end:10987-11006 | None:intergenic | 40.0% |
| !! | TGTAGGCTTTTTGTTTACCG+AGG | + | contig65end:10988-11007 | None:intergenic | 40.0% |
| !! | TTAACTAATTGACGGGCTTG+AGG | + | contig65end:10452-10471 | None:intergenic | 40.0% |
| !!! | ATTTTTTACTCGAGCGCGAT+TGG | + | contig65end:10241-10260 | None:intergenic | 40.0% |
| ACTAGTAAACGGCCTACAGT+TGG | - | contig65end:10200-10219 | MsG0080049080.01.T01:CDS | 45.0% | |
| ATGCCTCACTATTCACTCGA+GGG | + | contig65end:11071-11090 | None:intergenic | 45.0% | |
| ATTATGTGCGCCTACGCAAA+TGG | + | contig65end:11101-11120 | None:intergenic | 45.0% | |
| CCCACGTCTATACATGAATG+GGG | + | contig65end:10792-10811 | None:intergenic | 45.0% | |
| CCCCATTCATGTATAGACGT+GGG | - | contig65end:10789-10808 | MsG0080049080.01.T01:intron | 45.0% | |
| CTAAGTTCGCTTCCAACTGT+AGG | + | contig65end:10215-10234 | None:intergenic | 45.0% | |
| GGAAAAGCGAAAGGTTCAAC+CGG | - | contig65end:10353-10372 | MsG0080049080.01.T01:intron | 45.0% | |
| TATGCCTCACTATTCACTCG+AGG | + | contig65end:11072-11091 | None:intergenic | 45.0% | |
| TCCCCATTCATGTATAGACG+TGG | - | contig65end:10788-10807 | MsG0080049080.01.T01:intron | 45.0% | |
| ! | TAGCACTGGAACTGCTATGT+AGG | + | contig65end:11005-11024 | None:intergenic | 45.0% |
| !! | ATGGATTGGCAATTCTTCGC+GGG | + | contig65end:10605-10624 | None:intergenic | 45.0% |
| !!! | CTTAATTTAATATTTTAATT+AGG | + | contig65end:10746-10765 | None:intergenic | 5.0% |
| AAGAGAGGGATTCGAACCCT+CGG | - | contig65end:10968-10987 | MsG0080049080.01.T01:intron | 50.0% | |
| CGTATCGCTGGAAAAGCGAA+AGG | - | contig65end:10344-10363 | MsG0080049080.01.T01:intron | 50.0% | |
| GGCCGTTTACTAGTTAGTCC+TGG | + | contig65end:10194-10213 | None:intergenic | 50.0% | |
| TGCCTCACTATTCACTCGAG+GGG | + | contig65end:11070-11089 | None:intergenic | 50.0% | |
| ! | GATAAGGGTGCGGAAAGAGA+GGG | - | contig65end:10954-10973 | MsG0080049080.01.T01:intron | 50.0% |
| ! | TGATAAGGGTGCGGAAAGAG+AGG | - | contig65end:10953-10972 | MsG0080049080.01.T01:intron | 50.0% |
| !! | TGGATTGGCAATTCTTCGCG+GGG | + | contig65end:10604-10623 | None:intergenic | 50.0% |
| AGAGATGGCCGAGTGGTTGA+AGG | + | contig65end:11030-11049 | None:intergenic | 55.0% | |
| ATGTAGGAGAGATGGCCGAG+TGG | + | contig65end:11037-11056 | None:intergenic | 55.0% | |
| GATTGGCAATTCTTCGCGGG+GGG | + | contig65end:10602-10621 | None:intergenic | 55.0% | |
| GTGCTACGCCTTCAACCACT+CGG | - | contig65end:11019-11038 | MsG0080049080.01.T01:intron | 55.0% | |
| TGCCCCTCGAGTGAATAGTG+AGG | - | contig65end:11065-11084 | MsG0080049080.01.T01:intron | 55.0% | |
| ! | AGTGGTTGAAGGCGTAGCAC+TGG | + | contig65end:11019-11038 | None:intergenic | 55.0% |
| ! | GGATTGGCAATTCTTCGCGG+GGG | + | contig65end:10603-10622 | None:intergenic | 55.0% |
| CGTCGTCTGGGGGCTTTACC+AGG | - | contig65end:10173-10192 | MsG0080049080.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| contig65end | gene | 10137 | 11432 | 10137 | ID=MsG0080049080.01;Name=MsG0080049080.01 |
| contig65end | mRNA | 10137 | 11432 | 10137 | ID=MsG0080049080.01.T01;Parent=MsG0080049080.01;Name=MsG0080049080.01.T01;_AED=0.49;_eAED=0.52;_QI=0|0|0|1|0|0|2|0|171 |
| contig65end | exon | 11067 | 11432 | 11067 | ID=MsG0080049080.01.T01:exon:12837;Parent=MsG0080049080.01.T01 |
| contig65end | exon | 10137 | 10286 | 10137 | ID=MsG0080049080.01.T01:exon:12836;Parent=MsG0080049080.01.T01 |
| contig65end | CDS | 11067 | 11432 | 11067 | ID=MsG0080049080.01.T01:cds;Parent=MsG0080049080.01.T01 |
| contig65end | CDS | 10137 | 10286 | 10137 | ID=MsG0080049080.01.T01:cds;Parent=MsG0080049080.01.T01 |
| Gene Sequence |
| Protein sequence |
