AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280007853.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007853.01.T01 MTR_2g034140 94.196 224 13 0 119 342 201 424 5.91e-136 393
MsG0280007853.01.T01 MTR_2g034140 100.000 117 0 0 6 122 20 136 1.06e-71 229
MsG0280007853.01.T01 MTR_2g034140 94.196 224 13 0 119 342 187 410 7.79e-136 392
MsG0280007853.01.T01 MTR_2g034140 100.000 122 0 0 1 122 1 122 3.48e-76 240
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 66 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATCCTGAGCATCTCTTAT+TGG 0.255116 2:-21881214 MsG0280007853.01.T01:CDS
AATATTACCTTGCACTTGTA+TGG 0.266728 2:+21882730 None:intergenic
GCAGGCTTTCTTCAACTTGC+TGG 0.275625 2:-21881705 MsG0280007853.01.T01:intron
AGTCTCTCCAGAGAGGTAAT+TGG 0.280375 2:-21884512 MsG0280007853.01.T01:CDS
AGCATCTCTTATTGGCTCTA+AGG 0.283609 2:-21881206 MsG0280007853.01.T01:CDS
ACATCTTATGCTGCCTTAGA+AGG 0.333220 2:-21883537 MsG0280007853.01.T01:CDS
GAAGAACTATGGCGTGCTTT+AGG 0.333345 2:-21882532 MsG0280007853.01.T01:CDS
AAGTTGAAGTTTCTAAGATT+TGG 0.338252 2:+21882294 None:intergenic
ATCTTAGAAACTTCAACTTA+TGG 0.342098 2:-21882290 MsG0280007853.01.T01:CDS
ATTGTTGAATCTCCAACATT+AGG 0.343139 2:+21882351 None:intergenic
ATAGATTATTGACATTTAAC+AGG 0.344744 2:+21881162 None:intergenic
AGTTTGGTTTACACTCTTGC+TGG 0.350609 2:-21884435 MsG0280007853.01.T01:CDS
TATGCTGCCTTAGAAGGCCT+TGG 0.364084 2:-21883531 MsG0280007853.01.T01:CDS
CGTCCGATGAGTGGAGATAT+TGG 0.364584 2:-21882145 MsG0280007853.01.T01:CDS
TCATCACCCAAGGCCTTCTA+AGG 0.373122 2:+21883524 None:intergenic
AATAGCCTTTGCTGCTCAAT+TGG 0.377573 2:-21882101 MsG0280007853.01.T01:CDS
TCTAAGGGAAGCACTTGCTT+TGG 0.385951 2:-21881190 MsG0280007853.01.T01:CDS
GGCATACATGTTCAGATTGT+TGG 0.392739 2:-21881291 MsG0280007853.01.T01:intron
GTAGACTGTTTGAAGAACTA+TGG 0.410606 2:-21882543 MsG0280007853.01.T01:CDS
TGAAGCAGCTCCACCATGTT+GGG 0.410865 2:+21881245 None:intergenic
TTGTTTGTTTCCAGAATACT+TGG 0.412856 2:-21881521 MsG0280007853.01.T01:intron
GTCCGATGAGTGGAGATATT+GGG 0.417237 2:-21882144 MsG0280007853.01.T01:CDS
ATGCTGCCTTAGAAGGCCTT+GGG 0.429919 2:-21883530 MsG0280007853.01.T01:CDS
TATTGGGAGAGGAGCAACTA+AGG 0.440476 2:-21882128 MsG0280007853.01.T01:CDS
CAGGTTAGTTTACCTAATGT+TGG 0.448264 2:-21882363 MsG0280007853.01.T01:CDS
GTCTCTCCAGAGAGGTAATT+GGG 0.449708 2:-21884511 MsG0280007853.01.T01:CDS
CTTGATTGAAACTTTGATGT+TGG 0.455698 2:-21881124 MsG0280007853.01.T01:three_prime_UTR
GGCTTTCTTCAACTTGCTGG+TGG 0.463509 2:-21881702 MsG0280007853.01.T01:CDS
GTGCTTAATTCCAGCAAAAG+TGG 0.464416 2:-21884625 MsG0280007853.01.T01:CDS
TGATATCAGAAATCTCAGTT+TGG 0.470509 2:-21884451 MsG0280007853.01.T01:CDS
GATCTTCACTTTCGCAAAGC+CGG 0.473240 2:-21883481 MsG0280007853.01.T01:intron
CCATCACAAGCTTTAATTAG+CGG 0.477742 2:-21881466 MsG0280007853.01.T01:CDS
AGGGAAGCACTTGCTTTGGT+TGG 0.480501 2:-21881186 MsG0280007853.01.T01:CDS
TTAATTAGCGGCATAGCCTA+TGG 0.486305 2:-21881454 MsG0280007853.01.T01:CDS
AGAGCCAATAAGAGATGCTC+AGG 0.491628 2:+21881210 None:intergenic
ACTAATGCTCACACAATTGA+AGG 0.491760 2:-21881678 MsG0280007853.01.T01:CDS
GCTTCACCCAATTACCTCTC+TGG 0.500095 2:+21884505 None:intergenic
TAGAAACTTCAACTTATGGC+AGG 0.529444 2:-21882286 MsG0280007853.01.T01:intron
CCGCTAATTAAAGCTTGTGA+TGG 0.532669 2:+21881466 None:intergenic
GAAGAACCTCATCAACACTT+TGG 0.544428 2:-21884574 MsG0280007853.01.T01:CDS
TTTAGCCAATTGAGCAGCAA+AGG 0.545220 2:+21882096 None:intergenic
AAAGCAAAAGATAGACCTCC+TGG 0.545248 2:-21882076 MsG0280007853.01.T01:intron
TTAGACGGCCGTCCGATGAG+TGG 0.552985 2:-21882154 MsG0280007853.01.T01:CDS
GCATCTCTTATTGGCTCTAA+GGG 0.555107 2:-21881205 MsG0280007853.01.T01:CDS
TTGAAGCAGCTCCACCATGT+TGG 0.555464 2:+21881244 None:intergenic
CTTTCGCGCGTAGCCACCAT+AGG 0.556649 2:+21881438 None:intergenic
AATTGGGTGAAGCTCATTTG+TGG 0.561203 2:-21884495 MsG0280007853.01.T01:CDS
TCCACCATGTTGGGATTGCA+TGG 0.562511 2:+21881254 None:intergenic
GTTGTGAGTGCTGTGAATGA+AGG 0.582088 2:-21883577 MsG0280007853.01.T01:CDS
ATGAGTGGAGATATTGGGAG+AGG 0.585956 2:-21882139 MsG0280007853.01.T01:CDS
CTATGGTGGCTACGCGCGAA+AGG 0.602405 2:-21881437 MsG0280007853.01.T01:intron
GAAGTGTGTTGTTCATCAGA+AGG 0.605834 2:-21884598 MsG0280007853.01.T01:CDS
CTCCCAATATCTCCACTCAT+CGG 0.614980 2:+21882142 None:intergenic
TTGGTTTACACTCTTGCTGG+AGG 0.616962 2:-21884432 MsG0280007853.01.T01:intron
TAGAAATCCATACAAGTGCA+AGG 0.617877 2:-21882737 MsG0280007853.01.T01:intron
GAAGCTCCAAAGTGTTGATG+AGG 0.621149 2:+21884568 None:intergenic
ATGTATAAACTAAAGTTAGA+CGG 0.636370 2:-21882169 MsG0280007853.01.T01:intron
GATGATGATGATGAAATGGA+AGG 0.636813 2:+21884546 None:intergenic
AGATCCATGCAATCCCAACA+TGG 0.647702 2:-21881258 MsG0280007853.01.T01:CDS
CCTCTCTGGAGAGACTCAAG+TGG 0.651836 2:+21884519 None:intergenic
ATTAGCGGCATAGCCTATGG+TGG 0.654448 2:-21881451 MsG0280007853.01.T01:CDS
CAATATCTCCACTCATCGGA+CGG 0.667049 2:+21882146 None:intergenic
TTGACACTGATCATCACCCA+AGG 0.679983 2:+21883514 None:intergenic
CCACTTGAGTCTCTCCAGAG+AGG 0.698123 2:-21884519 MsG0280007853.01.T01:CDS
TCCATGCAATCCCAACATGG+TGG 0.701127 2:-21881255 MsG0280007853.01.T01:CDS
TGTGAATGAAGGAATTGAAG+CGG 0.725569 2:-21883566 MsG0280007853.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTATAATAATTTTTTATT+TGG - Chr2:21881365-21881384 MsG0280007853.01.T01:intron 0.0%
!!! TTTATAATAATTTTTTATTT+GGG - Chr2:21881366-21881385 MsG0280007853.01.T01:intron 0.0%
!!! CATTTAAGTTTTTATATTAT+TGG + Chr2:21881847-21881866 None:intergenic 10.0%
!!! TATATAATTGAAATGTTTTA+CGG + Chr2:21881758-21881777 None:intergenic 10.0%
!! AAAAACTTAAATGATGAATA+TGG - Chr2:21881854-21881873 MsG0280007853.01.T01:intron 15.0%
!! GATATTACACAAATAATTAA+CGG + Chr2:21882882-21882901 None:intergenic 15.0%
!! TAAAACTTGTATTGTTTAAT+TGG - Chr2:21882727-21882746 MsG0280007853.01.T01:intron 15.0%
!! TAAGAATTTATAATATCAGA+TGG + Chr2:21882854-21882873 None:intergenic 15.0%
!! TTAATTTATTCCTTATTGTT+GGG + Chr2:21881647-21881666 None:intergenic 15.0%
!!! ATTTCTACATTTAAAACTTT+TGG - Chr2:21882373-21882392 MsG0280007853.01.T01:intron 15.0%
!! AAAGTTTAATATATGCTTAC+TGG - Chr2:21882456-21882475 MsG0280007853.01.T01:intron 20.0%
!! AACAAAACAAATTCAAGAAT+TGG - Chr2:21882097-21882116 MsG0280007853.01.T01:CDS 20.0%
!! AATAAACATGGAATAGAATT+TGG + Chr2:21883539-21883558 None:intergenic 20.0%
!! ATAGATTATTGACATTTAAC+AGG + Chr2:21884589-21884608 None:intergenic 20.0%
!! ATGATAGATATAAATCCTAA+AGG + Chr2:21883992-21884011 None:intergenic 20.0%
!! ATGTATAAACTAAAGTTAGA+CGG - Chr2:21883579-21883598 MsG0280007853.01.T01:CDS 20.0%
!! CTTAATTTATTCCTTATTGT+TGG + Chr2:21881648-21881667 None:intergenic 20.0%
!!! ATCCTACTTATTTTATCATA+GGG + Chr2:21882820-21882839 None:intergenic 20.0%
!!! TATCCTACTTATTTTATCAT+AGG + Chr2:21882821-21882840 None:intergenic 20.0%
! AACCTCTTCTAATATTTAAG+GGG - Chr2:21883285-21883304 MsG0280007853.01.T01:intron 25.0%
! AATTCAAGAATTGGATTATG+TGG - Chr2:21882106-21882125 MsG0280007853.01.T01:CDS 25.0%
! ACTTATTTGACCTTATAAGT+AGG - Chr2:21881464-21881483 MsG0280007853.01.T01:CDS 25.0%
! AGTTATACAAGTATTTCCAT+AGG + Chr2:21882058-21882077 None:intergenic 25.0%
! ATCTTAGAAACTTCAACTTA+TGG - Chr2:21883458-21883477 MsG0280007853.01.T01:intron 25.0%
! ATTGAAGGATTGAAAAAAGA+AGG - Chr2:21884085-21884104 MsG0280007853.01.T01:intron 25.0%
! ATTTACTATTGAAATGATCC+AGG - Chr2:21883366-21883385 MsG0280007853.01.T01:intron 25.0%
! CAACCTCTTCTAATATTTAA+GGG - Chr2:21883284-21883303 MsG0280007853.01.T01:intron 25.0%
! GATTGAAATAATCTGAAAAC+AGG + Chr2:21882000-21882019 None:intergenic 25.0%
! TAAATATTAGAAGAGGTTGA+AGG + Chr2:21883283-21883302 None:intergenic 25.0%
! TCAACCTCTTCTAATATTTA+AGG - Chr2:21883283-21883302 MsG0280007853.01.T01:intron 25.0%
! TCAGCTATATAAAATAGCAT+AGG - Chr2:21882018-21882037 MsG0280007853.01.T01:intron 25.0%
! TTCCATAAATACTTGTTTCA+AGG - Chr2:21883322-21883341 MsG0280007853.01.T01:intron 25.0%
! TTTATAATATCAGATGGAAC+TGG + Chr2:21882848-21882867 None:intergenic 25.0%
!! AATTTAGAACAGAAACAGAA+TGG + Chr2:21884374-21884393 None:intergenic 25.0%
!! GAAAACATTTTGTTCATAGA+AGG + Chr2:21883424-21883443 None:intergenic 25.0%
!! GACTCAATTTCTTATGATTT+TGG - Chr2:21881581-21881600 MsG0280007853.01.T01:intron 25.0%
!! GTCTAACTTTAGTTTATACA+TGG + Chr2:21883580-21883599 None:intergenic 25.0%
!! TATGATTTTGGATAGAAATG+CGG - Chr2:21881593-21881612 MsG0280007853.01.T01:intron 25.0%
!!! AAGTTGAAGTTTCTAAGATT+TGG + Chr2:21883457-21883476 None:intergenic 25.0%
!!! CTACATTTAAAACTTTTGGA+AGG - Chr2:21882377-21882396 MsG0280007853.01.T01:intron 25.0%
!!! TATACTTTTCATTTTGATCC+AGG - Chr2:21882920-21882939 MsG0280007853.01.T01:intron 25.0%
!!! TGGGTTTGTTAAAATAAACA+TGG + Chr2:21883551-21883570 None:intergenic 25.0%
!!! TTTCTGTTCTAAATTTTCTG+TGG - Chr2:21884379-21884398 MsG0280007853.01.T01:intron 25.0%
!!! TTTTTTTGACAAACACTCAA+TGG + Chr2:21881945-21881964 None:intergenic 25.0%
AACACTCAATGGAATGATTA+TGG + Chr2:21881934-21881953 None:intergenic 30.0%
AACCCCTTAAATATTAGAAG+AGG + Chr2:21883290-21883309 None:intergenic 30.0%
AATATTACCTTGCACTTGTA+TGG + Chr2:21883021-21883040 None:intergenic 30.0%
AATGTTTCATTCCCTTAACA+TGG - Chr2:21884021-21884040 MsG0280007853.01.T01:intron 30.0%
ACTTAAATGATGAATATGGC+TGG - Chr2:21881858-21881877 MsG0280007853.01.T01:intron 30.0%
AGCCTTGAAACAAGTATTTA+TGG + Chr2:21883327-21883346 None:intergenic 30.0%
AGTTTATACATGGCAAAGAT+GGG + Chr2:21883570-21883589 None:intergenic 30.0%
ATACATGCATGAAACTTGAA+AGG - Chr2:21881406-21881425 MsG0280007853.01.T01:intron 30.0%
ATGGCATTGTTTCAATTCTT+AGG - Chr2:21882343-21882362 MsG0280007853.01.T01:CDS 30.0%
ATTGTTGAATCTCCAACATT+AGG + Chr2:21883400-21883419 None:intergenic 30.0%
CAGTTATATCCTAGTATTTC+AGG + Chr2:21883049-21883068 None:intergenic 30.0%
CATTACACATCAGAATCTTA+TGG - Chr2:21882324-21882343 MsG0280007853.01.T01:CDS 30.0%
CTTGATTGAAACTTTGATGT+TGG - Chr2:21884624-21884643 MsG0280007853.01.T01:CDS 30.0%
GAAAGACTTCGTCTATATTT+CGG - Chr2:21881691-21881710 MsG0280007853.01.T01:CDS 30.0%
GACATGATATGAATCTATGA+TGG - Chr2:21883919-21883938 MsG0280007853.01.T01:intron 30.0%
GTCCCTATGATAAAATAAGT+AGG - Chr2:21882815-21882834 MsG0280007853.01.T01:intron 30.0%
GTTAAAACCTTTAGTACTCT+TGG + Chr2:21882638-21882657 None:intergenic 30.0%
TAAAATCTTATCCTGAGTTG+AGG + Chr2:21883825-21883844 None:intergenic 30.0%
TACATGCATGAAACTTGAAA+GGG - Chr2:21881407-21881426 MsG0280007853.01.T01:intron 30.0%
TAGTTTATACATGGCAAAGA+TGG + Chr2:21883571-21883590 None:intergenic 30.0%
TATTAGTGTCCTGAAATACT+AGG - Chr2:21883037-21883056 MsG0280007853.01.T01:intron 30.0%
TATTTGACCTTATAAGTAGG+TGG - Chr2:21881467-21881486 MsG0280007853.01.T01:CDS 30.0%
TGATATCAGAAATCTCAGTT+TGG - Chr2:21881297-21881316 MsG0280007853.01.T01:intron 30.0%
TTGAATAAGAATCGTCTTAC+CGG + Chr2:21882289-21882308 None:intergenic 30.0%
TTGTTTGTTTCCAGAATACT+TGG - Chr2:21884227-21884246 MsG0280007853.01.T01:intron 30.0%
TTTAATTGGATTGAACATGC+AGG - Chr2:21882741-21882760 MsG0280007853.01.T01:CDS 30.0%
TTTGTGATGTAGATTTCTCT+TGG + Chr2:21882595-21882614 None:intergenic 30.0%
! ATTTTATCATAGGGACAAAC+TGG + Chr2:21882811-21882830 None:intergenic 30.0%
! TCTTTTCAATGTAAGACTTG+AGG + Chr2:21881786-21881805 None:intergenic 30.0%
! TTTTCATGATCCAAGTATTC+TGG + Chr2:21884240-21884259 None:intergenic 30.0%
!! AGTTGATGATGATGATGAAA+TGG + Chr2:21881209-21881228 None:intergenic 30.0%
!! GGATAAGATTTTAACGAGAT+AGG - Chr2:21883832-21883851 MsG0280007853.01.T01:intron 30.0%
!! TAAGAGTATGTTTTAGACGA+GGG - Chr2:21881664-21881683 MsG0280007853.01.T01:CDS 30.0%
!! TTAAGAGTATGTTTTAGACG+AGG - Chr2:21881663-21881682 MsG0280007853.01.T01:CDS 30.0%
AAACTTGCCACCTACTTATA+AGG + Chr2:21881477-21881496 None:intergenic 35.0%
AAATGCGGTATGGATGATTT+GGG - Chr2:21881608-21881627 MsG0280007853.01.T01:intron 35.0%
AAGATCTTATCCTGTCATGT+TGG - Chr2:21883787-21883806 MsG0280007853.01.T01:intron 35.0%
ACTAATGCTCACACAATTGA+AGG - Chr2:21884070-21884089 MsG0280007853.01.T01:intron 35.0%
ATGTCTCAATCCAGTGTTTA+AGG + Chr2:21883904-21883923 None:intergenic 35.0%
ATTATGCATTGTCTTCCATG+CGG - Chr2:21884700-21884719 MsG0280007853.01.T01:five_prime_UTR 35.0%
CAACATTAGGTAAACTAACC+TGG + Chr2:21883387-21883406 None:intergenic 35.0%
CAAGTATTTCCATAGGTTGT+AGG + Chr2:21882051-21882070 None:intergenic 35.0%
CTAACTCAACCTTACAAAAC+CGG + Chr2:21881823-21881842 None:intergenic 35.0%
GGGATCAAATTCTGTTAAGA+AGG + Chr2:21882507-21882526 None:intergenic 35.0%
GTAGACTGTTTGAAGAACTA+TGG - Chr2:21883205-21883224 MsG0280007853.01.T01:intron 35.0%
GTCAAGTTATCGTATCATGA+TGG - Chr2:21883876-21883895 MsG0280007853.01.T01:intron 35.0%
GTCACATTATGTGATGACAT+TGG - Chr2:21884436-21884455 MsG0280007853.01.T01:CDS 35.0%
TAGAAACTTCAACTTATGGC+AGG - Chr2:21883462-21883481 MsG0280007853.01.T01:intron 35.0%
TAGAAATCCATACAAGTGCA+AGG - Chr2:21883011-21883030 MsG0280007853.01.T01:intron 35.0%
TCTCTATCATGACCATCAAA+CGG + Chr2:21883746-21883765 None:intergenic 35.0%
TGTGAATGAAGGAATTGAAG+CGG - Chr2:21882182-21882201 MsG0280007853.01.T01:intron 35.0%
TTGAATTGTGAATACGAACC+AGG + Chr2:21883693-21883712 None:intergenic 35.0%
! CCATCACAAGCTTTAATTAG+CGG - Chr2:21884282-21884301 MsG0280007853.01.T01:intron 35.0%
! GATGATGATGATGAAATGGA+AGG + Chr2:21881205-21881224 None:intergenic 35.0%
! TTTGATGGTCATGATAGAGA+CGG - Chr2:21883746-21883765 MsG0280007853.01.T01:intron 35.0%
! TTTTGGATAGAAATGCGGTA+TGG - Chr2:21881598-21881617 MsG0280007853.01.T01:intron 35.0%
!! AAGATTTTAACGAGATAGGC+AGG - Chr2:21883836-21883855 MsG0280007853.01.T01:intron 35.0%
!! CAGGTTAGTTTACCTAATGT+TGG - Chr2:21883385-21883404 MsG0280007853.01.T01:intron 35.0%
!! CTTTAGTACTCTTGGTGTTT+CGG + Chr2:21882630-21882649 None:intergenic 35.0%
!! TTTTCATTTTGATCCAGGAG+AGG - Chr2:21882925-21882944 MsG0280007853.01.T01:intron 35.0%
!!! ATGATGAATATGGCTGGTTT+TGG - Chr2:21881864-21881883 MsG0280007853.01.T01:intron 35.0%
AAAGAGACAAGACCTCAAAC+CGG - Chr2:21881801-21881820 MsG0280007853.01.T01:intron 40.0%
AAAGCAAAAGATAGACCTCC+TGG - Chr2:21883672-21883691 MsG0280007853.01.T01:intron 40.0%
AAGAAAGCCTGCCATGTTAA+GGG + Chr2:21884035-21884054 None:intergenic 40.0%
AATAGCCTTTGCTGCTCAAT+TGG - Chr2:21883647-21883666 MsG0280007853.01.T01:intron 40.0%
AATGCGGTATGGATGATTTG+GGG - Chr2:21881609-21881628 MsG0280007853.01.T01:intron 40.0%
AATTGGGTGAAGCTCATTTG+TGG - Chr2:21881253-21881272 MsG0280007853.01.T01:CDS 40.0%
AATTGTGAATACGAACCAGG+AGG + Chr2:21883690-21883709 None:intergenic 40.0%
ACATCTTATGCTGCCTTAGA+AGG - Chr2:21882211-21882230 MsG0280007853.01.T01:intron 40.0%
ATTGGATTGAACATGCAGGA+CGG - Chr2:21882745-21882764 MsG0280007853.01.T01:CDS 40.0%
CCGCTAATTAAAGCTTGTGA+TGG + Chr2:21884285-21884304 None:intergenic 40.0%
CTCTATCATGACCATCAAAC+GGG + Chr2:21883745-21883764 None:intergenic 40.0%
CTTAACAGAATTTGATCCCG+AGG - Chr2:21882508-21882527 MsG0280007853.01.T01:CDS 40.0%
CTTACATATGTTACCTCTCC+TGG + Chr2:21882941-21882960 None:intergenic 40.0%
GAAATGCGGTATGGATGATT+TGG - Chr2:21881607-21881626 MsG0280007853.01.T01:intron 40.0%
GAAGAACCTCATCAACACTT+TGG - Chr2:21881174-21881193 MsG0280007853.01.T01:CDS 40.0%
GAGTTAGAAACCAACATGAC+AGG + Chr2:21883800-21883819 None:intergenic 40.0%
GATAGAGACGGATAGGATAT+GGG - Chr2:21883758-21883777 MsG0280007853.01.T01:intron 40.0%
GCAGGATATGATATGTGACA+TGG - Chr2:21883854-21883873 MsG0280007853.01.T01:intron 40.0%
GGAATGAGATTGCATTAGCA+GGG + Chr2:21882574-21882593 None:intergenic 40.0%
GGCATACATGTTCAGATTGT+TGG - Chr2:21884457-21884476 MsG0280007853.01.T01:CDS 40.0%
GTATTTCCATAGGTTGTAGG+TGG + Chr2:21882048-21882067 None:intergenic 40.0%
GTGCTTAATTCCAGCAAAAG+TGG - Chr2:21881123-21881142 MsG0280007853.01.T01:three_prime_UTR 40.0%
TCATCCTGAGCATCTCTTAT+TGG - Chr2:21884534-21884553 MsG0280007853.01.T01:CDS 40.0%
TCCTTATTGTTGGGTCATCA+GGG + Chr2:21881638-21881657 None:intergenic 40.0%
TGATAGAGACGGATAGGATA+TGG - Chr2:21883757-21883776 MsG0280007853.01.T01:intron 40.0%
TGGAATGAGATTGCATTAGC+AGG + Chr2:21882575-21882594 None:intergenic 40.0%
TTAATTAGCGGCATAGCCTA+TGG - Chr2:21884294-21884313 MsG0280007853.01.T01:intron 40.0%
TTCCTTATTGTTGGGTCATC+AGG + Chr2:21881639-21881658 None:intergenic 40.0%
TTTAGCCAATTGAGCAGCAA+AGG + Chr2:21883655-21883674 None:intergenic 40.0%
TTTCATTCCCTTAACATGGC+AGG - Chr2:21884025-21884044 MsG0280007853.01.T01:intron 40.0%
! AGTTTGGTTTACACTCTTGC+TGG - Chr2:21881313-21881332 MsG0280007853.01.T01:intron 40.0%
! CATTTGTGGTGCAAGTTTTG+AGG - Chr2:21881267-21881286 MsG0280007853.01.T01:CDS 40.0%
! GAAGTGTGTTGTTCATCAGA+AGG - Chr2:21881150-21881169 MsG0280007853.01.T01:exon 40.0%
! GATGTATCGACACAAGGAAA+TGG + Chr2:21883171-21883190 None:intergenic 40.0%
! GTGGCAAGTTTGAGTTAGAA+TGG - Chr2:21881486-21881505 MsG0280007853.01.T01:CDS 40.0%
! GTGTCGATACATCCTTCTAT+AGG - Chr2:21883178-21883197 MsG0280007853.01.T01:intron 40.0%
! TAGAAGGATGTATCGACACA+AGG + Chr2:21883177-21883196 None:intergenic 40.0%
!! AACCTTACAAAACCGGTTTG+AGG + Chr2:21881816-21881835 None:intergenic 40.0%
!! AGCATCTCTTATTGGCTCTA+AGG - Chr2:21884542-21884561 MsG0280007853.01.T01:CDS 40.0%
!! CACTTCTTATCCACTTTTGC+TGG + Chr2:21881136-21881155 None:intergenic 40.0%
!! CGAAACACCAAGAGTACTAA+AGG - Chr2:21882628-21882647 MsG0280007853.01.T01:intron 40.0%
!! GCATCTCTTATTGGCTCTAA+GGG - Chr2:21884543-21884562 MsG0280007853.01.T01:CDS 40.0%
!!! ATATGGCTGGTTTTGGACTT+TGG - Chr2:21881871-21881890 MsG0280007853.01.T01:intron 40.0%
!!! TATGGCTGGTTTTGGACTTT+GGG - Chr2:21881872-21881891 MsG0280007853.01.T01:intron 40.0%
AATCCTAAAGGCCCGATCAA+TGG + Chr2:21883980-21883999 None:intergenic 45.0%
ACTTCAACTTATGGCAGGTG+TGG - Chr2:21883467-21883486 MsG0280007853.01.T01:intron 45.0%
AGAGCCAATAAGAGATGCTC+AGG + Chr2:21884541-21884560 None:intergenic 45.0%
AGATCCATGCAATCCCAACA+TGG - Chr2:21884490-21884509 MsG0280007853.01.T01:CDS 45.0%
AGTCTCTCCAGAGAGGTAAT+TGG - Chr2:21881236-21881255 MsG0280007853.01.T01:CDS 45.0%
ATGAGTGGAGATATTGGGAG+AGG - Chr2:21883609-21883628 MsG0280007853.01.T01:CDS 45.0%
CAATATCTCCACTCATCGGA+CGG + Chr2:21883605-21883624 None:intergenic 45.0%
CAGGATGAGAGAGACATGAT+AGG + Chr2:21883956-21883975 None:intergenic 45.0%
CAGTCTACTCTGCCTATAGA+AGG + Chr2:21883193-21883212 None:intergenic 45.0%
CATGATGGCTCCTTAAACAC+TGG - Chr2:21883891-21883910 MsG0280007853.01.T01:intron 45.0%
CTATCATGTCTCTCTCATCC+TGG - Chr2:21883954-21883973 MsG0280007853.01.T01:intron 45.0%
CTCCCAATATCTCCACTCAT+CGG + Chr2:21883609-21883628 None:intergenic 45.0%
GAAGAAAGCCTGCCATGTTA+AGG + Chr2:21884036-21884055 None:intergenic 45.0%
GAAGAACTATGGCGTGCTTT+AGG - Chr2:21883216-21883235 MsG0280007853.01.T01:intron 45.0%
GATCTTCACTTTCGCAAAGC+CGG - Chr2:21882267-21882286 MsG0280007853.01.T01:intron 45.0%
GGAAAACCACCTACAACCTA+TGG - Chr2:21882039-21882058 MsG0280007853.01.T01:intron 45.0%
GTCCGATGAGTGGAGATATT+GGG - Chr2:21883604-21883623 MsG0280007853.01.T01:CDS 45.0%
GTCTCTCCAGAGAGGTAATT+GGG - Chr2:21881237-21881256 MsG0280007853.01.T01:CDS 45.0%
TATTGGGAGAGGAGCAACTA+AGG - Chr2:21883620-21883639 MsG0280007853.01.T01:intron 45.0%
TCCCTGATGACCCAACAATA+AGG - Chr2:21881634-21881653 MsG0280007853.01.T01:intron 45.0%
TCTTCACAAGACCCGTTTGA+TGG - Chr2:21883731-21883750 MsG0280007853.01.T01:intron 45.0%
TGGTCATGATAGAGACGGAT+AGG - Chr2:21883751-21883770 MsG0280007853.01.T01:intron 45.0%
TTCTAACTCAGCCTCAACTC+AGG - Chr2:21883811-21883830 MsG0280007853.01.T01:intron 45.0%
TTGAAGCTAGTAGCCGTAAG+TGG - Chr2:21883255-21883274 MsG0280007853.01.T01:intron 45.0%
TTGACACTGATCATCACCCA+AGG + Chr2:21882237-21882256 None:intergenic 45.0%
TTGGTTTACACTCTTGCTGG+AGG - Chr2:21881316-21881335 MsG0280007853.01.T01:intron 45.0%
! GTTGTGAGTGCTGTGAATGA+AGG - Chr2:21882171-21882190 MsG0280007853.01.T01:intron 45.0%
!! GAAGCTCCAAAGTGTTGATG+AGG + Chr2:21881183-21881202 None:intergenic 45.0%
!! GACCTCAAACCGGTTTTGTA+AGG - Chr2:21881811-21881830 MsG0280007853.01.T01:intron 45.0%
!! TCTAAGGGAAGCACTTGCTT+TGG - Chr2:21884558-21884577 MsG0280007853.01.T01:CDS 45.0%
ACAGTCCAATGGACAGTCCT+CGG + Chr2:21882528-21882547 None:intergenic 50.0%
ATGCTGCCTTAGAAGGCCTT+GGG - Chr2:21882218-21882237 MsG0280007853.01.T01:intron 50.0%
ATTAGCGGCATAGCCTATGG+TGG - Chr2:21884297-21884316 MsG0280007853.01.T01:intron 50.0%
CAAGGACGTGAACAGTCCAA+TGG + Chr2:21882539-21882558 None:intergenic 50.0%
CATGCAGGACGGAGTCATAA+CGG - Chr2:21882756-21882775 MsG0280007853.01.T01:CDS 50.0%
CGTCCGATGAGTGGAGATAT+TGG - Chr2:21883603-21883622 MsG0280007853.01.T01:CDS 50.0%
CTCTCATCCTGGCCATTGAT+CGG - Chr2:21883965-21883984 MsG0280007853.01.T01:intron 50.0%
GCAGGCTTTCTTCAACTTGC+TGG - Chr2:21884043-21884062 MsG0280007853.01.T01:intron 50.0%
GCTTCACCCAATTACCTCTC+TGG + Chr2:21881246-21881265 None:intergenic 50.0%
TATGCTGCCTTAGAAGGCCT+TGG - Chr2:21882217-21882236 MsG0280007853.01.T01:intron 50.0%
TCATCACCCAAGGCCTTCTA+AGG + Chr2:21882227-21882246 None:intergenic 50.0%
TCCACCATGTTGGGATTGCA+TGG + Chr2:21884497-21884516 None:intergenic 50.0%
TCCATGCAATCCCAACATGG+TGG - Chr2:21884493-21884512 MsG0280007853.01.T01:CDS 50.0%
TCTCATCCTGGCCATTGATC+GGG - Chr2:21883966-21883985 MsG0280007853.01.T01:intron 50.0%
TGAAGCAGCTCCACCATGTT+GGG + Chr2:21884506-21884525 None:intergenic 50.0%
TTGAAGCAGCTCCACCATGT+TGG + Chr2:21884507-21884526 None:intergenic 50.0%
! GCAGGGCAAACATTTTCGCA+AGG + Chr2:21882557-21882576 None:intergenic 50.0%
!! AGGGAAGCACTTGCTTTGGT+TGG - Chr2:21884562-21884581 MsG0280007853.01.T01:CDS 50.0%
!! GAGGTTGAAGGCACCACTTA+CGG + Chr2:21883271-21883290 None:intergenic 50.0%
!! GGCTTTCTTCAACTTGCTGG+TGG - Chr2:21884046-21884065 MsG0280007853.01.T01:intron 50.0%
CAGTCCAATGGACAGTCCTC+GGG + Chr2:21882527-21882546 None:intergenic 55.0%
CCACTTGAGTCTCTCCAGAG+AGG - Chr2:21881229-21881248 MsG0280007853.01.T01:CDS 55.0%
TAAAGGCCCGATCAATGGCC+AGG + Chr2:21883975-21883994 None:intergenic 55.0%
TGATCCCGAGGACTGTCCAT+TGG - Chr2:21882520-21882539 MsG0280007853.01.T01:CDS 55.0%
TGGCCATTGATCGGGCCTTT+AGG - Chr2:21883974-21883993 MsG0280007853.01.T01:intron 55.0%
! CCTCTCTGGAGAGACTCAAG+TGG + Chr2:21881232-21881251 None:intergenic 55.0%
!! GTCATAACGGAGCGCTGCTA+TGG - Chr2:21882769-21882788 MsG0280007853.01.T01:CDS 55.0%
CTATGGTGGCTACGCGCGAA+AGG - Chr2:21884311-21884330 MsG0280007853.01.T01:intron 60.0%
CTTTCGCGCGTAGCCACCAT+AGG + Chr2:21884313-21884332 None:intergenic 60.0%
TTAGACGGCCGTCCGATGAG+TGG - Chr2:21883594-21883613 MsG0280007853.01.T01:CDS 60.0%
!! ACGGAGCGCTGCTATGGCTG+TGG - Chr2:21882775-21882794 MsG0280007853.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 21881050 21884720 21881050 ID=MsG0280007853.01;Name=MsG0280007853.01
Chr2 mRNA 21881050 21884720 21881050 ID=MsG0280007853.01.T01;Parent=MsG0280007853.01;Name=MsG0280007853.01.T01;_AED=0.47;_eAED=0.47;_QI=71|0.87|1|1|1|1|9|117|343
Chr2 exon 21881050 21881298 21881050 ID=MsG0280007853.01.T01:exon:40207;Parent=MsG0280007853.01.T01
Chr2 exon 21881438 21881529 21881438 ID=MsG0280007853.01.T01:exon:40206;Parent=MsG0280007853.01.T01
Chr2 exon 21881640 21881723 21881640 ID=MsG0280007853.01.T01:exon:40205;Parent=MsG0280007853.01.T01
Chr2 exon 21882077 21882176 21882077 ID=MsG0280007853.01.T01:exon:40204;Parent=MsG0280007853.01.T01
Chr2 exon 21882287 21882382 21882287 ID=MsG0280007853.01.T01:exon:40203;Parent=MsG0280007853.01.T01
Chr2 exon 21882501 21882570 21882501 ID=MsG0280007853.01.T01:exon:40202;Parent=MsG0280007853.01.T01
Chr2 exon 21882738 21882828 21882738 ID=MsG0280007853.01.T01:exon:40201;Parent=MsG0280007853.01.T01
Chr2 exon 21883482 21883631 21883482 ID=MsG0280007853.01.T01:exon:40200;Parent=MsG0280007853.01.T01
Chr2 exon 21884433 21884720 21884433 ID=MsG0280007853.01.T01:exon:40199;Parent=MsG0280007853.01.T01
Chr2 five_prime_UTR 21884650 21884720 21884650 ID=MsG0280007853.01.T01:five_prime_utr;Parent=MsG0280007853.01.T01
Chr2 CDS 21884433 21884649 21884433 ID=MsG0280007853.01.T01:cds;Parent=MsG0280007853.01.T01
Chr2 CDS 21883482 21883631 21883482 ID=MsG0280007853.01.T01:cds;Parent=MsG0280007853.01.T01
Chr2 CDS 21882738 21882828 21882738 ID=MsG0280007853.01.T01:cds;Parent=MsG0280007853.01.T01
Chr2 CDS 21882501 21882570 21882501 ID=MsG0280007853.01.T01:cds;Parent=MsG0280007853.01.T01
Chr2 CDS 21882287 21882382 21882287 ID=MsG0280007853.01.T01:cds;Parent=MsG0280007853.01.T01
Chr2 CDS 21882077 21882176 21882077 ID=MsG0280007853.01.T01:cds;Parent=MsG0280007853.01.T01
Chr2 CDS 21881640 21881723 21881640 ID=MsG0280007853.01.T01:cds;Parent=MsG0280007853.01.T01
Chr2 CDS 21881438 21881529 21881438 ID=MsG0280007853.01.T01:cds;Parent=MsG0280007853.01.T01
Chr2 CDS 21881167 21881298 21881167 ID=MsG0280007853.01.T01:cds;Parent=MsG0280007853.01.T01
Chr2 three_prime_UTR 21881050 21881166 21881050 ID=MsG0280007853.01.T01:three_prime_utr;Parent=MsG0280007853.01.T01
Gene Sequence

>MsG0280007853.01.T01

ATGTGCTTAATTCCAGCAAAAGTGGATAAGAAGTGTGTTGTTCATCAGAAGGTGAAGAACCTCATCAACACTTTGGAGCTTCCTTCCATTTCATCATCATCATCAACTCCACTTGAGTCTCTCCAGAGAGGTAATTGGGTGAAGCTCATTTGTGGTGCAAGTTTTGAGGATGTTGTTGATATCAGAAATCTCAGTTTGGTTTACACTCTTGCTGGAGTTGACTGCATTGACTGTGCTGCTGATGCATCTGTTGTGAGTGCTGTGAATGAAGGAATTGAAGCGGCAAGAGACATCTTATGCTGCCTTAGAAGGCCTTGGGTGATGATCAGTGTCAATGATGATAAAGATCTTCACTTTCGCAAAGCCGGAGAGGTAACATATGTAAGAGATGCTGTTACAACTTCTGATCTCATCAAGAGAAACGATGTTGATGCTATAGAAATCCATACAAGTGCAAGGCAGAGTAGACTGTTTGAAGAACTATGGCGTGCTTTAGGAGATTCAGTAGAAAATTTGAAGCTAGTAGCCGTTAGTTTACCTAATGTTGGAGATTCAACAATACCTTCTATGAACAAAATGTTTTCTATTATGAAACCAAATCTTAGAAACTTCAACTTATGGCAGTTAGACGGCCGTCCGATGAGTGGAGATATTGGGAGAGGAGCAACTAAGGAGTCAATAGCCTTTGCTGCTCAATTGGCTAAAGCAAAAGATAGACCTCCTGGCTTTCTTCAACTTGCTGGTGGAACTAATGCTCACACAATTGAAGGATTGAAAAAAGAAGGACTCTTTCAAACAACTAGTTTAAAATACTTGGATCATGAAAATTCAACAATCAGTACATCTAATCCATCACAAGCTTTAATTAGCGGCATAGCCTATGGTGGCTACGCGCGAAAGATTGTTGGTAGAGTATTGAGATCCATGCAATCCCAACATGGTGGAGCTGCTTCAATTGAAGATCATCCTGAGCATCTCTTATTGGCTCTAAGGGAAGCACTTGCTTTGGTTGGACCTGTTAAATGTCAATAA

Protein sequence

>MsG0280007853.01.T01

MCLIPAKVDKKCVVHQKVKNLINTLELPSISSSSSTPLESLQRGNWVKLICGASFEDVVDIRNLSLVYTLAGVDCIDCAADASVVSAVNEGIEAARDILCCLRRPWVMISVNDDKDLHFRKAGEVTYVRDAVTTSDLIKRNDVDAIEIHTSARQSRLFEELWRALGDSVENLKLVAVSLPNVGDSTIPSMNKMFSIMKPNLRNFNLWQLDGRPMSGDIGRGATKESIAFAAQLAKAKDRPPGFLQLAGGTNAHTIEGLKKEGLFQTTSLKYLDHENSTISTSNPSQALISGIAYGGYARKIVGRVLRSMQSQHGGAASIEDHPEHLLLALREALALVGPVKCQ*