AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017604.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017604.01.T01 MTR_3g110022 92.952 227 4 1 1 227 1 215 1.13e-155 430
MsG0380017604.01.T01 MTR_3g110022 92.090 177 2 1 1 177 1 165 5.82e-118 334
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017604.01.T01 AT5G11500 81.498 227 30 1 1 227 1 215 1.60e-139 389
MsG0380017604.01.T01 AT5G11500 81.498 227 29 2 1 227 1 214 1.41e-137 384

Find 75 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTAACTATGCGAAATTATC+AGG 0.173736 3:+98387509 MsG0380017604.01.T01:three_prime_UTR
GATAAAGGAGAATATTAAAT+AGG 0.199656 3:+98387302 MsG0380017604.01.T01:three_prime_UTR
TTCATGTAAACATTGGTTAT+TGG 0.243511 3:+98387155 MsG0380017604.01.T01:exon
ATGGTGTAATCGCCAGCTTC+AGG 0.299549 3:-98383465 None:intergenic
TGACATGAGTGAAGGTTTAT+TGG 0.304812 3:+98384554 MsG0380017604.01.T01:CDS
TGTGTACCCAATTGTGATTT+AGG 0.314237 3:+98387279 MsG0380017604.01.T01:three_prime_UTR
CTTTATCCCTAAATCACAAT+TGG 0.320848 3:-98387286 None:intergenic
TCCTGAAGCAATGTCTTTGT+TGG 0.330602 3:-98387102 None:intergenic
TGAAATCCTCCTCCACTTCC+TGG 0.332125 3:-98387136 None:intergenic
CAATTGTGATTTAGGGATAA+AGG 0.352542 3:+98387287 MsG0380017604.01.T01:three_prime_UTR
ACCATTATTGAGTTGCTTAG+AGG 0.353806 3:-98383423 None:intergenic
CTGCATCATTGTCTTGGTTA+AGG 0.354589 3:+98387243 MsG0380017604.01.T01:three_prime_UTR
TATTAGTCACCTTTCAAATC+AGG 0.360151 3:-98385462 None:intergenic
TCCTCTAAGCAACTCAATAA+TGG 0.369187 3:+98383422 None:intergenic
TGAGTCTTGTTAGGCTTGTC+AGG 0.374176 3:+98387461 MsG0380017604.01.T01:three_prime_UTR
GTCAAAGCAAATTCAATTCA+AGG 0.385597 3:+98384594 MsG0380017604.01.T01:CDS
GGAAATAGAAAGACTAGAAA+AGG 0.394170 3:+98387022 MsG0380017604.01.T01:CDS
TGGCGATTACACCATCTTCA+TGG 0.399028 3:+98383473 MsG0380017604.01.T01:CDS
GTGTACCCAATTGTGATTTA+GGG 0.403094 3:+98387280 MsG0380017604.01.T01:three_prime_UTR
ATAAAGGAGAATATTAAATA+GGG 0.409087 3:+98387303 MsG0380017604.01.T01:three_prime_UTR
TAGGAGCTACAAGGGTTTGA+TGG 0.418648 3:+98387061 MsG0380017604.01.T01:CDS
CACAAGCAAAGTTATAAATC+AGG 0.423869 3:-98387373 None:intergenic
TTCAGGAAGCAAATCATTCC+AGG 0.424780 3:+98387118 MsG0380017604.01.T01:CDS
TCCAACAAAGACATTGCTTC+AGG 0.427259 3:+98387101 MsG0380017604.01.T01:CDS
CTTCAGCCCATGTTTATGTC+AGG 0.447158 3:+98384508 MsG0380017604.01.T01:CDS
CCATGTTTAAATAACCCAAC+TGG 0.448567 3:+98387211 MsG0380017604.01.T01:three_prime_UTR
GGAGGGGAGAATGCAATGAT+TGG 0.450934 3:+98387324 MsG0380017604.01.T01:three_prime_UTR
AGATAAATGAGATTGTTAAC+AGG 0.451759 3:+98385412 MsG0380017604.01.T01:CDS
TTCAAAGCACGCCCTGAAGC+TGG 0.470944 3:+98383453 MsG0380017604.01.T01:CDS
AGGAGAAACAATCAGAGCTT+AGG 0.472437 3:+98387042 MsG0380017604.01.T01:CDS
CTGAAACTGCATCATTGTCT+TGG 0.475503 3:+98387237 MsG0380017604.01.T01:three_prime_UTR
ACGGTTTCATCGAAGACATC+TGG 0.476438 3:+98383532 MsG0380017604.01.T01:CDS
TTTATCCCTAAATCACAATT+GGG 0.484561 3:-98387285 None:intergenic
TTTAAAGAAAACTGCTTCGA+TGG 0.487046 3:+98385185 MsG0380017604.01.T01:CDS
TATAACTTTGCTTGTGACAA+TGG 0.488259 3:+98387380 MsG0380017604.01.T01:three_prime_UTR
CTAGTCTTTCTATTTCCTCA+CGG 0.488887 3:-98387016 None:intergenic
TGGTGTAATCGCCAGCTTCA+GGG 0.491316 3:-98383464 None:intergenic
AAGCAAATCATTCCAGGAAG+TGG 0.495884 3:+98387124 MsG0380017604.01.T01:CDS
TTGATGTTGTTTACACTCCC+TGG 0.498834 3:+98385157 MsG0380017604.01.T01:CDS
GCTGATCTTGTTATCTATGC+GGG 0.510394 3:+98385650 MsG0380017604.01.T01:intron
TGCAGTTTCAGATTCCAGTT+GGG 0.515730 3:-98387225 None:intergenic
AACGAGGAGCTCATCAAATA+CGG 0.524376 3:+98383513 MsG0380017604.01.T01:CDS
TCGATGGACGTTGGTCAAGT+TGG 0.525188 3:+98385201 MsG0380017604.01.T01:CDS
ATCATTCCAGGAAGTGGAGG+AGG 0.526776 3:+98387130 MsG0380017604.01.T01:CDS
GGAGGATTTCATGTAAACAT+TGG 0.527466 3:+98387148 MsG0380017604.01.T01:exon
GGAGAATATTAAATAGGGAG+GGG 0.530404 3:+98387308 MsG0380017604.01.T01:three_prime_UTR
ATGCAGTTTCAGATTCCAGT+TGG 0.535743 3:-98387226 None:intergenic
AGGAGAATATTAAATAGGGA+GGG 0.537963 3:+98387307 MsG0380017604.01.T01:three_prime_UTR
CCAGTTGGGTTATTTAAACA+TGG 0.539792 3:-98387211 None:intergenic
AATTGGGTACACACACCACT+TGG 0.544733 3:-98387269 None:intergenic
CTTGTCAAGACCCATGAAGA+TGG 0.559047 3:-98383484 None:intergenic
AAGGAGAATATTAAATAGGG+AGG 0.563329 3:+98387306 MsG0380017604.01.T01:three_prime_UTR
GGCGATTACACCATCTTCAT+GGG 0.565091 3:+98383474 MsG0380017604.01.T01:CDS
TTAACTATGCGAAATTATCA+GGG 0.568132 3:+98387510 MsG0380017604.01.T01:three_prime_UTR
ATCAGAGCTTAGGAGCTACA+AGG 0.570116 3:+98387052 MsG0380017604.01.T01:CDS
GAAAGAAAGCCTGATTTGAA+AGG 0.588249 3:+98385453 MsG0380017604.01.T01:CDS
TTGGCTTATAGACAGATGAC+TGG 0.592804 3:+98387174 MsG0380017604.01.T01:three_prime_UTR
TGTGCAGCCTGACATAAACA+TGG 0.601148 3:-98384515 None:intergenic
AGCTGATCTTGTTATCTATG+CGG 0.605195 3:+98385649 MsG0380017604.01.T01:intron
ACTATTGATGACATGAGTGA+AGG 0.607342 3:+98384546 MsG0380017604.01.T01:CDS
CAAATCATTCCAGGAAGTGG+AGG 0.612983 3:+98387127 MsG0380017604.01.T01:CDS
CTGAAGACATCTTATCAACA+TGG 0.615104 3:-98384491 None:intergenic
CAGGCTAAACAAAACGAAGG+TGG 0.619805 3:+98385431 MsG0380017604.01.T01:CDS
TTAGGTGCGAACTGTGAGAG+TGG 0.624552 3:+98385383 MsG0380017604.01.T01:intron
TCTTGACAAGTTCGAGAACG+AGG 0.634328 3:+98383497 MsG0380017604.01.T01:CDS
TCAGAGCTTAGGAGCTACAA+GGG 0.638922 3:+98387053 MsG0380017604.01.T01:CDS
AAAACTGCTTCGATGGACGT+TGG 0.639922 3:+98385192 MsG0380017604.01.T01:CDS
GCTTATAGACAGATGACTGG+TGG 0.679740 3:+98387177 MsG0380017604.01.T01:three_prime_UTR
GTTTATGTCAGGCTGCACAA+AGG 0.698981 3:+98384519 MsG0380017604.01.T01:CDS
CTGTGTGCAGAAGCGCCGTG+AGG 0.707586 3:+98387001 MsG0380017604.01.T01:intron
GTGCAGCCTGACATAAACAT+GGG 0.715437 3:-98384514 None:intergenic
TCAGGTATATAACCATCACA+AGG 0.717871 3:-98387355 None:intergenic
TAACAGGCTAAACAAAACGA+AGG 0.733246 3:+98385428 MsG0380017604.01.T01:CDS
CTGCTGCTGAAAGAGCTGAG+AGG 0.735071 3:+98385705 MsG0380017604.01.T01:CDS
TCTTGGTTAAGGAAACCAAG+TGG 0.738141 3:+98387254 MsG0380017604.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAGGAGAATATTAAATA+GGG + Chr3:98387303-98387322 MsG0380017604.01.T01:three_prime_UTR 15.0%
!! ATGTTAAAAAAAACCTATAA+AGG - Chr3:98385508-98385527 None:intergenic 15.0%
!! CATTTAATTAATGATTGAAT+CGG + Chr3:98384455-98384474 MsG0380017604.01.T01:intron 15.0%
!!! CATTTATGATTAGAATTTTA+TGG + Chr3:98385525-98385544 MsG0380017604.01.T01:intron 15.0%
!! AACTACTGCAAAAAAAAAAA+AGG - Chr3:98385300-98385319 None:intergenic 20.0%
!! AATTTGTCATAAGCTTAAAA+AGG - Chr3:98384924-98384943 None:intergenic 20.0%
!! ATAAACAGATAGAAAATACT+AGG + Chr3:98386228-98386247 MsG0380017604.01.T01:intron 20.0%
!! ATTTGTCATAAGCTTAAAAA+GGG - Chr3:98384923-98384942 None:intergenic 20.0%
!! CTTGAAAGAATACATAAAAT+TGG - Chr3:98384681-98384700 None:intergenic 20.0%
!! GATAAAGGAGAATATTAAAT+AGG + Chr3:98387302-98387321 MsG0380017604.01.T01:three_prime_UTR 20.0%
!! GTTCAAATGATATTCTTATT+TGG + Chr3:98384367-98384386 MsG0380017604.01.T01:intron 20.0%
!! TAATTTCAACTTATACAAGA+AGG - Chr3:98384846-98384865 None:intergenic 20.0%
!!! ACCTTTTTTTTCTTTATTCA+TGG + Chr3:98385113-98385132 MsG0380017604.01.T01:intron 20.0%
!!! ATAATTTTATGAGTCTTGTT+AGG + Chr3:98387452-98387471 MsG0380017604.01.T01:three_prime_UTR 20.0%
!!! ATTTTTACATTAGATTACTC+AGG + Chr3:98386025-98386044 MsG0380017604.01.T01:intron 20.0%
!!! TTTTTTCAAATAAGATGACA+TGG - Chr3:98384008-98384027 None:intergenic 20.0%
!!! TTTTTTTTTTTGCAGTAGTT+GGG + Chr3:98385300-98385319 MsG0380017604.01.T01:intron 20.0%
!!! TTTTTTTTTTTTGCAGTAGT+TGG + Chr3:98385299-98385318 MsG0380017604.01.T01:intron 20.0%
! AAAAAAAACCTATAAAGGCA+AGG - Chr3:98385503-98385522 None:intergenic 25.0%
! AAAGATATTTCATTGTTAGC+AGG - Chr3:98386585-98386604 None:intergenic 25.0%
! AATTCATGAAATTGGCAAAT+AGG - Chr3:98383576-98383595 None:intergenic 25.0%
! AGATAAATGAGATTGTTAAC+AGG + Chr3:98385412-98385431 MsG0380017604.01.T01:CDS 25.0%
! ATTTCAGTTGCATTTATAAC+TGG + Chr3:98384710-98384729 MsG0380017604.01.T01:intron 25.0%
! CAAAATCATAAATCAGACTA+AGG - Chr3:98383649-98383668 None:intergenic 25.0%
! GAAGAAGAAATTCATGAAAT+TGG - Chr3:98383584-98383603 None:intergenic 25.0%
! GCCATGAATAAAGAAAAAAA+AGG - Chr3:98385117-98385136 None:intergenic 25.0%
! TAAAACCTAGTATGAAAACT+AGG - Chr3:98385020-98385039 None:intergenic 25.0%
! TAAGTTAACAGTATATCATG+AGG - Chr3:98385948-98385967 None:intergenic 25.0%
! TATATTGTGCTTAGATACTT+TGG - Chr3:98385796-98385815 None:intergenic 25.0%
! TATCTGTTTATTTCAGCATT+GGG - Chr3:98386219-98386238 None:intergenic 25.0%
! TCACAAATATAACATCCTAA+AGG - Chr3:98386823-98386842 None:intergenic 25.0%
! TGAACTTTGTTAAGAATTTG+AGG + Chr3:98386840-98386859 MsG0380017604.01.T01:intron 25.0%
! TTAACTATGCGAAATTATCA+GGG + Chr3:98387510-98387529 MsG0380017604.01.T01:three_prime_UTR 25.0%
! TTATGAGTTTGACAATGATA+TGG - Chr3:98386282-98386301 None:intergenic 25.0%
! TTGATTGAATTTGTAGTGAT+TGG - Chr3:98384078-98384097 None:intergenic 25.0%
! TTTATAACTGGAAATCTGAA+AGG + Chr3:98384722-98384741 MsG0380017604.01.T01:intron 25.0%
! TTTATCCCTAAATCACAATT+GGG - Chr3:98387288-98387307 None:intergenic 25.0%
! TTTGTTAAGAATTTGAGGAT+CGG + Chr3:98386845-98386864 MsG0380017604.01.T01:intron 25.0%
!! AGATTTAGAAATTTTGCATC+AGG - Chr3:98384329-98384348 None:intergenic 25.0%
!! ATTTAGAAATTTTGCATCAG+GGG - Chr3:98384327-98384346 None:intergenic 25.0%
!! GATTTAGAAATTTTGCATCA+GGG - Chr3:98384328-98384347 None:intergenic 25.0%
!! GCTTATGACAAATTTTTCTT+AGG + Chr3:98384930-98384949 MsG0380017604.01.T01:intron 25.0%
!! TCTTTAGAAACTAGGATATT+GGG + Chr3:98383714-98383733 MsG0380017604.01.T01:intron 25.0%
!! TTAGAATTTTATGGATGAAG+AGG + Chr3:98385534-98385553 MsG0380017604.01.T01:intron 25.0%
!! TTCATGTAAACATTGGTTAT+TGG + Chr3:98387155-98387174 MsG0380017604.01.T01:exon 25.0%
!! TTTTATTAGATCTTGACCAA+TGG + Chr3:98386318-98386337 MsG0380017604.01.T01:intron 25.0%
!!! AGGTTTAAACTTTTGCTTTT+AGG + Chr3:98387481-98387500 MsG0380017604.01.T01:three_prime_UTR 25.0%
!!! GAAGATATTTCATTTTTAGC+AGG - Chr3:98386897-98386916 None:intergenic 25.0%
!!! TTTTTTCTTTATTCATGGCA+GGG + Chr3:98385118-98385137 MsG0380017604.01.T01:intron 25.0%
!!! TTTTTTTCTTTATTCATGGC+AGG + Chr3:98385117-98385136 MsG0380017604.01.T01:intron 25.0%
!!! TTTTTTTTTTGCAGTAGTTG+GGG + Chr3:98385301-98385320 MsG0380017604.01.T01:intron 25.0%
AACAACTAGAATAAGAACAC+TGG - Chr3:98386195-98386214 None:intergenic 30.0%
AAGGAGAATATTAAATAGGG+AGG + Chr3:98387306-98387325 MsG0380017604.01.T01:three_prime_UTR 30.0%
AATAATACCATGGCTATGAT+TGG + Chr3:98383823-98383842 MsG0380017604.01.T01:intron 30.0%
ACAATACATTGTTGTATACC+TGG - Chr3:98385898-98385917 None:intergenic 30.0%
AGGAGAATATTAAATAGGGA+GGG + Chr3:98387307-98387326 MsG0380017604.01.T01:three_prime_UTR 30.0%
ATCACTAACAGCACAAAATT+AGG - Chr3:98385092-98385111 None:intergenic 30.0%
ATGTATTGTCACATACATCA+TGG + Chr3:98385909-98385928 MsG0380017604.01.T01:intron 30.0%
CAATTGTGATTTAGGGATAA+AGG + Chr3:98387287-98387306 MsG0380017604.01.T01:three_prime_UTR 30.0%
CACAAGCAAAGTTATAAATC+AGG - Chr3:98387376-98387395 None:intergenic 30.0%
CACGTAAACATAGTTATGTT+TGG - Chr3:98384190-98384209 None:intergenic 30.0%
CACTTTAGACTATCATTATC+TGG + Chr3:98385348-98385367 MsG0380017604.01.T01:intron 30.0%
CTATCTGTTTATTTCAGCAT+TGG - Chr3:98386220-98386239 None:intergenic 30.0%
CTTTATCCCTAAATCACAAT+TGG - Chr3:98387289-98387308 None:intergenic 30.0%
GAAGCTATTGTTCAAAAAAC+TGG - Chr3:98384821-98384840 None:intergenic 30.0%
GGAAATAGAAAGACTAGAAA+AGG + Chr3:98387022-98387041 MsG0380017604.01.T01:CDS 30.0%
GTAGTGATTGGTAAAATTAG+CGG - Chr3:98384066-98384085 None:intergenic 30.0%
GTCAAAGCAAATTCAATTCA+AGG + Chr3:98384594-98384613 MsG0380017604.01.T01:CDS 30.0%
GTTAACTATGCGAAATTATC+AGG + Chr3:98387509-98387528 MsG0380017604.01.T01:three_prime_UTR 30.0%
TACAATAGCAGATAGTTGAT+AGG - Chr3:98384165-98384184 None:intergenic 30.0%
TATAACTTTGCTTGTGACAA+TGG + Chr3:98387380-98387399 MsG0380017604.01.T01:three_prime_UTR 30.0%
TATTAGTCACCTTTCAAATC+AGG - Chr3:98385465-98385484 None:intergenic 30.0%
TATTCTTTCCTTGCCTTTAT+AGG + Chr3:98385492-98385511 MsG0380017604.01.T01:intron 30.0%
TGAAATTGGCAAATAGGAAA+TGG - Chr3:98383570-98383589 None:intergenic 30.0%
TGGGATTAGACTAATTACTT+TGG + Chr3:98383733-98383752 MsG0380017604.01.T01:intron 30.0%
TTGTCATATATGAGCTTATC+TGG - Chr3:98383854-98383873 None:intergenic 30.0%
TTGTTAAGAATTTGAGGATC+GGG + Chr3:98386846-98386865 MsG0380017604.01.T01:intron 30.0%
TTTAAAGAAAACTGCTTCGA+TGG + Chr3:98385185-98385204 MsG0380017604.01.T01:CDS 30.0%
! AGTTTTCTTTAAATTGGACC+AGG - Chr3:98385178-98385197 None:intergenic 30.0%
! CGAAGCAGTTTTCTTTAAAT+TGG - Chr3:98385184-98385203 None:intergenic 30.0%
! CGGTTATTTCAATAATACCA+TGG + Chr3:98383813-98383832 MsG0380017604.01.T01:intron 30.0%
! GTCTTTAGAAACTAGGATAT+TGG + Chr3:98383713-98383732 MsG0380017604.01.T01:intron 30.0%
! GTTTTCTTTAAATTGGACCA+GGG - Chr3:98385177-98385196 None:intergenic 30.0%
! TGGTTTTCACAACTCAAAAA+TGG + Chr3:98385221-98385240 MsG0380017604.01.T01:CDS 30.0%
! TTTCAGTGTCTTTAGAAACT+AGG + Chr3:98383706-98383725 MsG0380017604.01.T01:intron 30.0%
! TTTGTATCTTGTTGTCCTTT+AGG + Chr3:98386805-98386824 MsG0380017604.01.T01:intron 30.0%
!! ATTTAAGTTTTCCTATGTCC+TGG + Chr3:98386444-98386463 MsG0380017604.01.T01:intron 30.0%
!! TTACTTTGGTGATGTTTATG+TGG + Chr3:98383747-98383766 MsG0380017604.01.T01:intron 30.0%
!! TTTCCATCTTGTTGTTCTTT+AGG + Chr3:98386493-98386512 MsG0380017604.01.T01:intron 30.0%
!!! AAATGGTCTGTTTTTACACT+TGG + Chr3:98385238-98385257 MsG0380017604.01.T01:intron 30.0%
AACAGCACAAAATTAGGCTT+TGG - Chr3:98385086-98385105 None:intergenic 35.0%
ACCGAAAATTCCATATTGCA+GGG - Chr3:98384237-98384256 None:intergenic 35.0%
ACTAAATGCCAATTCAAACC+AGG + Chr3:98384994-98385013 MsG0380017604.01.T01:intron 35.0%
ACTCGTGAGAGAAACAAAAA+TGG - Chr3:98383898-98383917 None:intergenic 35.0%
ATCGCGATTAATTATTCCTC+TGG + Chr3:98384623-98384642 MsG0380017604.01.T01:intron 35.0%
ATCTAGCCATTTAGTCATTG+TGG + Chr3:98385587-98385606 MsG0380017604.01.T01:intron 35.0%
CATCCTAAAGAACAACAAGA+TGG - Chr3:98386499-98386518 None:intergenic 35.0%
CCAGTTGGGTTATTTAAACA+TGG - Chr3:98387214-98387233 None:intergenic 35.0%
CCATGTTTAAATAACCCAAC+TGG + Chr3:98387211-98387230 MsG0380017604.01.T01:three_prime_UTR 35.0%
CTGAAGACATCTTATCAACA+TGG - Chr3:98384494-98384513 None:intergenic 35.0%
GAATACATAAAATTGGCCCT+TGG - Chr3:98384674-98384693 None:intergenic 35.0%
GACACTGAAACAAAACGATT+TGG - Chr3:98383696-98383715 None:intergenic 35.0%
GGAGAATATTAAATAGGGAG+GGG + Chr3:98387308-98387327 MsG0380017604.01.T01:three_prime_UTR 35.0%
GGAGGATTTCATGTAAACAT+TGG + Chr3:98387148-98387167 MsG0380017604.01.T01:exon 35.0%
GGCAAATAGGAAATGGAATT+AGG - Chr3:98383563-98383582 None:intergenic 35.0%
GTGGTGTCTAATGTACAATA+TGG + Chr3:98385606-98385625 MsG0380017604.01.T01:intron 35.0%
GTGTACCCAATTGTGATTTA+GGG + Chr3:98387280-98387299 MsG0380017604.01.T01:three_prime_UTR 35.0%
TAACAGGCTAAACAAAACGA+AGG + Chr3:98385428-98385447 MsG0380017604.01.T01:CDS 35.0%
TAGACACCACAATGACTAAA+TGG - Chr3:98385596-98385615 None:intergenic 35.0%
TCAGCTGAGTCGAATTAAAT+TGG - Chr3:98385635-98385654 None:intergenic 35.0%
TCAGGTATATAACCATCACA+AGG - Chr3:98387358-98387377 None:intergenic 35.0%
TGACATGAGTGAAGGTTTAT+TGG + Chr3:98384554-98384573 MsG0380017604.01.T01:CDS 35.0%
TGTGTACCCAATTGTGATTT+AGG + Chr3:98387279-98387298 MsG0380017604.01.T01:three_prime_UTR 35.0%
! ACTATTGATGACATGAGTGA+AGG + Chr3:98384546-98384565 MsG0380017604.01.T01:CDS 35.0%
! AGCTGATCTTGTTATCTATG+CGG + Chr3:98385649-98385668 MsG0380017604.01.T01:intron 35.0%
! AGTTTTTAACCCCTGCAATA+TGG + Chr3:98384224-98384243 MsG0380017604.01.T01:intron 35.0%
! CTAGTCTTTCTATTTCCTCA+CGG - Chr3:98387019-98387038 None:intergenic 35.0%
! GAAAGAAAGCCTGATTTGAA+AGG + Chr3:98385453-98385472 MsG0380017604.01.T01:CDS 35.0%
! TGATTGAATCGGTCTTTTGT+AGG + Chr3:98384466-98384485 MsG0380017604.01.T01:intron 35.0%
! TTATCTTTTCCTCTGTCCTA+AGG + Chr3:98386758-98386777 MsG0380017604.01.T01:intron 35.0%
!! GTTGATAGGCTAGCTTATAA+CGG - Chr3:98384151-98384170 None:intergenic 35.0%
!! TTGGTTTTCATACCTTGTGA+TGG + Chr3:98387343-98387362 MsG0380017604.01.T01:three_prime_UTR 35.0%
!!! ATCTGGCTTTTGTGCATTTT+AGG + Chr3:98385365-98385384 MsG0380017604.01.T01:intron 35.0%
!!! CAGGCTAGTGATTATTTTAG+AGG + Chr3:98386044-98386063 MsG0380017604.01.T01:intron 35.0%
AAATCTGTACACTTGCATCC+AGG + Chr3:98385877-98385896 MsG0380017604.01.T01:intron 40.0%
AACGAGGAGCTCATCAAATA+CGG + Chr3:98383513-98383532 MsG0380017604.01.T01:CDS 40.0%
AAGAAGACACCATGAACCTT+AGG - Chr3:98386872-98386891 None:intergenic 40.0%
AAGCAAATCATTCCAGGAAG+TGG + Chr3:98387124-98387143 MsG0380017604.01.T01:CDS 40.0%
AGGAGAAACAATCAGAGCTT+AGG + Chr3:98387042-98387061 MsG0380017604.01.T01:CDS 40.0%
ATGCAGTTTCAGATTCCAGT+TGG - Chr3:98387229-98387248 None:intergenic 40.0%
CCGAAAATTCCATATTGCAG+GGG - Chr3:98384236-98384255 None:intergenic 40.0%
CTGAAACTGCATCATTGTCT+TGG + Chr3:98387237-98387256 MsG0380017604.01.T01:three_prime_UTR 40.0%
CTGCATCATTGTCTTGGTTA+AGG + Chr3:98387243-98387262 MsG0380017604.01.T01:three_prime_UTR 40.0%
GACCGAAAATTCCATATTGC+AGG - Chr3:98384238-98384257 None:intergenic 40.0%
GGTTGTGCTTCGAAACAAAT+TGG + Chr3:98386339-98386358 MsG0380017604.01.T01:intron 40.0%
GTTGCGATTCAATGATTCTG+CGG + Chr3:98383793-98383812 MsG0380017604.01.T01:intron 40.0%
TATCCGCTTAGTTGACCTAA+GGG + Chr3:98384648-98384667 MsG0380017604.01.T01:intron 40.0%
TCCAACAAAGACATTGCTTC+AGG + Chr3:98387101-98387120 MsG0380017604.01.T01:CDS 40.0%
TCCTGAAGCAATGTCTTTGT+TGG - Chr3:98387105-98387124 None:intergenic 40.0%
TCTTCCAGTATAGATCTCGA+GGG + Chr3:98384275-98384294 MsG0380017604.01.T01:intron 40.0%
TCTTGGTTAAGGAAACCAAG+TGG + Chr3:98387254-98387273 MsG0380017604.01.T01:three_prime_UTR 40.0%
TGCAGTTTCAGATTCCAGTT+GGG - Chr3:98387228-98387247 None:intergenic 40.0%
TGTTTATGTGGCTCATGGTT+AGG + Chr3:98383759-98383778 MsG0380017604.01.T01:intron 40.0%
TTCAGGAAGCAAATCATTCC+AGG + Chr3:98387118-98387137 MsG0380017604.01.T01:CDS 40.0%
TTGGCTTATAGACAGATGAC+TGG + Chr3:98387174-98387193 MsG0380017604.01.T01:three_prime_UTR 40.0%
TTGTTTCGAAGCACAACCAT+TGG - Chr3:98386337-98386356 None:intergenic 40.0%
! AAACTAGGCCTGGTTTGAAT+TGG - Chr3:98385005-98385024 None:intergenic 40.0%
! CCCCTGCAATATGGAATTTT+CGG + Chr3:98384233-98384252 MsG0380017604.01.T01:intron 40.0%
! GCTGATCTTGTTATCTATGC+GGG + Chr3:98385650-98385669 MsG0380017604.01.T01:intron 40.0%
! TTGATGTTGTTTACACTCCC+TGG + Chr3:98385157-98385176 MsG0380017604.01.T01:CDS 40.0%
!! GCACAAAATTAGGCTTTGGA+AGG - Chr3:98385082-98385101 None:intergenic 40.0%
!! TCTGAAAGGCTAAGAGCATT+TGG + Chr3:98384736-98384755 MsG0380017604.01.T01:intron 40.0%
!!! GAATTTTAGAATCCAGCCCA+AGG + Chr3:98386541-98386560 MsG0380017604.01.T01:intron 40.0%
!!! TTTTTTTGCAGTAGTTGGGG+TGG + Chr3:98385304-98385323 MsG0380017604.01.T01:intron 40.0%
AAAACTGCTTCGATGGACGT+TGG + Chr3:98385192-98385211 MsG0380017604.01.T01:CDS 45.0%
AAGAAGACACCGTGAACCTT+GGG - Chr3:98386560-98386579 None:intergenic 45.0%
AAGTACTCAAGCAGTGCCTT+AGG - Chr3:98386777-98386796 None:intergenic 45.0%
AATTGGGTACACACACCACT+TGG - Chr3:98387272-98387291 None:intergenic 45.0%
ACGGTTTCATCGAAGACATC+TGG + Chr3:98383532-98383551 MsG0380017604.01.T01:CDS 45.0%
ATCAGAGCTTAGGAGCTACA+AGG + Chr3:98387052-98387071 MsG0380017604.01.T01:CDS 45.0%
CAAATCATTCCAGGAAGTGG+AGG + Chr3:98387127-98387146 MsG0380017604.01.T01:CDS 45.0%
CAGGCTAAACAAAACGAAGG+TGG + Chr3:98385431-98385450 MsG0380017604.01.T01:CDS 45.0%
CATGGCAGGTAAAAAGACAG+CGG - Chr3:98386388-98386407 None:intergenic 45.0%
CCTAGTATGAAAACTAGGCC+TGG - Chr3:98385015-98385034 None:intergenic 45.0%
CTATCCGCTTAGTTGACCTA+AGG + Chr3:98384647-98384666 MsG0380017604.01.T01:intron 45.0%
CTGCTATGTTGCATTCTCCT+CGG + Chr3:98386711-98386730 MsG0380017604.01.T01:intron 45.0%
CTTCAGCCCATGTTTATGTC+AGG + Chr3:98384508-98384527 MsG0380017604.01.T01:CDS 45.0%
CTTCCAGTATAGATCTCGAG+GGG + Chr3:98384276-98384295 MsG0380017604.01.T01:intron 45.0%
CTTGTCAAGACCCATGAAGA+TGG - Chr3:98383487-98383506 None:intergenic 45.0%
GCCATGTTGCATTCTCTTCA+GGG + Chr3:98386402-98386421 MsG0380017604.01.T01:intron 45.0%
GCTTATAGACAGATGACTGG+TGG + Chr3:98387177-98387196 MsG0380017604.01.T01:three_prime_UTR 45.0%
GGCGATTACACCATCTTCAT+GGG + Chr3:98383474-98383493 MsG0380017604.01.T01:CDS 45.0%
GGTGATGTTTATGTGGCTCA+TGG + Chr3:98383754-98383773 MsG0380017604.01.T01:intron 45.0%
GTCTTCCAGTATAGATCTCG+AGG + Chr3:98384274-98384293 MsG0380017604.01.T01:intron 45.0%
GTGCAGCCTGACATAAACAT+GGG - Chr3:98384517-98384536 None:intergenic 45.0%
GTTTATGTCAGGCTGCACAA+AGG + Chr3:98384519-98384538 MsG0380017604.01.T01:CDS 45.0%
TAGGAGCTACAAGGGTTTGA+TGG + Chr3:98387061-98387080 MsG0380017604.01.T01:CDS 45.0%
TAGTAGACAATTATGCCCCG+AGG - Chr3:98386731-98386750 None:intergenic 45.0%
TCAGAGCTTAGGAGCTACAA+GGG + Chr3:98387053-98387072 MsG0380017604.01.T01:CDS 45.0%
TCTTGACAAGTTCGAGAACG+AGG + Chr3:98383497-98383516 MsG0380017604.01.T01:CDS 45.0%
TGAAGAGAATGCAACATGGC+AGG - Chr3:98386402-98386421 None:intergenic 45.0%
TGCCATGTTGCATTCTCTTC+AGG + Chr3:98386401-98386420 MsG0380017604.01.T01:intron 45.0%
TGCTATGTTGCATTCTCCTC+GGG + Chr3:98386712-98386731 MsG0380017604.01.T01:intron 45.0%
TGGCGATTACACCATCTTCA+TGG + Chr3:98383473-98383492 MsG0380017604.01.T01:CDS 45.0%
TGTGCAGCCTGACATAAACA+TGG - Chr3:98384518-98384537 None:intergenic 45.0%
TTAGTTGACCTAAGGGCCAA+GGG + Chr3:98384655-98384674 MsG0380017604.01.T01:intron 45.0%
!! CCAGGCCTAGTTTTCATACT+AGG + Chr3:98385012-98385031 MsG0380017604.01.T01:intron 45.0%
!! TGAGTCTTGTTAGGCTTGTC+AGG + Chr3:98387461-98387480 MsG0380017604.01.T01:three_prime_UTR 45.0%
AAAATTGGCCCTTGGCCCTT+AGG - Chr3:98384666-98384685 None:intergenic 50.0%
AAGAACTCAAGCAGTGCACC+AGG - Chr3:98386465-98386484 None:intergenic 50.0%
AAGCCCCTCGAGATCTATAC+TGG - Chr3:98384282-98384301 None:intergenic 50.0%
AGAATCCAGCCCAAGGTTCA+CGG + Chr3:98386548-98386567 MsG0380017604.01.T01:intron 50.0%
ATCATTCCAGGAAGTGGAGG+AGG + Chr3:98387130-98387149 MsG0380017604.01.T01:CDS 50.0%
ATGGTGTAATCGCCAGCTTC+AGG - Chr3:98383468-98383487 None:intergenic 50.0%
CAACTAAGCGGATAGACCAG+AGG - Chr3:98384642-98384661 None:intergenic 50.0%
CTTAGTTGACCTAAGGGCCA+AGG + Chr3:98384654-98384673 MsG0380017604.01.T01:intron 50.0%
GAAGAAGACACCGTGAACCT+TGG - Chr3:98386561-98386580 None:intergenic 50.0%
GAATTTGAGGATCGGGCCTA+AGG + Chr3:98386853-98386872 MsG0380017604.01.T01:intron 50.0%
GCCCTGAAGAGAATGCAACA+TGG - Chr3:98386406-98386425 None:intergenic 50.0%
GCTATGTTGCATTCTCCTCG+GGG + Chr3:98386713-98386732 MsG0380017604.01.T01:intron 50.0%
GGAGGGGAGAATGCAATGAT+TGG + Chr3:98387324-98387343 MsG0380017604.01.T01:three_prime_UTR 50.0%
GGCATTGCCAATCATAGCCA+TGG - Chr3:98383833-98383852 None:intergenic 50.0%
TCGATGGACGTTGGTCAAGT+TGG + Chr3:98385201-98385220 MsG0380017604.01.T01:CDS 50.0%
TGAAATCCTCCTCCACTTCC+TGG - Chr3:98387139-98387158 None:intergenic 50.0%
TGGCCCTTAGGTCAACTAAG+CGG - Chr3:98384654-98384673 None:intergenic 50.0%
TGGTGTAATCGCCAGCTTCA+GGG - Chr3:98383467-98383486 None:intergenic 50.0%
TTAGGTGCGAACTGTGAGAG+TGG + Chr3:98385383-98385402 MsG0380017604.01.T01:intron 50.0%
AGGATCGGGCCTAAGGTTCA+TGG + Chr3:98386860-98386879 MsG0380017604.01.T01:intron 55.0%
CAAGCAGTGCACCAGGACAT+AGG - Chr3:98386458-98386477 None:intergenic 55.0%
CAAGCAGTGCCTTAGGACAG+AGG - Chr3:98386770-98386789 None:intergenic 55.0%
CTGCTGCTGAAAGAGCTGAG+AGG + Chr3:98385705-98385724 MsG0380017604.01.T01:CDS 55.0%
TTCAAAGCACGCCCTGAAGC+TGG + Chr3:98383453-98383472 MsG0380017604.01.T01:CDS 55.0%
TTGCAGTAGTTGGGGTGGCT+GGG + Chr3:98385309-98385328 MsG0380017604.01.T01:intron 55.0%
TTTGCAGTAGTTGGGGTGGC+TGG + Chr3:98385308-98385327 MsG0380017604.01.T01:intron 55.0%
AGACACCGTGAACCTTGGGC+TGG - Chr3:98386556-98386575 None:intergenic 60.0%
! CTCGAGGGGCTTGCTCTTTC+TGG + Chr3:98384290-98384309 MsG0380017604.01.T01:intron 60.0%
!! CTGTGTGCAGAAGCGCCGTG+AGG + Chr3:98387001-98387020 MsG0380017604.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 98383425 98387556 98383425 ID=MsG0380017604.01;Name=MsG0380017604.01
Chr3 mRNA 98383425 98387556 98383425 ID=MsG0380017604.01.T01;Parent=MsG0380017604.01;Name=MsG0380017604.01.T01;_AED=0.47;_eAED=0.48;_QI=16|0.8|0.83|1|1|1|6|393|227
Chr3 exon 98383425 98383553 98383425 ID=MsG0380017604.01.T01:exon:13411;Parent=MsG0380017604.01.T01
Chr3 exon 98384488 98384615 98384488 ID=MsG0380017604.01.T01:exon:13412;Parent=MsG0380017604.01.T01
Chr3 exon 98385139 98385242 98385139 ID=MsG0380017604.01.T01:exon:13413;Parent=MsG0380017604.01.T01
Chr3 exon 98385387 98385474 98385387 ID=MsG0380017604.01.T01:exon:13414;Parent=MsG0380017604.01.T01
Chr3 exon 98385651 98385748 98385651 ID=MsG0380017604.01.T01:exon:13415;Parent=MsG0380017604.01.T01
Chr3 exon 98387011 98387556 98387011 ID=MsG0380017604.01.T01:exon:13416;Parent=MsG0380017604.01.T01
Chr3 five_prime_UTR 98383425 98383440 98383425 ID=MsG0380017604.01.T01:five_prime_utr;Parent=MsG0380017604.01.T01
Chr3 CDS 98383441 98383553 98383441 ID=MsG0380017604.01.T01:cds;Parent=MsG0380017604.01.T01
Chr3 CDS 98384488 98384615 98384488 ID=MsG0380017604.01.T01:cds;Parent=MsG0380017604.01.T01
Chr3 CDS 98385139 98385242 98385139 ID=MsG0380017604.01.T01:cds;Parent=MsG0380017604.01.T01
Chr3 CDS 98385387 98385474 98385387 ID=MsG0380017604.01.T01:cds;Parent=MsG0380017604.01.T01
Chr3 CDS 98385651 98385748 98385651 ID=MsG0380017604.01.T01:cds;Parent=MsG0380017604.01.T01
Chr3 CDS 98387011 98387163 98387011 ID=MsG0380017604.01.T01:cds;Parent=MsG0380017604.01.T01
Chr3 three_prime_UTR 98387164 98387556 98387164 ID=MsG0380017604.01.T01:three_prime_utr;Parent=MsG0380017604.01.T01
Gene Sequence

>MsG0380017604.01.T01

ATGGTGTTCTACTTCAAAGCACGCCCTGAAGCTGGCGATTACACCATCTTCATGGGTCTTGACAAGTTCGAGAACGAGGAGCTCATCAAATACGGTTTCATCGAAGACATCTGGTTCCATGTTGATAAGATGTCTTCAGCCCATGTTTATGTCAGGCTGCACAAAGGTCAAACTATTGATGACATGAGTGAAGGTTTATTGGAAGACTGTGCTCAACTTGTCAAAGCAAATTCAATTCAAGGGAATAAAGTAAACAACGTTGATGTTGTTTACACTCCCTGGTCCAATTTAAAGAAAACTGCTTCGATGGACGTTGGTCAAGTTGGTTTTCACAACTCAAAAATGGTGCGAACTGTGAGAGTGGAGAAGAAGATAAATGAGATTGTTAACAGGCTAAACAAAACGAAGGTGGAAAGAAAGCCTGATTTGAAAGCTGATCTTGTTATCTATGCGGGTATGTGTTCTGCAGCTGAGCGAGAAGCAATTGCTGCTGCTGAAAGAGCTGAGAGGAAACATCAACTGAGAGAAAAAAAGCGCCGTGAGGAAATAGAAAGACTAGAAAAGGAGAAACAATCAGAGCTTAGGAGCTACAAGGGTTTGATGGTCGCAGAAAATATGACATCCAACAAAGACATTGCTTCAGGAAGCAAATCATTCCAGGAAGTGGAGGAGGATTTCATGTAA

Protein sequence

>MsG0380017604.01.T01

MVFYFKARPEAGDYTIFMGLDKFENEELIKYGFIEDIWFHVDKMSSAHVYVRLHKGQTIDDMSEGLLEDCAQLVKANSIQGNKVNNVDVVYTPWSNLKKTASMDVGQVGFHNSKMVRTVRVEKKINEIVNRLNKTKVERKPDLKADLVIYAGMCSAAEREAIAAAERAERKHQLREKKRREEIERLEKEKQSELRSYKGLMVAENMTSNKDIASGSKSFQEVEEDFM*