AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016694.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016694.01.T01 MTR_3g093440 83.747 363 19 2 1 323 45 407 0.0 616
MsG0380016694.01.T01 MTR_3g093440 93.567 171 10 1 353 522 524 694 6.51e-101 321
MsG0380016694.01.T01 MTR_3g452710 31.293 147 81 5 19 159 11 143 2.18e-11 66.6
MsG0380016694.01.T01 MTR_3g452710 30.872 149 83 5 19 161 11 145 3.06e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016694.01.T01 AT1G33400 41.576 368 171 4 1 324 45 412 2.08e-90 294
MsG0380016694.01.T01 AT1G33400 41.040 173 92 2 353 515 525 697 6.25e-36 143
MsG0380016694.01.T01 AT1G33400 41.576 368 171 4 1 324 57 424 4.61e-90 293
MsG0380016694.01.T01 AT1G33400 41.279 172 91 2 353 514 537 708 5.75e-36 143
MsG0380016694.01.T01 AT1G33400 40.598 234 121 4 109 324 13 246 5.31e-47 173
MsG0380016694.01.T01 AT1G33400 41.279 172 91 2 353 514 359 530 2.68e-36 143
MsG0380016694.01.T01 AT2G42810 30.065 153 93 4 19 166 13 156 4.35e-12 68.9
MsG0380016694.01.T01 AT2G42810 30.065 153 93 4 19 166 13 156 4.35e-12 68.9
MsG0380016694.01.T01 AT2G42810 30.065 153 93 4 19 166 13 156 4.35e-12 68.9
MsG0380016694.01.T01 AT2G42810 30.065 153 93 4 19 166 13 156 4.95e-12 68.9
MsG0380016694.01.T01 AT2G42810 30.065 153 93 4 19 166 13 156 5.04e-12 68.9

Find 88 sgRNAs with CRISPR-Local

Find 374 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGCCATTTGAAAGTAAAT+TGG 0.199937 3:+86661851 MsG0380016694.01.T01:CDS
AACACTGCGCCAGAACAATT+TGG 0.217761 3:-86663739 None:intergenic
TTTGCCCACCTGCCTTTATT+TGG 0.225137 3:-86661454 None:intergenic
AGAAACTCAAACAAGCAATT+AGG 0.229319 3:+86658314 MsG0380016694.01.T01:five_prime_UTR
CTCTATATCACAGGTTGTTT+TGG 0.231847 3:+86661949 MsG0380016694.01.T01:CDS
ATATGTCTTAAACATTCTTA+TGG 0.239651 3:+86661902 MsG0380016694.01.T01:CDS
TATGAATAGAAGCGTCATTT+TGG 0.260629 3:-86664060 None:intergenic
TGTTGTTGACAATATTAATT+TGG 0.297699 3:-86658182 None:intergenic
AAGCCTTAATATGCATAAAA+AGG 0.306459 3:+86664152 MsG0380016694.01.T01:CDS
TGGTGTAGAGGAAGAAGATA+TGG 0.318513 3:+86658267 MsG0380016694.01.T01:five_prime_UTR
ACTGCCTTCTGACATAGTTT+TGG 0.338485 3:+86661637 MsG0380016694.01.T01:CDS
AAATTTGCATGCATACAATA+AGG 0.339149 3:+86664453 MsG0380016694.01.T01:CDS
ACCATGCCTCTTCCTTTATC+AGG 0.346989 3:-86660798 None:intergenic
GAAACTCAAACAAGCAATTA+GGG 0.353034 3:+86658315 MsG0380016694.01.T01:five_prime_UTR
ATTGCTTGTTTGAGTTTCTC+TGG 0.360886 3:-86658310 None:intergenic
CACCTGCCTTTATTTGGCAT+TGG 0.370556 3:-86661448 None:intergenic
ACACTGCGCCAGAACAATTT+GGG 0.399716 3:-86663738 None:intergenic
GGCAAAGGAAGAAGAAAGAG+AGG 0.401323 3:+86658227 MsG0380016694.01.T01:five_prime_UTR
TGATATAGAGATTCCATTGA+TGG 0.401639 3:-86661936 None:intergenic
GGAGCTATGCTTGCCATCAA+TGG 0.404119 3:+86661923 MsG0380016694.01.T01:CDS
CTCGCACCAATGCCAAATAA+AGG 0.406668 3:+86661442 MsG0380016694.01.T01:CDS
AGCATATTCAGCAAGATTGT+TGG 0.410224 3:-86661522 None:intergenic
TCAATTTCACCAACTTCAAA+AGG 0.415930 3:-86658742 None:intergenic
TGTGTGAACCCAAATTGTTC+TGG 0.426197 3:+86663730 MsG0380016694.01.T01:CDS
ATGCAGTTCTTACCGTGATC+TGG 0.426263 3:+86664105 MsG0380016694.01.T01:CDS
GCATATTCAGCAAGATTGTT+GGG 0.430584 3:-86661521 None:intergenic
GAATCCAATTTACTTTCAAA+TGG 0.433870 3:-86661855 None:intergenic
GTAGGTCGTTCAAGCAATAA+TGG 0.435815 3:-86661373 None:intergenic
AGATCTCAAAGCGTCTGAAA+TGG 0.439734 3:-86664413 None:intergenic
CCGCCATCTGATGTTTCACC+AGG 0.440375 3:+86660824 MsG0380016694.01.T01:CDS
AATGATTGTGAGCAAAAGAT+TGG 0.447994 3:+86661563 MsG0380016694.01.T01:CDS
GCCTCTTCCTTTATCAGGTA+CGG 0.454469 3:-86660793 None:intergenic
GCATTTCATTGTCAATGTAC+TGG 0.457687 3:+86663661 MsG0380016694.01.T01:CDS
GGAAAGGCAAATATTGCATT+GGG 0.466884 3:+86659486 MsG0380016694.01.T01:CDS
TCTGGCATCAGGCATGGTAT+AGG 0.467429 3:+86659460 MsG0380016694.01.T01:intron
AAACACACCTTTGAATAGCT+TGG 0.472303 3:-86658998 None:intergenic
ACACTTTGCAGCTTTATTTG+AGG 0.485080 3:-86660768 None:intergenic
AGTGTCTCCGTACCTGATAA+AGG 0.493636 3:+86660786 MsG0380016694.01.T01:CDS
AAGAGTGTCGAATCATCAAC+AGG 0.494373 3:+86659546 MsG0380016694.01.T01:CDS
AAATTGTTCTGGCGCAGTGT+TGG 0.499251 3:+86663741 MsG0380016694.01.T01:CDS
ATGTCAGAAGGCAGTACAGC+AGG 0.510667 3:-86661629 None:intergenic
GGCTTTAGATTATTATACTC+AGG 0.514932 3:+86658605 MsG0380016694.01.T01:CDS
GTAGTACGTACCTGGTGAAA+AGG 0.520425 3:-86658402 None:intergenic
CTCTAATGCTGATTATGTCA+AGG 0.527726 3:+86658584 MsG0380016694.01.T01:CDS
TATGAAAACTGTACTTAGGA+TGG 0.528526 3:-86664514 None:intergenic
AGGAAAGGCAAATATTGCAT+TGG 0.532015 3:+86659485 MsG0380016694.01.T01:CDS
AAACAAAGGAAGTGGTGTAG+AGG 0.538339 3:+86658255 MsG0380016694.01.T01:five_prime_UTR
AAGAACGTAATTATCTTCTG+TGG 0.542033 3:-86661489 None:intergenic
CAATGGAATCTCTATATCAC+AGG 0.542199 3:+86661940 MsG0380016694.01.T01:CDS
CACGAGAGGTGGTTTGATGT+TGG 0.542732 3:+86658206 MsG0380016694.01.T01:five_prime_UTR
TTCCCGCACAGAGCATAGCT+AGG 0.547122 3:-86658513 None:intergenic
ATACAAGGAACTCTATCAGC+AGG 0.548739 3:-86661395 None:intergenic
CACCAATGCCAAATAAAGGC+AGG 0.551316 3:+86661446 MsG0380016694.01.T01:CDS
ACCCTAGCTATGCTCTGTGC+GGG 0.563516 3:+86658511 MsG0380016694.01.T01:CDS
TCCGTACCTGATAAAGGAAG+AGG 0.569385 3:+86660792 MsG0380016694.01.T01:CDS
TCCCGCACAGAGCATAGCTA+GGG 0.570994 3:-86658512 None:intergenic
GATATGTCCAAGCTATTCAA+AGG 0.573360 3:+86658991 MsG0380016694.01.T01:CDS
CTGCATTTCAAACAGACTCC+AGG 0.574365 3:-86664088 None:intergenic
ATGAATGTCAAGGAGTGCAT+TGG 0.576376 3:+86661606 MsG0380016694.01.T01:CDS
TTACTTTATCAGCAACAGCT+AGG 0.576576 3:-86663804 None:intergenic
GCTTCTATTCATATTCAACC+TGG 0.579067 3:+86664070 MsG0380016694.01.T01:CDS
AGGTGGTTTGATGTTGGCAA+AGG 0.584111 3:+86658212 MsG0380016694.01.T01:five_prime_UTR
CAATGCCAAATAAAGGCAGG+TGG 0.596184 3:+86661449 MsG0380016694.01.T01:CDS
CCAGCCAAAACTATGTCAGA+AGG 0.604974 3:-86661641 None:intergenic
ATATGGAAATGACAGGCTGC+AGG 0.608699 3:+86664357 MsG0380016694.01.T01:intron
TGAAATATAGGCATTACGAA+AGG 0.609774 3:+86658717 MsG0380016694.01.T01:intron
GTCAACAACAACACGAGAGG+TGG 0.618814 3:+86658195 MsG0380016694.01.T01:five_prime_UTR
GAACATAAACATGAATGTCA+AGG 0.620275 3:+86661596 MsG0380016694.01.T01:CDS
CATTGGTGCGAGCAGTACAA+TGG 0.620389 3:-86661431 None:intergenic
ACCTGATAAAGGAAGAGGCA+TGG 0.627081 3:+86660797 MsG0380016694.01.T01:CDS
GAAGATATGGAGACTCTGAA+AGG 0.628550 3:+86658280 MsG0380016694.01.T01:five_prime_UTR
GCAAAGGAAGAAGAAAGAGA+GGG 0.630138 3:+86658228 MsG0380016694.01.T01:five_prime_UTR
GTGTCGAATCATCAACAGGA+GGG 0.630754 3:+86659550 MsG0380016694.01.T01:CDS
GGTATTGAACACGATATACA+AGG 0.636863 3:-86661410 None:intergenic
CACGTGAAGACTCCAGATCA+CGG 0.641430 3:-86664117 None:intergenic
GCGTTGAAATATAAGCAGCT+TGG 0.647283 3:+86658549 MsG0380016694.01.T01:CDS
ATACAATAAGGTTATTGCAG+AGG 0.648948 3:+86664465 MsG0380016694.01.T01:CDS
GACCCTAGCTATGCTCTGTG+CGG 0.649554 3:+86658510 MsG0380016694.01.T01:CDS
AATGCCAAATAAAGGCAGGT+GGG 0.655407 3:+86661450 MsG0380016694.01.T01:CDS
AAGGAACTCTATCAGCAGGT+AGG 0.661361 3:-86661391 None:intergenic
CATCAGGCATGGTATAGGAG+AGG 0.668519 3:+86659465 MsG0380016694.01.T01:intron
GAACCTGGTGAAACATCAGA+TGG 0.672386 3:-86660827 None:intergenic
TAAGACATATAACAATACAA+TGG 0.672905 3:-86661889 None:intergenic
TCACACAATGAAAAGCATTG+AGG 0.676894 3:-86663714 None:intergenic
ATTGTCAACAACAACACGAG+AGG 0.684594 3:+86658192 MsG0380016694.01.T01:five_prime_UTR
AGTGTCGAATCATCAACAGG+AGG 0.693713 3:+86659549 MsG0380016694.01.T01:CDS
GGCATGGTATAGGAGAGGAA+AGG 0.699336 3:+86659470 MsG0380016694.01.T01:intron
CCTGGTGAAACATCAGATGG+CGG 0.700594 3:-86660824 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAATAAATCAAAACA+TGG + Chr3:86663490-86663509 MsG0380016694.01.T01:intron 10.0%
!!! AATATTTTTTCAATATGATA+GGG + Chr3:86662073-86662092 MsG0380016694.01.T01:intron 10.0%
!! AAAGATTGAAATATTTATGT+CGG + Chr3:86659995-86660014 MsG0380016694.01.T01:intron 15.0%
!! AAATAAACTAAGATTACAAA+AGG - Chr3:86659035-86659054 None:intergenic 15.0%
!! ATTTATCAAAACAAAGTAAT+TGG + Chr3:86659187-86659206 MsG0380016694.01.T01:intron 15.0%
!! TAACAAGTAATAATAATTAC+AGG - Chr3:86662707-86662726 None:intergenic 15.0%
!! TATGATAATTTAGACATTAT+TGG + Chr3:86662436-86662455 MsG0380016694.01.T01:intron 15.0%
!! TTATTAATAGTGAGAAATTA+GGG - Chr3:86658449-86658468 None:intergenic 15.0%
!!! AAAAAATGAAGTGTTTTAAA+GGG - Chr3:86663993-86664012 None:intergenic 15.0%
!!! ATTATTACTTGTTAGTTTTT+TGG + Chr3:86662713-86662732 MsG0380016694.01.T01:intron 15.0%
!!! GAATATTTTTTCAATATGAT+AGG + Chr3:86662072-86662091 MsG0380016694.01.T01:intron 15.0%
!!! TTTTATTTTTTTATGTTGAG+TGG - Chr3:86663478-86663497 None:intergenic 15.0%
!!! TTTTTTTCCTTTGTTTTTTT+GGG + Chr3:86661977-86661996 MsG0380016694.01.T01:CDS 15.0%
!! AAAATGCATAAATATAGAAC+AGG - Chr3:86662400-86662419 None:intergenic 20.0%
!! AATGTCTAAATTATCATAGT+AGG - Chr3:86662434-86662453 None:intergenic 20.0%
!! AATTTAATTCTATAAGGAAG+AGG - Chr3:86660165-86660184 None:intergenic 20.0%
!! ATATGTCTTAAACATTCTTA+TGG + Chr3:86661902-86661921 MsG0380016694.01.T01:CDS 20.0%
!! ATCTTTCATAAATAAATGCA+AGG - Chr3:86660682-86660701 None:intergenic 20.0%
!! ATTAAAAGTGATTATGAATG+TGG - Chr3:86658852-86658871 None:intergenic 20.0%
!! ATTTAATTCTATAAGGAAGA+GGG - Chr3:86660164-86660183 None:intergenic 20.0%
!! ATTTCATAATTAGCACATTT+GGG + Chr3:86662926-86662945 MsG0380016694.01.T01:intron 20.0%
!! CTTAGTTTATTTGTACTATT+AGG + Chr3:86659043-86659062 MsG0380016694.01.T01:intron 20.0%
!! GGATTAATGCTTATAAAATA+TGG - Chr3:86661260-86661279 None:intergenic 20.0%
!! GTGCATAATTTAATTCTATA+AGG - Chr3:86660171-86660190 None:intergenic 20.0%
!! GTTATTAATAGTGAGAAATT+AGG - Chr3:86658450-86658469 None:intergenic 20.0%
!! TAAATATTTCAATCTTTCCT+CGG - Chr3:86659992-86660011 None:intergenic 20.0%
!! TAAGACATATAACAATACAA+TGG - Chr3:86661892-86661911 None:intergenic 20.0%
!! TGTTGTTGACAATATTAATT+TGG - Chr3:86658185-86658204 None:intergenic 20.0%
!!! ACAAAATGCTTTTAGATAAA+TGG + Chr3:86660939-86660958 MsG0380016694.01.T01:intron 20.0%
!!! AGCATATTAGTTTCTTAATA+TGG - Chr3:86660513-86660532 None:intergenic 20.0%
!!! ATTCAATCCTATTTTACATA+TGG + Chr3:86660622-86660641 MsG0380016694.01.T01:intron 20.0%
!!! ATTCATCTTTTAGAAAACTT+TGG - Chr3:86663639-86663658 None:intergenic 20.0%
!!! ATTTTCTCATGCTTAATTTT+GGG - Chr3:86660065-86660084 None:intergenic 20.0%
!!! CTTTTTTTCCTTTGTTTTTT+TGG + Chr3:86661976-86661995 MsG0380016694.01.T01:CDS 20.0%
!!! GAAAAAATGAAGTGTTTTAA+AGG - Chr3:86663994-86664013 None:intergenic 20.0%
!!! GAATTTGCTTTGAATTAATT+GGG - Chr3:86661156-86661175 None:intergenic 20.0%
!!! GCATATTAGTTTCTTAATAT+GGG - Chr3:86660512-86660531 None:intergenic 20.0%
!!! GTTTTTGCAATTTGAAATAT+AGG + Chr3:86658705-86658724 MsG0380016694.01.T01:intron 20.0%
!!! TAGTTCTGAATAATTTTCAA+AGG - Chr3:86664221-86664240 None:intergenic 20.0%
!!! TATTTTCTCATGCTTAATTT+TGG - Chr3:86660066-86660085 None:intergenic 20.0%
!!! TGAATTTGCTTTGAATTAAT+TGG - Chr3:86661157-86661176 None:intergenic 20.0%
!!! TTAAAACACTTCATTTTTTC+AGG + Chr3:86663994-86664013 MsG0380016694.01.T01:intron 20.0%
!!! TTCTCTCTTTTCTTTATTTT+TGG + Chr3:86658670-86658689 MsG0380016694.01.T01:intron 20.0%
!!! TTTTGATAACTTCATTATTC+TGG + Chr3:86659442-86659461 MsG0380016694.01.T01:intron 20.0%
! AAAAAATATTCTGCTACACA+AGG - Chr3:86662063-86662082 None:intergenic 25.0%
! AAAAGGAGAGGAAAAATAAA+TGG - Chr3:86660705-86660724 None:intergenic 25.0%
! AAATTTGCATGCATACAATA+AGG + Chr3:86664453-86664472 MsG0380016694.01.T01:CDS 25.0%
! AAGCCTTAATATGCATAAAA+AGG + Chr3:86664152-86664171 MsG0380016694.01.T01:CDS 25.0%
! AATTAGGGATTTAGTTGAAA+TGG - Chr3:86658434-86658453 None:intergenic 25.0%
! ACCATCTTATTATCTCAAAA+AGG - Chr3:86660722-86660741 None:intergenic 25.0%
! ACTATTGAATAGTTTCCAAT+TGG + Chr3:86664240-86664259 MsG0380016694.01.T01:intron 25.0%
! AGAAAATATGCATGAACATT+TGG - Chr3:86662584-86662603 None:intergenic 25.0%
! AGCTGATAGTAAATATTAGA+TGG + Chr3:86664302-86664321 MsG0380016694.01.T01:intron 25.0%
! ATACATCAATCACTTTAATC+TGG - Chr3:86662208-86662227 None:intergenic 25.0%
! ATAGCAATAGTAGGTAATTA+GGG + Chr3:86659963-86659982 MsG0380016694.01.T01:intron 25.0%
! ATTACTAGTTAAATGTACAC+TGG - Chr3:86662302-86662321 None:intergenic 25.0%
! ATTAGGGATTTAGTTGAAAT+GGG - Chr3:86658433-86658452 None:intergenic 25.0%
! ATTATCTTATACCAAGAGTT+AGG + Chr3:86663169-86663188 MsG0380016694.01.T01:intron 25.0%
! CATCATTGTTATCTGATTAT+AGG + Chr3:86661768-86661787 MsG0380016694.01.T01:intron 25.0%
! CTATTGAATAGTTTCCAATT+GGG + Chr3:86664241-86664260 MsG0380016694.01.T01:intron 25.0%
! GAATCCAATTTACTTTCAAA+TGG - Chr3:86661858-86661877 None:intergenic 25.0%
! GAATTAAATTATGCACCTTA+TGG + Chr3:86660175-86660194 MsG0380016694.01.T01:intron 25.0%
! GATTACACCATATGTAAAAT+AGG - Chr3:86660632-86660651 None:intergenic 25.0%
! GATTTCATAATTAGCACATT+TGG + Chr3:86662925-86662944 MsG0380016694.01.T01:intron 25.0%
! TAAATCAACATACTGTTTCA+AGG - Chr3:86659921-86659940 None:intergenic 25.0%
! TAATTACCTACTATTGCTAT+AGG - Chr3:86659963-86659982 None:intergenic 25.0%
! TACATCAATCACTTTAATCT+GGG - Chr3:86662207-86662226 None:intergenic 25.0%
! TATAGCAATAGTAGGTAATT+AGG + Chr3:86659962-86659981 MsG0380016694.01.T01:intron 25.0%
! TATTGAATAGTTTCCAATTG+GGG + Chr3:86664242-86664261 MsG0380016694.01.T01:intron 25.0%
! TGTAAAATAGGATTGAATAG+CGG - Chr3:86660620-86660639 None:intergenic 25.0%
! TGTACATTTAACTAGTAATG+TGG + Chr3:86662303-86662322 MsG0380016694.01.T01:intron 25.0%
! TTGTTACAATTGCTTCAAAA+TGG - Chr3:86663389-86663408 None:intergenic 25.0%
! TTTCAAATTACGTTTGTAAG+TGG - Chr3:86659269-86659288 None:intergenic 25.0%
! TTTCATAATTAGCACATTTG+GGG + Chr3:86662927-86662946 MsG0380016694.01.T01:intron 25.0%
!! GTACCTTTTTATGCATATTA+AGG - Chr3:86664158-86664177 None:intergenic 25.0%
!! TATGCCATTTGAAAGTAAAT+TGG + Chr3:86661851-86661870 MsG0380016694.01.T01:CDS 25.0%
!! TGAATAATTTTCAAAGGTGA+GGG - Chr3:86664215-86664234 None:intergenic 25.0%
!! TTTTCTCATGCTTAATTTTG+GGG - Chr3:86660064-86660083 None:intergenic 25.0%
!!! TCCTTTTTGAGATAATAAGA+TGG + Chr3:86660718-86660737 MsG0380016694.01.T01:intron 25.0%
!!! TTGATACTGTTTTTCTTTTC+AGG + Chr3:86661319-86661338 MsG0380016694.01.T01:intron 25.0%
AAAGAGAGGGAAAAAAACAA+AGG + Chr3:86658241-86658260 MsG0380016694.01.T01:five_prime_UTR 30.0%
AAAGGTTAAGAGTGAAAAGA+AGG + Chr3:86663018-86663037 MsG0380016694.01.T01:intron 30.0%
AAATGGTTATATGCCAAGAT+TGG - Chr3:86663372-86663391 None:intergenic 30.0%
AAATGTACACTGGAATGAAA+TGG - Chr3:86662292-86662311 None:intergenic 30.0%
AACTATTAAGTACAGTTCCA+AGG - Chr3:86661114-86661133 None:intergenic 30.0%
AAGAACGTAATTATCTTCTG+TGG - Chr3:86661492-86661511 None:intergenic 30.0%
AATATGCATGAACATTTGGT+TGG - Chr3:86662580-86662599 None:intergenic 30.0%
AATGATTGTGAGCAAAAGAT+TGG + Chr3:86661563-86661582 MsG0380016694.01.T01:CDS 30.0%
AATGGTTATATGCCAAGATT+GGG - Chr3:86663371-86663390 None:intergenic 30.0%
AATTGTATTTCCACGACATA+TGG + Chr3:86663439-86663458 MsG0380016694.01.T01:intron 30.0%
AATTTAGACATTATTGGCGA+TGG + Chr3:86662442-86662461 MsG0380016694.01.T01:intron 30.0%
ACAGTTTACAGACTGAAATA+TGG + Chr3:86664340-86664359 MsG0380016694.01.T01:intron 30.0%
ACCATAGTATAGAATGCATA+CGG - Chr3:86660654-86660673 None:intergenic 30.0%
ACTATTAAGTACAGTTCCAA+GGG - Chr3:86661113-86661132 None:intergenic 30.0%
AGAAACTCAAACAAGCAATT+AGG + Chr3:86658314-86658333 MsG0380016694.01.T01:five_prime_UTR 30.0%
AGGCTCAAAAATATAGTAGT+AGG + Chr3:86663110-86663129 MsG0380016694.01.T01:intron 30.0%
AGTGATTATGAATGTGGTTA+AGG - Chr3:86658846-86658865 None:intergenic 30.0%
ATACAATAAGGTTATTGCAG+AGG + Chr3:86664465-86664484 MsG0380016694.01.T01:CDS 30.0%
ATCCATACCCAAAAAAACAA+AGG - Chr3:86661987-86662006 None:intergenic 30.0%
ATTGAATAGTTTCCAATTGG+GGG + Chr3:86664243-86664262 MsG0380016694.01.T01:intron 30.0%
CACACATACACATGAATAAA+TGG - Chr3:86658906-86658925 None:intergenic 30.0%
CTAGAAGATGAATGAAACTA+AGG + Chr3:86660103-86660122 MsG0380016694.01.T01:intron 30.0%
CTGCACATATACTTATCAAT+TGG + Chr3:86662343-86662362 MsG0380016694.01.T01:intron 30.0%
CTTATTATCTCAAAAAGGAG+AGG - Chr3:86660717-86660736 None:intergenic 30.0%
CTTTATCAGATCAAGCTTTA+GGG - Chr3:86662806-86662825 None:intergenic 30.0%
GAAACTCAAACAAGCAATTA+GGG + Chr3:86658315-86658334 MsG0380016694.01.T01:five_prime_UTR 30.0%
GAACATAAACATGAATGTCA+AGG + Chr3:86661596-86661615 MsG0380016694.01.T01:CDS 30.0%
GATTGTGGACATATATCTTA+TGG - Chr3:86659859-86659878 None:intergenic 30.0%
GCATGATTAAGAAATGATTG+TGG - Chr3:86659874-86659893 None:intergenic 30.0%
GGAATGAGAAGAATAAAGTA+AGG - Chr3:86660361-86660380 None:intergenic 30.0%
GGAGAAAATAGTTCAAACAT+AGG - Chr3:86663972-86663991 None:intergenic 30.0%
GGCAAAGCTATTTATAAAGT+TGG + Chr3:86662534-86662553 MsG0380016694.01.T01:intron 30.0%
GTATATTGAACCATTGAACA+AGG - Chr3:86663569-86663588 None:intergenic 30.0%
GTCAAGAAACCAATTTCAAA+AGG + Chr3:86663000-86663019 MsG0380016694.01.T01:intron 30.0%
GTTATCTGATTATAGGTATC+TGG + Chr3:86661775-86661794 MsG0380016694.01.T01:intron 30.0%
TAAGCCACATGTTTAAACAA+AGG - Chr3:86660267-86660286 None:intergenic 30.0%
TACTACTATATTTGTGCTCT+TGG - Chr3:86659619-86659638 None:intergenic 30.0%
TACTTTATTCTTCTCATTCC+TGG + Chr3:86660361-86660380 MsG0380016694.01.T01:intron 30.0%
TCAATTTCACCAACTTCAAA+AGG - Chr3:86658745-86658764 None:intergenic 30.0%
TCTTTATCAGATCAAGCTTT+AGG - Chr3:86662807-86662826 None:intergenic 30.0%
TGAAATATAGGCATTACGAA+AGG + Chr3:86658717-86658736 MsG0380016694.01.T01:intron 30.0%
TGATATAGAGATTCCATTGA+TGG - Chr3:86661939-86661958 None:intergenic 30.0%
TGTATAAACACCTTGTTCAA+TGG + Chr3:86663556-86663575 MsG0380016694.01.T01:intron 30.0%
TTAAAATCAATAGACGCTCA+TGG + Chr3:86662241-86662260 MsG0380016694.01.T01:intron 30.0%
TTATGTTGAGTGGAAATGAT+CGG - Chr3:86663468-86663487 None:intergenic 30.0%
TTTAACTAGTAATGTGGAAC+AGG + Chr3:86662309-86662328 MsG0380016694.01.T01:intron 30.0%
TTTACAATCTCGCAAGTTTA+GGG + Chr3:86660979-86660998 MsG0380016694.01.T01:intron 30.0%
TTTGATGTGAATTAGTACTG+AGG - Chr3:86660475-86660494 None:intergenic 30.0%
! ACATATGTTGCTTAGCATTT+AGG + Chr3:86663923-86663942 MsG0380016694.01.T01:intron 30.0%
! AGTTTTCCTATGGCTAATAA+TGG + Chr3:86663051-86663070 MsG0380016694.01.T01:intron 30.0%
! ATTTCAACAGAAATTTTGCC+AGG - Chr3:86662902-86662921 None:intergenic 30.0%
! CAACTTTTTGTTGAGCTTTT+AGG + Chr3:86663406-86663425 MsG0380016694.01.T01:intron 30.0%
! CCTTTCCTCTAATTTTATGT+GGG - Chr3:86663289-86663308 None:intergenic 30.0%
! CTACAAGAGTTTGCTTATAT+TGG + Chr3:86661196-86661215 MsG0380016694.01.T01:intron 30.0%
! CTGAATAATTTTCAAAGGTG+AGG - Chr3:86664216-86664235 None:intergenic 30.0%
! CTTTCCTCTAATTTTATGTG+GGG - Chr3:86663288-86663307 None:intergenic 30.0%
! GATAAAGTAAGCTACTTTGA+GGG + Chr3:86663817-86663836 MsG0380016694.01.T01:intron 30.0%
! TCCTTTCCTCTAATTTTATG+TGG - Chr3:86663290-86663309 None:intergenic 30.0%
! TGATAAAGTAAGCTACTTTG+AGG + Chr3:86663816-86663835 MsG0380016694.01.T01:intron 30.0%
! TTGTTTCTTACCATAGCATA+TGG - Chr3:86660872-86660891 None:intergenic 30.0%
! TTTCCTCTAATTTTATGTGG+GGG - Chr3:86663287-86663306 None:intergenic 30.0%
! TTTTACAATCTCGCAAGTTT+AGG + Chr3:86660978-86660997 MsG0380016694.01.T01:intron 30.0%
! TTTTTGTCAAAGAACTCATC+TGG + Chr3:86661680-86661699 MsG0380016694.01.T01:CDS 30.0%
!! ATGTTGATTTAAGATACACG+TGG + Chr3:86659930-86659949 MsG0380016694.01.T01:intron 30.0%
!! GACTTTTTGAAGGCTTTTTA+GGG - Chr3:86660318-86660337 None:intergenic 30.0%
!! GGCTTTAGATTATTATACTC+AGG + Chr3:86658605-86658624 MsG0380016694.01.T01:CDS 30.0%
!! GTGTTTCACTTTTGAATTCT+GGG + Chr3:86659796-86659815 MsG0380016694.01.T01:intron 30.0%
!! TGACTTTTTGAAGGCTTTTT+AGG - Chr3:86660319-86660338 None:intergenic 30.0%
!! TTGAGCTTTTAGGAAGTTAT+AGG + Chr3:86663416-86663435 MsG0380016694.01.T01:intron 30.0%
!!! CACTCTTAACCTTTTGAAAT+TGG - Chr3:86663012-86663031 None:intergenic 30.0%
!!! GCGATGGCAATTTTTTTTTT+GGG + Chr3:86662458-86662477 MsG0380016694.01.T01:intron 30.0%
!!! TATGAATAGAAGCGTCATTT+TGG - Chr3:86664063-86664082 None:intergenic 30.0%
!!! TGAAGTACATTTCTGGTTTT+TGG - Chr3:86659896-86659915 None:intergenic 30.0%
!!! TTCAGCATTTTTTTATTGCC+TGG + Chr3:86661054-86661073 MsG0380016694.01.T01:intron 30.0%
!!! TTCCTTTGTTTTTTTGGGTA+TGG + Chr3:86661982-86662001 MsG0380016694.01.T01:intron 30.0%
AAACACACCTTTGAATAGCT+TGG - Chr3:86659001-86659020 None:intergenic 35.0%
AACTTCATTATTCTGGCATC+AGG + Chr3:86659449-86659468 MsG0380016694.01.T01:intron 35.0%
AAGGTACACACTGTTCAATT+TGG + Chr3:86664171-86664190 MsG0380016694.01.T01:intron 35.0%
AATTATGCACCTTATGGACT+AGG + Chr3:86660181-86660200 MsG0380016694.01.T01:intron 35.0%
ACAGTCTTCTTGAGATGAAT+GGG + Chr3:86661280-86661299 MsG0380016694.01.T01:intron 35.0%
ACATGTTTAAACAAAGGCAG+GGG - Chr3:86660261-86660280 None:intergenic 35.0%
AGCATATTCAGCAAGATTGT+TGG - Chr3:86661525-86661544 None:intergenic 35.0%
AGGAAAGGCAAATATTGCAT+TGG + Chr3:86659485-86659504 MsG0380016694.01.T01:CDS 35.0%
AGGGAAAAAAACAAAGGAAG+TGG + Chr3:86658247-86658266 MsG0380016694.01.T01:five_prime_UTR 35.0%
ATATGTAGAGTTGAGTGACT+TGG + Chr3:86663885-86663904 MsG0380016694.01.T01:intron 35.0%
ATGGTTATATGCCAAGATTG+GGG - Chr3:86663370-86663389 None:intergenic 35.0%
CAAGGATTGAAGTACATTTC+TGG - Chr3:86659903-86659922 None:intergenic 35.0%
CAATGGAATCTCTATATCAC+AGG + Chr3:86661940-86661959 MsG0380016694.01.T01:CDS 35.0%
CACATGTTTAAACAAAGGCA+GGG - Chr3:86660262-86660281 None:intergenic 35.0%
CCATATTCCATTTATCTCCT+AGG + Chr3:86662503-86662522 MsG0380016694.01.T01:intron 35.0%
CCCACATAAAATTAGAGGAA+AGG + Chr3:86663286-86663305 MsG0380016694.01.T01:intron 35.0%
CCTAGGAGATAAATGGAATA+TGG - Chr3:86662506-86662525 None:intergenic 35.0%
CTATATTTGTGCTCTTGGAT+TGG - Chr3:86659614-86659633 None:intergenic 35.0%
CTCCAAAAATAAGTTACCTG+TGG - Chr3:86662677-86662696 None:intergenic 35.0%
GACTGAAATATGGAAATGAC+AGG + Chr3:86664350-86664369 MsG0380016694.01.T01:intron 35.0%
GATATGTCCAAGCTATTCAA+AGG + Chr3:86658991-86659010 MsG0380016694.01.T01:CDS 35.0%
GATTTAGTTGAAATGGGAGA+AGG - Chr3:86658427-86658446 None:intergenic 35.0%
GCATATATAAAAGAGTGACC+TGG + Chr3:86662881-86662900 MsG0380016694.01.T01:intron 35.0%
GCATATTCAGCAAGATTGTT+GGG - Chr3:86661524-86661543 None:intergenic 35.0%
GCATTGAAGTTTGATGTAGT+TGG + Chr3:86659370-86659389 MsG0380016694.01.T01:intron 35.0%
GCATTTCATTGTCAATGTAC+TGG + Chr3:86663661-86663680 MsG0380016694.01.T01:CDS 35.0%
GCTTCTATTCATATTCAACC+TGG + Chr3:86664070-86664089 MsG0380016694.01.T01:CDS 35.0%
GGAAAGGCAAATATTGCATT+GGG + Chr3:86659486-86659505 MsG0380016694.01.T01:CDS 35.0%
GGTTCATATTCTTGACAACA+TGG + Chr3:86662956-86662975 MsG0380016694.01.T01:intron 35.0%
TATGGCTAATAATGGCATTG+AGG + Chr3:86663059-86663078 MsG0380016694.01.T01:intron 35.0%
TATTTACTATCAGCTCATGC+AGG - Chr3:86664297-86664316 None:intergenic 35.0%
TCAATGCCATTATTAGCCAT+AGG - Chr3:86663060-86663079 None:intergenic 35.0%
TCCGTATGCATTCTATACTA+TGG + Chr3:86660650-86660669 MsG0380016694.01.T01:intron 35.0%
TCGACAGAAACTTGATCATT+CGG - Chr3:86659325-86659344 None:intergenic 35.0%
TGAATTCTGGGTGATTCTTT+GGG + Chr3:86659808-86659827 MsG0380016694.01.T01:intron 35.0%
TGAGGGAAAAGCTGTTATTA+GGG - Chr3:86664198-86664217 None:intergenic 35.0%
TGCTAGAAAACTTCAATCAG+AGG + Chr3:86660529-86660548 MsG0380016694.01.T01:intron 35.0%
TTACTTTATCAGCAACAGCT+AGG - Chr3:86663807-86663826 None:intergenic 35.0%
TTGAATTCTGGGTGATTCTT+TGG + Chr3:86659807-86659826 MsG0380016694.01.T01:intron 35.0%
TTGCTTAGCATTTAGGAGTT+GGG + Chr3:86663930-86663949 MsG0380016694.01.T01:intron 35.0%
TTGTTAAGCAGCTAGCAAAT+TGG + Chr3:86659690-86659709 MsG0380016694.01.T01:intron 35.0%
! AAAGATTCATTTTCTGCAGC+AGG - Chr3:86658934-86658953 None:intergenic 35.0%
! AAAGTTCTGTTTTGCAGGTT+GGG + Chr3:86663593-86663612 MsG0380016694.01.T01:intron 35.0%
! AAGATTCATTTTCTGCAGCA+GGG - Chr3:86658933-86658952 None:intergenic 35.0%
! AGCTTTTATTCTTACTGTGC+AGG + Chr3:86661806-86661825 MsG0380016694.01.T01:intron 35.0%
! ATCATGAGTGAGTTTTCCTA+TGG + Chr3:86663041-86663060 MsG0380016694.01.T01:intron 35.0%
! ATGGCTAATAATGGCATTGA+GGG + Chr3:86663060-86663079 MsG0380016694.01.T01:intron 35.0%
! ATTATGCACCTTATGGACTA+GGG + Chr3:86660182-86660201 MsG0380016694.01.T01:intron 35.0%
! ATTGCTTGTTTGAGTTTCTC+TGG - Chr3:86658313-86658332 None:intergenic 35.0%
! CAGATAAAGTTCTGTTTTGC+AGG + Chr3:86663588-86663607 MsG0380016694.01.T01:intron 35.0%
! CTCTAATGCTGATTATGTCA+AGG + Chr3:86658584-86658603 MsG0380016694.01.T01:CDS 35.0%
! CTCTATATCACAGGTTGTTT+TGG + Chr3:86661949-86661968 MsG0380016694.01.T01:CDS 35.0%
! GAAGACTACATTTTCTCTAC+GGG - Chr3:86663265-86663284 None:intergenic 35.0%
! GCTTCAATTGAAAGTACAAG+AGG + Chr3:86661009-86661028 MsG0380016694.01.T01:intron 35.0%
! GGAAGACTACATTTTCTCTA+CGG - Chr3:86663266-86663285 None:intergenic 35.0%
! GGTATTGAACACGATATACA+AGG - Chr3:86661413-86661432 None:intergenic 35.0%
! GTATGCAAGTGACTTTTTGA+AGG - Chr3:86660328-86660347 None:intergenic 35.0%
! TAAAGTTCTGTTTTGCAGGT+TGG + Chr3:86663592-86663611 MsG0380016694.01.T01:intron 35.0%
! TGGAGATATCACAAGTTTTG+TGG + Chr3:86661700-86661719 MsG0380016694.01.T01:CDS 35.0%
!! AAAGGTATCCAAGACTGAAT+AGG - Chr3:86660037-86660056 None:intergenic 35.0%
!! AAATTGGTTAAGGCTTGTTG+AGG + Chr3:86659706-86659725 MsG0380016694.01.T01:intron 35.0%
!! AATCTTCTATTAGTGGGCTT+GGG - Chr3:86663224-86663243 None:intergenic 35.0%
!! AATTTGCTAGCTGCTTAACA+AGG - Chr3:86659691-86659710 None:intergenic 35.0%
!! ACACTTTGCAGCTTTATTTG+AGG - Chr3:86660771-86660790 None:intergenic 35.0%
!! CACAAGTTTTGTGGAAAAGT+TGG + Chr3:86661709-86661728 MsG0380016694.01.T01:CDS 35.0%
!! CGTGTTTCACTTTTGAATTC+TGG + Chr3:86659795-86659814 MsG0380016694.01.T01:intron 35.0%
!! GCTTAATTTTGGGGAACTAA+AGG - Chr3:86660055-86660074 None:intergenic 35.0%
!! GTCCACAGGTAACTTATTTT+TGG + Chr3:86662672-86662691 MsG0380016694.01.T01:intron 35.0%
!! TCACACAATGAAAAGCATTG+AGG - Chr3:86663717-86663736 None:intergenic 35.0%
!! TTTTGAAGGCTTTTTAGGGA+TGG - Chr3:86660314-86660333 None:intergenic 35.0%
!!! GGCGATGGCAATTTTTTTTT+TGG + Chr3:86662457-86662476 MsG0380016694.01.T01:intron 35.0%
AAACAAAGGAAGTGGTGTAG+AGG + Chr3:86658255-86658274 MsG0380016694.01.T01:five_prime_UTR 40.0%
AATAGGATTGAATAGCGGTC+AGG - Chr3:86660615-86660634 None:intergenic 40.0%
AATATGGCTCAGAATCACGA+AGG - Chr3:86662490-86662509 None:intergenic 40.0%
AATGCCAAATAAAGGCAGGT+GGG + Chr3:86661450-86661469 MsG0380016694.01.T01:CDS 40.0%
ACAATACCTGACCTAACTCT+TGG - Chr3:86663183-86663202 None:intergenic 40.0%
ACTCTGACCTAGGAGATAAA+TGG - Chr3:86662513-86662532 None:intergenic 40.0%
AGCAGCTAGCAAATTGGTTA+AGG + Chr3:86659696-86659715 MsG0380016694.01.T01:intron 40.0%
AGTCACTTGCATACATCAAG+AGG + Chr3:86660334-86660353 MsG0380016694.01.T01:intron 40.0%
ATACAAGGAACTCTATCAGC+AGG - Chr3:86661398-86661417 None:intergenic 40.0%
ATAGGATTGAATAGCGGTCA+GGG - Chr3:86660614-86660633 None:intergenic 40.0%
ATTAAGTACAGTTCCAAGGG+AGG - Chr3:86661110-86661129 None:intergenic 40.0%
ATTGTCAACAACAACACGAG+AGG + Chr3:86658192-86658211 MsG0380016694.01.T01:five_prime_UTR 40.0%
ATTTATCTCCTAGGTCAGAG+TGG + Chr3:86662512-86662531 MsG0380016694.01.T01:intron 40.0%
CAAACAAAATGTGACCAACG+AGG - Chr3:86660591-86660610 None:intergenic 40.0%
CACAGTCTTCTTGAGATGAA+TGG + Chr3:86661279-86661298 MsG0380016694.01.T01:intron 40.0%
CATGTTTAAACAAAGGCAGG+GGG - Chr3:86660260-86660279 None:intergenic 40.0%
CATTCATCTCAAGAAGACTG+TGG - Chr3:86661281-86661300 None:intergenic 40.0%
CCACATGTTTAAACAAAGGC+AGG - Chr3:86660263-86660282 None:intergenic 40.0%
CGCAGCAATCTTCTATTAGT+GGG - Chr3:86663230-86663249 None:intergenic 40.0%
CTGCTACACAAGGTTTATGA+TGG - Chr3:86662053-86662072 None:intergenic 40.0%
CTTATACCAAGAGTTAGGTC+AGG + Chr3:86663174-86663193 MsG0380016694.01.T01:intron 40.0%
CTTCCCCCACATAAAATTAG+AGG + Chr3:86663281-86663300 MsG0380016694.01.T01:intron 40.0%
GAACATTTGGTTGGCAAGAA+TGG - Chr3:86662571-86662590 None:intergenic 40.0%
GAAGATATGGAGACTCTGAA+AGG + Chr3:86658280-86658299 MsG0380016694.01.T01:five_prime_UTR 40.0%
GATGAGCCTATAGCAATAGT+AGG + Chr3:86659954-86659973 MsG0380016694.01.T01:intron 40.0%
GATTGTATGCTAGACGAGTT+AGG + Chr3:86660408-86660427 MsG0380016694.01.T01:intron 40.0%
GCAAAGGAAGAAGAAAGAGA+GGG + Chr3:86658228-86658247 MsG0380016694.01.T01:five_prime_UTR 40.0%
GCGTTGAAATATAAGCAGCT+TGG + Chr3:86658549-86658568 MsG0380016694.01.T01:CDS 40.0%
GTAGGTCGTTCAAGCAATAA+TGG - Chr3:86661376-86661395 None:intergenic 40.0%
GTGAGGGAAAAGCTGTTATT+AGG - Chr3:86664199-86664218 None:intergenic 40.0%
GTTGCTTAGCATTTAGGAGT+TGG + Chr3:86663929-86663948 MsG0380016694.01.T01:intron 40.0%
GTTTGCACACATTTCATTCC+AGG - Chr3:86660382-86660401 None:intergenic 40.0%
TCGCAGCAATCTTCTATTAG+TGG - Chr3:86663231-86663250 None:intergenic 40.0%
TCTTGACAACATGGCTGAAA+AGG + Chr3:86662965-86662984 MsG0380016694.01.T01:intron 40.0%
TGCTGAAGAACCATATGCTA+TGG + Chr3:86660859-86660878 MsG0380016694.01.T01:intron 40.0%
TGGCGATTCTGTAAGCAAAT+AGG + Chr3:86661216-86661235 MsG0380016694.01.T01:intron 40.0%
TGGTGTAGAGGAAGAAGATA+TGG + Chr3:86658267-86658286 MsG0380016694.01.T01:five_prime_UTR 40.0%
TGTCAGCTGGAATTGTCTTA+CGG + Chr3:86662650-86662669 MsG0380016694.01.T01:intron 40.0%
TGTGTGAACCCAAATTGTTC+TGG + Chr3:86663730-86663749 MsG0380016694.01.T01:CDS 40.0%
TTTATCTCCTAGGTCAGAGT+GGG + Chr3:86662513-86662532 MsG0380016694.01.T01:intron 40.0%
! ACTGCCTTCTGACATAGTTT+TGG + Chr3:86661637-86661656 MsG0380016694.01.T01:CDS 40.0%
! AGATCTCAAAGCGTCTGAAA+TGG - Chr3:86664416-86664435 None:intergenic 40.0%
! AGGATGGAGAACTTTTGTGA+AGG - Chr3:86664501-86664520 None:intergenic 40.0%
! AGTTCTCTGGAAAGAAAACC+AGG - Chr3:86661075-86661094 None:intergenic 40.0%
! ATGAATGTCAAGGAGTGCAT+TGG + Chr3:86661606-86661625 MsG0380016694.01.T01:CDS 40.0%
! CCTGCCTTTGTTTAAACATG+TGG + Chr3:86660260-86660279 MsG0380016694.01.T01:intron 40.0%
! CTTTAGGGATGCTTGATTAC+TGG - Chr3:86662791-86662810 None:intergenic 40.0%
! TCTGTCGAGAGACAGATTTT+GGG + Chr3:86659337-86659356 MsG0380016694.01.T01:intron 40.0%
! TGGCTAATAATGGCATTGAG+GGG + Chr3:86663061-86663080 MsG0380016694.01.T01:intron 40.0%
! TGGTTTTCTTTCCAGAGAAC+TGG + Chr3:86661074-86661093 MsG0380016694.01.T01:intron 40.0%
! TTCATTTCGACCTTTTCACC+AGG + Chr3:86658392-86658411 MsG0380016694.01.T01:five_prime_UTR 40.0%
! TTCTGTCGAGAGACAGATTT+TGG + Chr3:86659336-86659355 MsG0380016694.01.T01:intron 40.0%
!! AAGAGTGTCGAATCATCAAC+AGG + Chr3:86659546-86659565 MsG0380016694.01.T01:CDS 40.0%
!! AAGTTCTGAGAGAATGGAGA+AGG - Chr3:86660450-86660469 None:intergenic 40.0%
!! AGTTCTGAGAGAATGGAGAA+GGG - Chr3:86660449-86660468 None:intergenic 40.0%
!! CAATCTTCTATTAGTGGGCT+TGG - Chr3:86663225-86663244 None:intergenic 40.0%
!!! AGGGGTATTTTTGCTACGAT+AGG + Chr3:86663079-86663098 MsG0380016694.01.T01:intron 40.0%
!!! CTATAAGGAAGAGGGTGTTT+TGG - Chr3:86660156-86660175 None:intergenic 40.0%
AAATTGTTCTGGCGCAGTGT+TGG + Chr3:86663741-86663760 MsG0380016694.01.T01:CDS 45.0%
AACACTGCGCCAGAACAATT+TGG - Chr3:86663742-86663761 None:intergenic 45.0%
AACTTTCCCACGTGGCAATT+AGG - Chr3:86659232-86659251 None:intergenic 45.0%
AAGATGGTACAGTGCGTTTG+TGG + Chr3:86660734-86660753 MsG0380016694.01.T01:intron 45.0%
AAGGAACTCTATCAGCAGGT+AGG - Chr3:86661394-86661413 None:intergenic 45.0%
ACACTGCGCCAGAACAATTT+GGG - Chr3:86663741-86663760 None:intergenic 45.0%
ACCATGCCTCTTCCTTTATC+AGG - Chr3:86660801-86660820 None:intergenic 45.0%
ACCTGATAAAGGAAGAGGCA+TGG + Chr3:86660797-86660816 MsG0380016694.01.T01:CDS 45.0%
AGAAACAATCGTTGCCTCGT+TGG + Chr3:86660574-86660593 MsG0380016694.01.T01:intron 45.0%
AGGTGGTTTGATGTTGGCAA+AGG + Chr3:86658212-86658231 MsG0380016694.01.T01:five_prime_UTR 45.0%
AGTGTCTCCGTACCTGATAA+AGG + Chr3:86660786-86660805 MsG0380016694.01.T01:CDS 45.0%
ATATGGAAATGACAGGCTGC+AGG + Chr3:86664357-86664376 MsG0380016694.01.T01:intron 45.0%
ATGCAGTTCTTACCGTGATC+TGG + Chr3:86664105-86664124 MsG0380016694.01.T01:CDS 45.0%
CAATGCCAAATAAAGGCAGG+TGG + Chr3:86661449-86661468 MsG0380016694.01.T01:CDS 45.0%
CACCAATGCCAAATAAAGGC+AGG + Chr3:86661446-86661465 MsG0380016694.01.T01:CDS 45.0%
CATTATTCTGGCATCAGGCA+TGG + Chr3:86659454-86659473 MsG0380016694.01.T01:intron 45.0%
CCACGTGGGAAAGTTTATTG+GGG + Chr3:86659237-86659256 MsG0380016694.01.T01:intron 45.0%
CCAGCCAAAACTATGTCAGA+AGG - Chr3:86661644-86661663 None:intergenic 45.0%
CTCGCACCAATGCCAAATAA+AGG + Chr3:86661442-86661461 MsG0380016694.01.T01:CDS 45.0%
CTGCATTTCAAACAGACTCC+AGG - Chr3:86664091-86664110 None:intergenic 45.0%
GAACCTGGTGAAACATCAGA+TGG - Chr3:86660830-86660849 None:intergenic 45.0%
GAGAACAGCTTGAGTACTAC+GGG + Chr3:86659654-86659673 MsG0380016694.01.T01:intron 45.0%
GAGTTGGGAGCTTGGATATA+TGG + Chr3:86663945-86663964 MsG0380016694.01.T01:intron 45.0%
GCCACGTGGGAAAGTTTATT+GGG + Chr3:86659236-86659255 MsG0380016694.01.T01:intron 45.0%
GCCTCTTCCTTTATCAGGTA+CGG - Chr3:86660796-86660815 None:intergenic 45.0%
GGAGAACAGCTTGAGTACTA+CGG + Chr3:86659653-86659672 MsG0380016694.01.T01:intron 45.0%
GGCAAAGGAAGAAGAAAGAG+AGG + Chr3:86658227-86658246 MsG0380016694.01.T01:five_prime_UTR 45.0%
GTAGGTAATTAGGGTTTCCG+AGG + Chr3:86659972-86659991 MsG0380016694.01.T01:intron 45.0%
GTAGTACGTACCTGGTGAAA+AGG - Chr3:86658405-86658424 None:intergenic 45.0%
GTGTCGAATCATCAACAGGA+GGG + Chr3:86659550-86659569 MsG0380016694.01.T01:CDS 45.0%
GTTGTTCTCCCTAGTCCATA+AGG - Chr3:86660193-86660212 None:intergenic 45.0%
TCCGTACCTGATAAAGGAAG+AGG + Chr3:86660792-86660811 MsG0380016694.01.T01:CDS 45.0%
TCTTTGCCTAATTGCCACGT+GGG + Chr3:86659223-86659242 MsG0380016694.01.T01:intron 45.0%
TGATCGGAAACCATATGTCG+TGG - Chr3:86663452-86663471 None:intergenic 45.0%
TGATGTTTCACCAGGTTCGT+TGG + Chr3:86660832-86660851 MsG0380016694.01.T01:intron 45.0%
TGCCACGTGGGAAAGTTTAT+TGG + Chr3:86659235-86659254 MsG0380016694.01.T01:intron 45.0%
TGCTACGATAGGCAAACATG+AGG + Chr3:86663090-86663109 MsG0380016694.01.T01:intron 45.0%
TTATCTAGCTAGCCCCCAAT+TGG - Chr3:86664258-86664277 None:intergenic 45.0%
TTCTTTGCCTAATTGCCACG+TGG + Chr3:86659222-86659241 MsG0380016694.01.T01:intron 45.0%
TTTGCCCACCTGCCTTTATT+TGG - Chr3:86661457-86661476 None:intergenic 45.0%
! AGTGTCGAATCATCAACAGG+AGG + Chr3:86659549-86659568 MsG0380016694.01.T01:CDS 45.0%
! CACCTGCCTTTATTTGGCAT+TGG - Chr3:86661451-86661470 None:intergenic 45.0%
! CTGTCGAGAGACAGATTTTG+GGG + Chr3:86659338-86659357 MsG0380016694.01.T01:intron 45.0%
! GGGAGAACAACTCACTGTTT+TGG + Chr3:86660202-86660221 MsG0380016694.01.T01:intron 45.0%
! TTAGCACATTTGGGGTTGCA+TGG + Chr3:86662935-86662954 MsG0380016694.01.T01:intron 45.0%
! TTGAGGTGCCTATTCAGTCT+TGG + Chr3:86660026-86660045 MsG0380016694.01.T01:intron 45.0%
!! AGTAGCATTGACCCCAATCT+TGG + Chr3:86663356-86663375 MsG0380016694.01.T01:intron 45.0%
!! GAGGTGAAGTTCTGAGAGAA+TGG - Chr3:86660456-86660475 None:intergenic 45.0%
!! TGTTTTGCAGGTTGGGTTGT+GGG + Chr3:86663600-86663619 MsG0380016694.01.T01:intron 45.0%
!! TTATGTCGGCTTAGAGCTTG+AGG + Chr3:86660009-86660028 MsG0380016694.01.T01:intron 45.0%
!!! CCTTCTGACATAGTTTTGGC+TGG + Chr3:86661641-86661660 MsG0380016694.01.T01:CDS 45.0%
!!! CGAAAGGCTCCTTTTGAAGT+TGG + Chr3:86658733-86658752 MsG0380016694.01.T01:CDS 45.0%
!!! GGTGTTTTGGCTGAGTTTCT+TGG - Chr3:86660143-86660162 None:intergenic 45.0%
AAGCTGTTCTCCTTCTGTCG+CGG - Chr3:86659645-86659664 None:intergenic 50.0%
ATGTCAGAAGGCAGTACAGC+AGG - Chr3:86661632-86661651 None:intergenic 50.0%
CACGAGAGGTGGTTTGATGT+TGG + Chr3:86658206-86658225 MsG0380016694.01.T01:five_prime_UTR 50.0%
CACGTGAAGACTCCAGATCA+CGG - Chr3:86664120-86664139 None:intergenic 50.0%
CATCAGGCATGGTATAGGAG+AGG + Chr3:86659465-86659484 MsG0380016694.01.T01:intron 50.0%
CATTGGTGCGAGCAGTACAA+TGG - Chr3:86661434-86661453 None:intergenic 50.0%
CCCCAATAAACTTTCCCACG+TGG - Chr3:86659240-86659259 None:intergenic 50.0%
CCTGGTGAAACATCAGATGG+CGG - Chr3:86660827-86660846 None:intergenic 50.0%
GCATTTAGGAGTTGGGAGCT+TGG + Chr3:86663937-86663956 MsG0380016694.01.T01:intron 50.0%
GGAATTGTCTTACGGTCCAC+AGG + Chr3:86662658-86662677 MsG0380016694.01.T01:intron 50.0%
GGAGCTATGCTTGCCATCAA+TGG + Chr3:86661923-86661942 MsG0380016694.01.T01:CDS 50.0%
GGCATGGTATAGGAGAGGAA+AGG + Chr3:86659470-86659489 MsG0380016694.01.T01:intron 50.0%
GTCAACAACAACACGAGAGG+TGG + Chr3:86658195-86658214 MsG0380016694.01.T01:five_prime_UTR 50.0%
TCAGCATGAACCAACGAACC+TGG - Chr3:86660845-86660864 None:intergenic 50.0%
TCTGGCATCAGGCATGGTAT+AGG + Chr3:86659460-86659479 MsG0380016694.01.T01:intron 50.0%
! CATGGACTGTCAGATCAGTC+TGG + Chr3:86662259-86662278 MsG0380016694.01.T01:intron 50.0%
!! CTGTTTTGCAGGTTGGGTTG+TGG + Chr3:86663599-86663618 MsG0380016694.01.T01:intron 50.0%
ACAAAGGCAGGGGGCTTTCA+AGG - Chr3:86660251-86660270 None:intergenic 55.0%
ACAACACAAGCCGTAGCAGC+TGG + Chr3:86662626-86662645 MsG0380016694.01.T01:intron 55.0%
ACCCTAGCTATGCTCTGTGC+GGG + Chr3:86658511-86658530 MsG0380016694.01.T01:CDS 55.0%
AGCTTTGCCCACTCTGACCT+AGG - Chr3:86662523-86662542 None:intergenic 55.0%
AGTAGTACAGCCGCGACAGA+AGG + Chr3:86659632-86659651 MsG0380016694.01.T01:intron 55.0%
CAAAGGCAGGGGGCTTTCAA+GGG - Chr3:86660250-86660269 None:intergenic 55.0%
CAACACAAGCCGTAGCAGCT+GGG + Chr3:86662627-86662646 MsG0380016694.01.T01:intron 55.0%
CCGCCATCTGATGTTTCACC+AGG + Chr3:86660824-86660843 MsG0380016694.01.T01:CDS 55.0%
GACCCTAGCTATGCTCTGTG+CGG + Chr3:86658510-86658529 MsG0380016694.01.T01:CDS 55.0%
GCACAAAGCGCATCTGTGCA+AGG - Chr3:86662856-86662875 None:intergenic 55.0%
GGACTGTCAGATCAGTCTGG+AGG + Chr3:86662262-86662281 MsG0380016694.01.T01:intron 55.0%
GGGAGAAGGTAGTACGTACC+TGG - Chr3:86658413-86658432 None:intergenic 55.0%
GTACAGTTCCAAGGGAGGTC+AGG - Chr3:86661105-86661124 None:intergenic 55.0%
GTCAGGAGTCTCCAGTTCTC+TGG - Chr3:86661088-86661107 None:intergenic 55.0%
TCCCGCACAGAGCATAGCTA+GGG - Chr3:86658515-86658534 None:intergenic 55.0%
TGGTACAGTGCGTTTGTGGC+AGG + Chr3:86660738-86660757 MsG0380016694.01.T01:intron 55.0%
TTCCCGCACAGAGCATAGCT+AGG - Chr3:86658516-86658535 None:intergenic 55.0%
CAGCTGACACCCAGCTGCTA+CGG - Chr3:86662639-86662658 None:intergenic 60.0%
TGGAGACTCCTGACCTCCCT+TGG + Chr3:86661094-86661113 MsG0380016694.01.T01:intron 60.0%
CGTAGCAGCTGGGTGTCAGC+TGG + Chr3:86662637-86662656 MsG0380016694.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 86658177 86664522 86658177 ID=MsG0380016694.01;Name=MsG0380016694.01
Chr3 mRNA 86658177 86664522 86658177 ID=MsG0380016694.01.T01;Parent=MsG0380016694.01;Name=MsG0380016694.01.T01;_AED=0.49;_eAED=0.49;_QI=240|0.7|0.63|1|0.8|0.81|11|0|525
Chr3 exon 86658177 86658413 86658177 ID=MsG0380016694.01.T01:exon:21962;Parent=MsG0380016694.01.T01
Chr3 exon 86658492 86658626 86658492 ID=MsG0380016694.01.T01:exon:21963;Parent=MsG0380016694.01.T01
Chr3 exon 86658727 86658813 86658727 ID=MsG0380016694.01.T01:exon:21964;Parent=MsG0380016694.01.T01
Chr3 exon 86658941 86659012 86658941 ID=MsG0380016694.01.T01:exon:21965;Parent=MsG0380016694.01.T01
Chr3 exon 86659471 86659588 86659471 ID=MsG0380016694.01.T01:exon:21966;Parent=MsG0380016694.01.T01
Chr3 exon 86660760 86660845 86660760 ID=MsG0380016694.01.T01:exon:21967;Parent=MsG0380016694.01.T01
Chr3 exon 86661341 86661730 86661341 ID=MsG0380016694.01.T01:exon:21968;Parent=MsG0380016694.01.T01
Chr3 exon 86661828 86661998 86661828 ID=MsG0380016694.01.T01:exon:21969;Parent=MsG0380016694.01.T01
Chr3 exon 86663610 86663822 86663610 ID=MsG0380016694.01.T01:exon:21970;Parent=MsG0380016694.01.T01
Chr3 exon 86664016 86664173 86664016 ID=MsG0380016694.01.T01:exon:21971;Parent=MsG0380016694.01.T01
Chr3 exon 86664372 86664522 86664372 ID=MsG0380016694.01.T01:exon:21972;Parent=MsG0380016694.01.T01
Chr3 five_prime_UTR 86658177 86658413 86658177 ID=MsG0380016694.01.T01:five_prime_utr;Parent=MsG0380016694.01.T01
Chr3 five_prime_UTR 86658492 86658494 86658492 ID=MsG0380016694.01.T01:five_prime_utr;Parent=MsG0380016694.01.T01
Chr3 CDS 86658495 86658626 86658495 ID=MsG0380016694.01.T01:cds;Parent=MsG0380016694.01.T01
Chr3 CDS 86658727 86658813 86658727 ID=MsG0380016694.01.T01:cds;Parent=MsG0380016694.01.T01
Chr3 CDS 86658941 86659012 86658941 ID=MsG0380016694.01.T01:cds;Parent=MsG0380016694.01.T01
Chr3 CDS 86659471 86659588 86659471 ID=MsG0380016694.01.T01:cds;Parent=MsG0380016694.01.T01
Chr3 CDS 86660760 86660845 86660760 ID=MsG0380016694.01.T01:cds;Parent=MsG0380016694.01.T01
Chr3 CDS 86661341 86661730 86661341 ID=MsG0380016694.01.T01:cds;Parent=MsG0380016694.01.T01
Chr3 CDS 86661828 86661998 86661828 ID=MsG0380016694.01.T01:cds;Parent=MsG0380016694.01.T01
Chr3 CDS 86663610 86663822 86663610 ID=MsG0380016694.01.T01:cds;Parent=MsG0380016694.01.T01
Chr3 CDS 86664016 86664173 86664016 ID=MsG0380016694.01.T01:cds;Parent=MsG0380016694.01.T01
Chr3 CDS 86664372 86664522 86664372 ID=MsG0380016694.01.T01:cds;Parent=MsG0380016694.01.T01
Gene Sequence

>MsG0380016694.01.T01

ATGACTCAACTTGCAGACCCTAGCTATGCTCTGTGCGGGAAAAGCAAAGAAGCTGCGTTGAAATATAAGCAGCTTGGTAATCAATGCTTCTCTAATGCTGATTATGTCAAGGCTTTAGATTATTATACTCAGGCATTACGAAAGGCTCCTTTTGAAGTTGGTGAAATTGAAAATAATCTCATTGCAACTTTGTATATCAATCGAGCTACTGTATTGCATAAAATGAATCTTTCAGTAGAATGTTTGCGCGACTGTGATCGAGCTCTTCAGATATGTCCAAGCTATTCAAAGGCATGGTATAGGAGAGGAAAGGCAAATATTGCATTGGGAAATAATAGAGATGCAATCTGTGACTTAAATATAGCTAAGAGTGTCGAATCATCAACAGGAGGGAAGCGACAAATAGAATGTGAGATGCCTCAAATAAAGCTGCAAAGTGTCTCCGTACCTGATAAAGGAAGAGGCATGGTGCGCCGCCATCTGATGTTTCACCAGGTAATATTAAAGCAATGTCGTGAAACTCATTGCCATTATTGCTTGAACGACCTACCTGCTGATAGAGTTCCTTGTATATCGTGTTCAATACCATTGTACTGCTCGCACCAATGCCAAATAAAGGCAGGTGGGCAAATGTTCATGATATCCACAGAAGATAATTACGTTCTTAAAAACTTACCCAACAATCTTGCTGAATATGCTGCTGAAGTGATTCAATACAATGATTGTGAGCAAAAGATTGGTAATGTTACTGAACATAAACATGAATGTCAAGGAGTGCATTGGCCTGCTGTACTGCCTTCTGACATAGTTTTGGCTGGCAGACTTCTAGCGAAGTTTTTGTCAAAGAACTCATCTGGAGATATCACAAGTTTTGTGGAAAAGTTGGAGCTTTCTCATTGTTACGAACATATGCCATTTGAAAGTAAATTGGATTCACATTTGTACGCCATTGTATTGTTATATGTCTTAAACATTCTTATGGAGCTATGCTTGCCATCAATGGAATCTCTATATCACAGGTTGTTTTGGCACTCTTTTTTTCCTTTGTTTTTTTGGGTTGGGTTGTGGGATTGTAAAGATCGCCAAAGTTTTCTAAAAGATGAATACGCATTTCATTGTCAATGTACTGGTTGTTCAGAAGTCAATCTATCTGACATCGTCCTCAATGCTTTTCATTGTGTGAACCCAAATTGTTCTGGCGCAGTGTTGGAAAGCAGAGTACTTGAATGTGAAAAGCAGAAAATCAAACACCTAGCTGTTGCTGATAAAGTTATCAAGAACGATGACATCTATGAAGTTTGTCTTCAATTTAACCAAAATGACGCTTCTATTCATATTCAACCTGGAGTCTGTTTGAAATGCAGTTCTTACCGTGATCTGGAGTCTTCACGTGCAACAGTTGATAAAGCCTTAATATGCATAAAAAGGCTGCAGGATGCAATACTGTCAAAAGAAATTTCAAATACTTCCATTTCAGACGCTTTGAGATCTCTTCATTTGCTGAGATCAAATTTGCATGCATACAATAAGGTTATTGCAGAGGTGAGTTCAAGCCTTCACAAAAGTTCTCCATCCTAA

Protein sequence

>MsG0380016694.01.T01

MTQLADPSYALCGKSKEAALKYKQLGNQCFSNADYVKALDYYTQALRKAPFEVGEIENNLIATLYINRATVLHKMNLSVECLRDCDRALQICPSYSKAWYRRGKANIALGNNRDAICDLNIAKSVESSTGGKRQIECEMPQIKLQSVSVPDKGRGMVRRHLMFHQVILKQCRETHCHYCLNDLPADRVPCISCSIPLYCSHQCQIKAGGQMFMISTEDNYVLKNLPNNLAEYAAEVIQYNDCEQKIGNVTEHKHECQGVHWPAVLPSDIVLAGRLLAKFLSKNSSGDITSFVEKLELSHCYEHMPFESKLDSHLYAIVLLYVLNILMELCLPSMESLYHRLFWHSFFPLFFWVGLWDCKDRQSFLKDEYAFHCQCTGCSEVNLSDIVLNAFHCVNPNCSGAVLESRVLECEKQKIKHLAVADKVIKNDDIYEVCLQFNQNDASIHIQPGVCLKCSSYRDLESSRATVDKALICIKRLQDAILSKEISNTSISDALRSLHLLRSNLHAYNKVIAEVSSSLHKSSPS*