AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018235.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018235.01.T01 MTR_4g007970 97.066 409 11 1 1 408 1 409 0.0 820
MsG0480018235.01.T01 MTR_0018s0170 69.458 406 118 3 8 407 13 418 0.0 593
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018235.01.T01 AT1G51540 75.495 404 90 4 13 407 11 414 0.0 639
MsG0480018235.01.T01 AT3G27220 62.745 408 137 3 13 406 20 426 0.0 545

Find 103 sgRNAs with CRISPR-Local

Find 331 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACAACTCTAGTTGGATTT+TGG 0.130657 4:+2023756 MsG0480018235.01.T01:CDS
GAGATTAGAAAGAGGGAAAT+AGG 0.188949 4:-2018921 None:intergenic
AATGATCGTCTTTATGTTCT+TGG 0.209886 4:+2022332 MsG0480018235.01.T01:CDS
GTGATCTGCGTCGGACTTCT+AGG 0.218500 4:+2018851 MsG0480018235.01.T01:CDS
CTTCACCTTTGCTGCAATTT+CGG 0.235498 4:-2023938 None:intergenic
GAAATGGCACATTCACATTT+AGG 0.243377 4:+2020512 MsG0480018235.01.T01:CDS
TCAATATGTGAGTTTGGTTT+TGG 0.271476 4:-2022613 None:intergenic
AACAATTCCATTGTTATTGC+TGG 0.285172 4:+2022655 MsG0480018235.01.T01:CDS
ACCTGCTCCTCAACTTGTTT+GGG 0.304175 4:+2019030 MsG0480018235.01.T01:CDS
GCAAATTCAATATGTGAGTT+TGG 0.314174 4:-2022619 None:intergenic
TACCTGCTCCTCAACTTGTT+TGG 0.320322 4:+2019029 MsG0480018235.01.T01:CDS
CCAAAGTATTCAAGTTAAAC+TGG 0.328184 4:-2022735 None:intergenic
GTGAGGTCCTCCGCGGGGAA+TGG 0.334922 4:-2021718 None:intergenic
TGTGAATGTGCCATTTCTTT+TGG 0.343344 4:-2020506 None:intergenic
AAAAGTGGGTTCCGCCAAAT+TGG 0.343439 4:+2018826 MsG0480018235.01.T01:CDS
GCACCCTGAAACCAAGAAAA+TGG 0.346126 4:+2022693 MsG0480018235.01.T01:CDS
TCACCTGTTCCTAGACTTGA+TGG 0.347002 4:+2019067 MsG0480018235.01.T01:CDS
GACGCAGATCACAACCAATT+TGG 0.367182 4:-2018840 None:intergenic
GGCTGGTTGTACTTCACTTC+AGG 0.372763 4:+2023782 MsG0480018235.01.T01:CDS
CCTCTCCAAAGTTGAGTTGC+CGG 0.377037 4:-2021579 None:intergenic
TGACATCCACACAAACAGTT+AGG 0.384286 4:+2024133 MsG0480018235.01.T01:three_prime_UTR
TGAGGTCCTCCGCGGGGAAT+GGG 0.389918 4:-2021717 None:intergenic
TATATAGTCAATGGGCAGTA+TGG 0.395192 4:+2020560 MsG0480018235.01.T01:CDS
AATTCAGTATTCACTGAGAA+TGG 0.436453 4:+2024005 MsG0480018235.01.T01:three_prime_UTR
ATAAAGAATATGTAATATAT+CGG 0.437907 4:-2023964 None:intergenic
TCCCAAACAAGTTGAGGAGC+AGG 0.438279 4:-2019031 None:intergenic
CCAGTTTAACTTGAATACTT+TGG 0.440901 4:+2022735 MsG0480018235.01.T01:CDS
AACGACGGTGGTGAATGATA+TGG 0.448322 4:+2018790 MsG0480018235.01.T01:exon
GGTTCGTGCGTCGGTAAAAG+TGG 0.450556 4:+2018811 MsG0480018235.01.T01:CDS
AGATACATTTATATAGTCAA+TGG 0.456594 4:+2020551 MsG0480018235.01.T01:CDS
TATGTTCTTGGTGGTCAAGA+AGG 0.468117 4:+2022344 MsG0480018235.01.T01:CDS
TTCCTCCTTTGCCAGTCCCT+AGG 0.473612 4:+2020651 MsG0480018235.01.T01:CDS
TGGAGTCTTGCTGTCAAGAA+TGG 0.473803 4:+2021660 MsG0480018235.01.T01:CDS
TGAAGAAGCCCATAGAAAAT+CGG 0.474601 4:-2018888 None:intergenic
CGGGTGAAAACAACTCTAGT+TGG 0.475974 4:+2023749 MsG0480018235.01.T01:CDS
GATCGTCTTTATGTTCTTGG+TGG 0.479295 4:+2022335 MsG0480018235.01.T01:CDS
AAGAACATAAAGACGATCAT+TGG 0.484359 4:-2022330 None:intergenic
TCGCAGAAGTGGTCTGTGAT+TGG 0.494720 4:+2023713 MsG0480018235.01.T01:intron
TCATCCAACATGTAAACATC+AGG 0.495238 4:-2022559 None:intergenic
ATGCACCGGCAACTCAACTT+TGG 0.502325 4:+2021574 MsG0480018235.01.T01:CDS
TATAGTTACATTATTAATGT+CGG 0.505269 4:-2019137 None:intergenic
GAAGCTTTGAGATTAGAAAG+AGG 0.508830 4:-2018929 None:intergenic
CACCACCCTAACTGTTTGTG+TGG 0.510534 4:-2024139 None:intergenic
AAGCTTTGAGATTAGAAAGA+GGG 0.513615 4:-2018928 None:intergenic
GATACATTTATATAGTCAAT+GGG 0.516300 4:+2020552 MsG0480018235.01.T01:CDS
CTCTTTAGGGACAATGATTG+TGG 0.517136 4:-2018951 None:intergenic
AGGTGGGACCTCTACATTGT+GGG 0.517328 4:-2020583 None:intergenic
GAAAGAGGGAAATAGGAAGA+TGG 0.519273 4:-2018914 None:intergenic
GCACCATCAAGTCTAGGAAC+AGG 0.519537 4:-2019070 None:intergenic
GAGAGGTCGATTGCATGTAA+TGG 0.523115 4:+2021596 MsG0480018235.01.T01:CDS
AGAGGTCGATTGCATGTAAT+GGG 0.523894 4:+2021597 MsG0480018235.01.T01:CDS
GAATGGAAAAGCATTAGAAA+AGG 0.526434 4:+2021677 MsG0480018235.01.T01:CDS
ACTCACATATTGAATTTGCA+TGG 0.528766 4:+2022623 MsG0480018235.01.T01:CDS
GAACCTGTGAGGTCCTCCGC+GGG 0.532659 4:-2021724 None:intergenic
AAAAGGTTGTTGGAGATATG+TGG 0.533601 4:+2023840 MsG0480018235.01.T01:CDS
AGACTCCAATGTTCTAATCC+AGG 0.535412 4:-2021645 None:intergenic
TTCCCCGCGGAGGACCTCAC+AGG 0.535632 4:+2021721 MsG0480018235.01.T01:CDS
CATTTAGGAATGGCGACAGA+TGG 0.535771 4:+2020527 MsG0480018235.01.T01:CDS
GAAAAGCATTAGAAAAGGAG+TGG 0.542116 4:+2021682 MsG0480018235.01.T01:CDS
GACATCCACACAAACAGTTA+GGG 0.552339 4:+2024134 MsG0480018235.01.T01:three_prime_UTR
CTCACATATTGAATTTGCAT+GGG 0.558890 4:+2022624 MsG0480018235.01.T01:CDS
GCAATCCGAAATTGCAGCAA+AGG 0.561608 4:+2023933 MsG0480018235.01.T01:three_prime_UTR
GAATGATATGGTTCGTGCGT+CGG 0.564206 4:+2018802 MsG0480018235.01.T01:exon
GGCACATTCACATTTAGGAA+TGG 0.569145 4:+2020517 MsG0480018235.01.T01:CDS
TGATTGGAAAGTTACCATAC+CGG 0.569982 4:+2023729 MsG0480018235.01.T01:CDS
TGTTTCCGTGTCAAGTACAA+AGG 0.572319 4:-2020612 None:intergenic
TTTGATGATGGAACTTGGGG+AGG 0.574262 4:+2020470 MsG0480018235.01.T01:CDS
AATTCCATTGTTATTGCTGG+AGG 0.576103 4:+2022658 MsG0480018235.01.T01:CDS
ATATATACATACCTAGGGAC+TGG 0.577408 4:-2020662 None:intergenic
CTATCCTGATGTTTACATGT+TGG 0.581139 4:+2022555 MsG0480018235.01.T01:CDS
ATACACCTGGATTAGAACAT+TGG 0.581948 4:+2021640 MsG0480018235.01.T01:CDS
TAAATGCTCGCGCAGGATGG+AGG 0.584038 4:+2022400 MsG0480018235.01.T01:CDS
GCAGATCACAACCAATTTGG+CGG 0.587746 4:-2018837 None:intergenic
TGATACCTTTGTACTTGACA+CGG 0.599828 4:+2020607 MsG0480018235.01.T01:CDS
AAATTGCAGCAAAGGTGAAG+AGG 0.599908 4:+2023941 MsG0480018235.01.T01:three_prime_UTR
ATAGCAGCACCATCAAGTCT+AGG 0.602814 4:-2019076 None:intergenic
AAATTGGTTGTGATCTGCGT+CGG 0.603223 4:+2018842 MsG0480018235.01.T01:CDS
GTTCGTGCGTCGGTAAAAGT+GGG 0.607211 4:+2018812 MsG0480018235.01.T01:CDS
CACTTCAGGACAGAGAGACA+AGG 0.609550 4:+2023796 MsG0480018235.01.T01:CDS
AAGTACAAAGGTATCAGAGG+TGG 0.611306 4:-2020600 None:intergenic
ACATACCTAGGGACTGGCAA+AGG 0.618922 4:-2020656 None:intergenic
TACCTAGGGACTGGCAAAGG+AGG 0.621877 4:-2020653 None:intergenic
CAGTATGGCCCACAATGTAG+AGG 0.627150 4:+2020575 MsG0480018235.01.T01:CDS
TGTTGGATGACGAGATGAAG+TGG 0.632038 4:+2022572 MsG0480018235.01.T01:CDS
GTCAAGTACAAAGGTATCAG+AGG 0.634465 4:-2020603 None:intergenic
AAAGAGAATCGACATACACC+TGG 0.643815 4:+2021627 MsG0480018235.01.T01:CDS
GATTGGAAAGTTACCATACC+GGG 0.648829 4:+2023730 MsG0480018235.01.T01:CDS
TTGACACGGAAACAAAGCAA+TGG 0.649372 4:+2020621 MsG0480018235.01.T01:CDS
AGTACAAAGGTATCAGAGGT+GGG 0.650373 4:-2020599 None:intergenic
GAGGTGGGACCTCTACATTG+TGG 0.657473 4:-2020584 None:intergenic
ATCCACACAAACAGTTAGGG+TGG 0.660165 4:+2024137 MsG0480018235.01.T01:three_prime_UTR
ACTTCAGGACAGAGAGACAA+GGG 0.669595 4:+2023797 MsG0480018235.01.T01:CDS
TGTGCCTCCAGCAATAACAA+TGG 0.669691 4:-2022662 None:intergenic
GGTCGATTGCATGTAATGGG+TGG 0.672590 4:+2021600 MsG0480018235.01.T01:CDS
CGAACCTGTGAGGTCCTCCG+CGG 0.690395 4:-2021725 None:intergenic
ACGGAAACAAAGCAATGGAG+CGG 0.691573 4:+2020626 MsG0480018235.01.T01:CDS
CCGGCAACTCAACTTTGGAG+AGG 0.698757 4:+2021579 MsG0480018235.01.T01:CDS
TATAAAGCAACGAACCTGTG+AGG 0.705953 4:-2021735 None:intergenic
GAGATACCCATTCCCCGCGG+AGG 0.716106 4:+2021711 MsG0480018235.01.T01:CDS
AACCTGTGAGGTCCTCCGCG+GGG 0.745419 4:-2021723 None:intergenic
ACAAGAGTGAATTCTAACGA+CGG 0.748043 4:+2018775 MsG0480018235.01.T01:five_prime_UTR
AGAGTGAATTCTAACGACGG+TGG 0.754793 4:+2018778 MsG0480018235.01.T01:five_prime_UTR
AGTGAGATACCCATTCCCCG+CGG 0.804899 4:+2021708 MsG0480018235.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAGAATATGTAATATAT+CGG - Chr4:2023967-2023986 None:intergenic 10.0%
!!! GATATATAAAAAGTATAAAT+TGG - Chr4:2024225-2024244 None:intergenic 10.0%
!! AAAAAAATATCGATAACAAT+AGG - Chr4:2021791-2021810 None:intergenic 15.0%
!! AAATGAATATAGAGTTAAAA+AGG - Chr4:2021900-2021919 None:intergenic 15.0%
!! TATAGTTACATTATTAATGT+CGG - Chr4:2019140-2019159 None:intergenic 15.0%
!!! ACTGATTAATATCATATTTT+AGG + Chr4:2022294-2022313 MsG0480018235.01.T01:intron 15.0%
!!! CTGATTAATATCATATTTTA+GGG + Chr4:2022295-2022314 MsG0480018235.01.T01:intron 15.0%
!!! GATATATATAATTTTGATGA+TGG + Chr4:2020458-2020477 MsG0480018235.01.T01:CDS 15.0%
!! AAATAAAGATTAGAATGTGT+TGG - Chr4:2022176-2022195 None:intergenic 20.0%
!! AACAAAAACAAAAACAAATG+TGG - Chr4:2020721-2020740 None:intergenic 20.0%
!! AATTAGCTGAAAATAGTTTA+TGG + Chr4:2019882-2019901 MsG0480018235.01.T01:intron 20.0%
!! ACAATTTAAATGAAGCATAA+GGG - Chr4:2022053-2022072 None:intergenic 20.0%
!! ACCGATTAATATCATATTAT+AGG + Chr4:2022256-2022275 MsG0480018235.01.T01:intron 20.0%
!! AGATACATTTATATAGTCAA+TGG + Chr4:2020551-2020570 MsG0480018235.01.T01:CDS 20.0%
!! ATAAATCTAGTAAGATGATT+AGG + Chr4:2023284-2023303 MsG0480018235.01.T01:intron 20.0%
!! ATTAGCTGAAAATAGTTTAT+GGG + Chr4:2019883-2019902 MsG0480018235.01.T01:intron 20.0%
!! CAACATAAAGAACTATAAAA+TGG - Chr4:2020848-2020867 None:intergenic 20.0%
!! CCCTATAATATGATATTAAT+CGG - Chr4:2022260-2022279 None:intergenic 20.0%
!! CCGATTAATATCATATTATA+GGG + Chr4:2022257-2022276 MsG0480018235.01.T01:intron 20.0%
!! GATACATTTATATAGTCAAT+GGG + Chr4:2020552-2020571 MsG0480018235.01.T01:CDS 20.0%
!! TTTCTGATATTTCTTTGTAA+TGG + Chr4:2020765-2020784 MsG0480018235.01.T01:intron 20.0%
!!! AATGTAATTTTTCTTGTATC+TGG + Chr4:2021506-2021525 MsG0480018235.01.T01:intron 20.0%
!!! ACAATGTTATACTCAATTTT+AGG + Chr4:2021550-2021569 MsG0480018235.01.T01:intron 20.0%
!!! ATTCATTTTAATTTCTCCAA+TGG + Chr4:2021912-2021931 MsG0480018235.01.T01:intron 20.0%
!!! ATTTTTAAGCTTAGTCTATT+CGG - Chr4:2021181-2021200 None:intergenic 20.0%
!!! GTTATATTATTGTGTTTTTC+AGG + Chr4:2020421-2020440 MsG0480018235.01.T01:intron 20.0%
!!! TATTATTTTTAAGCTTGCTA+AGG + Chr4:2019351-2019370 MsG0480018235.01.T01:intron 20.0%
!!! TGAATTTTCAAAGAAGTTAT+GGG + Chr4:2021058-2021077 MsG0480018235.01.T01:intron 20.0%
!!! TTCATTTTAATTTCTCCAAT+GGG + Chr4:2021913-2021932 MsG0480018235.01.T01:intron 20.0%
!!! TTGAATTTTCAAAGAAGTTA+TGG + Chr4:2021057-2021076 MsG0480018235.01.T01:intron 20.0%
!!! TTGTTTTCATTTAAGCTATT+AGG + Chr4:2019826-2019845 MsG0480018235.01.T01:intron 20.0%
! ACATTCATATATACATACCT+AGG - Chr4:2020671-2020690 None:intergenic 25.0%
! ACGTTTGAAAGAACTTATAT+GGG - Chr4:2020387-2020406 None:intergenic 25.0%
! ACTGGTAATTTCTTTCTTAA+TGG - Chr4:2020920-2020939 None:intergenic 25.0%
! AGTTAAGGACTTATTGAATA+AGG + Chr4:2019711-2019730 MsG0480018235.01.T01:intron 25.0%
! CACAATTTAAATGAAGCATA+AGG - Chr4:2022054-2022073 None:intergenic 25.0%
! CATTCATATATACATACCTA+GGG - Chr4:2020670-2020689 None:intergenic 25.0%
! GATTTCAGAATATAGAGAAA+GGG - Chr4:2023023-2023042 None:intergenic 25.0%
! GTTAAGGACTTATTGAATAA+GGG + Chr4:2019712-2019731 MsG0480018235.01.T01:intron 25.0%
! TAAAATAAGCTCAATCCAAA+CGG + Chr4:2019475-2019494 MsG0480018235.01.T01:intron 25.0%
! TAATATCATATTATAGGGCT+TGG + Chr4:2022262-2022281 MsG0480018235.01.T01:intron 25.0%
! TGATTTCAGAATATAGAGAA+AGG - Chr4:2023024-2023043 None:intergenic 25.0%
! TGCTTATAAACAACTTATCT+AGG - Chr4:2019970-2019989 None:intergenic 25.0%
! TGTTCTATCATGATATTCAA+GGG - Chr4:2020958-2020977 None:intergenic 25.0%
! TTATCTTCAACTATTTGAGT+TGG + Chr4:2021030-2021049 MsG0480018235.01.T01:intron 25.0%
! TTCCATGAAATCAGATAAAA+AGG - Chr4:2021820-2021839 None:intergenic 25.0%
! TTTGATATGTAGCTTAGTTA+AGG + Chr4:2019696-2019715 MsG0480018235.01.T01:intron 25.0%
!! AGTTTTTATGTTAAGGTTCT+TGG + Chr4:2023392-2023411 MsG0480018235.01.T01:intron 25.0%
!! CAATGTCTTTTACAAAGTAA+AGG - Chr4:2024115-2024134 None:intergenic 25.0%
!! GAATGCAAGTTTTTATGTTA+AGG + Chr4:2023385-2023404 MsG0480018235.01.T01:intron 25.0%
!! GAATTTTCAAAGAAGTTATG+GGG + Chr4:2021059-2021078 MsG0480018235.01.T01:intron 25.0%
!! GACATATACATCATACATTT+TGG - Chr4:2022222-2022241 None:intergenic 25.0%
!! GCAAATTAGTTAGATTAGTT+TGG + Chr4:2019518-2019537 MsG0480018235.01.T01:intron 25.0%
!! GTAAATCTGTCTTTTGTATA+AGG - Chr4:2024064-2024083 None:intergenic 25.0%
!! TACCTTTTTATCTGATTTCA+TGG + Chr4:2021815-2021834 MsG0480018235.01.T01:intron 25.0%
!! TATCTTCAACTATTTGAGTT+GGG + Chr4:2021031-2021050 MsG0480018235.01.T01:intron 25.0%
!! TCTTTTGTTCTTTCTCTTTA+GGG - Chr4:2018967-2018986 None:intergenic 25.0%
!! TTCTTTTGTTCTTTCTCTTT+AGG - Chr4:2018968-2018987 None:intergenic 25.0%
!!! AATTCAAAATTTTGAAACCC+GGG - Chr4:2023249-2023268 None:intergenic 25.0%
!!! ACCAAGAAAATGGTTTTAAA+TGG + Chr4:2022703-2022722 MsG0480018235.01.T01:CDS 25.0%
!!! ATAATTTTGATGATGGAACT+TGG + Chr4:2020465-2020484 MsG0480018235.01.T01:CDS 25.0%
!!! ATACAGTTTTTCAAGTGATT+AGG + Chr4:2022106-2022125 MsG0480018235.01.T01:intron 25.0%
!!! ATAGTTCTTTATGTTGCTTT+AGG + Chr4:2020852-2020871 MsG0480018235.01.T01:intron 25.0%
!!! ATTTTTCTTGTATCTGGTTT+TGG + Chr4:2021512-2021531 MsG0480018235.01.T01:intron 25.0%
!!! CAATTCAAAATTTTGAAACC+CGG - Chr4:2023250-2023269 None:intergenic 25.0%
!!! GTTATGAATTTTTTAGTGTG+TGG + Chr4:2021960-2021979 MsG0480018235.01.T01:intron 25.0%
!!! TAATTTTGATGATGGAACTT+GGG + Chr4:2020466-2020485 MsG0480018235.01.T01:CDS 25.0%
!!! TACAGTTTTTCAAGTGATTA+GGG + Chr4:2022107-2022126 MsG0480018235.01.T01:intron 25.0%
!!! TAGTTAGATTAGTTTCTAGT+TGG - Chr4:2019576-2019595 None:intergenic 25.0%
!!! TCCATTTAAAACCATTTTCT+TGG - Chr4:2022707-2022726 None:intergenic 25.0%
!!! TTTTTGCTATAAGAAAATCG+TGG + Chr4:2021360-2021379 MsG0480018235.01.T01:intron 25.0%
AAAATAAGCTCAATCCAAAC+GGG + Chr4:2019476-2019495 MsG0480018235.01.T01:intron 30.0%
AAACAAAAACAAATGTGGTG+TGG - Chr4:2020716-2020735 None:intergenic 30.0%
AACTTACAGAAGAGCTTAAT+TGG + Chr4:2020347-2020366 MsG0480018235.01.T01:intron 30.0%
AACTTGCAACTAATGTAACT+AGG + Chr4:2019595-2019614 MsG0480018235.01.T01:intron 30.0%
AAGAACATAAAGACGATCAT+TGG - Chr4:2022333-2022352 None:intergenic 30.0%
AATGATCGTCTTTATGTTCT+TGG + Chr4:2022332-2022351 MsG0480018235.01.T01:CDS 30.0%
AATTCAGTATTCACTGAGAA+TGG + Chr4:2024005-2024024 MsG0480018235.01.T01:three_prime_UTR 30.0%
ACATAAAAACTTGCATTCAG+TGG - Chr4:2023383-2023402 None:intergenic 30.0%
ACATGCTGAAATAACTGAAA+TGG - Chr4:2022899-2022918 None:intergenic 30.0%
ACTCACATATTGAATTTGCA+TGG + Chr4:2022623-2022642 MsG0480018235.01.T01:CDS 30.0%
AGTAATATGACAGAGTGAAA+AGG - Chr4:2023421-2023440 None:intergenic 30.0%
ATAGAAATGCTAGAGCTTAA+AGG - Chr4:2023555-2023574 None:intergenic 30.0%
ATTAATCGGTAACAAATAGC+AGG - Chr4:2022246-2022265 None:intergenic 30.0%
CACGTTTGAAAGAACTTATA+TGG - Chr4:2020388-2020407 None:intergenic 30.0%
CATGCTGAAATAACTGAAAT+GGG - Chr4:2022898-2022917 None:intergenic 30.0%
CTCACATATTGAATTTGCAT+GGG + Chr4:2022624-2022643 MsG0480018235.01.T01:CDS 30.0%
CTGTAGTCAATGAGAAAATA+CGG + Chr4:2019798-2019817 MsG0480018235.01.T01:intron 30.0%
CTGTTCTATCATGATATTCA+AGG - Chr4:2020959-2020978 None:intergenic 30.0%
GAATATCATGATAGAACAGT+TGG + Chr4:2020960-2020979 MsG0480018235.01.T01:intron 30.0%
GAGACATGGAAAAACATTTA+AGG + Chr4:2021259-2021278 MsG0480018235.01.T01:intron 30.0%
GCAAATTCAATATGTGAGTT+TGG - Chr4:2022622-2022641 None:intergenic 30.0%
TAAATTGAGTCAATCCAAAC+AGG - Chr4:2019302-2019321 None:intergenic 30.0%
TAGAAATGTACATATCCCAT+TGG - Chr4:2021931-2021950 None:intergenic 30.0%
TCATTGTTTATTGTCATGTC+AGG + Chr4:2022528-2022547 MsG0480018235.01.T01:intron 30.0%
TGAAGAACTAGACACTAAAA+AGG - Chr4:2023527-2023546 None:intergenic 30.0%
TGATATCAATATCCTACATC+AGG - Chr4:2020809-2020828 None:intergenic 30.0%
TGTAAGCTATTCATCTTACT+CGG - Chr4:2020271-2020290 None:intergenic 30.0%
TTATTGAATAAGGGTCTGTT+TGG + Chr4:2019721-2019740 MsG0480018235.01.T01:intron 30.0%
TTGAATGTAATCACATGCAT+CGG - Chr4:2023129-2023148 None:intergenic 30.0%
TTGATGAACAGAGATAAGAT+GGG - Chr4:2021008-2021027 None:intergenic 30.0%
TTGCATATTGACAGCAAATT+AGG - Chr4:2023625-2023644 None:intergenic 30.0%
TTTGATGAACAGAGATAAGA+TGG - Chr4:2021009-2021028 None:intergenic 30.0%
! AAAACCATTTTCTTGGTTTC+AGG - Chr4:2022700-2022719 None:intergenic 30.0%
! AAACAACTCTAGTTGGATTT+TGG + Chr4:2023756-2023775 MsG0480018235.01.T01:CDS 30.0%
! AAACCATTTTCTTGGTTTCA+GGG - Chr4:2022699-2022718 None:intergenic 30.0%
! AACAATTCCATTGTTATTGC+TGG + Chr4:2022655-2022674 MsG0480018235.01.T01:CDS 30.0%
! CCAAAGTATTCAAGTTAAAC+TGG - Chr4:2022738-2022757 None:intergenic 30.0%
! CTATAAGAAAATCGTGGTTT+TGG + Chr4:2021366-2021385 MsG0480018235.01.T01:intron 30.0%
! CTTTGACATTTTTCACTGAA+TGG - Chr4:2023446-2023465 None:intergenic 30.0%
! GCTATGGAGCTTTTATAATT+TGG + Chr4:2022979-2022998 MsG0480018235.01.T01:intron 30.0%
! TGTCTTTTACAAAGTAAAGG+AGG - Chr4:2024112-2024131 None:intergenic 30.0%
! TTCGTACTTTTGAACCATTT+TGG + Chr4:2021849-2021868 MsG0480018235.01.T01:intron 30.0%
! TTTTGACATGCCAAAAGAAA+TGG + Chr4:2020496-2020515 MsG0480018235.01.T01:CDS 30.0%
!! AAAGTTAGGTTGATCACAAA+AGG - Chr4:2022473-2022492 None:intergenic 30.0%
!! AAGCTTTGAGATTAGAAAGA+GGG - Chr4:2018931-2018950 None:intergenic 30.0%
!! AATCTTTTCTTCGTTTTTGC+TGG + Chr4:2019109-2019128 MsG0480018235.01.T01:CDS 30.0%
!! CCAGTTTAACTTGAATACTT+TGG + Chr4:2022735-2022754 MsG0480018235.01.T01:CDS 30.0%
!! GAATGGAAAAGCATTAGAAA+AGG + Chr4:2021677-2021696 MsG0480018235.01.T01:CDS 30.0%
!! TAAGTTTTTCGACGATCTTA+CGG - Chr4:2020333-2020352 None:intergenic 30.0%
!! TCAATATGTGAGTTTGGTTT+TGG - Chr4:2022616-2022635 None:intergenic 30.0%
!! TTCACTAGTTTGACTTTTAG+TGG + Chr4:2021227-2021246 MsG0480018235.01.T01:intron 30.0%
!!! AATTTTGATGATGGAACTTG+GGG + Chr4:2020467-2020486 MsG0480018235.01.T01:CDS 30.0%
!!! AGATTTACTCACCTTTTTTG+AGG + Chr4:2024076-2024095 MsG0480018235.01.T01:three_prime_UTR 30.0%
!!! ATATCTCCAACAACCTTTTT+TGG - Chr4:2023839-2023858 None:intergenic 30.0%
AAAAGGTTGTTGGAGATATG+TGG + Chr4:2023840-2023859 MsG0480018235.01.T01:CDS 35.0%
AAATAAGCTCAATCCAAACG+GGG + Chr4:2019477-2019496 MsG0480018235.01.T01:intron 35.0%
ACAAGAGTGAATTCTAACGA+CGG + Chr4:2018775-2018794 MsG0480018235.01.T01:five_prime_UTR 35.0%
AGACACTAAAAAGGACTCAA+GGG - Chr4:2023518-2023537 None:intergenic 35.0%
AGTTGCTTCTAACATTGAAG+AGG + Chr4:2020230-2020249 MsG0480018235.01.T01:intron 35.0%
ATATATACATACCTAGGGAC+TGG - Chr4:2020665-2020684 None:intergenic 35.0%
ATGTGTTGGACTCAAATGAT+AGG - Chr4:2022162-2022181 None:intergenic 35.0%
CATTTAAAAATAGGTGACCC+GGG - Chr4:2022386-2022405 None:intergenic 35.0%
CGAAACTCAAACACATTAAG+GGG + Chr4:2019224-2019243 MsG0480018235.01.T01:intron 35.0%
CTAATTCCAATAAGTACTCC+AGG - Chr4:2019868-2019887 None:intergenic 35.0%
CTACACTTGAATGACAGTAT+GGG + Chr4:2023340-2023359 MsG0480018235.01.T01:intron 35.0%
CTATCCTGATGTTTACATGT+TGG + Chr4:2022555-2022574 MsG0480018235.01.T01:CDS 35.0%
GAAATGGCACATTCACATTT+AGG + Chr4:2020512-2020531 MsG0480018235.01.T01:CDS 35.0%
GAGATTAGAAAGAGGGAAAT+AGG - Chr4:2018924-2018943 None:intergenic 35.0%
GCATTTAAAAATAGGTGACC+CGG - Chr4:2022387-2022406 None:intergenic 35.0%
GCGAAACTCAAACACATTAA+GGG + Chr4:2019223-2019242 MsG0480018235.01.T01:intron 35.0%
GTGTTAAACCATGTAGTACT+GGG + Chr4:2022071-2022090 MsG0480018235.01.T01:intron 35.0%
TAGACACTAAAAAGGACTCA+AGG - Chr4:2023519-2023538 None:intergenic 35.0%
TATATAGTCAATGGGCAGTA+TGG + Chr4:2020560-2020579 MsG0480018235.01.T01:CDS 35.0%
TATCATCTGAGTTGTACGTA+CGG + Chr4:2019623-2019642 MsG0480018235.01.T01:intron 35.0%
TATTATCAATGTCGCAGAAG+TGG + Chr4:2023702-2023721 MsG0480018235.01.T01:intron 35.0%
TCATCCAACATGTAAACATC+AGG - Chr4:2022562-2022581 None:intergenic 35.0%
TCCTTAAAAATGCTAGTGAG+TGG - Chr4:2019672-2019691 None:intergenic 35.0%
TGAAGAAGCCCATAGAAAAT+CGG - Chr4:2018891-2018910 None:intergenic 35.0%
TGATACCTTTGTACTTGACA+CGG + Chr4:2020607-2020626 MsG0480018235.01.T01:CDS 35.0%
TGATGATCCATCACCAAAAA+AGG + Chr4:2023823-2023842 MsG0480018235.01.T01:CDS 35.0%
TGATTGGAAAGTTACCATAC+CGG + Chr4:2023729-2023748 MsG0480018235.01.T01:CDS 35.0%
TGTGTTAAACCATGTAGTAC+TGG + Chr4:2022070-2022089 MsG0480018235.01.T01:intron 35.0%
TGTTAAACCATGTAGTACTG+GGG + Chr4:2022072-2022091 MsG0480018235.01.T01:intron 35.0%
TGTTAGCATTATGACCTGTT+TGG + Chr4:2019285-2019304 MsG0480018235.01.T01:intron 35.0%
TTATAAAAGCTCCATAGCTG+TGG - Chr4:2022977-2022996 None:intergenic 35.0%
TTCCTTTACACCATTTCACA+CGG + Chr4:2023467-2023486 MsG0480018235.01.T01:intron 35.0%
TTGTTTATTGTCATGTCAGG+TGG + Chr4:2022531-2022550 MsG0480018235.01.T01:intron 35.0%
TTTAGGAGGTGGTAAATACT+GGG + Chr4:2020869-2020888 MsG0480018235.01.T01:intron 35.0%
! AATTCCATTGTTATTGCTGG+AGG + Chr4:2022658-2022677 MsG0480018235.01.T01:CDS 35.0%
! ATACACCTGGATTAGAACAT+TGG + Chr4:2021640-2021659 MsG0480018235.01.T01:CDS 35.0%
! ATCTTTTCCCAAACAAGTTG+AGG - Chr4:2019040-2019059 None:intergenic 35.0%
! GTAGCTTGTGTCATAACTTA+TGG + Chr4:2023578-2023597 MsG0480018235.01.T01:intron 35.0%
! GTCTTTAGATGTCATTTGCT+GGG + Chr4:2021396-2021415 MsG0480018235.01.T01:intron 35.0%
! TCCACTCACTAGCATTTTTA+AGG + Chr4:2019668-2019687 MsG0480018235.01.T01:intron 35.0%
! TGGTCAAGAAGGTGATTTTA+TGG + Chr4:2022355-2022374 MsG0480018235.01.T01:CDS 35.0%
! TGTCTTTAGATGTCATTTGC+TGG + Chr4:2021395-2021414 MsG0480018235.01.T01:intron 35.0%
! TTTTTCTGACCAGACCAAAA+TGG - Chr4:2021866-2021885 None:intergenic 35.0%
!! AAAGCCATTTTCCTACTAAG+AGG - Chr4:2021310-2021329 None:intergenic 35.0%
!! AAGCCATTTTCCTACTAAGA+GGG - Chr4:2021309-2021328 None:intergenic 35.0%
!! ACTCAATTTTAGGTATGCAC+CGG + Chr4:2021560-2021579 MsG0480018235.01.T01:intron 35.0%
!! ACTCTAGTTGGATTTTGGAA+TGG + Chr4:2023761-2023780 MsG0480018235.01.T01:CDS 35.0%
!! ACTTTTGAACCATTTTGGTC+TGG + Chr4:2021854-2021873 MsG0480018235.01.T01:intron 35.0%
!! CTTAGTTCTGAAGAGTTTAG+CGG + Chr4:2019201-2019220 MsG0480018235.01.T01:intron 35.0%
!! GAAAAGCATTAGAAAAGGAG+TGG + Chr4:2021682-2021701 MsG0480018235.01.T01:CDS 35.0%
!! GAAGCTTTGAGATTAGAAAG+AGG - Chr4:2018932-2018951 None:intergenic 35.0%
!! GTTCTTTATGTTGCTTTAGG+AGG + Chr4:2020855-2020874 MsG0480018235.01.T01:intron 35.0%
!!! ATATTTTAGGGCTTGTGTTG+TGG + Chr4:2022307-2022326 MsG0480018235.01.T01:intron 35.0%
!!! TCTCATTGCCGATTTTCTAT+GGG + Chr4:2018880-2018899 MsG0480018235.01.T01:CDS 35.0%
!!! TGTGAATGTGCCATTTCTTT+TGG - Chr4:2020509-2020528 None:intergenic 35.0%
!!! TTCTTGTATCTGGTTTTGGA+TGG + Chr4:2021516-2021535 MsG0480018235.01.T01:intron 35.0%
!!! TTTTTTAGTGTGTGGCTACA+TGG + Chr4:2021968-2021987 MsG0480018235.01.T01:intron 35.0%
!!! TTTTTTGGTGATGGATCATC+AGG - Chr4:2023824-2023843 None:intergenic 35.0%
AAAGAGAATCGACATACACC+TGG + Chr4:2021627-2021646 MsG0480018235.01.T01:CDS 40.0%
AAATTGCAGCAAAGGTGAAG+AGG + Chr4:2023941-2023960 MsG0480018235.01.T01:three_prime_UTR 40.0%
AAATTGGTTGTGATCTGCGT+CGG + Chr4:2018842-2018861 MsG0480018235.01.T01:CDS 40.0%
ACACATTAAGGGGTTAGAAG+TGG + Chr4:2019234-2019253 MsG0480018235.01.T01:intron 40.0%
ACATAAACTAATGCCCCGTT+TGG - Chr4:2019493-2019512 None:intergenic 40.0%
ACTAAGAGGGGTAGACTAAA+TGG - Chr4:2021296-2021315 None:intergenic 40.0%
ACTCACTTGAACCCTGAAAT+CGG + Chr4:2022920-2022939 MsG0480018235.01.T01:intron 40.0%
AGACTCCAATGTTCTAATCC+AGG - Chr4:2021648-2021667 None:intergenic 40.0%
AGAGGTCGATTGCATGTAAT+GGG + Chr4:2021597-2021616 MsG0480018235.01.T01:CDS 40.0%
ATAGGTTGTTCATCCAGTGT+CGG + Chr4:2023216-2023235 MsG0480018235.01.T01:intron 40.0%
ATCATCTGAGTTGTACGTAC+GGG + Chr4:2019624-2019643 MsG0480018235.01.T01:intron 40.0%
ATTGACACAGACACGAACAT+CGG - Chr4:2023191-2023210 None:intergenic 40.0%
ATTTCACACGGTGCAAATTG+CGG + Chr4:2023479-2023498 MsG0480018235.01.T01:intron 40.0%
CACATTAAGGGGTTAGAAGT+GGG + Chr4:2019235-2019254 MsG0480018235.01.T01:intron 40.0%
CATTCTTTCCAGTTTCAGTC+AGG + Chr4:2021203-2021222 MsG0480018235.01.T01:intron 40.0%
CCATACTGTCATTCAAGTGT+AGG - Chr4:2023342-2023361 None:intergenic 40.0%
CCATCACCAAAAAAGGTTGT+TGG + Chr4:2023830-2023849 MsG0480018235.01.T01:CDS 40.0%
CCTACACTTGAATGACAGTA+TGG + Chr4:2023339-2023358 MsG0480018235.01.T01:intron 40.0%
CGACATATCAAATGTCTCTG+CGG + Chr4:2019260-2019279 MsG0480018235.01.T01:intron 40.0%
CGCAGAGACATTTGATATGT+CGG - Chr4:2019262-2019281 None:intergenic 40.0%
CTGCGCGAGCATTTAAAAAT+AGG - Chr4:2022395-2022414 None:intergenic 40.0%
CTTCACCTTTGCTGCAATTT+CGG - Chr4:2023941-2023960 None:intergenic 40.0%
GAAAGAGGGAAATAGGAAGA+TGG - Chr4:2018917-2018936 None:intergenic 40.0%
GAACCGACACTTCTAATCTA+CGG + Chr4:2023063-2023082 MsG0480018235.01.T01:intron 40.0%
GACATCCACACAAACAGTTA+GGG + Chr4:2024134-2024153 MsG0480018235.01.T01:three_prime_UTR 40.0%
GATCGTCTTTATGTTCTTGG+TGG + Chr4:2022335-2022354 MsG0480018235.01.T01:CDS 40.0%
GATTGGAAAGTTACCATACC+GGG + Chr4:2023730-2023749 MsG0480018235.01.T01:CDS 40.0%
GCAGAGACATTTGATATGTC+GGG - Chr4:2019261-2019280 None:intergenic 40.0%
GGCACATTCACATTTAGGAA+TGG + Chr4:2020517-2020536 MsG0480018235.01.T01:CDS 40.0%
GGCGAAACTCAAACACATTA+AGG + Chr4:2019222-2019241 MsG0480018235.01.T01:intron 40.0%
GTGTAAGCACACCTCAAAAA+AGG - Chr4:2024090-2024109 None:intergenic 40.0%
TACCCCTCTTAGTAGGAAAA+TGG + Chr4:2021303-2021322 MsG0480018235.01.T01:intron 40.0%
TACTATCACAAACACTCGAC+AGG - Chr4:2019941-2019960 None:intergenic 40.0%
TAGTGAAACCTGACTGAAAC+TGG - Chr4:2021214-2021233 None:intergenic 40.0%
TATAAAGCAACGAACCTGTG+AGG - Chr4:2021738-2021757 None:intergenic 40.0%
TGACATCCACACAAACAGTT+AGG + Chr4:2024133-2024152 MsG0480018235.01.T01:three_prime_UTR 40.0%
TGTCATTCAAGTGTAGGACT+GGG - Chr4:2023336-2023355 None:intergenic 40.0%
TGTCTGTGTCAATGCTTCAT+AGG + Chr4:2023198-2023217 MsG0480018235.01.T01:intron 40.0%
TGTTTCCGTGTCAAGTACAA+AGG - Chr4:2020615-2020634 None:intergenic 40.0%
TTCAAATTGTCGCCTGATGT+AGG + Chr4:2020794-2020813 MsG0480018235.01.T01:intron 40.0%
TTCTTTCAAACGTGTCTGAG+TGG + Chr4:2020394-2020413 MsG0480018235.01.T01:intron 40.0%
TTGACACGGAAACAAAGCAA+TGG + Chr4:2020621-2020640 MsG0480018235.01.T01:CDS 40.0%
TTTAGTCTACCCCTCTTAGT+AGG + Chr4:2021296-2021315 MsG0480018235.01.T01:intron 40.0%
! AGCTATCCTGGAGTACTTAT+TGG + Chr4:2019859-2019878 MsG0480018235.01.T01:intron 40.0%
! CTCTTTAGGGACAATGATTG+TGG - Chr4:2018954-2018973 None:intergenic 40.0%
! CTTTAGGAGGTGGTAAATAC+TGG + Chr4:2020868-2020887 MsG0480018235.01.T01:intron 40.0%
! GGTTCAAAAGTACGAAGATG+TGG - Chr4:2021845-2021864 None:intergenic 40.0%
! TATGTTCTTGGTGGTCAAGA+AGG + Chr4:2022344-2022363 MsG0480018235.01.T01:CDS 40.0%
! TGTCATTTGCTGGGACATTA+TGG + Chr4:2021405-2021424 MsG0480018235.01.T01:intron 40.0%
!! AAGTACAAAGGTATCAGAGG+TGG - Chr4:2020603-2020622 None:intergenic 40.0%
!! AGCCATTTTCCTACTAAGAG+GGG - Chr4:2021308-2021327 None:intergenic 40.0%
!! AGTACAAAGGTATCAGAGGT+GGG - Chr4:2020602-2020621 None:intergenic 40.0%
!! CAACTAGAGTTGTTTTCACC+CGG - Chr4:2023751-2023770 None:intergenic 40.0%
!! CTTTATGTTGCTTTAGGAGG+TGG + Chr4:2020858-2020877 MsG0480018235.01.T01:intron 40.0%
!! GTCAAGTACAAAGGTATCAG+AGG - Chr4:2020606-2020625 None:intergenic 40.0%
!! TGACTTTTAGTGGACGTAGA+GGG + Chr4:2021237-2021256 MsG0480018235.01.T01:intron 40.0%
!! TTGACTTTTAGTGGACGTAG+AGG + Chr4:2021236-2021255 MsG0480018235.01.T01:intron 40.0%
!!! CCAACAACCTTTTTTGGTGA+TGG - Chr4:2023833-2023852 None:intergenic 40.0%
!!! CTATTTTTAAATGCTCGCGC+AGG + Chr4:2022393-2022412 MsG0480018235.01.T01:CDS 40.0%
!!! CTCTCATTGCCGATTTTCTA+TGG + Chr4:2018879-2018898 MsG0480018235.01.T01:CDS 40.0%
!!! GGTGTTTTTTGAAGCTATCC+TGG + Chr4:2019847-2019866 MsG0480018235.01.T01:intron 40.0%
!!! TAGTTGGATTTTGGAATGGC+TGG + Chr4:2023765-2023784 MsG0480018235.01.T01:CDS 40.0%
!!! TGTGAGTTTGGTTTTGGCAT+TGG - Chr4:2022610-2022629 None:intergenic 40.0%
AAAAATAGGTGACCCGGGTT+TGG - Chr4:2022381-2022400 None:intergenic 45.0%
AACGACGGTGGTGAATGATA+TGG + Chr4:2018790-2018809 MsG0480018235.01.T01:exon 45.0%
ACACATGTCAGTATCCGACA+TGG + Chr4:2023101-2023120 MsG0480018235.01.T01:intron 45.0%
ACGGAAACAAAGCAATGGAG+CGG + Chr4:2020626-2020645 MsG0480018235.01.T01:CDS 45.0%
ACTTCAGGACAGAGAGACAA+GGG + Chr4:2023797-2023816 MsG0480018235.01.T01:CDS 45.0%
AGAGTGAATTCTAACGACGG+TGG + Chr4:2018778-2018797 MsG0480018235.01.T01:five_prime_UTR 45.0%
AGCAGACTAGTGAGCAACAA+AGG - Chr4:2021480-2021499 None:intergenic 45.0%
ATAGCAGCACCATCAAGTCT+AGG - Chr4:2019079-2019098 None:intergenic 45.0%
ATCCACACAAACAGTTAGGG+TGG + Chr4:2024137-2024156 MsG0480018235.01.T01:three_prime_UTR 45.0%
CACCGTGTGAAATGGTGTAA+AGG - Chr4:2023472-2023491 None:intergenic 45.0%
CAGCATCGCAGAAGAAAGTT+AGG - Chr4:2022487-2022506 None:intergenic 45.0%
CATTTAGGAATGGCGACAGA+TGG + Chr4:2020527-2020546 MsG0480018235.01.T01:CDS 45.0%
CGGGTGAAAACAACTCTAGT+TGG + Chr4:2023749-2023768 MsG0480018235.01.T01:CDS 45.0%
CTCACTTGAACCCTGAAATC+GGG + Chr4:2022921-2022940 MsG0480018235.01.T01:intron 45.0%
CTGTCATTCAAGTGTAGGAC+TGG - Chr4:2023337-2023356 None:intergenic 45.0%
CTTCTTTCCCCAGTACTACA+TGG - Chr4:2022082-2022101 None:intergenic 45.0%
GAATGATATGGTTCGTGCGT+CGG + Chr4:2018802-2018821 MsG0480018235.01.T01:exon 45.0%
GACGCAGATCACAACCAATT+TGG - Chr4:2018843-2018862 None:intergenic 45.0%
GAGAGGTCGATTGCATGTAA+TGG + Chr4:2021596-2021615 MsG0480018235.01.T01:CDS 45.0%
GCAATCCGAAATTGCAGCAA+AGG + Chr4:2023933-2023952 MsG0480018235.01.T01:three_prime_UTR 45.0%
GCAATTTGCACCGTGTGAAA+TGG - Chr4:2023480-2023499 None:intergenic 45.0%
GCACCCTGAAACCAAGAAAA+TGG + Chr4:2022693-2022712 MsG0480018235.01.T01:CDS 45.0%
GCAGATCACAACCAATTTGG+CGG - Chr4:2018840-2018859 None:intergenic 45.0%
GTCTATTCGGTTCTCAGAGA+CGG - Chr4:2021168-2021187 None:intergenic 45.0%
GTTGTCCAATCCCGATTTCA+GGG - Chr4:2022934-2022953 None:intergenic 45.0%
TAGAACAGTTGGATGTGCAG+AGG + Chr4:2020971-2020990 MsG0480018235.01.T01:intron 45.0%
TCACCTGTTCCTAGACTTGA+TGG + Chr4:2019067-2019086 MsG0480018235.01.T01:CDS 45.0%
TGACTCTGTCACGTGGAAAA+AGG + Chr4:2021448-2021467 MsG0480018235.01.T01:intron 45.0%
TGTGCCTCCAGCAATAACAA+TGG - Chr4:2022665-2022684 None:intergenic 45.0%
TGTTGGATGACGAGATGAAG+TGG + Chr4:2022572-2022591 MsG0480018235.01.T01:CDS 45.0%
TGTTGTCCAATCCCGATTTC+AGG - Chr4:2022935-2022954 None:intergenic 45.0%
TTGAACCCTGAAATCGGGAT+TGG + Chr4:2022926-2022945 MsG0480018235.01.T01:intron 45.0%
TTGACACAGACACGAACATC+GGG - Chr4:2023190-2023209 None:intergenic 45.0%
! AAAAGTGGGTTCCGCCAAAT+TGG + Chr4:2018826-2018845 MsG0480018235.01.T01:CDS 45.0%
! ACCTGCTCCTCAACTTGTTT+GGG + Chr4:2019030-2019049 MsG0480018235.01.T01:CDS 45.0%
! ACGCCGTAGATTAGAAGTGT+CGG - Chr4:2023069-2023088 None:intergenic 45.0%
! ATGTAGTTGACTCTGTCACG+TGG + Chr4:2021441-2021460 MsG0480018235.01.T01:intron 45.0%
! CTAGTTCTCTTCCACAGCTA+TGG + Chr4:2022963-2022982 MsG0480018235.01.T01:intron 45.0%
! GGTGATTTTATGGCCAAACC+CGG + Chr4:2022365-2022384 MsG0480018235.01.T01:CDS 45.0%
! GTGATTTTATGGCCAAACCC+GGG + Chr4:2022366-2022385 MsG0480018235.01.T01:CDS 45.0%
! TACCTGCTCCTCAACTTGTT+TGG + Chr4:2019029-2019048 MsG0480018235.01.T01:CDS 45.0%
! TGGAGTCTTGCTGTCAAGAA+TGG + Chr4:2021660-2021679 MsG0480018235.01.T01:CDS 45.0%
! TTTTAAATGCTCGCGCAGGA+TGG + Chr4:2022397-2022416 MsG0480018235.01.T01:CDS 45.0%
!! AGAGTTGTTTTCACCCGGTA+TGG - Chr4:2023746-2023765 None:intergenic 45.0%
!! TTTGATGATGGAACTTGGGG+AGG + Chr4:2020470-2020489 MsG0480018235.01.T01:CDS 45.0%
!!! GAGTTTGGTTTTGGCATTGG+AGG - Chr4:2022607-2022626 None:intergenic 45.0%
!! TTAAAATAAATAAAAACAAA+GGG - Chr4:2023312-2023331 None:intergenic 5.0%
!!! ATATATAAAAAGTATAAATT+GGG - Chr4:2024224-2024243 None:intergenic 5.0%
!!! TTTAAAATAAATAAAAACAA+AGG - Chr4:2023313-2023332 None:intergenic 5.0%
AACATCGGGCACGTTGATAC+TGG - Chr4:2023176-2023195 None:intergenic 50.0%
AGGTGGGACCTCTACATTGT+GGG - Chr4:2020586-2020605 None:intergenic 50.0%
CACCACCCTAACTGTTTGTG+TGG - Chr4:2024142-2024161 None:intergenic 50.0%
CACTTCAGGACAGAGAGACA+AGG + Chr4:2023796-2023815 MsG0480018235.01.T01:CDS 50.0%
CAGTATGGCCCACAATGTAG+AGG + Chr4:2020575-2020594 MsG0480018235.01.T01:CDS 50.0%
GCACCATCAAGTCTAGGAAC+AGG - Chr4:2019073-2019092 None:intergenic 50.0%
GGGAGATCAAGATTCAGCAC+TGG - Chr4:2020938-2020957 None:intergenic 50.0%
TCGCAGAAGTGGTCTGTGAT+TGG + Chr4:2023713-2023732 MsG0480018235.01.T01:intron 50.0%
! ACATACCTAGGGACTGGCAA+AGG - Chr4:2020659-2020678 None:intergenic 50.0%
! ATGCACCGGCAACTCAACTT+TGG + Chr4:2021574-2021593 MsG0480018235.01.T01:CDS 50.0%
! CCTCTCCAAAGTTGAGTTGC+CGG - Chr4:2021582-2021601 None:intergenic 50.0%
! GGCTGGTTGTACTTCACTTC+AGG + Chr4:2023782-2023801 MsG0480018235.01.T01:CDS 50.0%
! GGTCGATTGCATGTAATGGG+TGG + Chr4:2021600-2021619 MsG0480018235.01.T01:CDS 50.0%
! GTTCGTGCGTCGGTAAAAGT+GGG + Chr4:2018812-2018831 MsG0480018235.01.T01:CDS 50.0%
! TCCCAAACAAGTTGAGGAGC+AGG - Chr4:2019034-2019053 None:intergenic 50.0%
!! GATGTGCAGAGGTGTCTGAA+AGG + Chr4:2020982-2021001 MsG0480018235.01.T01:intron 50.0%
!!! TCCAGTGTCGGTGATTTTCC+CGG + Chr4:2023228-2023247 MsG0480018235.01.T01:intron 50.0%
AGTGAGATACCCATTCCCCG+CGG + Chr4:2021708-2021727 MsG0480018235.01.T01:CDS 55.0%
AGTGGACGTAGAGGGAGACA+TGG + Chr4:2021245-2021264 MsG0480018235.01.T01:intron 55.0%
GAGGTGGGACCTCTACATTG+TGG - Chr4:2020587-2020606 None:intergenic 55.0%
GTGATCTGCGTCGGACTTCT+AGG + Chr4:2018851-2018870 MsG0480018235.01.T01:CDS 55.0%
TAAATGCTCGCGCAGGATGG+AGG + Chr4:2022400-2022419 MsG0480018235.01.T01:CDS 55.0%
TTCCTCCTTTGCCAGTCCCT+AGG + Chr4:2020651-2020670 MsG0480018235.01.T01:CDS 55.0%
! CCGGCAACTCAACTTTGGAG+AGG + Chr4:2021579-2021598 MsG0480018235.01.T01:CDS 55.0%
! GGTTCGTGCGTCGGTAAAAG+TGG + Chr4:2018811-2018830 MsG0480018235.01.T01:CDS 55.0%
! TACCTAGGGACTGGCAAAGG+AGG - Chr4:2020656-2020675 None:intergenic 55.0%
!! CACATGCATCGGTGCCATGT+CGG - Chr4:2023118-2023137 None:intergenic 55.0%
!!! CCAGTGTCGGTGATTTTCCC+GGG + Chr4:2023229-2023248 MsG0480018235.01.T01:intron 55.0%
CCCGGGAAAATCACCGACAC+TGG - Chr4:2023232-2023251 None:intergenic 60.0%
AACCTGTGAGGTCCTCCGCG+GGG - Chr4:2021726-2021745 None:intergenic 65.0%
CGAACCTGTGAGGTCCTCCG+CGG - Chr4:2021728-2021747 None:intergenic 65.0%
GAACCTGTGAGGTCCTCCGC+GGG - Chr4:2021727-2021746 None:intergenic 65.0%
GAGATACCCATTCCCCGCGG+AGG + Chr4:2021711-2021730 MsG0480018235.01.T01:CDS 65.0%
TGAGGTCCTCCGCGGGGAAT+GGG - Chr4:2021720-2021739 None:intergenic 65.0%
GTGAGGTCCTCCGCGGGGAA+TGG - Chr4:2021721-2021740 None:intergenic 70.0%
TTCCCCGCGGAGGACCTCAC+AGG + Chr4:2021721-2021740 MsG0480018235.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 2018773 2024259 2018773 ID=MsG0480018235.01;Name=MsG0480018235.01
Chr4 mRNA 2018773 2024259 2018773 ID=MsG0480018235.01.T01;Parent=MsG0480018235.01;Name=MsG0480018235.01.T01;_AED=0.42;_eAED=0.42;_QI=36|1|1|1|1|1|6|370|408
Chr4 exon 2018773 2019150 2018773 ID=MsG0480018235.01.T01:exon:644;Parent=MsG0480018235.01.T01
Chr4 exon 2020443 2020672 2020443 ID=MsG0480018235.01.T01:exon:645;Parent=MsG0480018235.01.T01
Chr4 exon 2021572 2021742 2021572 ID=MsG0480018235.01.T01:exon:646;Parent=MsG0480018235.01.T01
Chr4 exon 2022316 2022421 2022316 ID=MsG0480018235.01.T01:exon:647;Parent=MsG0480018235.01.T01
Chr4 exon 2022550 2022756 2022550 ID=MsG0480018235.01.T01:exon:648;Parent=MsG0480018235.01.T01
Chr4 exon 2023719 2024259 2023719 ID=MsG0480018235.01.T01:exon:649;Parent=MsG0480018235.01.T01
Chr4 five_prime_UTR 2018773 2018808 2018773 ID=MsG0480018235.01.T01:five_prime_utr;Parent=MsG0480018235.01.T01
Chr4 CDS 2018809 2019150 2018809 ID=MsG0480018235.01.T01:cds;Parent=MsG0480018235.01.T01
Chr4 CDS 2020443 2020672 2020443 ID=MsG0480018235.01.T01:cds;Parent=MsG0480018235.01.T01
Chr4 CDS 2021572 2021742 2021572 ID=MsG0480018235.01.T01:cds;Parent=MsG0480018235.01.T01
Chr4 CDS 2022316 2022421 2022316 ID=MsG0480018235.01.T01:cds;Parent=MsG0480018235.01.T01
Chr4 CDS 2022550 2022756 2022550 ID=MsG0480018235.01.T01:cds;Parent=MsG0480018235.01.T01
Chr4 CDS 2023719 2023889 2023719 ID=MsG0480018235.01.T01:cds;Parent=MsG0480018235.01.T01
Chr4 three_prime_UTR 2023890 2024259 2023890 ID=MsG0480018235.01.T01:three_prime_utr;Parent=MsG0480018235.01.T01
Gene Sequence

>MsG0480018235.01.T01

ATGGTTCGTGCGTCGGTAAAAGTGGGTTCCGCCAAATTGGTTGTGATCTGCGTCGGACTTCTAGGCTTCGCTCTCATTGCCGATTTTCTATGGGCTTCTTCATCTCCATCTTCCTATTTCCCTCTTTCTAATCTCAAAGCTTCCACAATCATTGTCCCTAAAGAGAAAGAACAAAAGAAGAAAAATTCTGTAAGATTGCTCGCAGATGCTTATGCAGATTTACCTGCTCCTCAACTTGTTTGGGAAAAGATGAAAACTTCACCTGTTCCTAGACTTGATGGTGCTGCTATTCAGATTCGTAATCTTTTCTTCGTTTTTGCTGGTTATGCCGACATTAATAATGTACATTCTCATGTTGATATATATAATTTTGATGATGGAACTTGGGGAGGACGTTTTGACATGCCAAAAGAAATGGCACATTCACATTTAGGAATGGCGACAGATGGAAGATACATTTATATAGTCAATGGGCAGTATGGCCCACAATGTAGAGGTCCCACCTCTGATACCTTTGTACTTGACACGGAAACAAAGCAATGGAGCGGTCTTCCTCCTTTGCCAGTCCCTAGGTATGCACCGGCAACTCAACTTTGGAGAGGTCGATTGCATGTAATGGGTGGCAGTAAAGAGAATCGACATACACCTGGATTAGAACATTGGAGTCTTGCTGTCAAGAATGGAAAAGCATTAGAAAAGGAGTGGAGAAGTGAGATACCCATTCCCCGCGGAGGACCTCACAGGGCTTGTGTTGTGGCCAATGATCGTCTTTATGTTCTTGGTGGTCAAGAAGGTGATTTTATGGCCAAACCCGGGTCACCTATTTTTAAATGCTCGCGCAGGATGGAGGTGGTCTATCCTGATGTTTACATGTTGGATGACGAGATGAAGTGGAAAGTGCTACCTCCAATGCCAAAACCAAACTCACATATTGAATTTGCATGGGTGCTTGTAAACAATTCCATTGTTATTGCTGGAGGCACAACAGAGAAGCACCCTGAAACCAAGAAAATGGTTTTAAATGGAGAAGTGTTCCAGTTTAACTTGAATACTTTGAAGTGGTCTGTGATTGGAAAGTTACCATACCGGGTGAAAACAACTCTAGTTGGATTTTGGAATGGCTGGTTGTACTTCACTTCAGGACAGAGAGACAAGGGACCTGATGATCCATCACCAAAAAAGGTTGTTGGAGATATGTGGAGAACAAAATTAAAGTTGAATGAGTGA

Protein sequence

>MsG0480018235.01.T01

MVRASVKVGSAKLVVICVGLLGFALIADFLWASSSPSSYFPLSNLKASTIIVPKEKEQKKKNSVRLLADAYADLPAPQLVWEKMKTSPVPRLDGAAIQIRNLFFVFAGYADINNVHSHVDIYNFDDGTWGGRFDMPKEMAHSHLGMATDGRYIYIVNGQYGPQCRGPTSDTFVLDTETKQWSGLPPLPVPRYAPATQLWRGRLHVMGGSKENRHTPGLEHWSLAVKNGKALEKEWRSEIPIPRGGPHRACVVANDRLYVLGGQEGDFMAKPGSPIFKCSRRMEVVYPDVYMLDDEMKWKVLPPMPKPNSHIEFAWVLVNNSIVIAGGTTEKHPETKKMVLNGEVFQFNLNTLKWSVIGKLPYRVKTTLVGFWNGWLYFTSGQRDKGPDDPSPKKVVGDMWRTKLKLNE*