AlfalfaGEDB | MsG0580029647.01

M. sativa cultivar ZhongmuNo.1 / MsG0580029647.01

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029647.01.T01	XP_003617309.2	96.694	363	11	1	6	367	2	364	0	697

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029647.01.T01	G7KCZ3	96.694	363	11	1	6	367	2	364	0.0	697

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047958.01	MsG0580029647.01	0.804685	1.918479e-49	9.955050e-47
MsG0080048058.01	MsG0580029647.01	0.817841	2.675281e-52	1.969942e-49
MsG0080048383.01	MsG0580029647.01	0.809941	1.475388e-50	8.778413e-48
MsG0080048461.01	MsG0580029647.01	0.812282	4.586594e-51	2.904109e-48
MsG0080048672.01	MsG0580029647.01	0.810754	9.850583e-51	5.988278e-48
MsG0080048769.01	MsG0580029647.01	0.810670	1.026951e-50	6.229011e-48
MsG0080048787.01	MsG0580029647.01	0.839432	1.590670e-57	2.196345e-54
MsG0080048815.01	MsG0580029647.01	0.807373	5.216882e-50	2.900784e-47
MsG0180000001.01	MsG0580029647.01	0.802915	4.473480e-49	2.218127e-46
MsG0180000091.01	MsG0580029647.01	0.827430	1.570938e-54	1.516316e-51

Showing 1 to 10 of 572 entries

Previous1 2 3 4 5…58Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029647.01.T01	MTR_5g090200	96.694	363	11	1	6	367	2	364	0.0	697
MsG0580029647.01.T01	MTR_5g090215	61.232	276	18	2	107	341	16	243	3.10e-98	292
MsG0580029647.01.T01	MTR_7g451470	80.214	187	37	0	181	367	820	1006	6.27e-92	297
MsG0580029647.01.T01	MTR_2g031380	40.360	389	179	12	20	367	14	390	2.38e-50	181
MsG0580029647.01.T01	MTR_2g031380	40.360	389	179	12	20	367	14	390	2.48e-50	181
MsG0580029647.01.T01	MTR_2g031380	40.360	389	179	12	20	367	14	390	2.52e-50	181
MsG0580029647.01.T01	MTR_2g031380	40.360	389	179	12	20	367	14	390	3.11e-50	181

Showing 1 to 7 of 7 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 71 sgRNAs with CRISPR-Local

Find 96 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTAACGAAAAGTTGA+AGG	0.536384	5:+100236349	MsG0580029647.01.T01:CDS
AAAGAAGGGCTGATTCTAAG+AGG	0.549300	5:+100236081	MsG0580029647.01.T01:CDS
AAAGCACAAAGCCATTGAGA+TGG	0.613517	5:+100236379	MsG0580029647.01.T01:CDS
AAATTCTTCCAATCGCTCCC+CGG	0.555741	5:-100235877	None:intergenic
AACAACCACAATAACAACAA+AGG	0.631659	5:+100235290	MsG0580029647.01.T01:CDS
AAGAAAAGCCGAGTTAGAAA+TGG	0.483870	5:+100236325	MsG0580029647.01.T01:CDS
AATCGAAACCGGGGAGCGAT+TGG	0.423986	5:+100235869	MsG0580029647.01.T01:CDS
AATCTCGTCGAGCATGGCAG+TGG	0.552054	5:+100235019	None:intergenic
ACAAGCTTGTATAGCTGAGA+GGG	0.568745	5:+100236016	MsG0580029647.01.T01:CDS
ACCTACCTTTGTTGTTATTG+TGG	0.461688	5:-100235295	None:intergenic

Showing 1 to 10 of 71 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGCTAACGAAAAGTTGA+AGG	+	Chr5:100236349-100236368	MsG0580029647.01.T01:CDS	30.0%
AACAACCACAATAACAACAA+AGG	+	Chr5:100235290-100235309	MsG0580029647.01.T01:CDS	30.0%
ACGGTTTATGTCAAAAACAT+AGG	-	Chr5:100235602-100235621	None:intergenic	30.0%
ACTGGAACAAGAAAAGAATA+AGG	+	Chr5:100236130-100236149	MsG0580029647.01.T01:CDS	30.0%
ATTGGAAGAATTTAATGCTG+GGG	+	Chr5:100235887-100235906	MsG0580029647.01.T01:CDS	30.0%
CAATGAAATGCATTGTAATG+CGG	+	Chr5:100235809-100235828	MsG0580029647.01.T01:intron	30.0%
CATTGAGATGGTTAAATTAG+AGG	+	Chr5:100236391-100236410	MsG0580029647.01.T01:CDS	30.0%
CTCTAATTTAACCATCTCAA+TGG	-	Chr5:100236393-100236412	None:intergenic	30.0%
CTGGAACAAGAAAAGAATAA+GGG	+	Chr5:100236131-100236150	MsG0580029647.01.T01:CDS	30.0%
GATTGGAAGAATTTAATGCT+GGG	+	Chr5:100235886-100235905	MsG0580029647.01.T01:CDS	30.0%

Showing 1 to 10 of 96 entries

Previous1 2 3 4 5…10Next

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	100235032	100236766	100235032	ID=MsG0580029647.01;Name=MsG0580029647.01
Chr5	mRNA	100235032	100236766	100235032	ID=MsG0580029647.01.T01;Parent=MsG0580029647.01;Name=MsG0580029647.01.T01;_AED=0.47;_eAED=0.47;_QI=0\|0\|0\|1\|1\|1\|3\|0\|367
Chr5	exon	100235032	100235106	100235032	ID=MsG0580029647.01.T01:exon:26331;Parent=MsG0580029647.01.T01
Chr5	exon	100235194	100235311	100235194	ID=MsG0580029647.01.T01:exon:26332;Parent=MsG0580029647.01.T01
Chr5	exon	100235856	100236766	100235856	ID=MsG0580029647.01.T01:exon:26333;Parent=MsG0580029647.01.T01
Chr5	CDS	100235032	100235106	100235032	ID=MsG0580029647.01.T01:cds;Parent=MsG0580029647.01.T01
Chr5	CDS	100235194	100235311	100235194	ID=MsG0580029647.01.T01:cds;Parent=MsG0580029647.01.T01
Chr5	CDS	100235856	100236766	100235856	ID=MsG0580029647.01.T01:cds;Parent=MsG0580029647.01.T01

Gene Sequence

>MsG0580029647.01.T01

ATGGCAGTGGCAGCGGCAGCGGCAGCGGCGGAGACACTGAAATCTGATTCCATTATTAACACTTGCTGCGAACAGTGGAGAAGCAAATACTTGAAAGCTCAAGAATCTCGTAATGCTCTTCGTCAAGCTGTTAAGTTTCTTGAACTCAAAATCAATGAAATTCAATCCCTCAACAACCACAATAACAACAAAGTATGTGATGTGAAAATCGAAACCGGGGAGCGATTGGAAGAATTTAATGCTGGGGAACCAGCAGTGAATAATGGACTCAGTAGCTTCAAGTCTCAGACTGTTACTTCTGCTCATCGGGGATGTAACGGGGATGGGGACGAGAATGAGAAGGTATTAGGTTTACAAGCTTGTATAGCTGAGAGGGACAGGGAAATATGTAGATTGAAGGAGCTTTTGGAGAGTGAAAAAAGAAGGGCTGATTCTAAGAGGAAGAGAGTTGCCGAAACTTGGAAGTTACTGGAACAAGAAAAGAATAAGGGAGCGCAAATTGCAAAACTTAAAGTGGAGAAGGCTGAGGGGTATAGGGTTCAGATTGGTCAATTGGAGAAACAAGTTAGTGAAGCAAAACAGAAATTGAAATCTGAGACATCTGTGTTTAAAGCGGCGGCCAGAAGGCAGGATTTTAAAAAGCGCAGGTTATTTGCAGAGAAAAGAAAAGCCGAGTTAGAAATGGCAAAAGCTAACGAAAAGTTGAAGGAGATTGAAAAGCACAAAGCCATTGAGATGGTTAAATTAGAGGAGCAGAAGGCACTTGCACAAGATAACTGGAACAAGTTTGTGGAAGTGAAATGTCGTGCGGATCAGATGTCTCAGCAGCTAGCAGAAGATAAGAGTACAATTGAGGATTTGAAGCGGAAGATGCTTGAGCTCTCATCCCTGAGAAATCAAACTGAAATAGCCGTTGACATCAGTGCGAAAACTCAAAGTAGTCAATGTTCTAAAGTGAAACATTTGAAAAACAATCTGAACGTTGAAAAGTTACAAACAAAGCATACCAAGCTAAAATACAAGTTAGAAGCAAGTCGTTACAGTATTTTACATCACAGATTAGGTTGTCTAAAGATTGGTTTTGTTCAGCTTCTACGTCACTGA

Protein sequence

>MsG0580029647.01.T01

MAVAAAAAAAETLKSDSIINTCCEQWRSKYLKAQESRNALRQAVKFLELKINEIQSLNNHNNNKVCDVKIETGERLEEFNAGEPAVNNGLSSFKSQTVTSAHRGCNGDGDENEKVLGLQACIAERDREICRLKELLESEKRRADSKRKRVAETWKLLEQEKNKGAQIAKLKVEKAEGYRVQIGQLEKQVSEAKQKLKSETSVFKAAARRQDFKKRRLFAEKRKAELEMAKANEKLKEIEKHKAIEMVKLEEQKALAQDNWNKFVEVKCRADQMSQQLAEDKSTIEDLKRKMLELSSLRNQTEIAVDISAKTQSSQCSKVKHLKNNLNVEKLQTKHTKLKYKLEASRYSILHHRLGCLKIGFVQLLRH*