AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480019409.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019409.01.T01 MTR_4g031220 72.650 234 14 2 1 234 1 184 2.16e-105 313
MsG0480019409.01.T01 MTR_4g031220 72.000 225 13 2 1 225 1 175 3.25e-100 298
MsG0480019409.01.T01 MTR_4g031220 73.214 224 10 2 1 224 1 174 1.52e-99 298
MsG0480019409.01.T01 MTR_4g031220 100.000 61 0 0 291 351 171 231 2.17e-35 132
MsG0480019409.01.T01 MTR_4g031220 70.792 202 9 2 24 225 2 153 2.85e-85 259
MsG0480019409.01.T01 MTR_4g031235 87.611 113 5 1 352 464 56 159 8.71e-58 188
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019409.01.T01 AT1G50510 64.407 177 54 1 290 466 162 329 4.76e-73 234
MsG0480019409.01.T01 AT1G50510 47.253 273 74 6 2 267 3 212 7.05e-58 194

Find 99 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATGTTCTGGTCCAAATTT+TGG 0.112986 4:-19777856 MsG0480019409.01.T01:CDS
ATTCATTTGGTTCCAAAATT+TGG 0.132248 4:+19777844 None:intergenic
GTGAAGAATAATGCCCTTAT+TGG 0.153218 4:-19775442 MsG0480019409.01.T01:CDS
GTCTTTGTGACTGGTGGGAT+TGG 0.249410 4:-19777981 MsG0480019409.01.T01:CDS
TCTTTGTGACTGGTGGGATT+GGG 0.252619 4:-19777980 MsG0480019409.01.T01:CDS
GAAGAGTGTGCTTCCTTAAT+AGG 0.266235 4:-19776128 MsG0480019409.01.T01:CDS
ATAAAGTATGATTTCGATAC+TGG 0.271235 4:-19779295 MsG0480019409.01.T01:intron
TCCTAGGACCCTTGAATATC+TGG 0.282778 4:-19777247 MsG0480019409.01.T01:intron
TGACATCTTCAGCAGCTTTA+CGG 0.284366 4:-19780018 MsG0480019409.01.T01:CDS
ATTAAGGAAGCACACTCTTC+AGG 0.285757 4:+19776131 None:intergenic
CAGCAACTTTAGCTCCAATA+AGG 0.297412 4:+19775428 None:intergenic
GCATATGTTGTGAGTGCTTT+TGG 0.306875 4:-19778965 MsG0480019409.01.T01:CDS
CCTCAAGAACAGTCGGCTTC+TGG 0.307982 4:-19775938 MsG0480019409.01.T01:CDS
GCCACTTGATGCTGTGAAAA+AGG 0.319652 4:+19777086 None:intergenic
TATGCAAAGGTTGATTCATT+TGG 0.321568 4:+19777831 None:intergenic
ACTTGAAAGGTTAGCTACTT+TGG 0.339699 4:-19779023 MsG0480019409.01.T01:CDS
TCTAAAATTGCAATAGTTGC+AGG 0.353501 4:+19779498 None:intergenic
CTTGAAAGGTTAGCTACTTT+GGG 0.365927 4:-19779022 MsG0480019409.01.T01:CDS
TGTAGGGAAAAGAATATATC+AGG 0.370408 4:-19775716 MsG0480019409.01.T01:intron
TTCTTCAAGGGCTTTATTGA+TGG 0.374459 4:+19775898 None:intergenic
GCATACATAAATATGATCTA+TGG 0.381007 4:+19778937 None:intergenic
TAGTAAGATAAAACATGTTC+TGG 0.384499 4:-19777868 MsG0480019409.01.T01:CDS
CCTAACTGTCTAGCTATTTG+TGG 0.384937 4:-19779346 MsG0480019409.01.T01:CDS
AATGTTTCCCTTGCCTATTA+AGG 0.388116 4:+19776115 None:intergenic
AAGTTCACCTTGCTTCTTCA+AGG 0.391127 4:+19775885 None:intergenic
TGCTGGTGTAAAGTCAATAT+TGG 0.394779 4:-19777274 MsG0480019409.01.T01:CDS
AGCAACTTTAGCTCCAATAA+GGG 0.404028 4:+19775429 None:intergenic
CTTTGTGACTGGTGGGATTG+GGG 0.415078 4:-19777979 MsG0480019409.01.T01:CDS
TTAAGGAAGCACACTCTTCA+GGG 0.424538 4:+19776132 None:intergenic
GGTATTCATGTCTTTGTGAC+TGG 0.439350 4:-19777990 MsG0480019409.01.T01:CDS
GCCGACTGTTCTTGAGGAAT+AGG 0.445716 4:+19775944 None:intergenic
AGGTATTTATTGTCTACCTT+CGG 0.446173 4:-19779460 MsG0480019409.01.T01:intron
AAATTTGCAAACTGCGAAAG+AGG 0.448124 4:-19779553 MsG0480019409.01.T01:CDS
TAATTTCCAGGTTCCATGTC+GGG 0.450450 4:-19776162 MsG0480019409.01.T01:intron
TGGGCGTGCAGTTGTTGCTC+TGG 0.465235 4:-19779698 MsG0480019409.01.T01:CDS
AAACAATCTTCGACGACACT+TGG 0.469924 4:-19779993 MsG0480019409.01.T01:CDS
TAGGTGGCTAGAGGTGGAAA+TGG 0.477741 4:-19778169 MsG0480019409.01.T01:CDS
GTTTCTGAAGCGTTATCACT+TGG 0.477839 4:-19779718 MsG0480019409.01.T01:CDS
CCACAAATAGCTAGACAGTT+AGG 0.480466 4:+19779346 None:intergenic
AGTCAATATTGGATATTCCT+AGG 0.489632 4:-19777263 MsG0480019409.01.T01:CDS
TCTTCAGATATCACCGAGCT+TGG 0.494007 4:-19777321 MsG0480019409.01.T01:CDS
TATAATACCATGTGAAATGA+TGG 0.496387 4:+19779669 None:intergenic
ATCAAACTCAAGGTCGGAAG+TGG 0.496465 4:-19775983 MsG0480019409.01.T01:CDS
TACTGGTGTTCTTCCAAGCT+CGG 0.500557 4:+19777308 None:intergenic
TTCATGTCTTTGTGACTGGT+GGG 0.503380 4:-19777986 MsG0480019409.01.T01:CDS
CCAGCACATATAACTGCTAC+TGG 0.504204 4:+19777291 None:intergenic
TTTACTCTATCAAGCAAGAA+AGG 0.504931 4:+19775680 None:intergenic
CTTGCTCTGCTAAGAGAAAA+CGG 0.507945 4:-19775400 MsG0480019409.01.T01:CDS
TACAGATACGGACTGTGCTG+TGG 0.508881 4:+19780717 None:intergenic
TGAAGCAAGTGAGGCACCTC+CGG 0.513459 4:+19775649 None:intergenic
ATTCATGTCTTTGTGACTGG+TGG 0.513659 4:-19777987 MsG0480019409.01.T01:CDS
TTTATTTGAATAGGTCTAAG+TGG 0.515713 4:-19779052 MsG0480019409.01.T01:intron
TTATTTGAATAGGTCTAAGT+GGG 0.516237 4:-19779051 MsG0480019409.01.T01:intron
ACCAGATATTCAAGGGTCCT+AGG 0.516969 4:+19777246 None:intergenic
GAAGACAAGGCTTACAGATA+CGG 0.518382 4:+19780705 None:intergenic
AGTTCACCTTGCTTCTTCAA+GGG 0.521769 4:+19775886 None:intergenic
TTTGTGACTGGTGGGATTGG+GGG 0.525553 4:-19777978 MsG0480019409.01.T01:CDS
CAAACTGCGAAAGAGGTTGA+AGG 0.526352 4:-19779546 MsG0480019409.01.T01:CDS
GTCGGAAGTGGAATCTTGAT+AGG 0.531650 4:-19775971 MsG0480019409.01.T01:CDS
CCTACCGGAGTTAATGCTGC+TGG 0.531900 4:-19779775 MsG0480019409.01.T01:CDS
CAATGTGAAGGTAGCTTCAG+AGG 0.537312 4:-19779740 MsG0480019409.01.T01:CDS
CCAGTAGCAGTTATATGTGC+TGG 0.538807 4:-19777291 MsG0480019409.01.T01:CDS
TCCTATTCCTCAAGAACAGT+CGG 0.538907 4:-19775945 MsG0480019409.01.T01:CDS
TGCTGTGGGTTGGCTGCGGT+CGG 0.539175 4:+19780732 None:intergenic
TGTGGGTTGGCTGCGGTCGG+CGG 0.541312 4:+19780735 None:intergenic
CACAGCATCAAGTGGCTGCA+AGG 0.547952 4:-19777079 MsG0480019409.01.T01:intron
TTTCTGAAGCGTTATCACTT+GGG 0.556780 4:-19779717 MsG0480019409.01.T01:CDS
AGCTCAGAAAACAGCTCGAA+GGG 0.563723 4:-19778993 MsG0480019409.01.T01:CDS
GTGTGCTTCCTTAATAGGCA+AGG 0.570604 4:-19776123 MsG0480019409.01.T01:CDS
CCAGAAGCCGACTGTTCTTG+AGG 0.575935 4:+19775938 None:intergenic
ACTGTGCTGTGGGTTGGCTG+CGG 0.590011 4:+19780728 None:intergenic
GAAGGTATTGTGAGAAAGAA+CGG 0.591017 4:-19779528 MsG0480019409.01.T01:CDS
TGCTAAGAGAAAACGGACAA+AGG 0.592059 4:-19775393 MsG0480019409.01.T01:CDS
GGGTTTGATATGCAGCCTAC+CGG 0.593144 4:-19779790 MsG0480019409.01.T01:intron
ATACGGACTGTGCTGTGGGT+TGG 0.596429 4:+19780722 None:intergenic
TTAATTTCCAGGTTCCATGT+CGG 0.597267 4:-19776163 MsG0480019409.01.T01:intron
ATTAGAAGTAAAATATGCAA+AGG 0.598761 4:+19777818 None:intergenic
ATAGCTAGACAGTTAGGCGC+AGG 0.601026 4:+19779352 None:intergenic
AGACAATAAATACCTACGAT+AGG 0.609485 4:+19779468 None:intergenic
GAGCTCAGAAAACAGCTCGA+AGG 0.611591 4:-19778994 MsG0480019409.01.T01:CDS
TTAGATGGCGTGCCTATCGT+AGG 0.613078 4:-19779480 MsG0480019409.01.T01:CDS
ATAAAGCCCTTGAAGAAGCA+AGG 0.614816 4:-19775892 MsG0480019409.01.T01:intron
AGAAGCAAACATCAAACTCA+AGG 0.615668 4:-19775993 MsG0480019409.01.T01:intron
TGTGCTTCCTTAATAGGCAA+GGG 0.619589 4:-19776122 MsG0480019409.01.T01:CDS
ACAGATACGGACTGTGCTGT+GGG 0.625970 4:+19780718 None:intergenic
TAAGTGGGGAAGAACTTGAA+AGG 0.626267 4:-19779036 MsG0480019409.01.T01:CDS
AGCTTCGTCAATCAATGTGA+AGG 0.626786 4:-19779752 MsG0480019409.01.T01:CDS
GCAAACATCAAACTCAAGGT+CGG 0.627317 4:-19775989 MsG0480019409.01.T01:CDS
GAGGATACTTGAAGCAAGTG+AGG 0.630119 4:+19775640 None:intergenic
AGCTCCAGCAGCATTAACTC+CGG 0.631641 4:+19779771 None:intergenic
GATAGAGTAAATGCACTCAC+CGG 0.642406 4:-19775668 MsG0480019409.01.T01:CDS
TATCTTGAATAGGAAACACA+AGG 0.650157 4:-19777147 MsG0480019409.01.T01:intron
TAAGGAAGCACACTCTTCAG+GGG 0.659437 4:+19776133 None:intergenic
TCAGGGGTATCTACCCGACA+TGG 0.659564 4:+19776149 None:intergenic
GAATCTACCATCATTTCACA+TGG 0.666324 4:-19779676 MsG0480019409.01.T01:intron
CCAGCAGCATTAACTCCGGT+AGG 0.672606 4:+19779775 None:intergenic
AGAGTAAATGCACTCACCGG+AGG 0.692180 4:-19775665 MsG0480019409.01.T01:CDS
TTCGTCTGACATAGTCAACA+AGG 0.692327 4:-19779969 MsG0480019409.01.T01:intron
TATTTGAATAGGTCTAAGTG+GGG 0.693838 4:-19779050 MsG0480019409.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTAATAATAATTTAAGAAAA+TGG - Chr4:19775649-19775668 MsG0480019409.01.T01:CDS 10.0%
!!! TTTTCTTAAATTATTATTAC+CGG + Chr4:19775649-19775668 None:intergenic 10.0%
!!! AAAATTTTGAAGTTTATAGA+CGG + Chr4:19778203-19778222 None:intergenic 15.0%
!!! ATATTGTTTTGAATTTTCTT+TGG - Chr4:19778863-19778882 MsG0480019409.01.T01:intron 15.0%
!!! TAGAAAAAATTTGTTTTTCT+GGG - Chr4:19779699-19779718 MsG0480019409.01.T01:CDS 15.0%
!!! TAGTAGTATAAATTTTTCTT+AGG - Chr4:19775428-19775447 MsG0480019409.01.T01:CDS 15.0%
!!! TATTGTTTTGAATTTTCTTT+GGG - Chr4:19778864-19778883 MsG0480019409.01.T01:intron 15.0%
!!! TTTTACTTCTAATTTTTTCT+TGG - Chr4:19778414-19778433 MsG0480019409.01.T01:intron 15.0%
!! AAAAAATAGAAAGAAAGTGA+GGG + Chr4:19780369-19780388 None:intergenic 20.0%
!! AACTCATTATATAATCAACA+GGG + Chr4:19779748-19779767 None:intergenic 20.0%
!! AATACGATATAGAATATCAT+AGG + Chr4:19775899-19775918 None:intergenic 20.0%
!! AATTGTAAGATAAACAAGAA+AGG - Chr4:19778446-19778465 MsG0480019409.01.T01:intron 20.0%
!! ACTAGGTAAAATATTCAATT+TGG + Chr4:19780722-19780741 None:intergenic 20.0%
!! ATAACCATATCAACTATATT+GGG + Chr4:19779423-19779442 None:intergenic 20.0%
!! ATAATAGTTGAAATTTCAAG+GGG - Chr4:19775782-19775801 MsG0480019409.01.T01:intron 20.0%
!! ATTAGAAGTAAAATATGCAA+AGG + Chr4:19778407-19778426 None:intergenic 20.0%
!! ATTGTAAGATAAACAAGAAA+GGG - Chr4:19778447-19778466 MsG0480019409.01.T01:intron 20.0%
!! CAGATAACATTAAGAAATTA+TGG + Chr4:19778141-19778160 None:intergenic 20.0%
!! GATAATAGTTGAAATTTCAA+GGG - Chr4:19775781-19775800 MsG0480019409.01.T01:intron 20.0%
!! TAAAAAATAGAAAGAAAGTG+AGG + Chr4:19780370-19780389 None:intergenic 20.0%
!! TAAAATATTCAATTTGGATG+TGG + Chr4:19780716-19780735 None:intergenic 20.0%
!! TAACTCATTATATAATCAAC+AGG + Chr4:19779749-19779768 None:intergenic 20.0%
!! TATAACCATATCAACTATAT+TGG + Chr4:19779424-19779443 None:intergenic 20.0%
!! TATTATTTATAAGCTCGTAA+AGG - Chr4:19776021-19776040 MsG0480019409.01.T01:intron 20.0%
!! TGTCTTAATGATAGAAAAAA+TGG - Chr4:19778306-19778325 MsG0480019409.01.T01:intron 20.0%
!! TTATATTACAGTTAACTGAA+AGG + Chr4:19777968-19777987 None:intergenic 20.0%
!! TTGTGCTTAAAATTGATTAA+TGG + Chr4:19776820-19776839 None:intergenic 20.0%
!!! AATATAGTTGATATGGTTAT+AGG - Chr4:19779423-19779442 MsG0480019409.01.T01:intron 20.0%
!!! AATCTATCTATTTTGCTTTT+AGG - Chr4:19778034-19778053 MsG0480019409.01.T01:intron 20.0%
!!! AATTTTATACCAGATATTCA+AGG + Chr4:19778987-19779006 None:intergenic 20.0%
!!! ACTATTACTTGTTTTTGAAA+GGG + Chr4:19775412-19775431 None:intergenic 20.0%
!!! ATTTTATACCAGATATTCAA+GGG + Chr4:19778986-19779005 None:intergenic 20.0%
!!! GAAATGCATTTTTTACATAA+CGG + Chr4:19779812-19779831 None:intergenic 20.0%
!!! GTAGAAAAAATTTGTTTTTC+TGG - Chr4:19779698-19779717 MsG0480019409.01.T01:CDS 20.0%
!!! TACTATTACTTGTTTTTGAA+AGG + Chr4:19775413-19775432 None:intergenic 20.0%
!!! TAGTAATTTTTTATCGTAGT+TGG - Chr4:19779512-19779531 MsG0480019409.01.T01:CDS 20.0%
!!! TCATTGTTTTTATCTTGAAT+AGG - Chr4:19779065-19779084 MsG0480019409.01.T01:intron 20.0%
!!! TTCCATTTTATTTAGATGAA+GGG + Chr4:19779320-19779339 None:intergenic 20.0%
!!! TTCTTTTTTTTTACTCACAT+AGG + Chr4:19780171-19780190 None:intergenic 20.0%
!!! TTTTTCTATCATTAAGACAT+AGG + Chr4:19778305-19778324 None:intergenic 20.0%
! AAAATAAGTCACAATCCAAA+CGG + Chr4:19775958-19775977 None:intergenic 25.0%
! AAAATTAGAACGAATCACAT+AGG + Chr4:19780197-19780216 None:intergenic 25.0%
! AACAAACATTTGCAATCATT+GGG + Chr4:19777096-19777115 None:intergenic 25.0%
! AATTTATACACAATGTAACG+CGG - Chr4:19776411-19776430 MsG0480019409.01.T01:intron 25.0%
! ACTCATTATATAATCAACAG+GGG + Chr4:19779747-19779766 None:intergenic 25.0%
! AGAACAATACAAAAAGTCAT+AGG + Chr4:19776587-19776606 None:intergenic 25.0%
! ATAAAGTATGATTTCGATAC+TGG - Chr4:19776927-19776946 MsG0480019409.01.T01:intron 25.0%
! ATAATCCAAAAACTAAGATG+CGG + Chr4:19776619-19776638 None:intergenic 25.0%
! CAAAGTTATAAAAGGAACTA+TGG - Chr4:19778647-19778666 MsG0480019409.01.T01:intron 25.0%
! CAATACATTGTTTCATTTCA+CGG + Chr4:19775746-19775765 None:intergenic 25.0%
! CAATTAGAAAGAATGTACTT+GGG - Chr4:19777400-19777419 MsG0480019409.01.T01:intron 25.0%
! GCATACATAAATATGATCTA+TGG + Chr4:19777288-19777307 None:intergenic 25.0%
! GGATAATAGTTGAAATTTCA+AGG - Chr4:19775780-19775799 MsG0480019409.01.T01:intron 25.0%
! TAAATCCTTGAATATTAAGC+AGG - Chr4:19776175-19776194 MsG0480019409.01.T01:intron 25.0%
! TACAGTACGTTAAAAAAAGA+TGG - Chr4:19777451-19777470 MsG0480019409.01.T01:intron 25.0%
! TAGTAAGATAAAACATGTTC+TGG - Chr4:19778354-19778373 MsG0480019409.01.T01:intron 25.0%
! TATAATACCATGTGAAATGA+TGG + Chr4:19776556-19776575 None:intergenic 25.0%
! TCAATTAGAAAGAATGTACT+TGG - Chr4:19777399-19777418 MsG0480019409.01.T01:intron 25.0%
! TGAATGTAAAAACTTTCGAA+AGG + Chr4:19776358-19776377 None:intergenic 25.0%
! TTAAATTATTATTACCGGTG+TGG + Chr4:19775644-19775663 None:intergenic 25.0%
! TTAAGATATGCTTCAAAACT+AGG + Chr4:19780739-19780758 None:intergenic 25.0%
! TTATTTGAATAGGTCTAAGT+GGG - Chr4:19777171-19777190 MsG0480019409.01.T01:intron 25.0%
! TTCCCTTCATCTAAATAAAA+TGG - Chr4:19779315-19779334 MsG0480019409.01.T01:CDS 25.0%
! TTGTTGAAAAACTTCAAAAG+AGG + Chr4:19780604-19780623 None:intergenic 25.0%
! TTTATTTGAATAGGTCTAAG+TGG - Chr4:19777170-19777189 MsG0480019409.01.T01:intron 25.0%
!! AGATATTTTCTGTTAAATCG+AGG - Chr4:19778623-19778642 MsG0480019409.01.T01:intron 25.0%
!! ATAGAATCAAAAGTTTGTTC+TGG - Chr4:19777565-19777584 MsG0480019409.01.T01:intron 25.0%
!! ATGGTTTTCATAATGAATAG+TGG - Chr4:19778325-19778344 MsG0480019409.01.T01:intron 25.0%
!! ATTCATTTGGTTCCAAAATT+TGG + Chr4:19778381-19778400 None:intergenic 25.0%
!! CGTTCTAATTTTTATTCTTC+TGG - Chr4:19780205-19780224 MsG0480019409.01.T01:intron 25.0%
!! GAAACAATGTATTGGTATTT+AGG - Chr4:19775752-19775771 MsG0480019409.01.T01:intron 25.0%
!! GTTACTTTATGTATAAAGCA+AGG + Chr4:19779204-19779223 None:intergenic 25.0%
!! TAAACTTCAAAATTTTCTGC+AGG - Chr4:19778207-19778226 MsG0480019409.01.T01:intron 25.0%
!!! ACTTCTAATTTTTTCTTGGA+GGG - Chr4:19778418-19778437 MsG0480019409.01.T01:intron 25.0%
!!! ACTTGCTCTTTTATTTGAAT+AGG - Chr4:19777161-19777180 MsG0480019409.01.T01:intron 25.0%
!!! GTAAAAATACTAGTCTTACT+TGG + Chr4:19778838-19778857 None:intergenic 25.0%
!!! GTTCCATTTTATTTAGATGA+AGG + Chr4:19779321-19779340 None:intergenic 25.0%
!!! TAAATATTGATTTGTAGACG+TGG + Chr4:19778579-19778598 None:intergenic 25.0%
!!! TACTTCTAATTTTTTCTTGG+AGG - Chr4:19778417-19778436 MsG0480019409.01.T01:intron 25.0%
!!! TGAGTTTTTATGTTTCTAGA+GGG + Chr4:19778782-19778801 None:intergenic 25.0%
!!! TTGAGTTTTTATGTTTCTAG+AGG + Chr4:19778783-19778802 None:intergenic 25.0%
AAATGGAAAGAAAGAATGAG+AGG + Chr4:19775556-19775575 None:intergenic 30.0%
AACTACCTGCTTAATATTCA+AGG + Chr4:19776183-19776202 None:intergenic 30.0%
AAGCTGAAAAATGCTTATAG+AGG + Chr4:19777859-19777878 None:intergenic 30.0%
AATATCATAGGTAACTGATC+GGG + Chr4:19775887-19775906 None:intergenic 30.0%
AATCTGTATCAGTTTCAAGA+TGG + Chr4:19779582-19779601 None:intergenic 30.0%
AATGATGCAAACTTTACTGT+TGG - Chr4:19777635-19777654 MsG0480019409.01.T01:intron 30.0%
AATGGAAAGAAAGAATGAGA+GGG + Chr4:19775555-19775574 None:intergenic 30.0%
ACAAACATTTGCAATCATTG+GGG + Chr4:19777095-19777114 None:intergenic 30.0%
ACAAGAGCAATGTCTAAATA+TGG + Chr4:19780762-19780781 None:intergenic 30.0%
AGACAATAAATACCTACGAT+AGG + Chr4:19776757-19776776 None:intergenic 30.0%
AGCAGAGTAAGAATGTAAAA+TGG + Chr4:19775573-19775592 None:intergenic 30.0%
AGGTATTTATTGTCTACCTT+CGG - Chr4:19776762-19776781 MsG0480019409.01.T01:intron 30.0%
AGTAAAGTTTGCATCATTGA+AGG + Chr4:19777633-19777652 None:intergenic 30.0%
AGTCAACTAAATGCCTATAT+AGG - Chr4:19775930-19775949 MsG0480019409.01.T01:CDS 30.0%
AGTCAATATTGGATATTCCT+AGG - Chr4:19778959-19778978 MsG0480019409.01.T01:CDS 30.0%
ATCAACTAAAATCCCATGAA+CGG + Chr4:19779559-19779578 None:intergenic 30.0%
ATCCTTAGATTAGAATCTGT+TGG - Chr4:19777333-19777352 MsG0480019409.01.T01:CDS 30.0%
ATCGAGGTCAAAGTTATAAA+AGG - Chr4:19778639-19778658 MsG0480019409.01.T01:intron 30.0%
ATGATGTACTAAAACGAGTT+TGG - Chr4:19780010-19780029 MsG0480019409.01.T01:CDS 30.0%
ATTTATACACAATGTAACGC+GGG - Chr4:19776412-19776431 MsG0480019409.01.T01:intron 30.0%
CAACAAACATTTGCAATCAT+TGG + Chr4:19777097-19777116 None:intergenic 30.0%
CACAATGTATTTCAATTCAC+TGG - Chr4:19779857-19779876 MsG0480019409.01.T01:intron 30.0%
CAGTAACATTGCTTATTAAC+TGG - Chr4:19780402-19780421 MsG0480019409.01.T01:intron 30.0%
CGTGAAATGAAACAATGTAT+TGG - Chr4:19775744-19775763 MsG0480019409.01.T01:intron 30.0%
CTGTCAATATTGCATTAACA+TGG + Chr4:19777933-19777952 None:intergenic 30.0%
GAATATCATAGGTAACTGAT+CGG + Chr4:19775888-19775907 None:intergenic 30.0%
GATGAATTTCCCTAATCATA+AGG + Chr4:19779895-19779914 None:intergenic 30.0%
GCTACCATAATAATGATAAG+CGG + Chr4:19779943-19779962 None:intergenic 30.0%
GCTTATAGAGGATAACAAAT+AGG + Chr4:19777847-19777866 None:intergenic 30.0%
GTCAACTAAATGCCTATATA+GGG - Chr4:19775931-19775950 MsG0480019409.01.T01:CDS 30.0%
GTTTCCGCTTATCATTATTA+TGG - Chr4:19779936-19779955 MsG0480019409.01.T01:intron 30.0%
TAAAAGGAACTATGGTATAG+TGG - Chr4:19778655-19778674 MsG0480019409.01.T01:intron 30.0%
TAAACAAGAAAGGGAAAATG+TGG - Chr4:19778456-19778475 MsG0480019409.01.T01:intron 30.0%
TAATCCAAAAACTAAGATGC+GGG + Chr4:19776618-19776637 None:intergenic 30.0%
TAGACAGAAAAAAACCATGA+AGG + Chr4:19778000-19778019 None:intergenic 30.0%
TATCTTGAATAGGAAACACA+AGG - Chr4:19779075-19779094 MsG0480019409.01.T01:intron 30.0%
TATTTATAAGCTCGTAAAGG+TGG - Chr4:19776024-19776043 MsG0480019409.01.T01:intron 30.0%
TATTTGAATAGGTCTAAGTG+GGG - Chr4:19777172-19777191 MsG0480019409.01.T01:intron 30.0%
TCAAATCCAACATCCATATT+TGG + Chr4:19776979-19776998 None:intergenic 30.0%
TCGACTACAAAGAATGTTTA+AGG + Chr4:19778515-19778534 None:intergenic 30.0%
TGCAAAACTTAGCTTATGAA+AGG + Chr4:19777816-19777835 None:intergenic 30.0%
TGTAGATTCTTGTAAGCATT+TGG - Chr4:19777741-19777760 MsG0480019409.01.T01:intron 30.0%
TGTAGGGAAAAGAATATATC+AGG - Chr4:19780506-19780525 MsG0480019409.01.T01:intron 30.0%
TGTTCTCTTCATTCCAAATA+TGG - Chr4:19776963-19776982 MsG0480019409.01.T01:intron 30.0%
TTCATTCCAAATATGGATGT+TGG - Chr4:19776970-19776989 MsG0480019409.01.T01:intron 30.0%
TTGGTTGACAATCTATTGTT+TGG - Chr4:19780029-19780048 MsG0480019409.01.T01:exon 30.0%
TTTACTCTATCAAGCAAGAA+AGG + Chr4:19780545-19780564 None:intergenic 30.0%
TTTCATAAGCTCAATCCAAA+CGG - Chr4:19776121-19776140 MsG0480019409.01.T01:CDS 30.0%
TTTGCAACAAATGCTAATGA+TGG + Chr4:19776304-19776323 None:intergenic 30.0%
! AACTCCCAATATAGTTGATA+TGG - Chr4:19779416-19779435 MsG0480019409.01.T01:intron 30.0%
! AAGCATTTGGAGTAAACTAA+TGG - Chr4:19777754-19777773 MsG0480019409.01.T01:intron 30.0%
! AATGAGAGGGGATTTAAAAT+TGG + Chr4:19775542-19775561 None:intergenic 30.0%
! AATTCACAGATTTAACTTCC+AGG + Chr4:19779283-19779302 None:intergenic 30.0%
! ACAATGTATTGGTATTTAGG+AGG - Chr4:19775755-19775774 MsG0480019409.01.T01:intron 30.0%
! ATTCACAGATTTAACTTCCA+GGG + Chr4:19779282-19779301 None:intergenic 30.0%
! ATTTAACATTTGCCACTTGT+AGG - Chr4:19780489-19780508 MsG0480019409.01.T01:intron 30.0%
! CAAAATAGGCCTTATGATTA+GGG - Chr4:19779883-19779902 MsG0480019409.01.T01:intron 30.0%
! CTCGGAATATATTTTCATCA+AGG - Chr4:19777483-19777502 MsG0480019409.01.T01:intron 30.0%
! GCAACTATTGCAATTTTAGA+TGG - Chr4:19776727-19776746 MsG0480019409.01.T01:intron 30.0%
! GGATTTAAAATTGGAAGACA+AGG + Chr4:19775533-19775552 None:intergenic 30.0%
! TAGGCATTTAGTTGACTTAT+TGG + Chr4:19775927-19775946 None:intergenic 30.0%
! TATATTCTTTTCCCTACAAG+TGG + Chr4:19780504-19780523 None:intergenic 30.0%
! TATGCAAAGGTTGATTCATT+TGG + Chr4:19778394-19778413 None:intergenic 30.0%
! TCAAAATAGGCCTTATGATT+AGG - Chr4:19779882-19779901 MsG0480019409.01.T01:intron 30.0%
! TCTAAAATTGCAATAGTTGC+AGG + Chr4:19776727-19776746 None:intergenic 30.0%
! TTTAACATTTGCCACTTGTA+GGG - Chr4:19780490-19780509 MsG0480019409.01.T01:intron 30.0%
!! ATTGTGATGGAATTCCTTTT+TGG - Chr4:19779599-19779618 MsG0480019409.01.T01:intron 30.0%
!! CAATTCACTGGTTTCAAAAT+AGG - Chr4:19779869-19779888 MsG0480019409.01.T01:intron 30.0%
!! CTATCTATTTTGCTTTTAGG+TGG - Chr4:19778037-19778056 MsG0480019409.01.T01:intron 30.0%
!! GTTTGCAAATTTTGAGGATA+TGG + Chr4:19776661-19776680 None:intergenic 30.0%
!! TGTTTCTGCAACAATGTTTT+TGG - Chr4:19778085-19778104 MsG0480019409.01.T01:intron 30.0%
!!! AACAATGTTTTTGGCTTCTA+TGG - Chr4:19778094-19778113 MsG0480019409.01.T01:intron 30.0%
!!! CATTTTAAGATTTGACGCAT+GGG - Chr4:19779962-19779981 MsG0480019409.01.T01:intron 30.0%
!!! GGATTATGCTCTTGTTTTTA+GGG - Chr4:19776632-19776651 MsG0480019409.01.T01:intron 30.0%
!!! TCAAATTTTGGTTTACCGAA+TGG - Chr4:19779170-19779189 MsG0480019409.01.T01:intron 30.0%
!!! TGGATTATGCTCTTGTTTTT+AGG - Chr4:19776631-19776650 MsG0480019409.01.T01:intron 30.0%
AAAAGATGGCTGAAGATACT+CGG - Chr4:19777465-19777484 MsG0480019409.01.T01:intron 35.0%
AAATTTGCAAACTGCGAAAG+AGG - Chr4:19776669-19776688 MsG0480019409.01.T01:intron 35.0%
AATGTTTCCCTTGCCTATTA+AGG + Chr4:19780110-19780129 None:intergenic 35.0%
AGAAGCAAACATCAAACTCA+AGG - Chr4:19780229-19780248 MsG0480019409.01.T01:intron 35.0%
AGTACATCTTTCCACTTCTT+TGG + Chr4:19777367-19777386 None:intergenic 35.0%
ATCATAGTTATGACAGAGGA+TGG - Chr4:19775857-19775876 MsG0480019409.01.T01:intron 35.0%
ATGGAAAGAAAGAATGAGAG+GGG + Chr4:19775554-19775573 None:intergenic 35.0%
CAATACAATATCTGCTTCTC+AGG + Chr4:19778719-19778738 None:intergenic 35.0%
CATCATCATAGTTATGACAG+AGG - Chr4:19775853-19775872 MsG0480019409.01.T01:intron 35.0%
CATTTATATGCTGCTGAGAA+AGG + Chr4:19779253-19779272 None:intergenic 35.0%
CTCTCTTATTCTTGCTTGTT+TGG - Chr4:19779343-19779362 MsG0480019409.01.T01:CDS 35.0%
CTGTTTAAGAAACCACAAGT+TGG + Chr4:19779917-19779936 None:intergenic 35.0%
GAAACTGATACAGATTGTGA+TGG - Chr4:19779586-19779605 MsG0480019409.01.T01:intron 35.0%
GAATCTACCATCATTTCACA+TGG - Chr4:19776546-19776565 MsG0480019409.01.T01:intron 35.0%
GACAATCTATTGTTTGGTCA+TGG - Chr4:19780035-19780054 MsG0480019409.01.T01:intron 35.0%
GACCAACAGATTCTAATCTA+AGG + Chr4:19777338-19777357 None:intergenic 35.0%
GCAAATGATAAACTAGCAAG+AGG + Chr4:19777683-19777702 None:intergenic 35.0%
GTGAAGAATAATGCCCTTAT+TGG - Chr4:19780780-19780799 MsG0480019409.01.T01:five_prime_UTR 35.0%
TATATAATCAACAGGGGAAC+TGG + Chr4:19779741-19779760 None:intergenic 35.0%
TATCAGATGTGGATCCAAAA+AGG + Chr4:19779616-19779635 None:intergenic 35.0%
TGCTGGTGTAAAGTCAATAT+TGG - Chr4:19778948-19778967 MsG0480019409.01.T01:CDS 35.0%
TGGAGATTTATGTGTAGTGT+GGG - Chr4:19778675-19778694 MsG0480019409.01.T01:intron 35.0%
TTAATTTCCAGGTTCCATGT+CGG - Chr4:19780059-19780078 MsG0480019409.01.T01:intron 35.0%
! ACATGTTCTGGTCCAAATTT+TGG - Chr4:19778366-19778385 MsG0480019409.01.T01:intron 35.0%
! ACTTGAAAGGTTAGCTACTT+TGG - Chr4:19777199-19777218 MsG0480019409.01.T01:intron 35.0%
! AGCAACTTTAGCTCCAATAA+GGG + Chr4:19780796-19780815 None:intergenic 35.0%
! ATGTATTGGTATTTAGGAGG+AGG - Chr4:19775758-19775777 MsG0480019409.01.T01:intron 35.0%
! CGTTTATCTTTTAGACGTCA+TGG + Chr4:19777059-19777078 None:intergenic 35.0%
! CTTCAAAATTTTCTGCAGGT+TGG - Chr4:19778211-19778230 MsG0480019409.01.T01:intron 35.0%
! CTTGAAAGGTTAGCTACTTT+GGG - Chr4:19777200-19777219 MsG0480019409.01.T01:intron 35.0%
! GCAATCATAATTCACTGACT+TGG - Chr4:19779452-19779471 MsG0480019409.01.T01:intron 35.0%
! TGTATTGGTATTTAGGAGGA+GGG - Chr4:19775759-19775778 MsG0480019409.01.T01:intron 35.0%
! TTCGCAGTTTGCAAATTTTG+AGG + Chr4:19776667-19776686 None:intergenic 35.0%
! TTTAAGGTCTCTTCTGTGAA+AGG + Chr4:19778499-19778518 None:intergenic 35.0%
!! CTGCAAGGTACTTCAAATTT+TGG - Chr4:19779158-19779177 MsG0480019409.01.T01:intron 35.0%
!! GAAGGTATTGTGAGAAAGAA+CGG - Chr4:19776694-19776713 MsG0480019409.01.T01:intron 35.0%
!! TTCTTCAAGGGCTTTATTGA+TGG + Chr4:19780327-19780346 None:intergenic 35.0%
!! TTTAGCTTTCTAACAGCTCA+AGG + Chr4:19776159-19776178 None:intergenic 35.0%
!! TTTCTGAAGCGTTATCACTT+GGG - Chr4:19776505-19776524 MsG0480019409.01.T01:intron 35.0%
!!! GCATTTTAAGATTTGACGCA+TGG - Chr4:19779961-19779980 MsG0480019409.01.T01:intron 35.0%
!!! TCGTACTCGTGTTATTTTTG+TGG - Chr4:19776902-19776921 MsG0480019409.01.T01:intron 35.0%
AAACAATCTTCGACGACACT+TGG - Chr4:19776229-19776248 MsG0480019409.01.T01:intron 40.0%
AAGTTCACCTTGCTTCTTCA+AGG + Chr4:19780340-19780359 None:intergenic 40.0%
AATCCAAACGGACCCTATAT+AGG + Chr4:19775946-19775965 None:intergenic 40.0%
AGCAAGGATGACAAACCATT+CGG + Chr4:19779188-19779207 None:intergenic 40.0%
AGCTTCGTCAATCAATGTGA+AGG - Chr4:19776470-19776489 MsG0480019409.01.T01:intron 40.0%
AGGGAAATTCATCCAACTTG+TGG - Chr4:19779902-19779921 MsG0480019409.01.T01:intron 40.0%
AGTTCACCTTGCTTCTTCAA+GGG + Chr4:19780339-19780358 None:intergenic 40.0%
ATAAAGCCCTTGAAGAAGCA+AGG - Chr4:19780330-19780349 MsG0480019409.01.T01:intron 40.0%
ATGAATCACGATTCCGTTCA+TGG - Chr4:19779543-19779562 MsG0480019409.01.T01:CDS 40.0%
ATTCATGTCTTTGTGACTGG+TGG - Chr4:19778235-19778254 MsG0480019409.01.T01:intron 40.0%
CATGGAAACTTCTCTTCTGA+AGG + Chr4:19777915-19777934 None:intergenic 40.0%
CCACAAATAGCTAGACAGTT+AGG + Chr4:19776879-19776898 None:intergenic 40.0%
CCTAACTGTCTAGCTATTTG+TGG - Chr4:19776876-19776895 MsG0480019409.01.T01:intron 40.0%
CTTCTGTGAAAGGTCAAACA+TGG + Chr4:19778489-19778508 None:intergenic 40.0%
CTTGCTCTGCTAAGAGAAAA+CGG - Chr4:19780822-19780841 MsG0480019409.01.T01:five_prime_UTR 40.0%
GAAGACAAGGCTTACAGATA+CGG + Chr4:19775520-19775539 None:intergenic 40.0%
GATAGAGTAAATGCACTCAC+CGG - Chr4:19780554-19780573 MsG0480019409.01.T01:intron 40.0%
GCAAACATCAAACTCAAGGT+CGG - Chr4:19780233-19780252 MsG0480019409.01.T01:intron 40.0%
GCATATAAATGCATTCACCC+TGG - Chr4:19779262-19779281 MsG0480019409.01.T01:intron 40.0%
GGTATTCATGTCTTTGTGAC+TGG - Chr4:19778232-19778251 MsG0480019409.01.T01:intron 40.0%
GTGGAGATTTATGTGTAGTG+TGG - Chr4:19778674-19778693 MsG0480019409.01.T01:intron 40.0%
TAAGATTTGACGCATGGGAT+TGG - Chr4:19779967-19779986 MsG0480019409.01.T01:intron 40.0%
TAAGTGGGGAAGAACTTGAA+AGG - Chr4:19777186-19777205 MsG0480019409.01.T01:intron 40.0%
TAATTGAATGCACAGACCGA+AGG + Chr4:19776781-19776800 None:intergenic 40.0%
TAATTTCCAGGTTCCATGTC+GGG - Chr4:19780060-19780079 MsG0480019409.01.T01:intron 40.0%
TATAACCACTTGCACCTTCA+TGG - Chr4:19777983-19778002 MsG0480019409.01.T01:CDS 40.0%
TCCTATTCCTCAAGAACAGT+CGG - Chr4:19780277-19780296 MsG0480019409.01.T01:intron 40.0%
TGAATCACGATTCCGTTCAT+GGG - Chr4:19779544-19779563 MsG0480019409.01.T01:CDS 40.0%
TGACATCTTCAGCAGCTTTA+CGG - Chr4:19776204-19776223 MsG0480019409.01.T01:intron 40.0%
TGAGTAACGATCCTGCAAAT+TGG - Chr4:19776996-19777015 MsG0480019409.01.T01:intron 40.0%
TGCTAAGAGAAAACGGACAA+AGG - Chr4:19780829-19780848 MsG0480019409.01.T01:five_prime_UTR 40.0%
TGGTCTTCTAACCAAAGAAG+TGG - Chr4:19777353-19777372 MsG0480019409.01.T01:CDS 40.0%
TGTGCTTCCTTAATAGGCAA+GGG - Chr4:19780100-19780119 MsG0480019409.01.T01:intron 40.0%
TTCATGTCTTTGTGACTGGT+GGG - Chr4:19778236-19778255 MsG0480019409.01.T01:intron 40.0%
TTCGTCTGACATAGTCAACA+AGG - Chr4:19776253-19776272 MsG0480019409.01.T01:intron 40.0%
TTGGTCATGGCTTAATTTCC+AGG - Chr4:19780048-19780067 MsG0480019409.01.T01:intron 40.0%
! AAAAACCATGAAGGTGCAAG+TGG + Chr4:19777991-19778010 None:intergenic 40.0%
! AGGCTTTTTATTGCTCCGTT+TGG + Chr4:19776139-19776158 None:intergenic 40.0%
! ATTAAGGAAGCACACTCTTC+AGG + Chr4:19780094-19780113 None:intergenic 40.0%
! CAGCAACTTTAGCTCCAATA+AGG + Chr4:19780797-19780816 None:intergenic 40.0%
! CATTGAAGGCATAAGTGAGT+AGG + Chr4:19777619-19777638 None:intergenic 40.0%
! GAAGAGTGTGCTTCCTTAAT+AGG - Chr4:19780094-19780113 MsG0480019409.01.T01:intron 40.0%
! GAAGTGTCTTGTATCAGATG+TGG + Chr4:19779627-19779646 None:intergenic 40.0%
! GAATTTTCTTTGGGCAGCTA+TGG - Chr4:19778873-19778892 MsG0480019409.01.T01:intron 40.0%
! GCATATGTTGTGAGTGCTTT+TGG - Chr4:19777257-19777276 MsG0480019409.01.T01:CDS 40.0%
! GTTTTCTCTTAGCAGAGCAA+GGG + Chr4:19780823-19780842 None:intergenic 40.0%
! TTAAGGAAGCACACTCTTCA+GGG + Chr4:19780093-19780112 None:intergenic 40.0%
! TTCTTTTCCAGCCAATTTGC+AGG + Chr4:19777010-19777029 None:intergenic 40.0%
!! GTCGCTGTATCATGTCATTT+TGG - Chr4:19778172-19778191 MsG0480019409.01.T01:intron 40.0%
!! GTTTCTGAAGCGTTATCACT+TGG - Chr4:19776504-19776523 MsG0480019409.01.T01:intron 40.0%
!! TTTTGCTTTTAGGTGGCTAG+AGG - Chr4:19778044-19778063 MsG0480019409.01.T01:intron 40.0%
ACCAGATATTCAAGGGTCCT+AGG + Chr4:19778979-19778998 None:intergenic 45.0%
AGCTCAGAAAACAGCTCGAA+GGG - Chr4:19777229-19777248 MsG0480019409.01.T01:intron 45.0%
ATCAAACTCAAGGTCGGAAG+TGG - Chr4:19780239-19780258 MsG0480019409.01.T01:intron 45.0%
ATGCCTATATAGGGTCCGTT+TGG - Chr4:19775940-19775959 MsG0480019409.01.T01:CDS 45.0%
CAAACTGCGAAAGAGGTTGA+AGG - Chr4:19776676-19776695 MsG0480019409.01.T01:intron 45.0%
CAATGTGAAGGTAGCTTCAG+AGG - Chr4:19776482-19776501 MsG0480019409.01.T01:intron 45.0%
CCAGCACATATAACTGCTAC+TGG + Chr4:19778934-19778953 None:intergenic 45.0%
CCAGTAGCAGTTATATGTGC+TGG - Chr4:19778931-19778950 MsG0480019409.01.T01:intron 45.0%
CTTGAATCACCACTTTCGAG+AGG + Chr4:19779482-19779501 None:intergenic 45.0%
CTTGATGCTGTGAAAAAGGC+AGG + Chr4:19779135-19779154 None:intergenic 45.0%
GAGGATACTTGAAGCAAGTG+AGG + Chr4:19780585-19780604 None:intergenic 45.0%
GCCACTTGATGCTGTGAAAA+AGG + Chr4:19779139-19779158 None:intergenic 45.0%
GTCGGAAGTGGAATCTTGAT+AGG - Chr4:19780251-19780270 MsG0480019409.01.T01:intron 45.0%
GTGTGCTTCCTTAATAGGCA+AGG - Chr4:19780099-19780118 MsG0480019409.01.T01:intron 45.0%
TAACGATCCTGCAAATTGGC+TGG - Chr4:19777000-19777019 MsG0480019409.01.T01:intron 45.0%
TACTGGTGTTCTTCCAAGCT+CGG + Chr4:19778917-19778936 None:intergenic 45.0%
TCCTAGGACCCTTGAATATC+TGG - Chr4:19778975-19778994 MsG0480019409.01.T01:CDS 45.0%
TCGTTCAAGATCCGCCATAT+GGG + Chr4:19779674-19779693 None:intergenic 45.0%
TCTTCAGATATCACCGAGCT+TGG - Chr4:19778901-19778920 MsG0480019409.01.T01:intron 45.0%
TCTTTGTGACTGGTGGGATT+GGG - Chr4:19778242-19778261 MsG0480019409.01.T01:intron 45.0%
! CGTTTTCTCTTAGCAGAGCA+AGG + Chr4:19780824-19780843 None:intergenic 45.0%
! TAAGGAAGCACACTCTTCAG+GGG + Chr4:19780092-19780111 None:intergenic 45.0%
!! ACGACCCGCATCTTAGTTTT+TGG - Chr4:19776611-19776630 MsG0480019409.01.T01:intron 45.0%
!! GCCTTTTTCACAGCATCAAG+TGG - Chr4:19779135-19779154 MsG0480019409.01.T01:intron 45.0%
!! TAATAATAATTTAAGAAAAT+GGG - Chr4:19775650-19775669 MsG0480019409.01.T01:CDS 5.0%
ACTCACACGTTACACCACAC+CGG - Chr4:19775627-19775646 MsG0480019409.01.T01:intron 50.0%
AGAGTAAATGCACTCACCGG+AGG - Chr4:19780557-19780576 MsG0480019409.01.T01:intron 50.0%
AGCTCCAGCAGCATTAACTC+CGG + Chr4:19776454-19776473 None:intergenic 50.0%
ATAGCTAGACAGTTAGGCGC+AGG + Chr4:19776873-19776892 None:intergenic 50.0%
CAGGGGAACTGGCAGATAAA+AGG + Chr4:19779730-19779749 None:intergenic 50.0%
CTTGGCAAACCTCTCGAAAG+TGG - Chr4:19779470-19779489 MsG0480019409.01.T01:CDS 50.0%
CTTTGTGACTGGTGGGATTG+GGG - Chr4:19778243-19778262 MsG0480019409.01.T01:intron 50.0%
GAAAGGGAAAATGTGGCCTC+AGG - Chr4:19778463-19778482 MsG0480019409.01.T01:intron 50.0%
GAAAGGTCAAACATGGCCTG+AGG + Chr4:19778482-19778501 None:intergenic 50.0%
GAGCTCAGAAAACAGCTCGA+AGG - Chr4:19777228-19777247 MsG0480019409.01.T01:intron 50.0%
GCCGACTGTTCTTGAGGAAT+AGG + Chr4:19780281-19780300 None:intergenic 50.0%
GGGTTTGATATGCAGCCTAC+CGG - Chr4:19776432-19776451 MsG0480019409.01.T01:intron 50.0%
GTCGTTCAAGATCCGCCATA+TGG + Chr4:19779675-19779694 None:intergenic 50.0%
GTCTTTGTGACTGGTGGGAT+TGG - Chr4:19778241-19778260 MsG0480019409.01.T01:intron 50.0%
TAGGTGGCTAGAGGTGGAAA+TGG - Chr4:19778053-19778072 MsG0480019409.01.T01:intron 50.0%
TATCTACCCGACATGGAACC+TGG + Chr4:19780069-19780088 None:intergenic 50.0%
TTAGATGGCGTGCCTATCGT+AGG - Chr4:19776742-19776761 MsG0480019409.01.T01:intron 50.0%
TTTGTGACTGGTGGGATTGG+GGG - Chr4:19778244-19778263 MsG0480019409.01.T01:intron 50.0%
! AAGATCCGCCATATGGGTTG+AGG + Chr4:19779668-19779687 None:intergenic 50.0%
! ACAGATACGGACTGTGCTGT+GGG + Chr4:19775507-19775526 None:intergenic 50.0%
! AGATCCGCCATATGGGTTGA+GGG + Chr4:19779667-19779686 None:intergenic 50.0%
! TACAGATACGGACTGTGCTG+TGG + Chr4:19775508-19775527 None:intergenic 50.0%
!! CGAGCTGTTTTCTGAGCTCT+GGG + Chr4:19777227-19777246 None:intergenic 50.0%
!! TCGAGCTGTTTTCTGAGCTC+TGG + Chr4:19777228-19777247 None:intergenic 50.0%
!! TGCTTTTAGGTGGCTAGAGG+TGG - Chr4:19778047-19778066 MsG0480019409.01.T01:intron 50.0%
ATTGGGGGAGTTCACAGGCA+TGG - Chr4:19778259-19778278 MsG0480019409.01.T01:intron 55.0%
CACAGCATCAAGTGGCTGCA+AGG - Chr4:19779143-19779162 MsG0480019409.01.T01:intron 55.0%
CCAACACACACAGAGAGACG+TGG + Chr4:19775696-19775715 None:intergenic 55.0%
CCACGTCTCTCTGTGTGTGT+TGG - Chr4:19775693-19775712 MsG0480019409.01.T01:CDS 55.0%
CCAGAAGCCGACTGTTCTTG+AGG + Chr4:19780287-19780306 None:intergenic 55.0%
CCAGCAGCATTAACTCCGGT+AGG + Chr4:19776450-19776469 None:intergenic 55.0%
CCTACCGGAGTTAATGCTGC+TGG - Chr4:19776447-19776466 MsG0480019409.01.T01:intron 55.0%
GAGTGCACCCTCAACCCATA+TGG - Chr4:19779657-19779676 MsG0480019409.01.T01:intron 55.0%
TGCACCCTCAACCCATATGG+CGG - Chr4:19779660-19779679 MsG0480019409.01.T01:intron 55.0%
! ATACGGACTGTGCTGTGGGT+TGG + Chr4:19775503-19775522 None:intergenic 55.0%
! CCTCAAGAACAGTCGGCTTC+TGG - Chr4:19780284-19780303 MsG0480019409.01.T01:intron 55.0%
! TGAAGCAAGTGAGGCACCTC+CGG + Chr4:19780576-19780595 None:intergenic 55.0%
!! TCAGGGGTATCTACCCGACA+TGG + Chr4:19780076-19780095 None:intergenic 55.0%
GTGGGATTGGGGGAGTTCAC+AGG - Chr4:19778254-19778273 MsG0480019409.01.T01:intron 60.0%
TGGGCGTGCAGTTGTTGCTC+TGG - Chr4:19776524-19776543 MsG0480019409.01.T01:intron 60.0%
! GAGGGTGCACTCAACTGTGC+AGG + Chr4:19779649-19779668 None:intergenic 60.0%
!! ACTGTGCTGTGGGTTGGCTG+CGG + Chr4:19775497-19775516 None:intergenic 60.0%
!! TGCTGTGGGTTGGCTGCGGT+CGG + Chr4:19775493-19775512 None:intergenic 65.0%
!! TGTGGGTTGGCTGCGGTCGG+CGG + Chr4:19775490-19775509 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 19775390 19780854 19775390 ID=MsG0480019409.01;Name=MsG0480019409.01
Chr4 mRNA 19775390 19780854 19775390 ID=MsG0480019409.01.T01;Parent=MsG0480019409.01;Name=MsG0480019409.01.T01;_AED=0.50;_eAED=0.61;_QI=144|0.61|0.42|1|0.69|0.57|14|0|472
Chr4 exon 19775390 19775475 19775390 ID=MsG0480019409.01.T01:exon:7974;Parent=MsG0480019409.01.T01
Chr4 exon 19775648 19775733 19775648 ID=MsG0480019409.01.T01:exon:7973;Parent=MsG0480019409.01.T01
Chr4 exon 19775893 19776010 19775893 ID=MsG0480019409.01.T01:exon:7972;Parent=MsG0480019409.01.T01
Chr4 exon 19776099 19776174 19776099 ID=MsG0480019409.01.T01:exon:7971;Parent=MsG0480019409.01.T01
Chr4 exon 19777080 19777157 19777080 ID=MsG0480019409.01.T01:exon:7970;Parent=MsG0480019409.01.T01
Chr4 exon 19777248 19777404 19777248 ID=MsG0480019409.01.T01:exon:7969;Parent=MsG0480019409.01.T01
Chr4 exon 19777795 19778015 19777795 ID=MsG0480019409.01.T01:exon:7968;Parent=MsG0480019409.01.T01
Chr4 exon 19778129 19778188 19778129 ID=MsG0480019409.01.T01:exon:7967;Parent=MsG0480019409.01.T01
Chr4 exon 19778943 19779061 19778943 ID=MsG0480019409.01.T01:exon:7966;Parent=MsG0480019409.01.T01
Chr4 exon 19779296 19779389 19779296 ID=MsG0480019409.01.T01:exon:7965;Parent=MsG0480019409.01.T01
Chr4 exon 19779461 19779591 19779461 ID=MsG0480019409.01.T01:exon:7964;Parent=MsG0480019409.01.T01
Chr4 exon 19779677 19779797 19779677 ID=MsG0480019409.01.T01:exon:7963;Parent=MsG0480019409.01.T01
Chr4 exon 19779970 19780050 19779970 ID=MsG0480019409.01.T01:exon:7962;Parent=MsG0480019409.01.T01
Chr4 exon 19780720 19780854 19780720 ID=MsG0480019409.01.T01:exon:7961;Parent=MsG0480019409.01.T01
Chr4 five_prime_UTR 19780720 19780854 19780720 ID=MsG0480019409.01.T01:five_prime_utr;Parent=MsG0480019409.01.T01
Chr4 five_prime_UTR 19780042 19780050 19780042 ID=MsG0480019409.01.T01:five_prime_utr;Parent=MsG0480019409.01.T01
Chr4 CDS 19779970 19780041 19779970 ID=MsG0480019409.01.T01:cds;Parent=MsG0480019409.01.T01
Chr4 CDS 19779677 19779797 19779677 ID=MsG0480019409.01.T01:cds;Parent=MsG0480019409.01.T01
Chr4 CDS 19779461 19779591 19779461 ID=MsG0480019409.01.T01:cds;Parent=MsG0480019409.01.T01
Chr4 CDS 19779296 19779389 19779296 ID=MsG0480019409.01.T01:cds;Parent=MsG0480019409.01.T01
Chr4 CDS 19778943 19779061 19778943 ID=MsG0480019409.01.T01:cds;Parent=MsG0480019409.01.T01
Chr4 CDS 19778129 19778188 19778129 ID=MsG0480019409.01.T01:cds;Parent=MsG0480019409.01.T01
Chr4 CDS 19777795 19778015 19777795 ID=MsG0480019409.01.T01:cds;Parent=MsG0480019409.01.T01
Chr4 CDS 19777248 19777404 19777248 ID=MsG0480019409.01.T01:cds;Parent=MsG0480019409.01.T01
Chr4 CDS 19777080 19777157 19777080 ID=MsG0480019409.01.T01:cds;Parent=MsG0480019409.01.T01
Chr4 CDS 19776099 19776174 19776099 ID=MsG0480019409.01.T01:cds;Parent=MsG0480019409.01.T01
Chr4 CDS 19775893 19776010 19775893 ID=MsG0480019409.01.T01:cds;Parent=MsG0480019409.01.T01
Chr4 CDS 19775648 19775733 19775648 ID=MsG0480019409.01.T01:cds;Parent=MsG0480019409.01.T01
Chr4 CDS 19775390 19775475 19775390 ID=MsG0480019409.01.T01:cds;Parent=MsG0480019409.01.T01
Gene Sequence

>MsG0480019409.01.T01

ATGACATCTTCAGCAGCTTTACGGATAAACAATCTTCGACGACACTTGGATTCGTCTGACATAGTCAACAAGCCTACCGGAGTTAATGCTGCTGGAGCTTCGTCAATCAATGTGAAGGTAGCTTCAGAGGTTTCTGAAGCGTTATCACTTGGGCGTGCAGTTGTTGCTCTGGAATCTACCATCATTTCACATGGGATGCCATATCCTCAAAATTTGCAAACTGCGAAAGAGGTTGAAGGTATTGTGAGAAAGAACGGTGCAGTTCCTGCAACTATTGCAATTTTAGATGGCGTGCCTATCGTAGGTATTTATTGTCTACCTTCGAAGAATGATGAAATGCCTGCGCCTAACTGTCTAGCTATTTGTGGATTTCGTACTCGTGTTATTTTTGTGGATATAAAGTATGATTTCGATACTGGTCTAAGTGGGGAAGAACTTGAAAGGTTAGCTACTTTGGGACCCAGAGCTCAGAAAACAGCTCGAAGGGATATTGCATATGTTGTGAGTGCTTTTGGTTTCACCATAGATCATATTTATGTGGCTAGAGGTGGAAATGGTGCTACTACTGTTTCTGCAACAATGTTTTTGGCTTCTATGGTTGGTATTCATGTCTTTGTGACTGGTGGGATTGGGGGAGTTCACAGGCATGGCGAATATAGTACGTTCATCTCCTATGTCTTAATGATAGAAAAAATGGTTTTCATAATGAATAGTGGCAATTCTAGTAAGATAAAACATGTTCTGGTCCAAATTTTGGAACCAAATGAATCAACCTTTGCATATTTTACTTCTAATTTTTTCTTGGAGGGACAACAATTTAAGACTAGTATTTTTACTGTGCATATTGTTTTGAATTTTCTTTGGGCAGCTATGGACATATCTTCAGATATCACCGAGCTTGGAAGAACACCAGTAGCAGTTATATGTGCTGGTGTAAAGTCAATATTGGATATTCCTAGGACCCTTGAATATCTGGAAACACAAGGAGTTTGTGTTGCTGCTTACAAGACGAATGAGTTTCCTGCCTTTTTCACAGCATCAAGTGGCTGCAAGGTTCCATGTCGGGTAGATACCCCTGAAGAGTGTGCTTCCTTAATAGGCAAGGGAAACATTCTTATTCATTTTCAGTCAAACATCAAACTCAAGGTCGGAAGTGGAATCTTGATAGGAGTTCCTATTCCTCAAGAACAGTCGGCTTCTGGACACATAATTGAATCTGCCATCAATAAAGCCCTTGAAGAAGCAAGGGAAAAGAATATATCAGGAAATGCTCAGACTCCTTTCTTGCTTGATAGAGTAAATGCACTCACCGGAGGTGCCTCACTTGCTTCAAACATTGCTCTTGTGAAGAATAATGCCCTTATTGGAGCTAAAGTTGCTGAAACCCTTGCTCTGCTAAGAGAAAACGGACAAAGGTGA

Protein sequence

>MsG0480019409.01.T01

MTSSAALRINNLRRHLDSSDIVNKPTGVNAAGASSINVKVASEVSEALSLGRAVVALESTIISHGMPYPQNLQTAKEVEGIVRKNGAVPATIAILDGVPIVGIYCLPSKNDEMPAPNCLAICGFRTRVIFVDIKYDFDTGLSGEELERLATLGPRAQKTARRDIAYVVSAFGFTIDHIYVARGGNGATTVSATMFLASMVGIHVFVTGGIGGVHRHGEYSTFISYVLMIEKMVFIMNSGNSSKIKHVLVQILEPNESTFAYFTSNFFLEGQQFKTSIFTVHIVLNFLWAAMDISSDITELGRTPVAVICAGVKSILDIPRTLEYLETQGVCVAAYKTNEFPAFFTASSGCKVPCRVDTPEECASLIGKGNILIHFQSNIKLKVGSGILIGVPIPQEQSASGHIIESAINKALEEAREKNISGNAQTPFLLDRVNALTGGASLASNIALVKNNALIGAKVAETLALLRENGQR*