Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006766.01.T01 | XP_003593639.1 | 86.471 | 170 | 19 | 1 | 1 | 170 | 1 | 166 | 1.14E-93 | 286 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006766.01.T01 | G7ISF7 | 86.471 | 170 | 19 | 1 | 1 | 170 | 1 | 166 | 5.45e-94 | 286 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048856.01 | MsG0280006766.01 | 0.805812 | 1.114286e-49 | 5.952156e-47 |
| MsG0180000091.01 | MsG0280006766.01 | 0.816817 | 4.547416e-52 | 3.255815e-49 |
| MsG0180000145.01 | MsG0280006766.01 | 0.815397 | 9.442846e-52 | 6.502932e-49 |
| MsG0180000470.01 | MsG0280006766.01 | 0.845644 | 3.570985e-59 | 5.991086e-56 |
| MsG0180001892.01 | MsG0280006766.01 | 0.818859 | 1.572720e-52 | 1.191086e-49 |
| MsG0180002377.01 | MsG0280006766.01 | 0.802754 | 4.829337e-49 | 2.384814e-46 |
| MsG0180003951.01 | MsG0280006766.01 | 0.808398 | 3.158369e-50 | 1.804050e-47 |
| MsG0180004500.01 | MsG0280006766.01 | 0.804498 | 2.098954e-49 | 1.083849e-46 |
| MsG0180004765.01 | MsG0280006766.01 | 0.820637 | 6.174870e-53 | 4.912376e-50 |
| MsG0180005153.01 | MsG0280006766.01 | 0.808988 | 2.362475e-50 | 1.370463e-47 |
| MsG0180005730.01 | MsG0280006766.01 | 0.802086 | 6.630095e-49 | 3.218756e-46 |
| MsG0280006491.01 | MsG0280006766.01 | 0.801501 | 8.739481e-49 | 4.180415e-46 |
| MsG0280006601.01 | MsG0280006766.01 | 0.807856 | 4.119403e-50 | 2.319487e-47 |
| MsG0280006766.01 | MsG0280007224.01 | -0.807985 | 3.868631e-50 | 2.185709e-47 |
| MsG0280006766.01 | MsG0280007547.01 | 0.817586 | 3.053761e-52 | 2.232894e-49 |
| MsG0280006766.01 | MsG0280007955.01 | 0.822403 | 2.413958e-53 | 2.018579e-50 |
| MsG0280006766.01 | MsG0280008257.01 | 0.811728 | 6.056358e-51 | 3.777753e-48 |
| MsG0280006766.01 | MsG0280009868.01 | 0.800216 | 1.599564e-48 | 7.406099e-46 |
| MsG0280006766.01 | MsG0280010349.01 | 0.821974 | 3.034868e-53 | 2.506648e-50 |
| MsG0280006766.01 | MsG0280010350.01 | 0.822783 | 1.968796e-53 | 1.664200e-50 |
| MsG0280006766.01 | MsG0280010366.01 | 0.832539 | 8.923185e-56 | 1.000382e-52 |
| MsG0280006766.01 | MsG0280010443.01 | 0.811253 | 7.677278e-51 | 4.729204e-48 |
| MsG0280006766.01 | MsG0380011609.01 | 0.804533 | 2.063511e-49 | 1.066534e-46 |
| MsG0280006766.01 | MsG0380012067.01 | 0.841521 | 4.517092e-58 | 6.654769e-55 |
| MsG0280006766.01 | MsG0380012365.01 | 0.802776 | 4.778249e-49 | 2.360973e-46 |
| MsG0280006766.01 | MsG0380012371.01 | 0.804046 | 2.606755e-49 | 1.330608e-46 |
| MsG0280006766.01 | MsG0380013183.01 | 0.806934 | 6.461758e-50 | 3.552320e-47 |
| MsG0280006766.01 | MsG0380013549.01 | 0.805421 | 1.345653e-49 | 7.116123e-47 |
| MsG0280006766.01 | MsG0380014468.01 | 0.822463 | 2.336874e-53 | 1.957405e-50 |
| MsG0280006766.01 | MsG0380014495.01 | 0.808416 | 3.130824e-50 | 1.789119e-47 |
| MsG0280006766.01 | MsG0380015332.01 | 0.821422 | 4.072872e-53 | 3.312090e-50 |
| MsG0280006766.01 | MsG0380015589.01 | 0.808578 | 2.891243e-50 | 1.659169e-47 |
| MsG0280006766.01 | MsG0380015808.01 | 0.808505 | 2.996971e-50 | 1.716612e-47 |
| MsG0280006766.01 | MsG0380016517.01 | 0.800211 | 1.602919e-48 | 7.420763e-46 |
| MsG0280006766.01 | MsG0380017461.01 | 0.832835 | 7.533561e-56 | 8.520448e-53 |
| MsG0280006766.01 | MsG0380017498.01 | 0.801432 | 9.031544e-49 | 4.312424e-46 |
| MsG0280006766.01 | MsG0380018075.01 | 0.802054 | 6.729729e-49 | 3.264497e-46 |
| MsG0280006766.01 | MsG0480018183.01 | 0.841322 | 5.096393e-58 | 7.460718e-55 |
| MsG0280006766.01 | MsG0480018251.01 | 0.803266 | 3.784271e-49 | 1.893261e-46 |
| MsG0280006766.01 | MsG0480018653.01 | 0.853213 | 2.772114e-61 | 5.945058e-58 |
| MsG0280006766.01 | MsG0480019409.01 | 0.808834 | 2.549404e-50 | 1.472818e-47 |
| MsG0280006766.01 | MsG0480020739.01 | 0.803887 | 2.813085e-49 | 1.430122e-46 |
| MsG0280006766.01 | MsG0480021056.01 | 0.805839 | 1.099839e-49 | 5.879129e-47 |
| MsG0280006766.01 | MsG0480021869.01 | 0.803814 | 2.913106e-49 | 1.478132e-46 |
| MsG0280006766.01 | MsG0480021870.01 | 0.831140 | 1.976030e-55 | 2.125417e-52 |
| MsG0280006766.01 | MsG0480023172.01 | 0.809955 | 1.465149e-50 | 8.720960e-48 |
| MsG0280006766.01 | MsG0480023251.01 | 0.816674 | 4.896503e-52 | 3.492008e-49 |
| MsG0280006766.01 | MsG0480023463.01 | 0.824543 | 7.624695e-54 | 6.774423e-51 |
| MsG0280006766.01 | MsG0580024038.01 | 0.804194 | 2.428062e-49 | 1.244069e-46 |
| MsG0280006766.01 | MsG0580025332.01 | 0.800905 | 1.157556e-48 | 5.454396e-46 |
| MsG0280006766.01 | MsG0580025723.01 | 0.823476 | 1.356907e-53 | 1.169587e-50 |
| MsG0280006766.01 | MsG0580025816.01 | 0.813843 | 2.085017e-51 | 1.376592e-48 |
| MsG0280006766.01 | MsG0580025987.01 | 0.837022 | 6.639634e-57 | 8.516020e-54 |
| MsG0280006766.01 | MsG0580026131.01 | 0.815838 | 7.527951e-52 | 5.247204e-49 |
| MsG0280006766.01 | MsG0580026726.01 | 0.804727 | 1.880287e-49 | 9.768047e-47 |
| MsG0280006766.01 | MsG0580027922.01 | 0.802408 | 5.691073e-49 | 2.785727e-46 |
| MsG0280006766.01 | MsG0680030880.01 | 0.848627 | 5.434259e-60 | 1.003294e-56 |
| MsG0280006766.01 | MsG0680031431.01 | 0.802523 | 5.389180e-49 | 2.645465e-46 |
| MsG0280006766.01 | MsG0680031650.01 | 0.802392 | 5.734608e-49 | 2.805917e-46 |
| MsG0280006766.01 | MsG0680032771.01 | 0.809292 | 2.033519e-50 | 1.189337e-47 |
| MsG0280006766.01 | MsG0680033412.01 | 0.831515 | 1.597771e-55 | 1.737898e-52 |
| MsG0280006766.01 | MsG0680033465.01 | 0.800314 | 1.527171e-48 | 7.088997e-46 |
| MsG0280006766.01 | MsG0680033928.01 | 0.802337 | 5.886469e-49 | 2.876123e-46 |
| MsG0280006766.01 | MsG0680034739.01 | 0.807762 | 4.313478e-50 | 2.422852e-47 |
| MsG0280006766.01 | MsG0680035005.01 | 0.814589 | 1.426542e-51 | 9.611205e-49 |
| MsG0280006766.01 | MsG0680035034.01 | 0.813397 | 2.613199e-51 | 1.704684e-48 |
| MsG0280006766.01 | MsG0680035123.01 | 0.802755 | 4.825682e-49 | 2.383085e-46 |
| MsG0280006766.01 | MsG0680035498.01 | 0.801796 | 7.604852e-49 | 3.664815e-46 |
| MsG0280006766.01 | MsG0680035580.01 | 0.817590 | 3.048213e-52 | 2.229048e-49 |
| MsG0280006766.01 | MsG0780036018.01 | 0.818887 | 1.550132e-52 | 1.174880e-49 |
| MsG0280006766.01 | MsG0780036190.01 | 0.806785 | 6.950712e-50 | 3.806288e-47 |
| MsG0280006766.01 | MsG0780036602.01 | 0.820553 | 6.453466e-53 | 5.122639e-50 |
| MsG0280006766.01 | MsG0780037054.01 | 0.821636 | 3.633954e-53 | 2.972831e-50 |
| MsG0280006766.01 | MsG0780037457.01 | 0.814610 | 1.411620e-51 | 9.515897e-49 |
| MsG0280006766.01 | MsG0780038377.01 | 0.802460 | 5.550820e-49 | 2.720630e-46 |
| MsG0280006766.01 | MsG0780038386.01 | 0.801942 | 7.096435e-49 | 3.432441e-46 |
| MsG0280006766.01 | MsG0780038439.01 | 0.804519 | 2.077310e-49 | 1.073266e-46 |
| MsG0280006766.01 | MsG0780038907.01 | 0.801232 | 9.921083e-49 | 4.713498e-46 |
| MsG0280006766.01 | MsG0780039178.01 | 0.810063 | 1.388423e-50 | 8.287544e-48 |
| MsG0280006766.01 | MsG0780039443.01 | 0.835855 | 1.316250e-56 | 1.629754e-53 |
| MsG0280006766.01 | MsG0780039520.01 | 0.817107 | 3.914764e-52 | 2.825144e-49 |
| MsG0280006766.01 | MsG0780040074.01 | 0.830083 | 3.585354e-55 | 3.738659e-52 |
| MsG0280006766.01 | MsG0780040576.01 | -0.808808 | 2.581227e-50 | 1.490198e-47 |
| MsG0280006766.01 | MsG0780041229.01 | 0.810819 | 9.536094e-51 | 5.807113e-48 |
| MsG0280006766.01 | MsG0880041863.01 | 0.802581 | 5.243184e-49 | 2.577653e-46 |
| MsG0280006766.01 | MsG0880042161.01 | 0.836841 | 7.385563e-57 | 9.420923e-54 |
| MsG0280006766.01 | MsG0880042434.01 | 0.812529 | 4.049194e-51 | 2.580848e-48 |
| MsG0280006766.01 | MsG0880042520.01 | 0.810231 | 1.277743e-50 | 7.659913e-48 |
| MsG0280006766.01 | MsG0880042656.01 | 0.820774 | 5.742708e-53 | 4.586450e-50 |
| MsG0280006766.01 | MsG0880043157.01 | 0.810903 | 9.143300e-51 | 5.580685e-48 |
| MsG0280006766.01 | MsG0880043479.01 | 0.822160 | 2.747733e-53 | 2.281594e-50 |
| MsG0280006766.01 | MsG0880043480.01 | 0.825994 | 3.458982e-54 | 3.203310e-51 |
| MsG0280006766.01 | MsG0880043937.01 | 0.823438 | 1.384856e-53 | 1.192367e-50 |
| MsG0280006766.01 | MsG0880043941.01 | 0.830365 | 3.060333e-55 | 3.217553e-52 |
| MsG0280006766.01 | MsG0880044574.01 | 0.816281 | 5.995484e-52 | 4.230345e-49 |
| MsG0280006766.01 | MsG0880045765.01 | 0.802862 | 4.586721e-49 | 2.271219e-46 |
| MsG0280006766.01 | MsG0880045895.01 | 0.801186 | 1.014103e-48 | 4.812261e-46 |
| MsG0280006766.01 | MsG0880046264.01 | 0.802188 | 6.316046e-49 | 3.074165e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006766.01.T01 | MTR_2g014440 | 86.471 | 170 | 19 | 1 | 1 | 170 | 1 | 166 | 1.38e-97 | 286 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006766.01.T01 | AT1G28410 | 44.375 | 160 | 82 | 2 | 11 | 163 | 1 | 160 | 1.85e-27 | 106 |
| MsG0280006766.01.T01 | AT1G28410 | 44.375 | 160 | 82 | 2 | 11 | 163 | 1 | 160 | 1.85e-27 | 106 |
Find 31 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATACATAGGTACAACTTCTT+TGG | 0.235233 | 2:-5964802 | MsG0280006766.01.T01:intron |
| AAAGAGAGCTAATAAGAATA+AGG | 0.323248 | 2:+5965608 | None:intergenic |
| TACATAGGTACAACTTCTTT+GGG | 0.348459 | 2:-5964801 | MsG0280006766.01.T01:intron |
| AGAATAAGCTTTAGATACTT+TGG | 0.374804 | 2:+5963758 | None:intergenic |
| AATGGTAATGGTAATGGAAT+TGG | 0.378613 | 2:+5965632 | None:intergenic |
| TCTATTGATTCAGCTGAAAC+TGG | 0.388503 | 2:+5965567 | None:intergenic |
| AAGAAGATGCACATTCTTGA+AGG | 0.416371 | 2:-5963618 | MsG0280006766.01.T01:CDS |
| GGTTACTTCAAGAGTTGAAA+AGG | 0.444874 | 2:-5964702 | MsG0280006766.01.T01:intron |
| TAAGGTAATGGTAATGGTAA+TGG | 0.453497 | 2:+5965626 | None:intergenic |
| TAAGAATAAGGTAATGGTAA+TGG | 0.474570 | 2:+5965620 | None:intergenic |
| GGACGATAATGAAAAGAGTC+TGG | 0.477854 | 2:-5964729 | MsG0280006766.01.T01:CDS |
| TGCAAAGATGAGGGCTCTAA+AGG | 0.489938 | 2:-5963660 | MsG0280006766.01.T01:CDS |
| ATCAAAGTTGTTCTTTCTCA+AGG | 0.493797 | 2:+5964775 | None:intergenic |
| AGCTAATAAGAATAAGGTAA+TGG | 0.496744 | 2:+5965614 | None:intergenic |
| CATTAAAGCTCTGGAGGAAG+AGG | 0.496876 | 2:-5964920 | MsG0280006766.01.T01:intron |
| CTCTACTCTCTCTTCAATCA+AGG | 0.503720 | 2:-5965311 | MsG0280006766.01.T01:intron |
| TTCTTATTGTGCAAAGATGA+GGG | 0.516355 | 2:-5963669 | MsG0280006766.01.T01:CDS |
| TTTCTTATTGTGCAAAGATG+AGG | 0.519016 | 2:-5963670 | MsG0280006766.01.T01:CDS |
| TCAAGTTCAGCATCTTGAGC+AGG | 0.524922 | 2:-5963793 | MsG0280006766.01.T01:CDS |
| CAATCAAAAGCTAACTGAAA+GGG | 0.528049 | 2:-5965398 | MsG0280006766.01.T01:CDS |
| TGAGGGCTCTAAAGGCTCAA+TGG | 0.537828 | 2:-5963652 | MsG0280006766.01.T01:CDS |
| TAATGAAAAGAGTCTGGAAG+AGG | 0.556127 | 2:-5964723 | MsG0280006766.01.T01:CDS |
| CCAATCAAAAGCTAACTGAA+AGG | 0.558795 | 2:-5965399 | MsG0280006766.01.T01:CDS |
| TGAGACACACATTAAAGCTC+TGG | 0.562782 | 2:-5964929 | MsG0280006766.01.T01:CDS |
| AACCTCAAAATCGCTCACTT+AGG | 0.579766 | 2:-5965516 | MsG0280006766.01.T01:intron |
| AACAGCAGAGTGCAAAGCAG+AGG | 0.585005 | 2:-5965692 | MsG0280006766.01.T01:five_prime_UTR |
| CCATATCTTAAAATCTAAAG+CGG | 0.598538 | 2:-5964750 | MsG0280006766.01.T01:CDS |
| GACACACATTAAAGCTCTGG+AGG | 0.639572 | 2:-5964926 | MsG0280006766.01.T01:CDS |
| GAGAAGCATCACATTCGCAA+TGG | 0.646241 | 2:-5965661 | MsG0280006766.01.T01:exon |
| GTAATGGTAATGGAATTGGA+AGG | 0.663918 | 2:+5965636 | None:intergenic |
| GTGGCATTGTGACTGAACAG+TGG | 0.727418 | 2:-5963818 | MsG0280006766.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATATTAACTAATGCA+AGG | + | Chr2:5965418-5965437 | None:intergenic | 15.0% |
| !! | AAATATATATTTCATTGCTT+CGG | + | Chr2:5964769-5964788 | None:intergenic | 15.0% |
| !! | TGAATAAATTTATGTAAAAG+TGG | + | Chr2:5964129-5964148 | None:intergenic | 15.0% |
| !! | TTGGTATATAAATATAATGA+CGG | - | Chr2:5964687-5964706 | MsG0280006766.01.T01:intron | 15.0% |
| !!! | ATTCTAAAATATTCTTGTTT+AGG | - | Chr2:5964956-5964975 | MsG0280006766.01.T01:intron | 15.0% |
| !!! | ATTTTTTTCTACTCATTAAT+TGG | - | Chr2:5965366-5965385 | MsG0280006766.01.T01:CDS | 15.0% |
| !! | AAATTATTTGAATGCAGAAT+CGG | - | Chr2:5963841-5963860 | MsG0280006766.01.T01:intron | 20.0% |
| !! | AATATATATTTCATTGCTTC+GGG | + | Chr2:5964768-5964787 | None:intergenic | 20.0% |
| !! | AATTATACACTAGATCAAAA+CGG | + | Chr2:5965277-5965296 | None:intergenic | 20.0% |
| !! | TAAAGTAATCAAATTCATCT+TGG | + | Chr2:5965333-5965352 | None:intergenic | 20.0% |
| !! | TGGTATATAAATATAATGAC+GGG | - | Chr2:5964688-5964707 | MsG0280006766.01.T01:intron | 20.0% |
| !! | TTATTGAGAAGAGTAAAATT+AGG | + | Chr2:5964012-5964031 | None:intergenic | 20.0% |
| !!! | TTCAAAATCAAATTTTATCC+AGG | - | Chr2:5964202-5964221 | MsG0280006766.01.T01:intron | 20.0% |
| !!! | TTTAGAATGATCATGTATTT+CGG | + | Chr2:5964944-5964963 | None:intergenic | 20.0% |
| ! | AAAGAGAGCTAATAAGAATA+AGG | + | Chr2:5963670-5963689 | None:intergenic | 25.0% |
| ! | AAATGCAACATAAAATTCGA+AGG | + | Chr2:5963812-5963831 | None:intergenic | 25.0% |
| ! | ACTAATACTATGTATGGTAT+TGG | - | Chr2:5964668-5964687 | MsG0280006766.01.T01:intron | 25.0% |
| ! | AGCTAATAAGAATAAGGTAA+TGG | + | Chr2:5963664-5963683 | None:intergenic | 25.0% |
| ! | ATAGTGAATGATTTATGTTC+TGG | - | Chr2:5964418-5964437 | MsG0280006766.01.T01:intron | 25.0% |
| ! | ATGGTTACTAATACTATGTA+TGG | - | Chr2:5964662-5964681 | MsG0280006766.01.T01:intron | 25.0% |
| ! | CCATATCTTAAAATCTAAAG+CGG | - | Chr2:5964525-5964544 | MsG0280006766.01.T01:intron | 25.0% |
| ! | TTAATTCCTGTTAAACTTCT+TGG | - | Chr2:5964382-5964401 | MsG0280006766.01.T01:intron | 25.0% |
| !! | AAAATGTGTTATTATGCTTG+CGG | - | Chr2:5964248-5964267 | MsG0280006766.01.T01:intron | 25.0% |
| !! | AATGTATTGATCTTTCTTGT+AGG | - | Chr2:5964307-5964326 | MsG0280006766.01.T01:intron | 25.0% |
| !! | ATATTATGTTCTGCACATTT+TGG | - | Chr2:5964634-5964653 | MsG0280006766.01.T01:intron | 25.0% |
| !! | GCTTCAATTAGAATCAATTT+TGG | + | Chr2:5964086-5964105 | None:intergenic | 25.0% |
| !! | TAAGAATAAGGTAATGGTAA+TGG | + | Chr2:5963658-5963677 | None:intergenic | 25.0% |
| !! | TCAATTAGAATCAATTTTGG+TGG | + | Chr2:5964083-5964102 | None:intergenic | 25.0% |
| !! | TTTGTAAACCAAATTAGTCT+TGG | + | Chr2:5964984-5965003 | None:intergenic | 25.0% |
| !!! | AGAATAAGCTTTAGATACTT+TGG | + | Chr2:5965520-5965539 | None:intergenic | 25.0% |
| !!! | ATATTGTTTCACTTTTTCAG+CGG | - | Chr2:5965009-5965028 | MsG0280006766.01.T01:intron | 25.0% |
| !!! | TTATTTCTGTAACATGCATA+AGG | + | Chr2:5964724-5964743 | None:intergenic | 25.0% |
| AAACAACCAAGAAGTTTAAC+AGG | + | Chr2:5964391-5964410 | None:intergenic | 30.0% | |
| AATAACTGTACAATGAGGAT+CGG | - | Chr2:5964857-5964876 | MsG0280006766.01.T01:intron | 30.0% | |
| ATACATAGGTACAACTTCTT+TGG | - | Chr2:5964473-5964492 | MsG0280006766.01.T01:intron | 30.0% | |
| ATATCAGCTGAAATCTTTGT+GGG | + | Chr2:5965304-5965323 | None:intergenic | 30.0% | |
| ATCAAAGTTGTTCTTTCTCA+AGG | + | Chr2:5964503-5964522 | None:intergenic | 30.0% | |
| CAATCAAAAGCTAACTGAAA+GGG | - | Chr2:5963877-5963896 | MsG0280006766.01.T01:intron | 30.0% | |
| CTACTCATTAATTGGAGATA+TGG | - | Chr2:5965374-5965393 | MsG0280006766.01.T01:CDS | 30.0% | |
| TACATAGGTACAACTTCTTT+GGG | - | Chr2:5964474-5964493 | MsG0280006766.01.T01:intron | 30.0% | |
| TATATCAGCTGAAATCTTTG+TGG | + | Chr2:5965305-5965324 | None:intergenic | 30.0% | |
| TTAGCTAACCAACAACTAAT+CGG | - | Chr2:5965174-5965193 | MsG0280006766.01.T01:intron | 30.0% | |
| TTCTTATTGTGCAAAGATGA+GGG | - | Chr2:5965606-5965625 | MsG0280006766.01.T01:CDS | 30.0% | |
| TTTCTTATTGTGCAAAGATG+AGG | - | Chr2:5965605-5965624 | MsG0280006766.01.T01:CDS | 30.0% | |
| ! | AGCTTAAAGAGTGTAAGATA+AGG | - | Chr2:5965084-5965103 | MsG0280006766.01.T01:intron | 30.0% |
| ! | ATCTAGAAGAGTGTGAAAAA+CGG | - | Chr2:5963906-5963925 | MsG0280006766.01.T01:intron | 30.0% |
| ! | GTATTTCGGAGAAATTGTTT+TGG | + | Chr2:5964930-5964949 | None:intergenic | 30.0% |
| !! | AATGGTAATGGTAATGGAAT+TGG | + | Chr2:5963646-5963665 | None:intergenic | 30.0% |
| !! | TAAGGTAATGGTAATGGTAA+TGG | + | Chr2:5963652-5963671 | None:intergenic | 30.0% |
| !! | TTTCAACTGATTTGAGGAAT+AGG | - | Chr2:5964443-5964462 | MsG0280006766.01.T01:intron | 30.0% |
| !!! | CCGCTTTAGATTTTAAGATA+TGG | + | Chr2:5964528-5964547 | None:intergenic | 30.0% |
| !!! | TATTGTTTCACTTTTTCAGC+GGG | - | Chr2:5965010-5965029 | MsG0280006766.01.T01:intron | 30.0% |
| AAGAAGATGCACATTCTTGA+AGG | - | Chr2:5965657-5965676 | MsG0280006766.01.T01:exon | 35.0% | |
| CCAATCAAAAGCTAACTGAA+AGG | - | Chr2:5963876-5963895 | MsG0280006766.01.T01:intron | 35.0% | |
| GAATAGGTGTGGAAATACAT+AGG | - | Chr2:5964459-5964478 | MsG0280006766.01.T01:intron | 35.0% | |
| GACACAATAACTGTACAATG+AGG | - | Chr2:5964852-5964871 | MsG0280006766.01.T01:intron | 35.0% | |
| GAGAAGAGTAAAATTAGGTC+AGG | + | Chr2:5964007-5964026 | None:intergenic | 35.0% | |
| GGTTACTTCAAGAGTTGAAA+AGG | - | Chr2:5964573-5964592 | MsG0280006766.01.T01:intron | 35.0% | |
| TAATGAAAAGAGTCTGGAAG+AGG | - | Chr2:5964552-5964571 | MsG0280006766.01.T01:intron | 35.0% | |
| TTTAGGCTCCAAGACTAATT+TGG | - | Chr2:5964973-5964992 | MsG0280006766.01.T01:intron | 35.0% | |
| ! | AGTTGTTGGTTAGCTAAGAA+AGG | + | Chr2:5965171-5965190 | None:intergenic | 35.0% |
| ! | CTTGATTCTAGCTAAAAGTG+AGG | + | Chr2:5964179-5964198 | None:intergenic | 35.0% |
| ! | TTCTTTTCCATTCAGATGAG+TGG | - | Chr2:5965438-5965457 | MsG0280006766.01.T01:intron | 35.0% |
| !! | GTAATGGTAATGGAATTGGA+AGG | + | Chr2:5963642-5963661 | None:intergenic | 35.0% |
| !! | TAGCACTTTGTTGTTTGAGT+AGG | - | Chr2:5965053-5965072 | MsG0280006766.01.T01:intron | 35.0% |
| !! | TCACTGTGTTTGATTTTACC+TGG | + | Chr2:5964223-5964242 | None:intergenic | 35.0% |
| !! | TCTATTGATTCAGCTGAAAC+TGG | + | Chr2:5963711-5963730 | None:intergenic | 35.0% |
| !! | TCTGCACATTTTGGTCATAA+TGG | - | Chr2:5964643-5964662 | MsG0280006766.01.T01:intron | 35.0% |
| !!! | ATTGTTTCACTTTTTCAGCG+GGG | - | Chr2:5965011-5965030 | MsG0280006766.01.T01:intron | 35.0% |
| !!! | CCTTTCAGTTAGCTTTTGAT+TGG | + | Chr2:5963879-5963898 | None:intergenic | 35.0% |
| !!! | CTGGATTTTCAACTGATTTG+AGG | - | Chr2:5964437-5964456 | MsG0280006766.01.T01:intron | 35.0% |
| AACCTCAAAATCGCTCACTT+AGG | - | Chr2:5963759-5963778 | MsG0280006766.01.T01:CDS | 40.0% | |
| CTCTACTCTCTCTTCAATCA+AGG | - | Chr2:5963964-5963983 | MsG0280006766.01.T01:intron | 40.0% | |
| GGACGATAATGAAAAGAGTC+TGG | - | Chr2:5964546-5964565 | MsG0280006766.01.T01:intron | 40.0% | |
| TGAGACACACATTAAAGCTC+TGG | - | Chr2:5964346-5964365 | MsG0280006766.01.T01:intron | 40.0% | |
| ! | AGAAGAGTGTGAAAAACGGA+TGG | - | Chr2:5963910-5963929 | MsG0280006766.01.T01:intron | 40.0% |
| ! | ATGTGTTATTATGCTTGCGG+AGG | - | Chr2:5964251-5964270 | MsG0280006766.01.T01:intron | 40.0% |
| ! | TACCTAAGTGAGCGATTTTG+AGG | + | Chr2:5963764-5963783 | None:intergenic | 40.0% |
| !! | ACTGATTTGAGGAATAGGTG+TGG | - | Chr2:5964448-5964467 | MsG0280006766.01.T01:intron | 40.0% |
| !!! | GAGCGATTTTGAGGTTGATT+TGG | + | Chr2:5963755-5963774 | None:intergenic | 40.0% |
| !!! | TTGTTTCACTTTTTCAGCGG+GGG | - | Chr2:5965012-5965031 | MsG0280006766.01.T01:intron | 40.0% |
| AACCAACAACTAATCGGCAC+TGG | - | Chr2:5965180-5965199 | MsG0280006766.01.T01:intron | 45.0% | |
| CACAATGCCACTCATCTGAA+TGG | + | Chr2:5965448-5965467 | None:intergenic | 45.0% | |
| TCAAGTTCAGCATCTTGAGC+AGG | - | Chr2:5965482-5965501 | MsG0280006766.01.T01:intron | 45.0% | |
| ! | GACACACATTAAAGCTCTGG+AGG | - | Chr2:5964349-5964368 | MsG0280006766.01.T01:intron | 45.0% |
| ! | TGCAAAGATGAGGGCTCTAA+AGG | - | Chr2:5965615-5965634 | MsG0280006766.01.T01:CDS | 45.0% |
| !! | AACAACTAATCGGCACTGGT+GGG | - | Chr2:5965184-5965203 | MsG0280006766.01.T01:intron | 45.0% |
| !! | CATTAAAGCTCTGGAGGAAG+AGG | - | Chr2:5964355-5964374 | MsG0280006766.01.T01:intron | 45.0% |
| !! | GAGAAGCATCACATTCGCAA+TGG | - | Chr2:5963614-5963633 | MsG0280006766.01.T01:CDS | 45.0% |
| AACAGCAGAGTGCAAAGCAG+AGG | - | Chr2:5963583-5963602 | MsG0280006766.01.T01:CDS | 50.0% | |
| GTGGCATTGTGACTGAACAG+TGG | - | Chr2:5965457-5965476 | MsG0280006766.01.T01:intron | 50.0% | |
| ! | CAACAACTAATCGGCACTGG+TGG | - | Chr2:5965183-5965202 | MsG0280006766.01.T01:intron | 50.0% |
| !! | CACCAGTGCCGATTAGTTGT+TGG | + | Chr2:5965185-5965204 | None:intergenic | 50.0% |
| !! | TGAGGGCTCTAAAGGCTCAA+TGG | - | Chr2:5965623-5965642 | MsG0280006766.01.T01:CDS | 50.0% |
| !! | CTAATCGGCACTGGTGGGCA+TGG | - | Chr2:5965189-5965208 | MsG0280006766.01.T01:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 5963569 | 5965728 | 5963569 | ID=MsG0280006766.01;Name=MsG0280006766.01 |
| Chr2 | mRNA | 5963569 | 5965728 | 5963569 | ID=MsG0280006766.01.T01;Parent=MsG0280006766.01;Name=MsG0280006766.01.T01;_AED=0.48;_eAED=0.57;_QI=64|1|0.8|1|0.75|0.8|5|0|237 |
| Chr2 | exon | 5963569 | 5963844 | 5963569 | ID=MsG0280006766.01.T01:exon:2415;Parent=MsG0280006766.01.T01 |
| Chr2 | exon | 5964703 | 5964816 | 5964703 | ID=MsG0280006766.01.T01:exon:2414;Parent=MsG0280006766.01.T01 |
| Chr2 | exon | 5964921 | 5964968 | 5964921 | ID=MsG0280006766.01.T01:exon:2413;Parent=MsG0280006766.01.T01 |
| Chr2 | exon | 5965312 | 5965439 | 5965312 | ID=MsG0280006766.01.T01:exon:2412;Parent=MsG0280006766.01.T01 |
| Chr2 | exon | 5965517 | 5965728 | 5965517 | ID=MsG0280006766.01.T01:exon:2411;Parent=MsG0280006766.01.T01 |
| Chr2 | five_prime_UTR | 5965665 | 5965728 | 5965665 | ID=MsG0280006766.01.T01:five_prime_utr;Parent=MsG0280006766.01.T01 |
| Chr2 | CDS | 5965517 | 5965664 | 5965517 | ID=MsG0280006766.01.T01:cds;Parent=MsG0280006766.01.T01 |
| Chr2 | CDS | 5965312 | 5965439 | 5965312 | ID=MsG0280006766.01.T01:cds;Parent=MsG0280006766.01.T01 |
| Chr2 | CDS | 5964921 | 5964968 | 5964921 | ID=MsG0280006766.01.T01:cds;Parent=MsG0280006766.01.T01 |
| Chr2 | CDS | 5964703 | 5964816 | 5964703 | ID=MsG0280006766.01.T01:cds;Parent=MsG0280006766.01.T01 |
| Chr2 | CDS | 5963569 | 5963844 | 5963569 | ID=MsG0280006766.01.T01:cds;Parent=MsG0280006766.01.T01 |
| Gene Sequence |
| Protein sequence |
