Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038847.01.T01 | XP_013448954.1 | 91.071 | 56 | 5 | 0 | 12 | 67 | 211 | 266 | 5.31E-26 | 105 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038847.01.T01 | Q9LHT0 | 65.957 | 47 | 16 | 0 | 21 | 67 | 209 | 255 | 4.86E-17 | 75.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038847.01.T01 | A0A072U0P7 | 91.071 | 56 | 5 | 0 | 12 | 67 | 211 | 266 | 2.54e-26 | 105 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047899.01 | MsG0780038847.01 | 0.816986 | 4.167777e-52 | 2.998027e-49 |
| MsG0080048878.01 | MsG0780038847.01 | 0.809589 | 1.755778e-50 | 1.035080e-47 |
| MsG0080049068.01 | MsG0780038847.01 | 0.807871 | 4.090214e-50 | 2.303946e-47 |
| MsG0180000404.01 | MsG0780038847.01 | 0.822425 | 2.385895e-53 | 1.996359e-50 |
| MsG0180000782.01 | MsG0780038847.01 | 0.809666 | 1.690132e-50 | 9.984162e-48 |
| MsG0180003353.01 | MsG0780038847.01 | 0.800769 | 1.233720e-48 | 5.792805e-46 |
| MsG0180003741.01 | MsG0780038847.01 | 0.875027 | 4.257047e-68 | 1.958594e-64 |
| MsG0180004046.01 | MsG0780038847.01 | 0.824676 | 7.092573e-54 | 6.326480e-51 |
| MsG0180004497.01 | MsG0780038847.01 | 0.838982 | 2.080934e-57 | 2.833728e-54 |
| MsG0180005113.01 | MsG0780038847.01 | 0.802684 | 4.992660e-49 | 2.460997e-46 |
| MsG0180006031.01 | MsG0780038847.01 | 0.800989 | 1.112345e-48 | 5.252758e-46 |
| MsG0280006306.01 | MsG0780038847.01 | -0.808264 | 3.373216e-50 | 1.920031e-47 |
| MsG0280010569.01 | MsG0780038847.01 | 0.809102 | 2.233416e-50 | 1.299634e-47 |
| MsG0680030764.01 | MsG0780038847.01 | 0.811114 | 8.229873e-51 | 5.051039e-48 |
| MsG0680030784.01 | MsG0780038847.01 | 0.844103 | 9.303084e-59 | 1.486311e-55 |
| MsG0680030908.01 | MsG0780038847.01 | 0.814765 | 1.304163e-51 | 8.827854e-49 |
| MsG0680031010.01 | MsG0780038847.01 | 0.815227 | 1.030020e-51 | 7.060159e-49 |
| MsG0680031469.01 | MsG0780038847.01 | 0.806628 | 7.499078e-50 | 4.089895e-47 |
| MsG0680031621.01 | MsG0780038847.01 | 0.811056 | 8.472034e-51 | 5.191869e-48 |
| MsG0680031939.01 | MsG0780038847.01 | 0.820911 | 5.340403e-53 | 4.281631e-50 |
| MsG0680033377.01 | MsG0780038847.01 | 0.800632 | 1.315770e-48 | 6.156916e-46 |
| MsG0480018644.01 | MsG0780038847.01 | 0.808852 | 2.525956e-50 | 1.460003e-47 |
| MsG0480018850.01 | MsG0780038847.01 | 0.845823 | 3.193504e-59 | 5.389101e-56 |
| MsG0480019279.01 | MsG0780038847.01 | 0.803842 | 2.874697e-49 | 1.459715e-46 |
| MsG0480020315.01 | MsG0780038847.01 | 0.837093 | 6.371137e-57 | 8.188360e-54 |
| MsG0480021814.01 | MsG0780038847.01 | 0.803742 | 3.014759e-49 | 1.526886e-46 |
| MsG0480022355.01 | MsG0780038847.01 | 0.803674 | 3.114528e-49 | 1.574582e-46 |
| MsG0580024443.01 | MsG0780038847.01 | 0.800220 | 1.596135e-48 | 7.391104e-46 |
| MsG0580024619.01 | MsG0780038847.01 | 0.803524 | 3.346421e-49 | 1.685456e-46 |
| MsG0580024966.01 | MsG0780038847.01 | 0.804946 | 1.692532e-49 | 8.842400e-47 |
| MsG0580025502.01 | MsG0780038847.01 | 0.816018 | 6.864102e-52 | 4.808372e-49 |
| MsG0580025607.01 | MsG0780038847.01 | 0.849090 | 4.040383e-60 | 7.574207e-57 |
| MsG0580025668.01 | MsG0780038847.01 | 0.823001 | 1.752164e-53 | 1.490220e-50 |
| MsG0580025828.01 | MsG0780038847.01 | 0.814636 | 1.392692e-51 | 9.395129e-49 |
| MsG0380015849.01 | MsG0780038847.01 | -0.801874 | 7.328554e-49 | 3.538858e-46 |
| MsG0380016864.01 | MsG0780038847.01 | 0.811182 | 7.958045e-51 | 4.892872e-48 |
| MsG0380017087.01 | MsG0780038847.01 | 0.841020 | 6.118801e-58 | 8.873938e-55 |
| MsG0480018200.01 | MsG0780038847.01 | 0.820753 | 5.806822e-53 | 4.634960e-50 |
| MsG0580027655.01 | MsG0780038847.01 | 0.828445 | 8.954018e-55 | 8.902092e-52 |
| MsG0580027763.01 | MsG0780038847.01 | 0.807898 | 4.036599e-50 | 2.275320e-47 |
| MsG0580027826.01 | MsG0780038847.01 | 0.804889 | 1.738840e-49 | 9.071627e-47 |
| MsG0580029310.01 | MsG0780038847.01 | 0.838600 | 2.611717e-57 | 3.515645e-54 |
| MsG0580029529.01 | MsG0780038847.01 | 0.807992 | 3.855075e-50 | 2.178472e-47 |
| MsG0580029736.01 | MsG0780038847.01 | 0.805351 | 1.391944e-49 | 7.347653e-47 |
| MsG0680030328.01 | MsG0780038847.01 | 0.819422 | 1.171111e-52 | 9.008092e-50 |
| MsG0680030329.01 | MsG0780038847.01 | 0.803933 | 2.752059e-49 | 1.400767e-46 |
| MsG0280006937.01 | MsG0780038847.01 | 0.812494 | 4.121114e-51 | 2.624250e-48 |
| MsG0280008390.01 | MsG0780038847.01 | 0.815779 | 7.761782e-52 | 5.402010e-49 |
| MsG0280008418.01 | MsG0780038847.01 | 0.802932 | 4.437481e-49 | 2.201153e-46 |
| MsG0780035992.01 | MsG0780038847.01 | 0.808523 | 2.969742e-50 | 1.701853e-47 |
| MsG0780036486.01 | MsG0780038847.01 | 0.815676 | 8.181745e-52 | 5.678088e-49 |
| MsG0780037341.01 | MsG0780038847.01 | 0.813746 | 2.189276e-51 | 1.441647e-48 |
| MsG0780037395.01 | MsG0780038847.01 | 0.818984 | 1.473217e-52 | 1.119666e-49 |
| MsG0780038744.01 | MsG0780038847.01 | 0.805654 | 1.202605e-49 | 6.398006e-47 |
| MsG0780038846.01 | MsG0780038847.01 | 0.892623 | 1.338757e-74 | 1.233514e-70 |
| MsG0780038847.01 | MsG0780040430.01 | 0.833681 | 4.637253e-56 | 5.379142e-53 |
| MsG0780038847.01 | MsG0780040431.01 | 0.840107 | 1.060996e-57 | 1.496023e-54 |
| MsG0780038847.01 | MsG0780040846.01 | 0.811316 | 7.439486e-51 | 4.590127e-48 |
| MsG0780038847.01 | MsG0780041259.01 | 0.850643 | 1.487160e-60 | 2.932707e-57 |
| MsG0780038847.01 | MsG0780041698.01 | 0.817596 | 3.037647e-52 | 2.221756e-49 |
| MsG0780038847.01 | MsG0880041834.01 | 0.804702 | 1.903179e-49 | 9.879806e-47 |
| MsG0780038847.01 | MsG0880042958.01 | 0.808032 | 3.780250e-50 | 2.138430e-47 |
| MsG0780038847.01 | MsG0880044704.01 | 0.830686 | 2.553065e-55 | 2.709644e-52 |
| MsG0780038847.01 | MsG0880045558.01 | 0.803809 | 2.919662e-49 | 1.481239e-46 |
| MsG0780038847.01 | MsG0880046765.01 | 0.802184 | 6.329174e-49 | 3.080242e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038847.01.T01 | MTR_7g063360 | 91.071 | 56 | 5 | 0 | 12 | 67 | 211 | 266 | 6.44e-30 | 105 |
| MsG0780038847.01.T01 | MTR_7g063390 | 77.193 | 57 | 13 | 0 | 11 | 67 | 210 | 266 | 2.76e-25 | 94.0 |
| MsG0780038847.01.T01 | MTR_7g063270 | 71.429 | 49 | 14 | 0 | 18 | 66 | 167 | 215 | 2.64e-19 | 77.4 |
| MsG0780038847.01.T01 | MTR_7g063320 | 72.340 | 47 | 13 | 0 | 21 | 67 | 219 | 265 | 5.13e-19 | 77.4 |
| MsG0780038847.01.T01 | MTR_7g063270 | 71.429 | 49 | 14 | 0 | 18 | 66 | 216 | 264 | 7.09e-19 | 77.0 |
| MsG0780038847.01.T01 | MTR_7g063260 | 73.913 | 46 | 12 | 0 | 21 | 66 | 220 | 265 | 8.43e-18 | 74.3 |
| MsG0780038847.01.T01 | MTR_7g063330 | 72.340 | 47 | 13 | 0 | 20 | 66 | 217 | 263 | 3.61e-17 | 72.8 |
| MsG0780038847.01.T01 | MTR_3g068155 | 59.574 | 47 | 19 | 0 | 21 | 67 | 219 | 265 | 5.61e-15 | 67.0 |
| MsG0780038847.01.T01 | MTR_4g064887 | 56.000 | 50 | 22 | 0 | 18 | 67 | 212 | 261 | 1.82e-14 | 65.5 |
| MsG0780038847.01.T01 | MTR_3g068065 | 60.870 | 46 | 18 | 0 | 21 | 66 | 217 | 262 | 3.33e-14 | 64.7 |
| MsG0780038847.01.T01 | MTR_3g068070 | 57.447 | 47 | 20 | 0 | 21 | 67 | 215 | 261 | 5.59e-14 | 64.3 |
| MsG0780038847.01.T01 | MTR_3g068085 | 54.000 | 50 | 23 | 0 | 18 | 67 | 212 | 261 | 8.99e-14 | 63.5 |
| MsG0780038847.01.T01 | MTR_4g064883 | 55.102 | 49 | 22 | 0 | 19 | 67 | 212 | 260 | 1.02e-13 | 63.5 |
| MsG0780038847.01.T01 | MTR_3g068175 | 57.447 | 47 | 20 | 0 | 21 | 67 | 217 | 263 | 1.61e-13 | 62.8 |
| MsG0780038847.01.T01 | MTR_3g068175 | 57.447 | 47 | 20 | 0 | 21 | 67 | 221 | 267 | 1.66e-13 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038847.01.T01 | AT5G06060 | 65.957 | 47 | 16 | 0 | 21 | 67 | 209 | 255 | 4.96e-18 | 75.1 |
| MsG0780038847.01.T01 | AT2G29260 | 48.485 | 66 | 27 | 2 | 8 | 67 | 250 | 314 | 1.48e-15 | 68.9 |
| MsG0780038847.01.T01 | AT2G29320 | 60.870 | 46 | 18 | 0 | 22 | 67 | 197 | 242 | 4.54e-15 | 67.0 |
| MsG0780038847.01.T01 | AT2G29310 | 60.870 | 46 | 18 | 0 | 22 | 67 | 206 | 251 | 9.34e-15 | 66.2 |
| MsG0780038847.01.T01 | AT2G29320 | 60.870 | 46 | 18 | 0 | 22 | 67 | 215 | 260 | 1.16e-14 | 65.9 |
| MsG0780038847.01.T01 | AT2G30670 | 63.043 | 46 | 17 | 0 | 22 | 67 | 208 | 253 | 1.56e-14 | 65.5 |
| MsG0780038847.01.T01 | AT2G29370 | 50.769 | 65 | 27 | 1 | 8 | 67 | 198 | 262 | 2.64e-14 | 65.1 |
| MsG0780038847.01.T01 | AT2G29340 | 61.364 | 44 | 17 | 0 | 24 | 67 | 210 | 253 | 2.95e-14 | 64.7 |
| MsG0780038847.01.T01 | AT2G29340 | 61.364 | 44 | 17 | 0 | 24 | 67 | 210 | 253 | 4.53e-14 | 64.7 |
| MsG0780038847.01.T01 | AT2G29310 | 60.870 | 46 | 18 | 0 | 22 | 67 | 208 | 253 | 5.70e-14 | 63.9 |
| MsG0780038847.01.T01 | AT2G29330 | 60.870 | 46 | 18 | 0 | 22 | 67 | 208 | 253 | 1.16e-13 | 63.2 |
| MsG0780038847.01.T01 | AT1G07450 | 60.870 | 46 | 18 | 0 | 22 | 67 | 208 | 253 | 1.22e-13 | 63.2 |
| MsG0780038847.01.T01 | AT2G29290 | 65.000 | 40 | 14 | 0 | 28 | 67 | 197 | 236 | 1.58e-13 | 62.8 |
| MsG0780038847.01.T01 | AT1G07440 | 59.091 | 44 | 18 | 0 | 24 | 67 | 214 | 257 | 2.10e-13 | 62.8 |
| MsG0780038847.01.T01 | AT2G29300 | 60.000 | 45 | 18 | 0 | 22 | 66 | 209 | 253 | 2.42e-13 | 62.8 |
| MsG0780038847.01.T01 | AT2G29290 | 65.000 | 40 | 14 | 0 | 28 | 67 | 214 | 253 | 2.82e-13 | 62.4 |
| MsG0780038847.01.T01 | AT2G29360 | 58.696 | 46 | 19 | 0 | 22 | 67 | 217 | 262 | 2.89e-13 | 62.4 |
| MsG0780038847.01.T01 | AT2G29300 | 58.696 | 46 | 19 | 0 | 22 | 67 | 209 | 254 | 3.42e-13 | 62.0 |
| MsG0780038847.01.T01 | AT2G29350 | 56.522 | 46 | 20 | 0 | 22 | 67 | 177 | 222 | 7.83e-13 | 60.8 |
| MsG0780038847.01.T01 | AT2G29350 | 56.522 | 46 | 20 | 0 | 22 | 67 | 215 | 260 | 2.30e-12 | 59.7 |
| MsG0780038847.01.T01 | AT2G29150 | 60.000 | 40 | 16 | 0 | 28 | 67 | 222 | 261 | 8.79e-12 | 58.2 |
Find 20 sgRNAs with CRISPR-Local
Find 68 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTGTTATAGAAATTAAC+TGG | 0.353373 | 7:+53968947 | MsG0780038847.01.T01:intron |
| GGATAATGTTGTCGAGGATA+TGG | 0.392949 | 7:+53968976 | MsG0780038847.01.T01:CDS |
| GATACAGTGGCGGATCTCCT+TGG | 0.491297 | 7:-53968188 | None:intergenic |
| GCCAATGCTGATATATCCTT+AGG | 0.509059 | 7:-53969031 | None:intergenic |
| ACCTAAGGATATATCAGCAT+TGG | 0.530498 | 7:+53969030 | MsG0780038847.01.T01:CDS |
| TGGTCGGATTGGAGAACCTA+AGG | 0.554317 | 7:+53969015 | MsG0780038847.01.T01:CDS |
| CTAACACCTAGTGGTCGGAT+TGG | 0.555165 | 7:+53969004 | MsG0780038847.01.T01:CDS |
| CCAGTGATGTGTGATGCAGC+TGG | 0.556867 | 7:-53969070 | None:intergenic |
| GGTTCTCCAATCCGACCACT+AGG | 0.556909 | 7:-53969010 | None:intergenic |
| CCAGCTGCATCACACATCAC+TGG | 0.560488 | 7:+53969070 | MsG0780038847.01.T01:CDS |
| GGATCTCCTTGGAGACCCAT+AGG | 0.574980 | 7:-53968177 | None:intergenic |
| CAAATTATAGCTGCAGATGG+AGG | 0.585129 | 7:+53969094 | MsG0780038847.01.T01:CDS |
| GGACAAATTATAGCTGCAGA+TGG | 0.588163 | 7:+53969091 | MsG0780038847.01.T01:CDS |
| CACAATGGATAATGTTGTCG+AGG | 0.608245 | 7:+53968970 | MsG0780038847.01.T01:CDS |
| GTGGCACCTATGGGTCTCCA+AGG | 0.609564 | 7:+53968171 | None:intergenic |
| ATAGAAATTAACTGGCACAA+TGG | 0.645596 | 7:+53968955 | MsG0780038847.01.T01:intron |
| TGTCTCTAACACCTAGTGGT+CGG | 0.659290 | 7:+53968999 | MsG0780038847.01.T01:CDS |
| TGAGATCTCACGAGATACAG+TGG | 0.666039 | 7:-53968201 | None:intergenic |
| ATGGTGTCTCTAACACCTAG+TGG | 0.670463 | 7:+53968995 | MsG0780038847.01.T01:CDS |
| GATCTCACGAGATACAGTGG+CGG | 0.768719 | 7:-53968198 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAAAATAAAAACATCT+TGG | + | Chr7:53968764-53968783 | MsG0780038847.01.T01:intron | 10.0% |
| !! | TAACAACTTAATAACATTAA+GGG | - | Chr7:53968462-53968481 | None:intergenic | 15.0% |
| !! | TATACATACAAGTTTAAATT+AGG | - | Chr7:53968895-53968914 | None:intergenic | 15.0% |
| !! | TTAACAACTTAATAACATTA+AGG | - | Chr7:53968463-53968482 | None:intergenic | 15.0% |
| !! | AACAACTTAATAACATTAAG+GGG | - | Chr7:53968461-53968480 | None:intergenic | 20.0% |
| !! | ACAAGAGATTATAAACATTA+TGG | - | Chr7:53968934-53968953 | None:intergenic | 20.0% |
| !! | ACTATAAAAGGATAATTGAA+AGG | - | Chr7:53968333-53968352 | None:intergenic | 20.0% |
| !!! | GTTATTAAGTTGTTAACTAT+GGG | + | Chr7:53968467-53968486 | MsG0780038847.01.T01:intron | 20.0% |
| !!! | TGTTATTAAGTTGTTAACTA+TGG | + | Chr7:53968466-53968485 | MsG0780038847.01.T01:intron | 20.0% |
| ! | AAAGTTTAATATCAAGCAGA+AGG | - | Chr7:53968397-53968416 | None:intergenic | 25.0% |
| ! | AAGTTTAATATCAAGCAGAA+GGG | - | Chr7:53968396-53968415 | None:intergenic | 25.0% |
| ! | ACAACTTAATAACATTAAGG+GGG | - | Chr7:53968460-53968479 | None:intergenic | 25.0% |
| ! | ACTATGATACTTAATGTAGA+AGG | + | Chr7:53968245-53968264 | MsG0780038847.01.T01:intron | 25.0% |
| ! | AGAAAAACTTGAAGCTAAAT+TGG | + | Chr7:53968811-53968830 | MsG0780038847.01.T01:intron | 25.0% |
| ! | TATTCTGACACTACTATAAA+AGG | - | Chr7:53968345-53968364 | None:intergenic | 25.0% |
| ! | TGCTTGATATTAAACTTTGT+TGG | + | Chr7:53968399-53968418 | MsG0780038847.01.T01:intron | 25.0% |
| !! | CTCTTGTTATAGAAATTAAC+TGG | + | Chr7:53968947-53968966 | MsG0780038847.01.T01:intron | 25.0% |
| AGAATATCTAATGTGCTTCA+TGG | + | Chr7:53968359-53968378 | MsG0780038847.01.T01:intron | 30.0% | |
| ATAATTGAAAGGATCCTTCA+TGG | - | Chr7:53968322-53968341 | None:intergenic | 30.0% | |
| ATAGAAATTAACTGGCACAA+TGG | + | Chr7:53968955-53968974 | MsG0780038847.01.T01:intron | 30.0% | |
| TTCTCAAACTCAAGATAGAT+TGG | + | Chr7:53968856-53968875 | MsG0780038847.01.T01:intron | 30.0% | |
| ! | TTATGTCATACTCTTTGAGA+AGG | + | Chr7:53968552-53968571 | MsG0780038847.01.T01:intron | 30.0% |
| AATGCGCCAATATTTCACAA+TGG | - | Chr7:53968530-53968549 | None:intergenic | 35.0% | |
| ACCTAAGGATATATCAGCAT+TGG | + | Chr7:53969030-53969049 | MsG0780038847.01.T01:CDS | 35.0% | |
| AGCATATGCTAATAGAGCAT+AGG | - | Chr7:53968664-53968683 | None:intergenic | 35.0% | |
| ATGCTAATAGAGCATAGGAA+AGG | - | Chr7:53968659-53968678 | None:intergenic | 35.0% | |
| CTAGCTAAACTGAAAGCTAA+CGG | + | Chr7:53968594-53968613 | MsG0780038847.01.T01:intron | 35.0% | |
| GTAGGACCATTGTGAAATAT+TGG | + | Chr7:53968521-53968540 | MsG0780038847.01.T01:intron | 35.0% | |
| TAAATTGGCACCAGTCAAAA+CGG | + | Chr7:53968826-53968845 | MsG0780038847.01.T01:intron | 35.0% | |
| TATTTCACAATGGTCCTACA+AGG | - | Chr7:53968520-53968539 | None:intergenic | 35.0% | |
| ! | ACTAGACTAGTTCCTTATGA+AGG | - | Chr7:53968697-53968716 | None:intergenic | 35.0% |
| ! | AGCATAGGAAAGGCATAAAA+GGG | - | Chr7:53968649-53968668 | None:intergenic | 35.0% |
| !! | GAATGAAAATCCGTTTTGAC+TGG | - | Chr7:53968839-53968858 | None:intergenic | 35.0% |
| CAAATTATAGCTGCAGATGG+AGG | + | Chr7:53969094-53969113 | MsG0780038847.01.T01:CDS | 40.0% | |
| CACAATGGATAATGTTGTCG+AGG | + | Chr7:53968970-53968989 | MsG0780038847.01.T01:CDS | 40.0% | |
| GCCAATGCTGATATATCCTT+AGG | - | Chr7:53969034-53969053 | None:intergenic | 40.0% | |
| GCTCTATTAGCATATGCTCT+AGG | + | Chr7:53968666-53968685 | MsG0780038847.01.T01:intron | 40.0% | |
| GGACAAATTATAGCTGCAGA+TGG | + | Chr7:53969091-53969110 | MsG0780038847.01.T01:CDS | 40.0% | |
| GGATAATGTTGTCGAGGATA+TGG | + | Chr7:53968976-53968995 | MsG0780038847.01.T01:CDS | 40.0% | |
| GTCCTACAAGGTTAGCATAA+GGG | - | Chr7:53968508-53968527 | None:intergenic | 40.0% | |
| ! | GAGCATAGGAAAGGCATAAA+AGG | - | Chr7:53968650-53968669 | None:intergenic | 40.0% |
| ! | GCATAGGAAAGGCATAAAAG+GGG | - | Chr7:53968648-53968667 | None:intergenic | 40.0% |
| AAAAGCCGAGTTTGGAGGTT+TGG | + | Chr7:53968289-53968308 | MsG0780038847.01.T01:intron | 45.0% | |
| AACCCAAGAAAAGCCGAGTT+TGG | + | Chr7:53968281-53968300 | MsG0780038847.01.T01:intron | 45.0% | |
| ATGGTGTCTCTAACACCTAG+TGG | + | Chr7:53968995-53969014 | MsG0780038847.01.T01:CDS | 45.0% | |
| CACCCTTATGCTAACCTTGT+AGG | + | Chr7:53968503-53968522 | MsG0780038847.01.T01:intron | 45.0% | |
| CCTTACCAAACCTCCAAACT+CGG | - | Chr7:53968297-53968316 | None:intergenic | 45.0% | |
| CTACAAGGTTAGCATAAGGG+TGG | - | Chr7:53968505-53968524 | None:intergenic | 45.0% | |
| CTGTATCTCGTGAGATCTCA+TGG | + | Chr7:53968204-53968223 | MsG0780038847.01.T01:intron | 45.0% | |
| GGTCCTACAAGGTTAGCATA+AGG | - | Chr7:53968509-53968528 | None:intergenic | 45.0% | |
| TGAGATCTCACGAGATACAG+TGG | - | Chr7:53968204-53968223 | None:intergenic | 45.0% | |
| TGTCTCTAACACCTAGTGGT+CGG | + | Chr7:53968999-53969018 | MsG0780038847.01.T01:CDS | 45.0% | |
| ! | CTCCAAACTCGGCTTTTCTT+GGG | - | Chr7:53968286-53968305 | None:intergenic | 45.0% |
| ! | CTCTAGGAGTCTCCTTCATA+AGG | + | Chr7:53968682-53968701 | MsG0780038847.01.T01:intron | 45.0% |
| ! | GGTTTGGTAAGGAACCATGA+AGG | + | Chr7:53968305-53968324 | MsG0780038847.01.T01:intron | 45.0% |
| CCAAGAAAAGCCGAGTTTGG+AGG | + | Chr7:53968284-53968303 | MsG0780038847.01.T01:intron | 50.0% | |
| CGTGAGATCTCATGGCAACA+TGG | + | Chr7:53968212-53968231 | MsG0780038847.01.T01:intron | 50.0% | |
| CTAACACCTAGTGGTCGGAT+TGG | + | Chr7:53969004-53969023 | MsG0780038847.01.T01:CDS | 50.0% | |
| GAGATCTCATGGCAACATGG+TGG | + | Chr7:53968215-53968234 | MsG0780038847.01.T01:intron | 50.0% | |
| GATCTCACGAGATACAGTGG+CGG | - | Chr7:53968201-53968220 | None:intergenic | 50.0% | |
| ! | CCGAGTTTGGAGGTTTGGTA+AGG | + | Chr7:53968294-53968313 | MsG0780038847.01.T01:intron | 50.0% |
| ! | CCTCCAAACTCGGCTTTTCT+TGG | - | Chr7:53968287-53968306 | None:intergenic | 50.0% |
| ! | TGGTCGGATTGGAGAACCTA+AGG | + | Chr7:53969015-53969034 | MsG0780038847.01.T01:CDS | 50.0% |
| CCAGCTGCATCACACATCAC+TGG | + | Chr7:53969070-53969089 | MsG0780038847.01.T01:CDS | 55.0% | |
| CCAGTGATGTGTGATGCAGC+TGG | - | Chr7:53969073-53969092 | None:intergenic | 55.0% | |
| GGTTCTCCAATCCGACCACT+AGG | - | Chr7:53969013-53969032 | None:intergenic | 55.0% | |
| !! | GATACAGTGGCGGATCTCCT+TGG | - | Chr7:53968191-53968210 | None:intergenic | 55.0% |
| ! | CTCATGGCAACATGGTGGCG+TGG | + | Chr7:53968220-53968239 | MsG0780038847.01.T01:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 53968180 | 53969129 | 53968180 | ID=MsG0780038847.01;Name=MsG0780038847.01 |
| Chr7 | mRNA | 53968180 | 53969129 | 53968180 | ID=MsG0780038847.01.T01;Parent=MsG0780038847.01;Name=MsG0780038847.01.T01;_AED=0.50;_eAED=0.58;_QI=0|0|0|1|0|0|2|0|67 |
| Chr7 | exon | 53968180 | 53968212 | 53968180 | ID=MsG0780038847.01.T01:exon:7551;Parent=MsG0780038847.01.T01 |
| Chr7 | exon | 53968959 | 53969129 | 53968959 | ID=MsG0780038847.01.T01:exon:7552;Parent=MsG0780038847.01.T01 |
| Chr7 | CDS | 53968180 | 53968212 | 53968180 | ID=MsG0780038847.01.T01:cds;Parent=MsG0780038847.01.T01 |
| Chr7 | CDS | 53968959 | 53969129 | 53968959 | ID=MsG0780038847.01.T01:cds;Parent=MsG0780038847.01.T01 |
| Gene Sequence |
| Protein sequence |
