Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043028.01.T01 | AFK47795.1 | 82.418 | 91 | 4 | 1 | 1 | 79 | 68 | 158 | 1.26E-41 | 144 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043028.01.T01 | Q6EN42 | 72.527 | 91 | 13 | 1 | 1 | 79 | 84 | 174 | 1.56E-38 | 129 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043028.01.T01 | G8A086 | 82.418 | 91 | 4 | 1 | 1 | 79 | 68 | 158 | 6.04e-42 | 144 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048769.01 | MsG0880043028.01 | 0.828166 | 1.045321e-54 | 1.030853e-51 |
| MsG0180000332.01 | MsG0880043028.01 | 0.804903 | 1.727655e-49 | 9.016281e-47 |
| MsG0180000475.01 | MsG0880043028.01 | 0.806908 | 6.544821e-50 | 3.595506e-47 |
| MsG0180000703.01 | MsG0880043028.01 | 0.818645 | 1.759097e-52 | 1.324244e-49 |
| MsG0180000777.01 | MsG0880043028.01 | 0.803109 | 4.077555e-49 | 2.031766e-46 |
| MsG0180000836.01 | MsG0880043028.01 | 0.818038 | 2.414444e-52 | 1.787414e-49 |
| MsG0180001662.01 | MsG0880043028.01 | 0.805239 | 1.469260e-49 | 7.733498e-47 |
| MsG0180002071.01 | MsG0880043028.01 | 0.808679 | 2.750805e-50 | 1.582722e-47 |
| MsG0180002709.01 | MsG0880043028.01 | 0.803507 | 3.372663e-49 | 1.697925e-46 |
| MsG0180002952.01 | MsG0880043028.01 | 0.804374 | 2.227698e-49 | 1.146731e-46 |
| MsG0180002955.01 | MsG0880043028.01 | 0.803925 | 2.761977e-49 | 1.405555e-46 |
| MsG0180002975.01 | MsG0880043028.01 | 0.809733 | 1.635585e-50 | 9.678906e-48 |
| MsG0180003673.01 | MsG0880043028.01 | 0.801798 | 7.596436e-49 | 3.660949e-46 |
| MsG0180003807.01 | MsG0880043028.01 | 0.806482 | 8.050299e-50 | 4.374458e-47 |
| MsG0180004056.01 | MsG0880043028.01 | 0.819223 | 1.299885e-52 | 9.943144e-50 |
| MsG0180004372.01 | MsG0880043028.01 | 0.829216 | 5.828681e-55 | 5.927206e-52 |
| MsG0180004465.01 | MsG0880043028.01 | 0.808014 | 3.813151e-50 | 2.156035e-47 |
| MsG0180005179.01 | MsG0880043028.01 | 0.809349 | 1.976959e-50 | 1.158049e-47 |
| MsG0180005205.01 | MsG0880043028.01 | 0.806147 | 9.471438e-50 | 5.102882e-47 |
| MsG0180005228.01 | MsG0880043028.01 | 0.816361 | 5.752421e-52 | 4.067624e-49 |
| MsG0180005304.01 | MsG0880043028.01 | 0.804432 | 2.166614e-49 | 1.116910e-46 |
| MsG0180005445.01 | MsG0880043028.01 | 0.803051 | 4.191549e-49 | 2.085478e-46 |
| MsG0180005787.01 | MsG0880043028.01 | 0.816098 | 6.587246e-52 | 4.624666e-49 |
| MsG0180005990.01 | MsG0880043028.01 | 0.817391 | 3.378142e-52 | 2.457085e-49 |
| MsG0180006050.01 | MsG0880043028.01 | 0.842056 | 3.263933e-58 | 4.889408e-55 |
| MsG0180006098.01 | MsG0880043028.01 | 0.813852 | 2.074805e-51 | 1.370213e-48 |
| MsG0780040742.01 | MsG0880043028.01 | 0.825518 | 4.488578e-54 | 4.100491e-51 |
| MsG0780041261.01 | MsG0880043028.01 | 0.809517 | 1.819883e-50 | 1.070750e-47 |
| MsG0880041854.01 | MsG0880043028.01 | 0.800897 | 1.161734e-48 | 5.472972e-46 |
| MsG0880043028.01 | MsG0880043162.01 | 0.825972 | 3.501347e-54 | 3.240539e-51 |
| MsG0880043028.01 | MsG0880044409.01 | 0.802911 | 4.480044e-49 | 2.221235e-46 |
| MsG0880043028.01 | MsG0880044950.01 | 0.801779 | 7.664545e-49 | 3.691938e-46 |
| MsG0880043028.01 | MsG0880047745.01 | 0.826877 | 2.131809e-54 | 2.024542e-51 |
| MsG0280010595.01 | MsG0880043028.01 | 0.810071 | 1.383065e-50 | 8.257126e-48 |
| MsG0280010599.01 | MsG0880043028.01 | 0.832462 | 9.323498e-56 | 1.042850e-52 |
| MsG0280010976.01 | MsG0880043028.01 | 0.812190 | 4.803229e-51 | 3.033679e-48 |
| MsG0380011531.01 | MsG0880043028.01 | 0.806324 | 8.695072e-50 | 4.705733e-47 |
| MsG0380011537.01 | MsG0880043028.01 | 0.836041 | 1.180151e-56 | 1.469600e-53 |
| MsG0380013176.01 | MsG0880043028.01 | 0.802913 | 4.476557e-49 | 2.219587e-46 |
| MsG0380013363.01 | MsG0880043028.01 | 0.801651 | 8.143307e-49 | 3.909810e-46 |
| MsG0380014177.01 | MsG0880043028.01 | 0.802297 | 5.998745e-49 | 2.928075e-46 |
| MsG0680031301.01 | MsG0880043028.01 | 0.805412 | 1.351960e-49 | 7.147756e-47 |
| MsG0680031815.01 | MsG0880043028.01 | 0.802798 | 4.727789e-49 | 2.337355e-46 |
| MsG0680031964.01 | MsG0880043028.01 | 0.812124 | 4.964717e-51 | 3.129988e-48 |
| MsG0480020447.01 | MsG0880043028.01 | 0.806472 | 8.090752e-50 | 4.395344e-47 |
| MsG0480021204.01 | MsG0880043028.01 | 0.809291 | 2.034723e-50 | 1.190006e-47 |
| MsG0480021724.01 | MsG0880043028.01 | 0.829022 | 6.494353e-55 | 6.565486e-52 |
| MsG0480021998.01 | MsG0880043028.01 | 0.806812 | 6.858450e-50 | 3.758576e-47 |
| MsG0480022169.01 | MsG0880043028.01 | 0.821128 | 4.759946e-53 | 3.839345e-50 |
| MsG0480022261.01 | MsG0880043028.01 | 0.801843 | 7.435314e-49 | 3.587508e-46 |
| MsG0480022318.01 | MsG0880043028.01 | 0.803549 | 3.306391e-49 | 1.666372e-46 |
| MsG0480022552.01 | MsG0880043028.01 | 0.813457 | 2.535594e-51 | 1.656789e-48 |
| MsG0480022786.01 | MsG0880043028.01 | 0.803913 | 2.778346e-49 | 1.413431e-46 |
| MsG0480023638.01 | MsG0880043028.01 | 0.811326 | 7.405632e-51 | 4.570260e-48 |
| MsG0480023835.01 | MsG0880043028.01 | 0.807767 | 4.303184e-50 | 2.417383e-47 |
| MsG0580024781.01 | MsG0880043028.01 | 0.800492 | 1.405317e-48 | 6.552462e-46 |
| MsG0580025758.01 | MsG0880043028.01 | 0.811489 | 6.823455e-51 | 4.229609e-48 |
| MsG0580025922.01 | MsG0880043028.01 | 0.816371 | 5.723255e-52 | 4.048069e-49 |
| MsG0380015220.01 | MsG0880043028.01 | 0.801745 | 7.790823e-49 | 3.749412e-46 |
| MsG0380015436.01 | MsG0880043028.01 | 0.811611 | 6.421425e-51 | 3.992892e-48 |
| MsG0380016133.01 | MsG0880043028.01 | 0.822993 | 1.759158e-53 | 1.495836e-50 |
| MsG0380016209.01 | MsG0880043028.01 | 0.830844 | 2.335384e-55 | 2.490155e-52 |
| MsG0380016923.01 | MsG0880043028.01 | 0.815082 | 1.109177e-51 | 7.572813e-49 |
| MsG0380017452.01 | MsG0880043028.01 | 0.808965 | 2.389544e-50 | 1.385311e-47 |
| MsG0380017528.01 | MsG0880043028.01 | 0.805806 | 1.117392e-49 | 5.967889e-47 |
| MsG0580026086.01 | MsG0880043028.01 | 0.813952 | 1.972699e-51 | 1.306295e-48 |
| MsG0580026340.01 | MsG0880043028.01 | 0.805268 | 1.448865e-49 | 7.631674e-47 |
| MsG0580026664.01 | MsG0880043028.01 | 0.807281 | 5.456928e-50 | 3.027131e-47 |
| MsG0580029647.01 | MsG0880043028.01 | 0.841229 | 5.392296e-58 | 7.871117e-55 |
| MsG0580029651.01 | MsG0880043028.01 | 0.811040 | 8.540156e-51 | 5.231451e-48 |
| MsG0280006461.01 | MsG0880043028.01 | 0.841074 | 5.925086e-58 | 8.606419e-55 |
| MsG0280007153.01 | MsG0880043028.01 | 0.807201 | 5.675079e-50 | 3.141507e-47 |
| MsG0280007564.01 | MsG0880043028.01 | 0.818745 | 1.670073e-52 | 1.260720e-49 |
| MsG0280008363.01 | MsG0880043028.01 | 0.813166 | 2.937219e-51 | 1.903819e-48 |
| MsG0280008765.01 | MsG0880043028.01 | 0.834628 | 2.684910e-56 | 3.204352e-53 |
| MsG0280010158.01 | MsG0880043028.01 | 0.827431 | 1.570636e-54 | 1.516037e-51 |
| MsG0280010184.01 | MsG0880043028.01 | 0.801423 | 9.069260e-49 | 4.329418e-46 |
| MsG0280010517.01 | MsG0880043028.01 | 0.803106 | 4.084324e-49 | 2.034923e-46 |
| MsG0280010531.01 | MsG0880043028.01 | 0.812831 | 3.478479e-51 | 2.234468e-48 |
| MsG0780036183.01 | MsG0880043028.01 | 0.807610 | 4.647679e-50 | 2.600163e-47 |
| MsG0780036288.01 | MsG0880043028.01 | 0.813840 | 2.088107e-51 | 1.378540e-48 |
| MsG0780036810.01 | MsG0880043028.01 | 0.805327 | 1.408088e-49 | 7.428457e-47 |
| MsG0780038636.01 | MsG0880043028.01 | 0.808230 | 3.430622e-50 | 1.950873e-47 |
| MsG0780039143.01 | MsG0880043028.01 | 0.818446 | 1.951742e-52 | 1.461463e-49 |
| MsG0780039443.01 | MsG0880043028.01 | 0.809971 | 1.453246e-50 | 8.653676e-48 |
| MsG0780039587.01 | MsG0880043028.01 | 0.814269 | 1.678759e-51 | 1.121319e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043028.01.T01 | MTR_8g027805 | 82.418 | 91 | 4 | 1 | 1 | 79 | 68 | 158 | 1.53e-45 | 144 |
| MsG0880043028.01.T01 | MTR_3g090980 | 68.132 | 91 | 17 | 1 | 1 | 79 | 71 | 161 | 2.85e-37 | 124 |
| MsG0880043028.01.T01 | MTR_1g028380 | 64.835 | 91 | 20 | 1 | 1 | 79 | 69 | 159 | 3.51e-36 | 120 |
| MsG0880043028.01.T01 | MTR_3g071740 | 51.136 | 88 | 28 | 3 | 4 | 79 | 121 | 205 | 7.29e-20 | 80.1 |
| MsG0880043028.01.T01 | MTR_5g083270 | 50.000 | 88 | 28 | 3 | 3 | 77 | 100 | 184 | 6.06e-19 | 77.0 |
| MsG0880043028.01.T01 | MTR_1g016480 | 47.191 | 89 | 34 | 2 | 1 | 76 | 89 | 177 | 5.03e-18 | 74.7 |
| MsG0880043028.01.T01 | MTR_4g014460 | 44.186 | 86 | 36 | 1 | 3 | 76 | 102 | 187 | 1.48e-16 | 70.9 |
| MsG0880043028.01.T01 | MTR_5g030500 | 47.727 | 88 | 29 | 3 | 5 | 76 | 100 | 186 | 5.73e-15 | 66.6 |
| MsG0880043028.01.T01 | MTR_7g070050 | 50.000 | 94 | 30 | 3 | 3 | 79 | 66 | 159 | 2.03e-13 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043028.01.T01 | AT1G01360 | 71.910 | 89 | 13 | 1 | 3 | 79 | 73 | 161 | 1.06e-37 | 124 |
| MsG0880043028.01.T01 | AT4G01026 | 69.231 | 91 | 16 | 1 | 1 | 79 | 73 | 163 | 1.60e-37 | 124 |
| MsG0880043028.01.T01 | AT5G53160 | 64.835 | 91 | 20 | 1 | 1 | 79 | 69 | 159 | 1.91e-34 | 116 |
| MsG0880043028.01.T01 | AT4G27920 | 58.696 | 92 | 25 | 2 | 1 | 79 | 64 | 155 | 1.13e-28 | 101 |
| MsG0880043028.01.T01 | AT2G40330 | 50.588 | 85 | 28 | 2 | 7 | 77 | 106 | 190 | 7.22e-18 | 74.3 |
| MsG0880043028.01.T01 | AT2G26040 | 46.154 | 91 | 33 | 3 | 1 | 76 | 73 | 162 | 1.04e-15 | 68.2 |
| MsG0880043028.01.T01 | AT4G17870 | 45.882 | 85 | 34 | 1 | 4 | 76 | 72 | 156 | 1.76e-15 | 67.8 |
| MsG0880043028.01.T01 | AT5G05440 | 47.191 | 89 | 31 | 3 | 1 | 76 | 96 | 181 | 2.48e-15 | 67.4 |
| MsG0880043028.01.T01 | AT2G38310 | 51.190 | 84 | 26 | 2 | 6 | 77 | 96 | 176 | 5.52e-13 | 61.6 |
| MsG0880043028.01.T01 | AT1G73000 | 38.889 | 90 | 38 | 2 | 4 | 76 | 96 | 185 | 1.75e-12 | 60.1 |
Find 25 sgRNAs with CRISPR-Local
Find 50 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCGGATGGACTGTGATTA+TGG | 0.268603 | 8:-17895879 | None:intergenic |
| TCGTCCTTCGTGTTCCCTTC+AGG | 0.331294 | 8:-17895956 | None:intergenic |
| TGATGATGAGGACATATTCT+TGG | 0.357998 | 8:+17895337 | MsG0880043028.01.T01:CDS |
| CTCTTACACTTCCAATACTA+AGG | 0.431766 | 8:-17895256 | None:intergenic |
| AGAGAAGTGAATGTTAAATC+TGG | 0.439454 | 8:+17895275 | MsG0880043028.01.T01:CDS |
| CTCTCAGTACTTGTTGTAGC+TGG | 0.467121 | 8:-17895302 | None:intergenic |
| TTCCATAATCACAGTCCATC+CGG | 0.473119 | 8:+17895877 | MsG0880043028.01.T01:CDS |
| ATGCAAGGTGACCTTAGTAT+TGG | 0.474026 | 8:+17895245 | MsG0880043028.01.T01:CDS |
| GTCCATCCGGAGGTTATTGA+CGG | 0.527187 | 8:+17895890 | MsG0880043028.01.T01:CDS |
| GAGGTTATTGACGGAAGACC+AGG | 0.540051 | 8:+17895899 | MsG0880043028.01.T01:CDS |
| TACAACAAGTACTGAGAGGT+TGG | 0.543951 | 8:+17895307 | MsG0880043028.01.T01:CDS |
| AGGACGAAACTTGTTACTTG+TGG | 0.552324 | 8:+17895972 | MsG0880043028.01.T01:CDS |
| GATTCAATCACCATTGTACC+TGG | 0.555628 | 8:-17895917 | None:intergenic |
| TTCGTCGTGGACGTACCTGA+AGG | 0.560275 | 8:+17895941 | MsG0880043028.01.T01:CDS |
| GGTCTTCCGTCAATAACCTC+CGG | 0.572740 | 8:-17895896 | None:intergenic |
| ACGAAACTTGTTACTTGTGG+AGG | 0.583274 | 8:+17895975 | MsG0880043028.01.T01:CDS |
| TTCCGTCAATAACCTCCGGA+TGG | 0.584863 | 8:-17895892 | None:intergenic |
| ATTAGCAGGTGTATTATGCA+AGG | 0.592791 | 8:+17895230 | None:intergenic |
| TCGTCGTGGACGTACCTGAA+GGG | 0.600827 | 8:+17895942 | MsG0880043028.01.T01:CDS |
| GTTGGAACAACTTGATGATG+AGG | 0.610978 | 8:+17895325 | MsG0880043028.01.T01:CDS |
| TGACGGAAGACCAGGTACAA+TGG | 0.649685 | 8:+17895907 | MsG0880043028.01.T01:CDS |
| GGTGATTGAATCATTCGTCG+TGG | 0.681706 | 8:+17895928 | MsG0880043028.01.T01:CDS |
| CAGCTACAACAAGTACTGAG+AGG | 0.700141 | 8:+17895303 | MsG0880043028.01.T01:CDS |
| CATAATCACAGTCCATCCGG+AGG | 0.702023 | 8:+17895880 | MsG0880043028.01.T01:CDS |
| CGTACCTGAAGGGAACACGA+AGG | 0.780385 | 8:+17895952 | MsG0880043028.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAGAAAAATATTTTGAATT+TGG | - | Chr8:17895425-17895444 | None:intergenic | 10.0% |
| !!! | TTTTTACTTATTAATAGAAA+TGG | + | Chr8:17895721-17895740 | MsG0880043028.01.T01:intron | 10.0% |
| !! | AAATGAAGAAATTGTATATA+TGG | + | Chr8:17895481-17895500 | MsG0880043028.01.T01:intron | 15.0% |
| !!! | TTTTCCAAAAAAAAAATCAA+TGG | + | Chr8:17895615-17895634 | MsG0880043028.01.T01:intron | 15.0% |
| !! | CAAAATACCAAACTTAAAAT+TGG | - | Chr8:17895593-17895612 | None:intergenic | 20.0% |
| !!! | CAATTTTAAGTTTGGTATTT+TGG | + | Chr8:17895591-17895610 | MsG0880043028.01.T01:intron | 20.0% |
| !!! | TTTTGAATTTGGAAAAACAA+AGG | - | Chr8:17895414-17895433 | None:intergenic | 20.0% |
| ! | GAGAGATTATCTTATAATCT+TGG | + | Chr8:17895664-17895683 | MsG0880043028.01.T01:intron | 25.0% |
| ! | TCTTATGTTTATGTCTTCAT+AGG | + | Chr8:17895785-17895804 | MsG0880043028.01.T01:intron | 25.0% |
| ! | TTACTATGATTGAAATTCAG+CGG | + | Chr8:17895529-17895548 | MsG0880043028.01.T01:intron | 25.0% |
| !!! | GTGACCATTGATTTTTTTTT+TGG | - | Chr8:17895622-17895641 | None:intergenic | 25.0% |
| AAAAAATCAATGGTCACCAA+TGG | + | Chr8:17895625-17895644 | MsG0880043028.01.T01:intron | 30.0% | |
| AGAGAAGTGAATGTTAAATC+TGG | + | Chr8:17895275-17895294 | MsG0880043028.01.T01:CDS | 30.0% | |
| ATTCTTGGTATCAGGATTGT+TGG | + | Chr8:17895352-17895371 | MsG0880043028.01.T01:intron | 35.0% | |
| CTCTTACACTTCCAATACTA+AGG | - | Chr8:17895259-17895278 | None:intergenic | 35.0% | |
| ! | TGATGATGAGGACATATTCT+TGG | + | Chr8:17895337-17895356 | MsG0880043028.01.T01:CDS | 35.0% |
| !!! | AGACGGTCCAATTTTAAGTT+TGG | + | Chr8:17895583-17895602 | MsG0880043028.01.T01:intron | 35.0% |
| AAAATTGGACCGTCTGATCT+GGG | - | Chr8:17895578-17895597 | None:intergenic | 40.0% | |
| AGCATCAGTTGTAAGCTGAA+CGG | + | Chr8:17895815-17895834 | MsG0880043028.01.T01:intron | 40.0% | |
| ATCGTTAAACCCAGATCAGA+CGG | + | Chr8:17895566-17895585 | MsG0880043028.01.T01:intron | 40.0% | |
| ATGCAAGGTGACCTTAGTAT+TGG | + | Chr8:17895245-17895264 | MsG0880043028.01.T01:CDS | 40.0% | |
| CATTCACACATTCAGTCCAT+TGG | - | Chr8:17895644-17895663 | None:intergenic | 40.0% | |
| GAGGACATATTCTTGGTATC+AGG | + | Chr8:17895344-17895363 | MsG0880043028.01.T01:intron | 40.0% | |
| GATTCAATCACCATTGTACC+TGG | - | Chr8:17895920-17895939 | None:intergenic | 40.0% | |
| TAAAATTGGACCGTCTGATC+TGG | - | Chr8:17895579-17895598 | None:intergenic | 40.0% | |
| TTCCATAATCACAGTCCATC+CGG | + | Chr8:17895877-17895896 | MsG0880043028.01.T01:CDS | 40.0% | |
| !! | ACGAAACTTGTTACTTGTGG+AGG | + | Chr8:17895975-17895994 | MsG0880043028.01.T01:CDS | 40.0% |
| !! | AGGACGAAACTTGTTACTTG+TGG | + | Chr8:17895972-17895991 | MsG0880043028.01.T01:CDS | 40.0% |
| !! | CAATGGACTGAATGTGTGAA+TGG | + | Chr8:17895642-17895661 | MsG0880043028.01.T01:intron | 40.0% |
| !! | GTTGGAACAACTTGATGATG+AGG | + | Chr8:17895325-17895344 | MsG0880043028.01.T01:CDS | 40.0% |
| !! | TACAACAAGTACTGAGAGGT+TGG | + | Chr8:17895307-17895326 | MsG0880043028.01.T01:CDS | 40.0% |
| AAATTCAGCGGTCAGCACAT+CGG | + | Chr8:17895541-17895560 | MsG0880043028.01.T01:intron | 45.0% | |
| CTTGGTATCAGGATTGTTGG+TGG | + | Chr8:17895355-17895374 | MsG0880043028.01.T01:intron | 45.0% | |
| GGTGATTGAATCATTCGTCG+TGG | + | Chr8:17895928-17895947 | MsG0880043028.01.T01:CDS | 45.0% | |
| ! | TGGTGGTGATCATAGACTGA+GGG | + | Chr8:17895372-17895391 | MsG0880043028.01.T01:intron | 45.0% |
| !! | CAGCTACAACAAGTACTGAG+AGG | + | Chr8:17895303-17895322 | MsG0880043028.01.T01:CDS | 45.0% |
| !! | CTCTCAGTACTTGTTGTAGC+TGG | - | Chr8:17895305-17895324 | None:intergenic | 45.0% |
| !! | TTGGTGGTGATCATAGACTG+AGG | + | Chr8:17895371-17895390 | MsG0880043028.01.T01:intron | 45.0% |
| !! | TATTAATAAGTAAAAAAATA+TGG | - | Chr8:17895717-17895736 | None:intergenic | 5.0% |
| CATAATCACAGTCCATCCGG+AGG | + | Chr8:17895880-17895899 | MsG0880043028.01.T01:CDS | 50.0% | |
| GAGGTTATTGACGGAAGACC+AGG | + | Chr8:17895899-17895918 | MsG0880043028.01.T01:CDS | 50.0% | |
| GGTCTTCCGTCAATAACCTC+CGG | - | Chr8:17895899-17895918 | None:intergenic | 50.0% | |
| GTCCATCCGGAGGTTATTGA+CGG | + | Chr8:17895890-17895909 | MsG0880043028.01.T01:CDS | 50.0% | |
| TGACGGAAGACCAGGTACAA+TGG | + | Chr8:17895907-17895926 | MsG0880043028.01.T01:CDS | 50.0% | |
| TTCCGTCAATAACCTCCGGA+TGG | - | Chr8:17895895-17895914 | None:intergenic | 50.0% | |
| !! | CTCCGGATGGACTGTGATTA+TGG | - | Chr8:17895882-17895901 | None:intergenic | 50.0% |
| CGTACCTGAAGGGAACACGA+AGG | + | Chr8:17895952-17895971 | MsG0880043028.01.T01:CDS | 55.0% | |
| TCGTCCTTCGTGTTCCCTTC+AGG | - | Chr8:17895959-17895978 | None:intergenic | 55.0% | |
| TCGTCGTGGACGTACCTGAA+GGG | + | Chr8:17895942-17895961 | MsG0880043028.01.T01:CDS | 55.0% | |
| TTCGTCGTGGACGTACCTGA+AGG | + | Chr8:17895941-17895960 | MsG0880043028.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 17895245 | 17896003 | 17895245 | ID=MsG0880043028.01;Name=MsG0880043028.01 |
| Chr8 | mRNA | 17895245 | 17896003 | 17895245 | ID=MsG0880043028.01.T01;Parent=MsG0880043028.01;Name=MsG0880043028.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|2|0|82 |
| Chr8 | exon | 17895245 | 17895358 | 17895245 | ID=MsG0880043028.01.T01:exon:3531;Parent=MsG0880043028.01.T01 |
| Chr8 | exon | 17895869 | 17896003 | 17895869 | ID=MsG0880043028.01.T01:exon:3532;Parent=MsG0880043028.01.T01 |
| Chr8 | CDS | 17895245 | 17895358 | 17895245 | ID=MsG0880043028.01.T01:cds;Parent=MsG0880043028.01.T01 |
| Chr8 | CDS | 17895869 | 17896003 | 17895869 | ID=MsG0880043028.01.T01:cds;Parent=MsG0880043028.01.T01 |
| Gene Sequence |
| Protein sequence |
