AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022786.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022786.01.T01 MTR_4g096750 95.833 264 4 2 1 263 1 258 0.0 497
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 74 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATCCACCTTTATAAATTA+TGG 0.151250 4:+76658528 None:intergenic
CAAATACACAACATGATAAT+AGG 0.198843 4:+76658182 None:intergenic
TATAAATTATGGAGAATAAT+TGG 0.215867 4:+76658539 None:intergenic
TTCAGCTTTCAATTCGAAAA+TGG 0.257771 4:+76661203 None:intergenic
AAGGAAGACCAATCTCTTCT+TGG 0.263332 4:+76658269 None:intergenic
AGAGAAAATTCACCGGAATT+AGG 0.272623 4:-76661354 MsG0480022786.01.T01:five_prime_UTR
AGTTACAACATTGGTGTATC+TGG 0.305118 4:-76658428 MsG0480022786.01.T01:three_prime_UTR
TCGATGGTTCTGTGCTTCTT+TGG 0.305984 4:+76661243 None:intergenic
AAATACACAACATGATAATA+GGG 0.309506 4:+76658183 None:intergenic
TTATTCTCCATAATTTATAA+AGG 0.337969 4:-76658535 MsG0480022786.01.T01:three_prime_UTR
CTGTCTGCGTAGTTTAATTT+CGG 0.343209 4:+76658678 None:intergenic
GTTGGGCTTGGTCGAGCTGC+TGG 0.357156 4:-76660339 MsG0480022786.01.T01:CDS
GCGCGTTGATATTCGGCGTC+AGG 0.359015 4:+76661132 None:intergenic
AGCCTATCTTCGGAAGAAAT+TGG 0.365885 4:-76658620 MsG0480022786.01.T01:CDS
TTGTATGATAAGTTAGTTAA+GGG 0.401547 4:-76660546 MsG0480022786.01.T01:CDS
AACTTGAAACCTGTTGGGCT+TGG 0.402705 4:-76660351 MsG0480022786.01.T01:CDS
TTTATTGGAATAGGGACCTT+TGG 0.405644 4:+76661092 None:intergenic
GTTGTATGATAAGTTAGTTA+AGG 0.408759 4:-76660547 MsG0480022786.01.T01:CDS
CTGAGCACAAGCGCAATGTT+AGG 0.424493 4:-76660302 MsG0480022786.01.T01:intron
TGCCAATTTCTTCCGAAGAT+AGG 0.425699 4:+76658618 None:intergenic
TATGTACATGTATTTGAGAT+TGG 0.446518 4:-76658296 MsG0480022786.01.T01:three_prime_UTR
GCAGCTCGACCAAGCCCAAC+AGG 0.447516 4:+76660342 None:intergenic
TGTTTAACTTGAAACCTGTT+GGG 0.453678 4:-76660356 MsG0480022786.01.T01:CDS
GAATTAGGTTTAACGATGAC+GGG 0.453984 4:-76661339 MsG0480022786.01.T01:exon
AGAGTCGCGACGGAATCTTT+AGG 0.458235 4:-76661291 MsG0480022786.01.T01:CDS
CTGTTTAACTTGAAACCTGT+TGG 0.458401 4:-76660357 MsG0480022786.01.T01:CDS
GTCATCGTTAAACCTAATTC+CGG 0.465444 4:+76661342 None:intergenic
CGAAATTAAACTACGCAGAC+AGG 0.473262 4:-76658677 MsG0480022786.01.T01:CDS
AGCCAGTCGTGCGAGAGAAA+AGG 0.476028 4:-76658704 MsG0480022786.01.T01:CDS
GAGTTGAAAGCTATTAAAGA+TGG 0.477276 4:-76660606 MsG0480022786.01.T01:CDS
TTCTCCATAATTTATAAAGG+TGG 0.482341 4:-76658532 MsG0480022786.01.T01:three_prime_UTR
AACTTAAGCAAGCCTATCTT+CGG 0.486326 4:-76658630 MsG0480022786.01.T01:CDS
TTCTTGCAACACGTTGGGAT+TGG 0.494985 4:+76660437 None:intergenic
ACCGAGTTATTATTATTCAT+CGG 0.499078 4:-76658451 MsG0480022786.01.T01:three_prime_UTR
CGCGTTGATATTCGGCGTCA+GGG 0.499448 4:+76661133 None:intergenic
CTATGCTGCATTGGAGAAGA+AGG 0.501653 4:-76660574 MsG0480022786.01.T01:CDS
GCTGGTGATGGTGATGGTGA+TGG 0.502641 4:-76660399 MsG0480022786.01.T01:CDS
GAAAATGAACATGGTGGTGC+TGG 0.510141 4:-76660417 MsG0480022786.01.T01:CDS
AAGTCACTGAAATCAGTTGA+AGG 0.512826 4:+76658243 None:intergenic
GATGGTGATGGTGATGGTGA+TGG 0.515485 4:-76660393 MsG0480022786.01.T01:CDS
GGGAGAATTGTCTGATGAAG+AGG 0.516669 4:-76660526 MsG0480022786.01.T01:CDS
GTCAGGGCCTGATAATTCTC+TGG 0.517650 4:+76661149 None:intergenic
TTGGTAAACCAAGAAGAGAT+TGG 0.519620 4:-76658277 MsG0480022786.01.T01:three_prime_UTR
ATCAGTGAGCTATGCTGCAT+TGG 0.523981 4:-76660583 MsG0480022786.01.T01:CDS
GACGGGGACGGAGGCACCGT+CGG 0.533538 4:-76661322 MsG0480022786.01.T01:CDS
GAAGAAATTGGCAGAACTGA+AGG 0.534198 4:-76658608 MsG0480022786.01.T01:CDS
TGAAATCAGTTGAAGGTCAA+AGG 0.545364 4:+76658250 None:intergenic
GCAGAACTGAAGGCCACTGT+TGG 0.546526 4:-76658598 MsG0480022786.01.T01:CDS
AGGTTTAACGATGACGGGGA+CGG 0.548885 4:-76661334 MsG0480022786.01.T01:exon
GGTGGTGCTGGTGATGGTGA+TGG 0.554003 4:-76660405 MsG0480022786.01.T01:CDS
GCGACTCTCTTCTTCTCCGA+CGG 0.562550 4:+76661306 None:intergenic
CGAGCTGCTGGAGTAGTTGA+CGG 0.566239 4:-76660327 MsG0480022786.01.T01:CDS
GAAGAAGAGAGAAAATTCAC+CGG 0.574648 4:-76661361 MsG0480022786.01.T01:five_prime_UTR
GGAATTAGGTTTAACGATGA+CGG 0.574948 4:-76661340 MsG0480022786.01.T01:exon
GAACATGGTGGTGCTGGTGA+TGG 0.586272 4:-76660411 MsG0480022786.01.T01:CDS
CACAGAACCATCGAGGGTGT+TGG 0.591588 4:-76661234 MsG0480022786.01.T01:CDS
AATACACAACATGATAATAG+GGG 0.599341 4:+76658184 None:intergenic
CACAACATGATAATAGGGGA+TGG 0.622733 4:+76658188 None:intergenic
AGATGCACCAACACCCTCGA+TGG 0.631777 4:+76661227 None:intergenic
ATTCATCGGAGTTACAACAT+TGG 0.639519 4:-76658437 MsG0480022786.01.T01:three_prime_UTR
TCGCGACGGAATCTTTAGGA+TGG 0.640809 4:-76661287 MsG0480022786.01.T01:CDS
TCCGATGAATAATAATAACT+CGG 0.645707 4:+76658450 None:intergenic
CCACTGTTATCATGTTCGTG+TGG 0.646791 4:-76658216 MsG0480022786.01.T01:three_prime_UTR
GAGATCGCGTGCATCGACAC+CGG 0.655586 4:+76661065 None:intergenic
TTTAACGATGACGGGGACGG+AGG 0.656467 4:-76661331 MsG0480022786.01.T01:exon
GGAATCTTTAGGATGGCTAA+CGG 0.658502 4:-76661280 MsG0480022786.01.T01:CDS
AAGAAGCACAGAACCATCGA+GGG 0.672564 4:-76661240 MsG0480022786.01.T01:CDS
GGAGAAGAAGAGAGTCGCGA+CGG 0.681156 4:-76661301 MsG0480022786.01.T01:CDS
CCACACGAACATGATAACAG+TGG 0.692369 4:+76658216 None:intergenic
AAAGAAGCACAGAACCATCG+AGG 0.694787 4:-76661241 MsG0480022786.01.T01:CDS
AATTAGGTTTAACGATGACG+GGG 0.716816 4:-76661338 MsG0480022786.01.T01:exon
CTCAGATTCAGATCCAACAG+TGG 0.724935 4:+76658585 None:intergenic
GTGTTGCAAGAAAATGAACA+TGG 0.731258 4:-76660426 MsG0480022786.01.T01:CDS
TTGCAAGAAAATGAACATGG+TGG 0.793243 4:-76660423 MsG0480022786.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTATTTTAATTGTTC+AGG - Chr4:76658528-76658547 MsG0480022786.01.T01:three_prime_UTR 10.0%
!! AAAAAAAAAAAACTCTTTCT+AGG - Chr4:76660538-76660557 MsG0480022786.01.T01:CDS 15.0%
!! AAACATAAAGTGAAATAAAA+GGG + Chr4:76658502-76658521 None:intergenic 15.0%
!! TATAAATTATGGAGAATAAT+TGG + Chr4:76660989-76661008 None:intergenic 15.0%
!! TTATTCTCCATAATTTATAA+AGG - Chr4:76660990-76661009 MsG0480022786.01.T01:intron 15.0%
!!! TTTAAAAATTTTGATTTGCA+GGG - Chr4:76660785-76660804 MsG0480022786.01.T01:intron 15.0%
!!! TTTTAAAAATTTTGATTTGC+AGG - Chr4:76660784-76660803 MsG0480022786.01.T01:intron 15.0%
!! AAATACACAACATGATAATA+GGG + Chr4:76661345-76661364 None:intergenic 20.0%
!! AAGTAACAAGTAACAATAAT+AGG + Chr4:76660654-76660673 None:intergenic 20.0%
!! AATAATCTATGTGAATACAA+TGG - Chr4:76659938-76659957 MsG0480022786.01.T01:intron 20.0%
!! ACCAAAATATGCTTTATATA+TGG - Chr4:76659492-76659511 MsG0480022786.01.T01:intron 20.0%
!! CCAAAATATGCTTTATATAT+GGG - Chr4:76659493-76659512 MsG0480022786.01.T01:intron 20.0%
!! GAAACATAAAGTGAAATAAA+AGG + Chr4:76658503-76658522 None:intergenic 20.0%
!! TAAAGATATAAGTGTATGTT+TGG + Chr4:76658808-76658827 None:intergenic 20.0%
!! TAATGACTTACTATAAGTAA+CGG - Chr4:76660489-76660508 MsG0480022786.01.T01:CDS 20.0%
!! TTATTTACAAGAGAAAAAAG+AGG + Chr4:76661192-76661211 None:intergenic 20.0%
!! TTGTATGATAAGTTAGTTAA+GGG - Chr4:76658979-76658998 MsG0480022786.01.T01:intron 20.0%
!! TTTGAATATAAATTTGAGTC+TGG - Chr4:76658666-76658685 MsG0480022786.01.T01:CDS 20.0%
!!! AATTTGTGTTTGTTGATAAT+TGG - Chr4:76658843-76658862 MsG0480022786.01.T01:intron 20.0%
!!! ATTTGTGTTTGTTGATAATT+GGG - Chr4:76658844-76658863 MsG0480022786.01.T01:intron 20.0%
!!! CAATGTTTTTGTTCTATATA+TGG - Chr4:76659274-76659293 MsG0480022786.01.T01:intron 20.0%
!!! GCAAATATTTCCTTTAAAAA+AGG - Chr4:76661026-76661045 MsG0480022786.01.T01:intron 20.0%
!!! TGATTTTGTAAATTTGATTC+TGG - Chr4:76658610-76658629 MsG0480022786.01.T01:CDS 20.0%
!!! TTCTTTGAAAACTTAACTTT+TGG - Chr4:76659331-76659350 MsG0480022786.01.T01:intron 20.0%
!!! TTGTCTTTTACATTTAAGTA+GGG - Chr4:76660597-76660616 MsG0480022786.01.T01:CDS 20.0%
!!! TTTCTTTTTTGATTATCTGA+GGG + Chr4:76661143-76661162 None:intergenic 20.0%
!!! TTTGTCTTTTACATTTAAGT+AGG - Chr4:76660596-76660615 MsG0480022786.01.T01:CDS 20.0%
!!! TTTTTATCCATGATTATTCT+GGG - Chr4:76660717-76660736 MsG0480022786.01.T01:intron 20.0%
!!! TTTTTGTTCTATATATGGTT+AGG - Chr4:76659279-76659298 MsG0480022786.01.T01:intron 20.0%
!!! TTTTTTATCCATGATTATTC+TGG - Chr4:76660716-76660735 MsG0480022786.01.T01:intron 20.0%
! AATACACAACATGATAATAG+GGG + Chr4:76661344-76661363 None:intergenic 25.0%
! ACCGAGTTATTATTATTCAT+CGG - Chr4:76661074-76661093 MsG0480022786.01.T01:CDS 25.0%
! AGAATCAAAGCTCAAAATTT+AGG - Chr4:76658700-76658719 MsG0480022786.01.T01:CDS 25.0%
! CAAATACACAACATGATAAT+AGG + Chr4:76661346-76661365 None:intergenic 25.0%
! CAACAAACACAAATTCAATT+AGG + Chr4:76658838-76658857 None:intergenic 25.0%
! CTATCCACCTTTATAAATTA+TGG + Chr4:76661000-76661019 None:intergenic 25.0%
! CTTAAATGTAAAAGACAAAC+AGG + Chr4:76660595-76660614 None:intergenic 25.0%
! CTTTGTATGAAATGTGATTT+CGG - Chr4:76659419-76659438 MsG0480022786.01.T01:intron 25.0%
! GTTGTATGATAAGTTAGTTA+AGG - Chr4:76658978-76658997 MsG0480022786.01.T01:intron 25.0%
! TACAGTGAGAAAAATTGATT+TGG - Chr4:76658580-76658599 MsG0480022786.01.T01:CDS 25.0%
! TACGTATTACAAGTAAAACT+TGG - Chr4:76659651-76659670 MsG0480022786.01.T01:intron 25.0%
! TCCGATGAATAATAATAACT+CGG + Chr4:76661078-76661097 None:intergenic 25.0%
! TTCTCCATAATTTATAAAGG+TGG - Chr4:76660993-76661012 MsG0480022786.01.T01:intron 25.0%
!! AAAATTTGACTTAATCCAGT+AGG + Chr4:76660399-76660418 None:intergenic 25.0%
!! ACTGGATTAAGTCAAATTTT+TGG - Chr4:76660399-76660418 MsG0480022786.01.T01:CDS 25.0%
!! CCCATATATAAAGCATATTT+TGG + Chr4:76659496-76659515 None:intergenic 25.0%
!! TATGTACATGTATTTGAGAT+TGG - Chr4:76661229-76661248 MsG0480022786.01.T01:CDS 25.0%
!!! CTTTCTTTTTTGATTATCTG+AGG + Chr4:76661144-76661163 None:intergenic 25.0%
!!! CTTTTAATTTTGGCTTTAGA+GGG - Chr4:76660358-76660377 MsG0480022786.01.T01:CDS 25.0%
!!! CTTTTGGATGATATTGATTT+TGG - Chr4:76659347-76659366 MsG0480022786.01.T01:intron 25.0%
!!! TCTTCTAGAGCTTTTAATTT+TGG - Chr4:76660348-76660367 MsG0480022786.01.T01:CDS 25.0%
!!! TGTGTTTGTTGTTATGATTA+GGG - Chr4:76658888-76658907 MsG0480022786.01.T01:intron 25.0%
!!! TGTTACTTGTTACTTTTTTC+CGG - Chr4:76660659-76660678 MsG0480022786.01.T01:intron 25.0%
!!! TTTTAATTTTGGCTTTAGAG+GGG - Chr4:76660359-76660378 MsG0480022786.01.T01:CDS 25.0%
AAAAACATCATCACTTCCAA+AGG - Chr4:76658417-76658436 MsG0480022786.01.T01:three_prime_UTR 30.0%
AAAAAGTCCAGAGAATTATC+AGG - Chr4:76658369-76658388 MsG0480022786.01.T01:three_prime_UTR 30.0%
AAGTGAAATAAAAGGGAAAC+AGG + Chr4:76658495-76658514 None:intergenic 30.0%
AATCACTTTACTTTCAACTC+AGG + Chr4:76658642-76658661 None:intergenic 30.0%
AGTATCCTTCTTGTTAGAAT+TGG - Chr4:76660275-76660294 MsG0480022786.01.T01:intron 30.0%
GAGTTGAAAGCTATTAAAGA+TGG - Chr4:76658919-76658938 MsG0480022786.01.T01:intron 30.0%
GTTCTATATATGGTTAGGAT+AGG - Chr4:76659284-76659303 MsG0480022786.01.T01:intron 30.0%
TAACTACTTGTGCTTAGTTT+GGG - Chr4:76660204-76660223 MsG0480022786.01.T01:intron 30.0%
TAAGAAAATGTTTGAGAGAG+TGG - Chr4:76659699-76659718 MsG0480022786.01.T01:intron 30.0%
TGTTTATCATATCCCATTTG+TGG + Chr4:76660140-76660159 None:intergenic 30.0%
TTAACTACTTGTGCTTAGTT+TGG - Chr4:76660203-76660222 MsG0480022786.01.T01:intron 30.0%
TTCAGCTTTCAATTCGAAAA+TGG + Chr4:76658325-76658344 None:intergenic 30.0%
TTTACTTTCAACTCAGGTTT+CGG + Chr4:76658636-76658655 None:intergenic 30.0%
! ATGATGATGATCAAGATTAC+AGG - Chr4:76659754-76659773 MsG0480022786.01.T01:intron 30.0%
! TAGTTTGGGAGTGTAAAATA+GGG - Chr4:76660218-76660237 MsG0480022786.01.T01:intron 30.0%
! TGATAATTCTCTGGACTTTT+TGG + Chr4:76658370-76658389 None:intergenic 30.0%
! TGATGATGATCAAGATTACA+GGG - Chr4:76659755-76659774 MsG0480022786.01.T01:intron 30.0%
! TTAGTTTGGGAGTGTAAAAT+AGG - Chr4:76660217-76660236 MsG0480022786.01.T01:intron 30.0%
! TTTCCTTTAAAAAAGGCATG+AGG - Chr4:76661033-76661052 MsG0480022786.01.T01:intron 30.0%
!! GTGTGTTTGTTGTTATGATT+AGG - Chr4:76658887-76658906 MsG0480022786.01.T01:intron 30.0%
!! TGTTTAACTTGAAACCTGTT+GGG - Chr4:76659169-76659188 MsG0480022786.01.T01:intron 30.0%
!! TTTGGAAGTGATGATGTTTT+TGG + Chr4:76658418-76658437 None:intergenic 30.0%
!!! GCTTTTAATTTTGGCTTTAG+AGG - Chr4:76660357-76660376 MsG0480022786.01.T01:CDS 30.0%
!!! GTTACTTGTTACTTTTTTCC+GGG - Chr4:76660660-76660679 MsG0480022786.01.T01:intron 30.0%
!!! TTACTTGTTACTTTTTTCCG+GGG - Chr4:76660661-76660680 MsG0480022786.01.T01:intron 30.0%
AACTTAAGCAAGCCTATCTT+CGG - Chr4:76660895-76660914 MsG0480022786.01.T01:intron 35.0%
AAGTAGGGAATGATGAAGAT+GGG - Chr4:76660612-76660631 MsG0480022786.01.T01:CDS 35.0%
AAGTCACTGAAATCAGTTGA+AGG + Chr4:76661285-76661304 None:intergenic 35.0%
AAGTCATTACCTACCTCAAT+AGG + Chr4:76660478-76660497 None:intergenic 35.0%
AATTAGGTTTAACGATGACG+GGG - Chr4:76658187-76658206 MsG0480022786.01.T01:three_prime_UTR 35.0%
AGAGAAAATTCACCGGAATT+AGG - Chr4:76658171-76658190 MsG0480022786.01.T01:three_prime_UTR 35.0%
AGTTACAACATTGGTGTATC+TGG - Chr4:76661097-76661116 MsG0480022786.01.T01:CDS 35.0%
ATAAAACACACACTCCTTCA+AGG + Chr4:76659389-76659408 None:intergenic 35.0%
ATATAGAAGTCCAGTGAGAT+TGG - Chr4:76659796-76659815 MsG0480022786.01.T01:intron 35.0%
ATGTGCCAATTCTAACAAGA+AGG + Chr4:76660283-76660302 None:intergenic 35.0%
ATTCATCGGAGTTACAACAT+TGG - Chr4:76661088-76661107 MsG0480022786.01.T01:CDS 35.0%
CCCTATTCCAATAAAAACTC+CGG - Chr4:76658441-76658460 MsG0480022786.01.T01:three_prime_UTR 35.0%
GAAGAAGAGAGAAAATTCAC+CGG - Chr4:76658164-76658183 MsG0480022786.01.T01:three_prime_UTR 35.0%
GAATTAGGTTTAACGATGAC+GGG - Chr4:76658186-76658205 MsG0480022786.01.T01:three_prime_UTR 35.0%
GCAATTACCCAGAATAATCA+TGG + Chr4:76660727-76660746 None:intergenic 35.0%
GGAATTAGGTTTAACGATGA+CGG - Chr4:76658185-76658204 MsG0480022786.01.T01:three_prime_UTR 35.0%
GTCATCGTTAAACCTAATTC+CGG + Chr4:76658186-76658205 None:intergenic 35.0%
GTGTTGCAAGAAAATGAACA+TGG - Chr4:76659099-76659118 MsG0480022786.01.T01:intron 35.0%
GTTCGAGGTAGAATAGATTA+TGG - Chr4:76658722-76658741 MsG0480022786.01.T01:CDS 35.0%
TAAGTAGGGAATGATGAAGA+TGG - Chr4:76660611-76660630 MsG0480022786.01.T01:CDS 35.0%
TATAAGTAACGGCTCTTTCT+AGG - Chr4:76660500-76660519 MsG0480022786.01.T01:CDS 35.0%
TATAGTGCTGTAACCTATTG+AGG - Chr4:76660462-76660481 MsG0480022786.01.T01:CDS 35.0%
TCGTTAAATTTGTGAGTCTG+TGG - Chr4:76660748-76660767 MsG0480022786.01.T01:intron 35.0%
TCTTGTTAGAATTGGCACAT+AGG - Chr4:76660283-76660302 MsG0480022786.01.T01:intron 35.0%
TGAAATCAGTTGAAGGTCAA+AGG + Chr4:76661278-76661297 None:intergenic 35.0%
TGTAAAATAGGGCTGAGTTA+AGG - Chr4:76660229-76660248 MsG0480022786.01.T01:intron 35.0%
TGTATGAAATGTGATTTCGG+AGG - Chr4:76659422-76659441 MsG0480022786.01.T01:intron 35.0%
TGTTAAAATTGCTCCGAAAG+TGG - Chr4:76658780-76658799 MsG0480022786.01.T01:intron 35.0%
TTCTAACCTTGAAGCTTGAA+AGG + Chr4:76659545-76659564 None:intergenic 35.0%
TTGCAAGAAAATGAACATGG+TGG - Chr4:76659102-76659121 MsG0480022786.01.T01:intron 35.0%
TTGGTAAACCAAGAAGAGAT+TGG - Chr4:76661248-76661267 MsG0480022786.01.T01:CDS 35.0%
TTTATTGGAATAGGGACCTT+TGG + Chr4:76658436-76658455 None:intergenic 35.0%
! AAGCTCAAAATTTAGGTTCG+AGG - Chr4:76658707-76658726 MsG0480022786.01.T01:CDS 35.0%
! ACCGGAGTTTTTATTGGAAT+AGG + Chr4:76658445-76658464 None:intergenic 35.0%
! CCGGAGTTTTTATTGGAATA+GGG + Chr4:76658444-76658463 None:intergenic 35.0%
! CTCTAGAAGAGTGAATAAAC+GGG + Chr4:76660338-76660357 None:intergenic 35.0%
! CTGTCTGCGTAGTTTAATTT+CGG + Chr4:76660850-76660869 None:intergenic 35.0%
! GAAGTGTCAAAATTTCTGTG+AGG - Chr4:76659562-76659581 MsG0480022786.01.T01:intron 35.0%
! TCATTTTCTTGCAACACGTT+GGG + Chr4:76659096-76659115 None:intergenic 35.0%
! TGTATGTTTGGTTCCACTTT+CGG + Chr4:76658796-76658815 None:intergenic 35.0%
! TTCATTTTCTTGCAACACGT+TGG + Chr4:76659097-76659116 None:intergenic 35.0%
! TTTGCTACTTCTGTTAACCT+AGG + Chr4:76659880-76659899 None:intergenic 35.0%
!! ACTTTCGGAGCAATTTTAAC+AGG + Chr4:76658781-76658800 None:intergenic 35.0%
!! AGGAGTGTGTGTTTTATGTT+TGG - Chr4:76659392-76659411 MsG0480022786.01.T01:intron 35.0%
!! AGTGATAGCAATGTTTTGAG+AGG - Chr4:76659516-76659535 MsG0480022786.01.T01:intron 35.0%
!! CTGTTTAACTTGAAACCTGT+TGG - Chr4:76659168-76659187 MsG0480022786.01.T01:intron 35.0%
!! GCTCTAGAAGAGTGAATAAA+CGG + Chr4:76660339-76660358 None:intergenic 35.0%
!!! ACTCCTCATGCCTTTTTTAA+AGG + Chr4:76661039-76661058 None:intergenic 35.0%
!!! TACTTGTTACTTTTTTCCGG+GGG - Chr4:76660662-76660681 MsG0480022786.01.T01:intron 35.0%
AAGGAAGACCAATCTCTTCT+TGG + Chr4:76661259-76661278 None:intergenic 40.0%
AATACCCACCTCGTAATTCA+AGG - Chr4:76660012-76660031 MsG0480022786.01.T01:intron 40.0%
AGCCTATCTTCGGAAGAAAT+TGG - Chr4:76660905-76660924 MsG0480022786.01.T01:intron 40.0%
AGGTTTCCTTTCAAGCTTCA+AGG - Chr4:76659536-76659555 MsG0480022786.01.T01:intron 40.0%
AGTAGGGAATGATGAAGATG+GGG - Chr4:76660613-76660632 MsG0480022786.01.T01:CDS 40.0%
ATACCAGTTGCAAGAATCCT+AGG - Chr4:76659860-76659879 MsG0480022786.01.T01:intron 40.0%
ATGCGGAAGCTAAATCTGTT+TGG - Chr4:76659598-76659617 MsG0480022786.01.T01:intron 40.0%
CAAAAAAGTCCAACACTTCC+GGG - Chr4:76660049-76660068 MsG0480022786.01.T01:intron 40.0%
CACAACATGATAATAGGGGA+TGG + Chr4:76661340-76661359 None:intergenic 40.0%
CGAAATTAAACTACGCAGAC+AGG - Chr4:76660848-76660867 MsG0480022786.01.T01:intron 40.0%
CGAGGTAGAATAGATTATGG+AGG - Chr4:76658725-76658744 MsG0480022786.01.T01:intron 40.0%
GAAGAAATTGGCAGAACTGA+AGG - Chr4:76660917-76660936 MsG0480022786.01.T01:intron 40.0%
GCAAAAAAGTCCAACACTTC+CGG - Chr4:76660048-76660067 MsG0480022786.01.T01:intron 40.0%
GCTACACATAGAGAAAATCC+CGG + Chr4:76660070-76660089 None:intergenic 40.0%
TAACCTAGGATTCTTGCAAC+TGG + Chr4:76659866-76659885 None:intergenic 40.0%
TATCCCATTTGTGGATCAAC+TGG + Chr4:76660131-76660150 None:intergenic 40.0%
TCGGAGGAATTAATGTCGTT+TGG - Chr4:76659438-76659457 MsG0480022786.01.T01:intron 40.0%
TGCCAATTTCTTCCGAAGAT+AGG + Chr4:76660910-76660929 None:intergenic 40.0%
TTGTGAGTCTGTGGCTAATT+TGG - Chr4:76660757-76660776 MsG0480022786.01.T01:intron 40.0%
! AAAACTTGGTGACAGAGTGA+GGG - Chr4:76659665-76659684 MsG0480022786.01.T01:intron 40.0%
! ATCGACACCGGAGTTTTTAT+TGG + Chr4:76658451-76658470 None:intergenic 40.0%
! TAAAACTTGGTGACAGAGTG+AGG - Chr4:76659664-76659683 MsG0480022786.01.T01:intron 40.0%
!! CGGAGCAATTTTAACAGGTT+TGG + Chr4:76658776-76658795 None:intergenic 40.0%
!! GGAATCTTTAGGATGGCTAA+CGG - Chr4:76658245-76658264 MsG0480022786.01.T01:three_prime_UTR 40.0%
!!! AGTGTTGGACTTTTTTGCCA+TGG + Chr4:76660046-76660065 None:intergenic 40.0%
!!! GTTTTTGGCGCGTTGATATT+CGG + Chr4:76658403-76658422 None:intergenic 40.0%
AACTTGAAACCTGTTGGGCT+TGG - Chr4:76659174-76659193 MsG0480022786.01.T01:intron 45.0%
AATTCAAGGTGGACACACCA+TGG - Chr4:76660026-76660045 MsG0480022786.01.T01:intron 45.0%
AGCAAGTCTCTGAGTGGATA+AGG - Chr4:76660087-76660106 MsG0480022786.01.T01:intron 45.0%
ATCAGTGAGCTATGCTGCAT+TGG - Chr4:76658942-76658961 MsG0480022786.01.T01:intron 45.0%
ATGTGTAGCAAGTCTCTGAG+TGG - Chr4:76660081-76660100 MsG0480022786.01.T01:intron 45.0%
CAGCCAGTTGATCCACAAAT+GGG - Chr4:76660125-76660144 MsG0480022786.01.T01:intron 45.0%
CCACACGAACATGATAACAG+TGG + Chr4:76661312-76661331 None:intergenic 45.0%
CCACTGTTATCATGTTCGTG+TGG - Chr4:76661309-76661328 MsG0480022786.01.T01:CDS 45.0%
CTATGCTGCATTGGAGAAGA+AGG - Chr4:76658951-76658970 MsG0480022786.01.T01:intron 45.0%
CTCAGATTCAGATCCAACAG+TGG + Chr4:76660943-76660962 None:intergenic 45.0%
GGGAGAATTGTCTGATGAAG+AGG - Chr4:76658999-76659018 MsG0480022786.01.T01:intron 45.0%
GTCAGTTGTTGAATGCCTAC+TGG - Chr4:76660381-76660400 MsG0480022786.01.T01:CDS 45.0%
GTGCTGTAACCTATTGAGGT+AGG - Chr4:76660466-76660485 MsG0480022786.01.T01:CDS 45.0%
TCAGCCAGTTGATCCACAAA+TGG - Chr4:76660124-76660143 MsG0480022786.01.T01:intron 45.0%
TCCACCTTGAATTACGAGGT+GGG + Chr4:76660019-76660038 None:intergenic 45.0%
TGTGTCCACCTTGAATTACG+AGG + Chr4:76660023-76660042 None:intergenic 45.0%
TTCTTGCAACACGTTGGGAT+TGG + Chr4:76659091-76659110 None:intergenic 45.0%
! AAACTTGGTGACAGAGTGAG+GGG - Chr4:76659666-76659685 MsG0480022786.01.T01:intron 45.0%
! AAAGAAGCACAGAACCATCG+AGG - Chr4:76658284-76658303 MsG0480022786.01.T01:three_prime_UTR 45.0%
! AAAGTGCTTGTGAGCCTTGA+AGG - Chr4:76659372-76659391 MsG0480022786.01.T01:intron 45.0%
! AAGAAGCACAGAACCATCGA+GGG - Chr4:76658285-76658304 MsG0480022786.01.T01:three_prime_UTR 45.0%
! AGAGAAAATCCCGGAAGTGT+TGG + Chr4:76660061-76660080 None:intergenic 45.0%
! GAAAATGAACATGGTGGTGC+TGG - Chr4:76659108-76659127 MsG0480022786.01.T01:intron 45.0%
! TCGATGGTTCTGTGCTTCTT+TGG + Chr4:76658285-76658304 None:intergenic 45.0%
!!! TGTTACTTTTTTCCGGGGGT+GGG - Chr4:76660666-76660685 MsG0480022786.01.T01:intron 45.0%
!!! TTGTTACTTTTTTCCGGGGG+TGG - Chr4:76660665-76660684 MsG0480022786.01.T01:intron 45.0%
ACCCACCTCGTAATTCAAGG+TGG - Chr4:76660015-76660034 MsG0480022786.01.T01:intron 50.0%
AGAGTCGCGACGGAATCTTT+AGG - Chr4:76658234-76658253 MsG0480022786.01.T01:three_prime_UTR 50.0%
CTGAGCACAAGCGCAATGTT+AGG - Chr4:76659223-76659242 MsG0480022786.01.T01:intron 50.0%
GAGGAGCTTGTGCTTCAATG+CGG - Chr4:76659581-76659600 MsG0480022786.01.T01:intron 50.0%
GGAATGATGAAGATGGGGCT+GGG - Chr4:76660618-76660637 MsG0480022786.01.T01:CDS 50.0%
GTCAGGGCCTGATAATTCTC+TGG + Chr4:76658379-76658398 None:intergenic 50.0%
GTCCACCTTGAATTACGAGG+TGG + Chr4:76660020-76660039 None:intergenic 50.0%
! TCGCGACGGAATCTTTAGGA+TGG - Chr4:76658238-76658257 MsG0480022786.01.T01:three_prime_UTR 50.0%
!! AGGTTTAACGATGACGGGGA+CGG - Chr4:76658191-76658210 MsG0480022786.01.T01:three_prime_UTR 50.0%
!! GATGGTGATGGTGATGGTGA+TGG - Chr4:76659132-76659151 MsG0480022786.01.T01:intron 50.0%
AGATGCACCAACACCCTCGA+TGG + Chr4:76658301-76658320 None:intergenic 55.0%
AGCCAGTCGTGCGAGAGAAA+AGG - Chr4:76660821-76660840 MsG0480022786.01.T01:intron 55.0%
CGAGCTGCTGGAGTAGTTGA+CGG - Chr4:76659198-76659217 MsG0480022786.01.T01:intron 55.0%
GAAGCAGCGACCAATCTCAC+TGG + Chr4:76659809-76659828 None:intergenic 55.0%
GCAGAACTGAAGGCCACTGT+TGG - Chr4:76660927-76660946 MsG0480022786.01.T01:intron 55.0%
GCGACTCTCTTCTTCTCCGA+CGG + Chr4:76658222-76658241 None:intergenic 55.0%
GGAGAAGAAGAGAGTCGCGA+CGG - Chr4:76658224-76658243 MsG0480022786.01.T01:three_prime_UTR 55.0%
GGGAATGATGAAGATGGGGC+TGG - Chr4:76660617-76660636 MsG0480022786.01.T01:CDS 55.0%
! AGCCTTTTCTCTCGCACGAC+TGG + Chr4:76660826-76660845 None:intergenic 55.0%
! CACAGAACCATCGAGGGTGT+TGG - Chr4:76658291-76658310 MsG0480022786.01.T01:three_prime_UTR 55.0%
! CGCGTTGATATTCGGCGTCA+GGG + Chr4:76658395-76658414 None:intergenic 55.0%
! GGGTGGGAGCTTGAGGTTTT+TGG - Chr4:76660682-76660701 MsG0480022786.01.T01:intron 55.0%
!! GAACATGGTGGTGCTGGTGA+TGG - Chr4:76659114-76659133 MsG0480022786.01.T01:intron 55.0%
!! GCTGGTGATGGTGATGGTGA+TGG - Chr4:76659126-76659145 MsG0480022786.01.T01:intron 55.0%
!! TTTAACGATGACGGGGACGG+AGG - Chr4:76658194-76658213 MsG0480022786.01.T01:three_prime_UTR 55.0%
AAACCTCAAGCTCCCACCCC+CGG + Chr4:76660681-76660700 None:intergenic 60.0%
! GAGATCGCGTGCATCGACAC+CGG + Chr4:76658463-76658482 None:intergenic 60.0%
! GCGCGTTGATATTCGGCGTC+AGG + Chr4:76658396-76658415 None:intergenic 60.0%
!! GGTGGTGCTGGTGATGGTGA+TGG - Chr4:76659120-76659139 MsG0480022786.01.T01:intron 60.0%
GCAGCTCGACCAAGCCCAAC+AGG + Chr4:76659186-76659205 None:intergenic 65.0%
TTTCCGGGGGTGGGAGCTTG+AGG - Chr4:76660675-76660694 MsG0480022786.01.T01:intron 65.0%
! GTTGGGCTTGGTCGAGCTGC+TGG - Chr4:76659186-76659205 MsG0480022786.01.T01:intron 65.0%
!! GACGGGGACGGAGGCACCGT+CGG - Chr4:76658203-76658222 MsG0480022786.01.T01:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
Chr4 gene 76658146 76661401 76658146 ID=MsG0480022786.01;Name=MsG0480022786.01
Chr4 mRNA 76658146 76661401 76658146 ID=MsG0480022786.01.T01;Parent=MsG0480022786.01;Name=MsG0480022786.01.T01;_AED=0.33;_eAED=0.33;_QI=55|1|1|1|1|1|3|424|263
Chr4 exon 76658146 76658741 76658146 ID=MsG0480022786.01.T01:exon:8594;Parent=MsG0480022786.01.T01
Chr4 exon 76660303 76660638 76660303 ID=MsG0480022786.01.T01:exon:8593;Parent=MsG0480022786.01.T01
Chr4 exon 76661063 76661401 76661063 ID=MsG0480022786.01.T01:exon:8592;Parent=MsG0480022786.01.T01
Chr4 five_prime_UTR 76661347 76661401 76661347 ID=MsG0480022786.01.T01:five_prime_utr;Parent=MsG0480022786.01.T01
Chr4 CDS 76661063 76661346 76661063 ID=MsG0480022786.01.T01:cds;Parent=MsG0480022786.01.T01
Chr4 CDS 76660303 76660638 76660303 ID=MsG0480022786.01.T01:cds;Parent=MsG0480022786.01.T01
Chr4 CDS 76658570 76658741 76658570 ID=MsG0480022786.01.T01:cds;Parent=MsG0480022786.01.T01
Chr4 three_prime_UTR 76658146 76658569 76658146 ID=MsG0480022786.01.T01:three_prime_utr;Parent=MsG0480022786.01.T01
Gene Sequence

>MsG0480022786.01.T01

ATGACGGGGACGGAGGCACCGTCGGAGAAGAAGAGAGTCGCGACGGAATCTTTAGGATGGCTAACGGAATCGACGATAATGCCAAAGAAGCACAGAACCATCGAGGGTGTTGGTGCATCTTCCATTTTCGAATTGAAAGCTGAACTCTACAAATCTCAAGAAGATTCCAAAAAGTCCAGAGAATTATCAGGCCCTGACGCCGAATATCAACGCGCCAAAAACATCATCACTTCCAAAGGTCCCTATTCCAATAAAAACTCCGGTGTCGATGCACGCGATCTCAAGGATAAACTTGAGTTGAAAGCTATTAAAGATGGATCAGTGAGCTATGCTGCATTGGAGAAGAAGGCTGAGTTGTATGATAAGTTAGTTAAGGGAGAATTGTCTGATGAAGAGGATAAAGAGAAGTATTGTGTTGATTTTGTTCGTAAGAGCGATGATCATGATGATGATAATGTCTCTACCAATCCCAACGTGTTGCAAGAAAATGAACATGGTGGTGCTGGTGATGGTGATGGTGATGGTGATGGTGATGCTTTTTCGCTGTTTAACTTGAAACCTGTTGGGCTTGGTCGAGCTGCTGGAGTAGTTGACGGTGCTGAGCACAAGCGCAATGTTAGGGAAGTTCATGAAGAAGCCAGTCGTGCGAGAGAAAAGGCTTCCGAAATTAAACTACGCAGACAGGAGCAGTTAGCTGCTCAACGCGAGAAACTTAAGCAAGCCTATCTTCGGAAGAAATTGGCAGAACTGAAGGCCACTGTTGGATCTGAATCTGAGATTAAGCACACATGA

Protein sequence

>MsG0480022786.01.T01

MTGTEAPSEKKRVATESLGWLTESTIMPKKHRTIEGVGASSIFELKAELYKSQEDSKKSRELSGPDAEYQRAKNIITSKGPYSNKNSGVDARDLKDKLELKAIKDGSVSYAALEKKAELYDKLVKGELSDEEDKEKYCVDFVRKSDDHDDDNVSTNPNVLQENEHGGAGDGDGDGDGDAFSLFNLKPVGLGRAAGVVDGAEHKRNVREVHEEASRAREKASEIKLRRQEQLAAQREKLKQAYLRKKLAELKATVGSESEIKHT*