AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880041854.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880041854.01.T01 MTR_8g005155 89.204 565 29 2 16 549 1 564 0.0 1018
MsG0880041854.01.T01 MTR_7g080620 51.458 583 237 8 4 546 5 581 0.0 586
MsG0880041854.01.T01 MTR_5g084810 25.573 524 346 9 45 537 65 575 5.60e-50 181
MsG0880041854.01.T01 MTR_7g093000 26.449 552 337 15 38 539 29 561 1.59e-47 174
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880041854.01.T01 AT3G60400 44.834 542 265 3 36 547 17 554 2.79e-166 484
MsG0880041854.01.T01 AT4G19650 26.488 521 325 10 54 537 85 584 1.20e-47 175
MsG0880041854.01.T01 AT4G19650 25.451 499 314 10 76 537 90 567 4.74e-40 154
MsG0880041854.01.T01 AT5G06811 24.525 579 364 15 15 536 8 570 2.43e-36 143
MsG0880041854.01.T01 AT5G06810 25.577 520 325 15 56 536 78 574 7.48e-36 142
MsG0880041854.01.T01 AT5G45113 21.792 413 278 8 157 537 7 406 5.67e-19 89.7

Find 100 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTGTGTGCTTTGTGAATT+TGG 0.075830 8:+261916 MsG0880041854.01.T01:CDS
TCTCTAGAGTTTCAGGATTT+TGG 0.108976 8:-262895 None:intergenic
TTTGATTGCCTTCTACATTT+AGG 0.135769 8:+262818 MsG0880041854.01.T01:CDS
TGGAACAGAAATGTCGTTTA+AGG 0.220611 8:-260904 None:intergenic
GGGACACTCCTTAGAGCTTT+TGG 0.239993 8:+262946 MsG0880041854.01.T01:CDS
TAATTTCCTATGTCAGGATA+TGG 0.244795 8:+262925 MsG0880041854.01.T01:CDS
TCATGAAGCTCGAAATTTAT+TGG 0.254864 8:-263173 None:intergenic
AAACATTTGATTCTTGAGTA+TGG 0.263491 8:+262293 MsG0880041854.01.T01:CDS
TTGATTGCCTTCTACATTTA+GGG 0.265986 8:+262819 MsG0880041854.01.T01:CDS
GAAAAGTGGTTCTGAGATAA+AGG 0.272746 8:+261993 MsG0880041854.01.T01:CDS
TTAAATTTCATGCATACTAT+TGG 0.285045 8:+262722 MsG0880041854.01.T01:CDS
AATTGCTCAAACCAATGTTT+TGG 0.304518 8:-263145 None:intergenic
CATGAAGCTCGAAATTTATT+GGG 0.313412 8:-263172 None:intergenic
ACCTTTATCATGCTCTTCAT+TGG 0.329479 8:-262639 None:intergenic
CTCTAATCTCATTTCGAAGT+TGG 0.332216 8:+261093 MsG0880041854.01.T01:CDS
TCTAATCTCATTTCGAAGTT+GGG 0.359275 8:+261094 MsG0880041854.01.T01:CDS
TTCATGCATACTATTGGCTT+TGG 0.365567 8:+262728 MsG0880041854.01.T01:CDS
CATGTGATTTAAGATATTCA+TGG 0.366992 8:-262765 None:intergenic
CCCAATGAAGAGCATGATAA+AGG 0.371844 8:+262638 MsG0880041854.01.T01:CDS
ATCTGAACCTCGGCTTAATT+CGG 0.372746 8:-263006 None:intergenic
TAAGCTTGGTGTGATTTATA+CGG 0.375925 8:+261951 MsG0880041854.01.T01:CDS
GGAGTTGTTGAGTCTCAATT+TGG 0.376264 8:+262403 MsG0880041854.01.T01:CDS
ATAGGTTGCTTTCTGATTTG+AGG 0.392968 8:+262132 MsG0880041854.01.T01:CDS
CCTTTATCATGCTCTTCATT+GGG 0.406357 8:-262638 None:intergenic
AAAGATTAATTTCCTATGTC+AGG 0.406425 8:+262919 MsG0880041854.01.T01:CDS
CCATATGTGGGCTTTAGAAA+AGG 0.410319 8:+263030 MsG0880041854.01.T01:CDS
GGGCTATGGGTTTACGTGAA+TGG 0.411227 8:+262555 MsG0880041854.01.T01:CDS
TTATCGATGATGAGGTTGAT+AGG 0.413270 8:+262114 MsG0880041854.01.T01:CDS
ATGTTTGGTATGATGTTTGT+AGG 0.414620 8:+262204 MsG0880041854.01.T01:CDS
TTGTGAATTTGGATTTCCTT+GGG 0.415023 8:+261927 MsG0880041854.01.T01:CDS
AAAAGTGTCCAAAAGCTCTA+AGG 0.419374 8:-262954 None:intergenic
ATTCAATCCCTAAATGTAGA+AGG 0.419800 8:-262826 None:intergenic
AGTGATGGTAAGGGGAAGAT+AGG 0.419950 8:+262251 MsG0880041854.01.T01:CDS
ATCTGATCGGCAAAAGCATA+AGG 0.420610 8:-261046 None:intergenic
TTTGTGAATTTGGATTTCCT+TGG 0.421861 8:+261926 MsG0880041854.01.T01:CDS
GCAACATCACTTTCAATTTG+CGG 0.422663 8:-260874 None:intergenic
CATATGTGGGCTTTAGAAAA+GGG 0.423473 8:+263031 MsG0880041854.01.T01:CDS
TTCAATTTGCGGTGAAGTGC+AGG 0.426353 8:-260863 None:intergenic
ACCCATAGCCCTCATCAGAT+TGG 0.427036 8:-262543 None:intergenic
CCCAATCTGATGAGGGCTAT+GGG 0.435992 8:+262542 MsG0880041854.01.T01:CDS
GATTTGGGAGGGTGTGTTGA+AGG 0.450135 8:+262173 MsG0880041854.01.T01:CDS
AATTTCCTATGTCAGGATAT+GGG 0.450989 8:+262926 MsG0880041854.01.T01:CDS
GGAATGGATTCTAAAGGTCT+TGG 0.453391 8:+262464 MsG0880041854.01.T01:CDS
TCGGTTGATTCTACAAGGTT+CGG 0.454814 8:+262382 MsG0880041854.01.T01:CDS
AAGAACTATGCTCATGCGTT+GGG 0.457899 8:+262497 MsG0880041854.01.T01:CDS
AAAAGTGGTTCTGAGATAAA+GGG 0.465819 8:+261994 MsG0880041854.01.T01:CDS
TTGAAGGGAATGTGGATGTT+TGG 0.467882 8:+262189 MsG0880041854.01.T01:CDS
AGAAGAGGAGTTGATTGAAA+AGG 0.470802 8:+262316 MsG0880041854.01.T01:CDS
GGATTTCCTTGGGATAAGCT+TGG 0.474458 8:+261937 MsG0880041854.01.T01:CDS
CCCATAGCCCTCATCAGATT+GGG 0.475310 8:-262542 None:intergenic
AAACTATTCCATTGCAAGCA+TGG 0.484064 8:+263066 MsG0880041854.01.T01:CDS
TCCCAATCTGATGAGGGCTA+TGG 0.486736 8:+262541 MsG0880041854.01.T01:CDS
GATTCTTGAGTATGGAGAAG+AGG 0.500875 8:+262301 MsG0880041854.01.T01:CDS
ATTTGCGGTGAAGTGCAGGC+AGG 0.502083 8:-260859 None:intergenic
CGAGGTTCAGATTCCATATG+TGG 0.503568 8:+263017 MsG0880041854.01.T01:CDS
ATTTGGGAGGGTGTGTTGAA+GGG 0.510382 8:+262174 MsG0880041854.01.T01:CDS
GAAGAACTATGCTCATGCGT+TGG 0.510932 8:+262496 MsG0880041854.01.T01:CDS
AGCATAAGGGATGGATCTTG+TGG 0.512701 8:-261032 None:intergenic
TTATGATTTGAGTGATGGTA+AGG 0.517430 8:+262241 MsG0880041854.01.T01:CDS
AGGGTGTGTTGAAGGGAATG+TGG 0.519392 8:+262181 MsG0880041854.01.T01:CDS
GGGAAGATAGGTGAACTCAT+TGG 0.519466 8:+262263 MsG0880041854.01.T01:CDS
TAAGGTTGGTGTGATGATGT+TGG 0.525262 8:-260924 None:intergenic
CACATTGGAATGGATTCTAA+AGG 0.534379 8:+262458 MsG0880041854.01.T01:CDS
TTTGCGGTGAAGTGCAGGCA+GGG 0.535776 8:-260858 None:intergenic
ACCCGGCTGCTCCAAAACAT+TGG 0.539925 8:+263134 MsG0880041854.01.T01:CDS
GTTGCTTTCTGATTTGAGGT+TGG 0.540360 8:+262136 MsG0880041854.01.T01:CDS
CGATCAGATGAATGAATGAA+AGG 0.541131 8:+260825 MsG0880041854.01.T01:exon
TTGCGGTGAAGTGCAGGCAG+GGG 0.543480 8:-260857 None:intergenic
CAAGTTTCTTGTGGCGACAA+GGG 0.543532 8:-260967 None:intergenic
TCTGATCGGCAAAAGCATAA+GGG 0.549804 8:-261045 None:intergenic
TTAAGGCAATTCATGATGCA+AGG 0.553764 8:+262675 MsG0880041854.01.T01:CDS
GCTGTTGAAACACATTGGAA+TGG 0.554139 8:+262448 MsG0880041854.01.T01:CDS
CGAATCTTCCCAATCTGATG+AGG 0.559311 8:+262534 MsG0880041854.01.T01:CDS
GCAAGTTTCTTGTGGCGACA+AGG 0.559841 8:-260968 None:intergenic
CATGATAAAGGTTATCAAAG+TGG 0.567037 8:+262650 MsG0880041854.01.T01:CDS
TTGTAGATTCAGTGTCGAGA+AGG 0.567935 8:+262349 MsG0880041854.01.T01:CDS
AGTGTCCCATATCCTGACAT+AGG 0.569168 8:-262931 None:intergenic
AGTCGCAACCATGCTTGCAA+TGG 0.573982 8:-263074 None:intergenic
GGTGTGATTTATACGGAGAG+TGG 0.575450 8:+261958 MsG0880041854.01.T01:CDS
ATGATTTGAGTGATGGTAAG+GGG 0.577556 8:+262243 MsG0880041854.01.T01:CDS
AATATCTTAAATCACATGCA+TGG 0.582398 8:+262770 MsG0880041854.01.T01:CDS
ATAGCTCGGTTGATTCTACA+AGG 0.584030 8:+262377 MsG0880041854.01.T01:CDS
AATTTACTCATATTGTGAGA+CGG 0.584295 8:-262701 None:intergenic
TATGATTTGAGTGATGGTAA+GGG 0.587020 8:+262242 MsG0880041854.01.T01:CDS
AAGGGATGGATCTTGTGGAA+TGG 0.590760 8:-261027 None:intergenic
CATGGTTGCGACTAGTGACA+AGG 0.592546 8:+263084 MsG0880041854.01.T01:CDS
TAGATTCAGTGTCGAGAAGG+AGG 0.595864 8:+262352 MsG0880041854.01.T01:CDS
ATCGGCAAAAGCATAAGGGA+TGG 0.596160 8:-261041 None:intergenic
GTGACACTGCAAGTTTCTTG+TGG 0.612434 8:-260976 None:intergenic
TTGAAGCTGTTGAAACACAT+TGG 0.621474 8:+262443 MsG0880041854.01.T01:CDS
GAATCTTCCCAATCTGATGA+GGG 0.621938 8:+262535 MsG0880041854.01.T01:CDS
ATCACACCAAGCTTATCCCA+AGG 0.624221 8:-261943 None:intergenic
CACATATGGAATCTGAACCT+CGG 0.628454 8:-263016 None:intergenic
AGATAGGTGAACTCATTGGA+AGG 0.629844 8:+262267 MsG0880041854.01.T01:CDS
AAGTCAAAACATATAAACAC+CGG 0.641173 8:-262977 None:intergenic
AAAACTCAAACTCATTGATG+GGG 0.654476 8:-261798 None:intergenic
TCGAGAAGGAGGAAATAGCT+CGG 0.662293 8:+262363 MsG0880041854.01.T01:CDS
GAGGTTCAGATTCCATATGT+GGG 0.667584 8:+263018 MsG0880041854.01.T01:CDS
TAGAGAACCGAATTAAGCCG+AGG 0.677310 8:+262999 MsG0880041854.01.T01:CDS
ATGGTTGCGACTAGTGACAA+GGG 0.685800 8:+263085 MsG0880041854.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTGTGTAATTAGAAATA+AGG + Chr8:261622-261641 MsG0880041854.01.T01:intron 15.0%
!! AATTGTGTAATTAGAAATAA+GGG + Chr8:261623-261642 MsG0880041854.01.T01:intron 15.0%
!!! ATTGATCAAATTTTTTGAAA+TGG + Chr8:261592-261611 MsG0880041854.01.T01:intron 15.0%
!!! TATTTCTAATTACACAATTT+TGG - Chr8:261622-261641 None:intergenic 15.0%
!!! TTGATTTTGTAAATCAATTT+TGG - Chr8:261281-261300 None:intergenic 15.0%
!! AAAACTGCATTATTATAACT+AGG + Chr8:261681-261700 MsG0880041854.01.T01:intron 20.0%
!! CAAAAAAAGAACTTATTGTT+CGG - Chr8:261871-261890 None:intergenic 20.0%
!! GTGTAAAATTAATTCCAAAA+TGG + Chr8:261226-261245 MsG0880041854.01.T01:intron 20.0%
!! TTAAATTTCATGCATACTAT+TGG + Chr8:262722-262741 MsG0880041854.01.T01:CDS 20.0%
!! TTTAAAGATTCTCAACAATT+AGG + Chr8:261501-261520 MsG0880041854.01.T01:intron 20.0%
!!! ACAGAATGAGTATTATTTTT+TGG - Chr8:260803-260822 None:intergenic 20.0%
!!! ATTTTGTAAATCAATTTTGG+AGG - Chr8:261278-261297 None:intergenic 20.0%
!!! TAGTTATAATAATGCAGTTT+TGG - Chr8:261682-261701 None:intergenic 20.0%
!!! TGTTGAGAATCTTTAAAAAT+AGG - Chr8:261498-261517 None:intergenic 20.0%
!!! TTAACTTTTCCTTTTGTTTT+TGG + Chr8:262074-262093 MsG0880041854.01.T01:intron 20.0%
!!! TTCTAGAATTAACTATCTTT+TGG + Chr8:261460-261479 MsG0880041854.01.T01:intron 20.0%
! AAAAACTCAAACTCATTGAT+GGG - Chr8:261802-261821 None:intergenic 25.0%
! AAAAAGTTGAAAAGTTCTTG+AGG + Chr8:261152-261171 MsG0880041854.01.T01:CDS 25.0%
! AAACATTTGATTCTTGAGTA+TGG + Chr8:262293-262312 MsG0880041854.01.T01:CDS 25.0%
! AAAGATTAATTTCCTATGTC+AGG + Chr8:262919-262938 MsG0880041854.01.T01:CDS 25.0%
! AAGTCAAAACATATAAACAC+CGG - Chr8:262980-262999 None:intergenic 25.0%
! AATATCTTAAATCACATGCA+TGG + Chr8:262770-262789 MsG0880041854.01.T01:CDS 25.0%
! AATTTACTCATATTGTGAGA+CGG - Chr8:262704-262723 None:intergenic 25.0%
! TGACCTAACATAAAATAGAA+TGG - Chr8:261527-261546 None:intergenic 25.0%
! TTTGTAATGTGCAAATTGTT+GGG + Chr8:262045-262064 MsG0880041854.01.T01:intron 25.0%
!! ATTTTCTCCATTTGTATGTT+TGG + Chr8:261187-261206 MsG0880041854.01.T01:intron 25.0%
!! CAAGAACTTTTCAACTTTTT+TGG - Chr8:261152-261171 None:intergenic 25.0%
!! CATGTGATTTAAGATATTCA+TGG - Chr8:262768-262787 None:intergenic 25.0%
!! CTTTGTTTGTTGAAAAGATA+TGG + Chr8:262021-262040 MsG0880041854.01.T01:intron 25.0%
!! GAGAGAATGAAATGAATTTT+TGG - Chr8:261074-261093 None:intergenic 25.0%
!! TTTTCGATAAAATCAAGGAT+GGG + Chr8:262579-262598 MsG0880041854.01.T01:CDS 25.0%
!! TTTTGTAATGTGCAAATTGT+TGG + Chr8:262044-262063 MsG0880041854.01.T01:intron 25.0%
!!! ATGGTTTTTCGATAAAATCA+AGG + Chr8:262574-262593 MsG0880041854.01.T01:CDS 25.0%
!!! GATCAAATTTTTTGAAATGG+AGG + Chr8:261595-261614 MsG0880041854.01.T01:intron 25.0%
!!! GTGTTTTTGGATTTTGATTT+GGG + Chr8:262158-262177 MsG0880041854.01.T01:CDS 25.0%
!!! TAGAATTGATTTTGACATGT+TGG + Chr8:261366-261385 MsG0880041854.01.T01:intron 25.0%
!!! TGAATTTTTGGAAATCTGAT+CGG - Chr8:261062-261081 None:intergenic 25.0%
!!! TTCTTTTTCACCAAAAAACT+TGG + Chr8:261117-261136 MsG0880041854.01.T01:CDS 25.0%
!!! TTTCTTTTTTGAGGAGTTTA+AGG - Chr8:260945-260964 None:intergenic 25.0%
!!! TTTTTCGATAAAATCAAGGA+TGG + Chr8:262578-262597 MsG0880041854.01.T01:CDS 25.0%
AAAACTCAAACTCATTGATG+GGG - Chr8:261801-261820 None:intergenic 30.0%
AAACTAGAATTTGTAGCTGT+TGG + Chr8:261436-261455 MsG0880041854.01.T01:intron 30.0%
AATTTCCTATGTCAGGATAT+GGG + Chr8:262926-262945 MsG0880041854.01.T01:CDS 30.0%
ATGTTTGGTATGATGTTTGT+AGG + Chr8:262204-262223 MsG0880041854.01.T01:CDS 30.0%
ATTCAATCCCTAAATGTAGA+AGG - Chr8:262829-262848 None:intergenic 30.0%
CATGAAGCTCGAAATTTATT+GGG - Chr8:263175-263194 None:intergenic 30.0%
CATGATAAAGGTTATCAAAG+TGG + Chr8:262650-262669 MsG0880041854.01.T01:CDS 30.0%
GAAAAACTCAAACTCATTGA+TGG - Chr8:261803-261822 None:intergenic 30.0%
TAATTTCCTATGTCAGGATA+TGG + Chr8:262925-262944 MsG0880041854.01.T01:CDS 30.0%
TATGATTTGAGTGATGGTAA+GGG + Chr8:262242-262261 MsG0880041854.01.T01:CDS 30.0%
TCATGAAGCTCGAAATTTAT+TGG - Chr8:263176-263195 None:intergenic 30.0%
TCTAATCTCATTTCGAAGTT+GGG + Chr8:261094-261113 MsG0880041854.01.T01:CDS 30.0%
TGATTATCTGTATTGTCAAC+AGG + Chr8:261770-261789 MsG0880041854.01.T01:intron 30.0%
TTATGATTTGAGTGATGGTA+AGG + Chr8:262241-262260 MsG0880041854.01.T01:CDS 30.0%
TTGATTGCCTTCTACATTTA+GGG + Chr8:262819-262838 MsG0880041854.01.T01:CDS 30.0%
TTGTGAATTTGGATTTCCTT+GGG + Chr8:261927-261946 MsG0880041854.01.T01:CDS 30.0%
TTTGATTGCCTTCTACATTT+AGG + Chr8:262818-262837 MsG0880041854.01.T01:CDS 30.0%
TTTGTGAATTTGGATTTCCT+TGG + Chr8:261926-261945 MsG0880041854.01.T01:CDS 30.0%
! AACCAAGTTTCAATTTTGGA+AGG + Chr8:261321-261340 MsG0880041854.01.T01:intron 30.0%
! AATTGCTCAAACCAATGTTT+TGG - Chr8:263148-263167 None:intergenic 30.0%
! AGGCCATTCTATTTTATGTT+AGG + Chr8:261521-261540 MsG0880041854.01.T01:intron 30.0%
! GTGTTTTATGATTTGAGTGA+TGG + Chr8:262236-262255 MsG0880041854.01.T01:CDS 30.0%
! TACTGACAAAACAGCAATTT+TGG - Chr8:261651-261670 None:intergenic 30.0%
!! AAAAGTGGTTCTGAGATAAA+GGG + Chr8:261994-262013 MsG0880041854.01.T01:CDS 30.0%
!! ACAAGGGATTTTCTTTTTTG+AGG - Chr8:260954-260973 None:intergenic 30.0%
!! ACCAAGTTTCAATTTTGGAA+GGG + Chr8:261322-261341 MsG0880041854.01.T01:intron 30.0%
!! AGGTTATCAAAGTGGTTTTA+AGG + Chr8:262658-262677 MsG0880041854.01.T01:CDS 30.0%
!! ATTTTGACCATCCAATTTGA+TGG - Chr8:261567-261586 None:intergenic 30.0%
!! GAGTTTTTCTTTGAAAGCAT+TGG + Chr8:261814-261833 MsG0880041854.01.T01:CDS 30.0%
!! GGTTTTATGTTTAGGAAAAG+TGG + Chr8:261979-261998 MsG0880041854.01.T01:CDS 30.0%
!! TAAGCTTGGTGTGATTTATA+CGG + Chr8:261951-261970 MsG0880041854.01.T01:CDS 30.0%
!!! AATTGCTGTTTTGTCAGTAT+AGG + Chr8:261652-261671 MsG0880041854.01.T01:intron 30.0%
!!! ATCTTTTTCTCTAGAGTTTC+AGG - Chr8:262905-262924 None:intergenic 30.0%
!!! ATTGCTGTTTTGTCAGTATA+GGG + Chr8:261653-261672 MsG0880041854.01.T01:intron 30.0%
!!! GGTGTTTTTGGATTTTGATT+TGG + Chr8:262157-262176 MsG0880041854.01.T01:CDS 30.0%
!!! GTGAAAGAATCCAAGTTTTT+TGG - Chr8:261130-261149 None:intergenic 30.0%
!!! TTTTGGATTTTGATTTGGGA+GGG + Chr8:262162-262181 MsG0880041854.01.T01:CDS 30.0%
!!! TTTTTGGATTTTGATTTGGG+AGG + Chr8:262161-262180 MsG0880041854.01.T01:CDS 30.0%
!!! TTTTTTGAGGAGTTTAAGGT+TGG - Chr8:260941-260960 None:intergenic 30.0%
AAACTATTCCATTGCAAGCA+TGG + Chr8:263066-263085 MsG0880041854.01.T01:CDS 35.0%
ACCTTTATCATGCTCTTCAT+TGG - Chr8:262642-262661 None:intergenic 35.0%
ATCAGAGAGAGTAACAAATG+AGG - Chr8:261754-261773 None:intergenic 35.0%
ATGATTTGAGTGATGGTAAG+GGG + Chr8:262243-262262 MsG0880041854.01.T01:CDS 35.0%
CCTTTATCATGCTCTTCATT+GGG - Chr8:262641-262660 None:intergenic 35.0%
CGATCAGATGAATGAATGAA+AGG + Chr8:260825-260844 MsG0880041854.01.T01:exon 35.0%
CGTGAAACCAAACATACAAA+TGG - Chr8:261197-261216 None:intergenic 35.0%
CTCTAATCTCATTTCGAAGT+TGG + Chr8:261093-261112 MsG0880041854.01.T01:CDS 35.0%
GCAACATCACTTTCAATTTG+CGG - Chr8:260877-260896 None:intergenic 35.0%
TGCGTTGGGAACAATAAAAA+TGG + Chr8:262511-262530 MsG0880041854.01.T01:CDS 35.0%
TTAAGGCAATTCATGATGCA+AGG + Chr8:262675-262694 MsG0880041854.01.T01:CDS 35.0%
TTGAAGCTGTTGAAACACAT+TGG + Chr8:262443-262462 MsG0880041854.01.T01:CDS 35.0%
! AGAAGAGGAGTTGATTGAAA+AGG + Chr8:262316-262335 MsG0880041854.01.T01:CDS 35.0%
! ATAGGTTGCTTTCTGATTTG+AGG + Chr8:262132-262151 MsG0880041854.01.T01:CDS 35.0%
! CACATTGGAATGGATTCTAA+AGG + Chr8:262458-262477 MsG0880041854.01.T01:CDS 35.0%
! GCAGAACCAAGTTTCAATTT+TGG + Chr8:261317-261336 MsG0880041854.01.T01:intron 35.0%
! TACTAGAGAGCAATCCATTT+TGG - Chr8:261243-261262 None:intergenic 35.0%
! TGGAACAGAAATGTCGTTTA+AGG - Chr8:260907-260926 None:intergenic 35.0%
! TGGGAATCATAAGCTTTTAG+TGG + Chr8:262598-262617 MsG0880041854.01.T01:CDS 35.0%
! TTATCGATGATGAGGTTGAT+AGG + Chr8:262114-262133 MsG0880041854.01.T01:CDS 35.0%
!! AAAAGTGTCCAAAAGCTCTA+AGG - Chr8:262957-262976 None:intergenic 35.0%
!! CATATGTGGGCTTTAGAAAA+GGG + Chr8:263031-263050 MsG0880041854.01.T01:CDS 35.0%
!! CCGGGTGAATTTTAAAAACA+CGG - Chr8:263120-263139 None:intergenic 35.0%
!! GAAAAGTGGTTCTGAGATAA+AGG + Chr8:261993-262012 MsG0880041854.01.T01:CDS 35.0%
!! TTCATGCATACTATTGGCTT+TGG + Chr8:262728-262747 MsG0880041854.01.T01:CDS 35.0%
!!! CCGTGTTTTTAAAATTCACC+CGG + Chr8:263117-263136 MsG0880041854.01.T01:CDS 35.0%
!!! GGATTTTGGCTTAGAATCTT+TGG - Chr8:262884-262903 None:intergenic 35.0%
!!! TCTCTAGAGTTTCAGGATTT+TGG - Chr8:262898-262917 None:intergenic 35.0%
!!! TGATTTGAGGTTGGTGTTTT+TGG + Chr8:262145-262164 MsG0880041854.01.T01:CDS 35.0%
!!! TTGCTGTTTTGTCAGTATAG+GGG + Chr8:261654-261673 MsG0880041854.01.T01:intron 35.0%
AAATTGCCACGCCATCAAAT+TGG + Chr8:261553-261572 MsG0880041854.01.T01:intron 40.0%
AAGAACTATGCTCATGCGTT+GGG + Chr8:262497-262516 MsG0880041854.01.T01:CDS 40.0%
AGATAGGTGAACTCATTGGA+AGG + Chr8:262267-262286 MsG0880041854.01.T01:CDS 40.0%
ATCTGAACCTCGGCTTAATT+CGG - Chr8:263009-263028 None:intergenic 40.0%
CACATATGGAATCTGAACCT+CGG - Chr8:263019-263038 None:intergenic 40.0%
GAATCTTCCCAATCTGATGA+GGG + Chr8:262535-262554 MsG0880041854.01.T01:CDS 40.0%
GAGGTTCAGATTCCATATGT+GGG + Chr8:263018-263037 MsG0880041854.01.T01:CDS 40.0%
GATTCTTGAGTATGGAGAAG+AGG + Chr8:262301-262320 MsG0880041854.01.T01:CDS 40.0%
GCCCTTCCAAAATTGAAACT+TGG - Chr8:261326-261345 None:intergenic 40.0%
GCTGTTGAAACACATTGGAA+TGG + Chr8:262448-262467 MsG0880041854.01.T01:CDS 40.0%
GCTTGTGTGCTTTGTGAATT+TGG + Chr8:261916-261935 MsG0880041854.01.T01:CDS 40.0%
GGAGTTGTTGAGTCTCAATT+TGG + Chr8:262403-262422 MsG0880041854.01.T01:CDS 40.0%
TTGAAGGGAATGTGGATGTT+TGG + Chr8:262189-262208 MsG0880041854.01.T01:CDS 40.0%
! AGAGCTTTTGGACACTTTTC+CGG + Chr8:262958-262977 MsG0880041854.01.T01:CDS 40.0%
! ATAGCTCGGTTGATTCTACA+AGG + Chr8:262377-262396 MsG0880041854.01.T01:CDS 40.0%
! ATCTGATCGGCAAAAGCATA+AGG - Chr8:261049-261068 None:intergenic 40.0%
! CCCAATGAAGAGCATGATAA+AGG + Chr8:262638-262657 MsG0880041854.01.T01:CDS 40.0%
! GGAATGGATTCTAAAGGTCT+TGG + Chr8:262464-262483 MsG0880041854.01.T01:CDS 40.0%
! GTTGCTTTCTGATTTGAGGT+TGG + Chr8:262136-262155 MsG0880041854.01.T01:CDS 40.0%
! GTTTGGTTTCACGTTCTAGA+TGG + Chr8:261204-261223 MsG0880041854.01.T01:intron 40.0%
! TCGGTTGATTCTACAAGGTT+CGG + Chr8:262382-262401 MsG0880041854.01.T01:CDS 40.0%
! TCTGATCGGCAAAAGCATAA+GGG - Chr8:261048-261067 None:intergenic 40.0%
! TTGTAGATTCAGTGTCGAGA+AGG + Chr8:262349-262368 MsG0880041854.01.T01:CDS 40.0%
!! ACTAGTGACAAGGGTTTTGT+TGG + Chr8:263094-263113 MsG0880041854.01.T01:CDS 40.0%
!! CCATATGTGGGCTTTAGAAA+AGG + Chr8:263030-263049 MsG0880041854.01.T01:CDS 40.0%
!! TAAGGTTGGTGTGATGATGT+TGG - Chr8:260927-260946 None:intergenic 40.0%
!!! CCTTTTCTAAAGCCCACATA+TGG - Chr8:263033-263052 None:intergenic 40.0%
!!! CGGAGAGTGGTTTTATGTTT+AGG + Chr8:261971-261990 MsG0880041854.01.T01:CDS 40.0%
!!! TGCTGTTTTGTCAGTATAGG+GGG + Chr8:261655-261674 MsG0880041854.01.T01:intron 40.0%
AAGGGATGGATCTTGTGGAA+TGG - Chr8:261030-261049 None:intergenic 45.0%
AGCATAAGGGATGGATCTTG+TGG - Chr8:261035-261054 None:intergenic 45.0%
AGGGGGATTTATCGATGATG+AGG + Chr8:262106-262125 MsG0880041854.01.T01:intron 45.0%
AGTGATGGTAAGGGGAAGAT+AGG + Chr8:262251-262270 MsG0880041854.01.T01:CDS 45.0%
AGTGTCCCATATCCTGACAT+AGG - Chr8:262934-262953 None:intergenic 45.0%
ATCACACCAAGCTTATCCCA+AGG - Chr8:261946-261965 None:intergenic 45.0%
ATCGATAAATCCCCCTTCCT+CGG - Chr8:262102-262121 None:intergenic 45.0%
ATGGTTGCGACTAGTGACAA+GGG + Chr8:263085-263104 MsG0880041854.01.T01:CDS 45.0%
CAAGTTTCTTGTGGCGACAA+GGG - Chr8:260970-260989 None:intergenic 45.0%
CGAATCTTCCCAATCTGATG+AGG + Chr8:262534-262553 MsG0880041854.01.T01:CDS 45.0%
CGAGGTTCAGATTCCATATG+TGG + Chr8:263017-263036 MsG0880041854.01.T01:CDS 45.0%
GAAGAACTATGCTCATGCGT+TGG + Chr8:262496-262515 MsG0880041854.01.T01:CDS 45.0%
GGATTTCCTTGGGATAAGCT+TGG + Chr8:261937-261956 MsG0880041854.01.T01:CDS 45.0%
GGGAAGATAGGTGAACTCAT+TGG + Chr8:262263-262282 MsG0880041854.01.T01:CDS 45.0%
GGTGTGATTTATACGGAGAG+TGG + Chr8:261958-261977 MsG0880041854.01.T01:CDS 45.0%
GTGACACTGCAAGTTTCTTG+TGG - Chr8:260979-260998 None:intergenic 45.0%
TAGAGAACCGAATTAAGCCG+AGG + Chr8:262999-263018 MsG0880041854.01.T01:CDS 45.0%
TCCTCGGCACCAAAAACAAA+AGG - Chr8:262086-262105 None:intergenic 45.0%
TCGAGAAGGAGGAAATAGCT+CGG + Chr8:262363-262382 MsG0880041854.01.T01:CDS 45.0%
TTCAATTTGCGGTGAAGTGC+AGG - Chr8:260866-260885 None:intergenic 45.0%
! ATCGGCAAAAGCATAAGGGA+TGG - Chr8:261044-261063 None:intergenic 45.0%
! ATTTGGGAGGGTGTGTTGAA+GGG + Chr8:262174-262193 MsG0880041854.01.T01:CDS 45.0%
! TAGATTCAGTGTCGAGAAGG+AGG + Chr8:262352-262371 MsG0880041854.01.T01:CDS 45.0%
!! GTGGTTCTGAGATAAAGGGT+AGG + Chr8:261998-262017 MsG0880041854.01.T01:intron 45.0%
!!! AACCAATGTTTTGGAGCAGC+CGG - Chr8:263139-263158 None:intergenic 45.0%
!!! TCCTTTTGTTTTTGGTGCCG+AGG + Chr8:262082-262101 MsG0880041854.01.T01:intron 45.0%
!!! TTGTTTTTGGTGCCGAGGAA+GGG + Chr8:262087-262106 MsG0880041854.01.T01:intron 45.0%
!!! TTTGTTTTTGGTGCCGAGGA+AGG + Chr8:262086-262105 MsG0880041854.01.T01:intron 45.0%
ACCCATAGCCCTCATCAGAT+TGG - Chr8:262546-262565 None:intergenic 50.0%
AGGGTGTGTTGAAGGGAATG+TGG + Chr8:262181-262200 MsG0880041854.01.T01:CDS 50.0%
AGTCGCAACCATGCTTGCAA+TGG - Chr8:263077-263096 None:intergenic 50.0%
CATGGTTGCGACTAGTGACA+AGG + Chr8:263084-263103 MsG0880041854.01.T01:CDS 50.0%
CCCAATCTGATGAGGGCTAT+GGG + Chr8:262542-262561 MsG0880041854.01.T01:CDS 50.0%
CCCATAGCCCTCATCAGATT+GGG - Chr8:262545-262564 None:intergenic 50.0%
GCAAGTTTCTTGTGGCGACA+AGG - Chr8:260971-260990 None:intergenic 50.0%
GGGCTATGGGTTTACGTGAA+TGG + Chr8:262555-262574 MsG0880041854.01.T01:CDS 50.0%
TCCCAATCTGATGAGGGCTA+TGG + Chr8:262541-262560 MsG0880041854.01.T01:CDS 50.0%
TGCCACGCCATCAAATTGGA+TGG + Chr8:261557-261576 MsG0880041854.01.T01:intron 50.0%
! GATTTGGGAGGGTGTGTTGA+AGG + Chr8:262173-262192 MsG0880041854.01.T01:CDS 50.0%
! GGGACACTCCTTAGAGCTTT+TGG + Chr8:262946-262965 MsG0880041854.01.T01:CDS 50.0%
!! GACCATCCAATTTGATGGCG+TGG - Chr8:261562-261581 None:intergenic 50.0%
!!! ACCAATGTTTTGGAGCAGCC+GGG - Chr8:263138-263157 None:intergenic 50.0%
!!! TGTTTTTGGTGCCGAGGAAG+GGG + Chr8:262088-262107 MsG0880041854.01.T01:intron 50.0%
ACCCGGCTGCTCCAAAACAT+TGG + Chr8:263134-263153 MsG0880041854.01.T01:CDS 55.0%
ATTTGCGGTGAAGTGCAGGC+AGG - Chr8:260862-260881 None:intergenic 55.0%
TTTGCGGTGAAGTGCAGGCA+GGG - Chr8:260861-260880 None:intergenic 55.0%
!!! GTTTTTGGTGCCGAGGAAGG+GGG + Chr8:262089-262108 MsG0880041854.01.T01:intron 55.0%
TTGCGGTGAAGTGCAGGCAG+GGG - Chr8:260860-260879 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr8 gene 260785 263195 260785 ID=MsG0880041854.01;Name=MsG0880041854.01
Chr8 mRNA 260785 263195 260785 ID=MsG0880041854.01.T01;Parent=MsG0880041854.01;Name=MsG0880041854.01.T01;_AED=0.06;_eAED=0.06;_QI=51|0.5|0.33|1|1|1|3|0|549
Chr8 exon 262108 263195 262108 ID=MsG0880041854.01.T01:exon:267;Parent=MsG0880041854.01.T01
Chr8 exon 261792 262015 261792 ID=MsG0880041854.01.T01:exon:266;Parent=MsG0880041854.01.T01
Chr8 exon 260785 261173 260785 ID=MsG0880041854.01.T01:exon:265;Parent=MsG0880041854.01.T01
Chr8 five_prime_UTR 260785 260835 260785 ID=MsG0880041854.01.T01:five_prime_utr;Parent=MsG0880041854.01.T01
Chr8 CDS 260836 261173 260836 ID=MsG0880041854.01.T01:cds;Parent=MsG0880041854.01.T01
Chr8 CDS 261792 262015 261792 ID=MsG0880041854.01.T01:cds;Parent=MsG0880041854.01.T01
Chr8 CDS 262108 263195 262108 ID=MsG0880041854.01.T01:cds;Parent=MsG0880041854.01.T01
Gene Sequence

>MsG0880041854.01.T01

ATGAATGAAAGGAGAAAAGAACCCCTGCCTGCACTTCACCGCAAATTGAAAGTGATGTTGCTGAACAACCTTAAACGACATTTCTGTTCCAACATCATCACACCAACCTTAAACTCCTCAAAAAAGAAAATCCCTTGTCGCCACAAGAAACTTGCAGTGTCACATGCTCAAAAAGCACTCACTGAATATCTCCATTCCACAAGATCCATCCCTTATGCTTTTGCCGATCAGATTTCCAAAAATTCATTTCATTCTCTCTCTAATCTCATTTCGAAGTTGGGTTCTTTTTCACCAAAAAACTTGGATTCTTTCACCAAAAAAGTTGAAAAGTTCTTGAGGTACAACCCCATCAATGAGTTTGAGTTTTTCTTTGAAAGCATTGGAATTCATCATACACGTGTTTCTAGTTTGTTGCCGAACAATAAGTTCTTTTTTTGCGACGATGAATCACTTCTTGATTCTGCTTGTGTGCTTTGTGAATTTGGATTTCCTTGGGATAAGCTTGGTGTGATTTATACGGAGAGTGGTTTTATGTTTAGGAAAAGTGGTTCTGAGATAAAGGGGGGATTTATCGATGATGAGGTTGATAGGTTGCTTTCTGATTTGAGGTTGGTGTTTTTGGATTTTGATTTGGGAGGGTGTGTTGAAGGGAATGTGGATGTTTGGTATGATGTTTGTAGGAAAATTAAAGTGTTTTATGATTTGAGTGATGGTAAGGGGAAGATAGGTGAACTCATTGGAAGGAATAAACATTTGATTCTTGAGTATGGAGAAGAGGAGTTGATTGAAAAGGTTGAGTTTTTTTGTAGATTCAGTGTCGAGAAGGAGGAAATAGCTCGGTTGATTCTACAAGGTTCGGAGTTGTTGAGTCTCAATTTGGAAGCGACGATTAACGTGTTGAAGCTGTTGAAACACATTGGAATGGATTCTAAAGGTCTTGGTGATGTGAAGAAGAACTATGCTCATGCGTTGGGAACAATAAAAATGGCGAATCTTCCCAATCTGATGAGGGCTATGGGTTTACGTGAATGGTTTTTCGATAAAATCAAGGATGGGAATCATAAGCTTTTAGTGGATTTTATCACAAGCTATCCCAATGAAGAGCATGATAAAGGTTATCAAAGTGGTTTTAAGGCAATTCATGATGCAAGGTTACCGTCTCACAATATGAGTAAATTAAATTTCATGCATACTATTGGCTTTGGTGAAAATGCTATAACCATGAATATCTTAAATCACATGCATGGAACAAGTGAAGAGTTACAGAAAAGATTTGATTGCCTTCTACATTTAGGGATTGAATTCTCAAAACTGTGTAAGATAATCACAAAGCTACCAAAGATTCTAAGCCAAAATCCTGAAACTCTAGAGAAAAAGATTAATTTCCTATGTCAGGATATGGGACACTCCTTAGAGCTTTTGGACACTTTTCCGGTGTTTATATGTTTTGACTTAGAGAACCGAATTAAGCCGAGGTTCAGATTCCATATGTGGGCTTTAGAAAAGGGATTGTATTCAAAAAACTATTCCATTGCAAGCATGGTTGCGACTAGTGACAAGGGTTTTGTTGGCCGTGTTTTTAAAATTCACCCGGCTGCTCCAAAACATTGGTTTGAGCAATTCTATCCCAATAAATTTCGAGCTTCATGA

Protein sequence

>MsG0880041854.01.T01

MNERRKEPLPALHRKLKVMLLNNLKRHFCSNIITPTLNSSKKKIPCRHKKLAVSHAQKALTEYLHSTRSIPYAFADQISKNSFHSLSNLISKLGSFSPKNLDSFTKKVEKFLRYNPINEFEFFFESIGIHHTRVSSLLPNNKFFFCDDESLLDSACVLCEFGFPWDKLGVIYTESGFMFRKSGSEIKGGFIDDEVDRLLSDLRLVFLDFDLGGCVEGNVDVWYDVCRKIKVFYDLSDGKGKIGELIGRNKHLILEYGEEELIEKVEFFCRFSVEKEEIARLILQGSELLSLNLEATINVLKLLKHIGMDSKGLGDVKKNYAHALGTIKMANLPNLMRAMGLREWFFDKIKDGNHKLLVDFITSYPNEEHDKGYQSGFKAIHDARLPSHNMSKLNFMHTIGFGENAITMNILNHMHGTSEELQKRFDCLLHLGIEFSKLCKIITKLPKILSQNPETLEKKINFLCQDMGHSLELLDTFPVFICFDLENRIKPRFRFHMWALEKGLYSKNYSIASMVATSDKGFVGRVFKIHPAAPKHWFEQFYPNKFRAS*