Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880047199.01.T01 | XP_003609826.1 | 74.457 | 184 | 8 | 2 | 1 | 145 | 1 | 184 | 5.43E-13 | 73.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880047199.01.T01 | G7JPZ4 | 74.457 | 184 | 8 | 2 | 1 | 145 | 1 | 184 | 2.59e-13 | 73.6 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047814.01 | MsG0880047199.01 | 0.803239 | 3.833358e-49 | 1.916482e-46 |
| MsG0080048618.01 | MsG0880047199.01 | 0.803319 | 3.688842e-49 | 1.848026e-46 |
| MsG0080048856.01 | MsG0880047199.01 | 0.814187 | 1.750717e-51 | 1.166743e-48 |
| MsG0180000470.01 | MsG0880047199.01 | 0.804843 | 1.778518e-49 | 9.266885e-47 |
| MsG0880044565.01 | MsG0880047199.01 | 0.830441 | 2.932470e-55 | 3.089700e-52 |
| MsG0880045372.01 | MsG0880047199.01 | 0.829123 | 6.137752e-55 | 6.224027e-52 |
| MsG0880045393.01 | MsG0880047199.01 | 0.817403 | 3.358548e-52 | 2.443534e-49 |
| MsG0880045736.01 | MsG0880047199.01 | 0.806555 | 7.771508e-50 | 4.230856e-47 |
| MsG0880045754.01 | MsG0880047199.01 | 0.857424 | 1.647363e-62 | 4.063684e-59 |
| MsG0880045937.01 | MsG0880047199.01 | 0.806503 | 7.968934e-50 | 4.332500e-47 |
| MsG0880046020.01 | MsG0880047199.01 | 0.811025 | 8.605791e-51 | 5.269672e-48 |
| MsG0880047192.01 | MsG0880047199.01 | 0.865855 | 4.362515e-65 | 1.440499e-61 |
| MsG0880047199.01 | MsG0880047472.01 | 0.809315 | 2.010528e-50 | 1.176578e-47 |
| MsG0180003031.01 | MsG0880047199.01 | 0.824088 | 9.755269e-54 | 8.554873e-51 |
| MsG0180003669.01 | MsG0880047199.01 | 0.809783 | 1.595507e-50 | 9.454289e-48 |
| MsG0180003920.01 | MsG0880047199.01 | 0.807768 | 4.301887e-50 | 2.416677e-47 |
| MsG0180004180.01 | MsG0880047199.01 | 0.812035 | 5.191475e-51 | 3.264830e-48 |
| MsG0180004295.01 | MsG0880047199.01 | 0.804317 | 2.289643e-49 | 1.176843e-46 |
| MsG0180004331.01 | MsG0880047199.01 | 0.807091 | 5.985628e-50 | 3.303926e-47 |
| MsG0180004389.01 | MsG0880047199.01 | 0.829979 | 3.800823e-55 | 3.951794e-52 |
| MsG0180004943.01 | MsG0880047199.01 | 0.800725 | 1.259714e-48 | 5.908283e-46 |
| MsG0180005050.01 | MsG0880047199.01 | 0.800847 | 1.189292e-48 | 5.595568e-46 |
| MsG0180005250.01 | MsG0880047199.01 | 0.819113 | 1.377076e-52 | 1.050206e-49 |
| MsG0180005439.01 | MsG0880047199.01 | 0.806479 | 8.062097e-50 | 4.380494e-47 |
| MsG0180005842.01 | MsG0880047199.01 | 0.803052 | 4.189323e-49 | 2.084410e-46 |
| MsG0180005993.01 | MsG0880047199.01 | 0.807356 | 5.261134e-50 | 2.924091e-47 |
| MsG0180006155.01 | MsG0880047199.01 | 0.816337 | 5.824878e-52 | 4.116247e-49 |
| MsG0280006299.01 | MsG0880047199.01 | 0.811527 | 6.695046e-51 | 4.154198e-48 |
| MsG0280006375.01 | MsG0880047199.01 | 0.825665 | 4.142123e-54 | 3.800026e-51 |
| MsG0280006405.01 | MsG0880047199.01 | 0.814372 | 1.593226e-51 | 1.067137e-48 |
| MsG0780040262.01 | MsG0880047199.01 | 0.804018 | 2.641415e-49 | 1.347350e-46 |
| MsG0780040841.01 | MsG0880047199.01 | 0.812202 | 4.772581e-51 | 3.015345e-48 |
| MsG0780041305.01 | MsG0880047199.01 | 0.813173 | 2.926029e-51 | 1.896961e-48 |
| MsG0780041667.01 | MsG0880047199.01 | 0.830637 | 2.625164e-55 | 2.781995e-52 |
| MsG0880042518.01 | MsG0880047199.01 | 0.809156 | 2.175138e-50 | 1.267527e-47 |
| MsG0880042939.01 | MsG0880047199.01 | 0.804644 | 1.956478e-49 | 1.014138e-46 |
| MsG0880043479.01 | MsG0880047199.01 | 0.804546 | 2.050935e-49 | 1.060383e-46 |
| MsG0280010698.01 | MsG0880047199.01 | 0.802715 | 4.918942e-49 | 2.426651e-46 |
| MsG0280010778.01 | MsG0880047199.01 | 0.810575 | 1.076649e-50 | 6.513540e-48 |
| MsG0280011014.01 | MsG0880047199.01 | 0.802249 | 6.136433e-49 | 2.991537e-46 |
| MsG0380012460.01 | MsG0880047199.01 | 0.839801 | 1.275091e-57 | 1.780625e-54 |
| MsG0380012471.01 | MsG0880047199.01 | 0.808195 | 3.489084e-50 | 1.982359e-47 |
| MsG0380013363.01 | MsG0880047199.01 | 0.834409 | 3.048330e-56 | 3.614520e-53 |
| MsG0380013475.01 | MsG0880047199.01 | 0.804414 | 2.185618e-49 | 1.126169e-46 |
| MsG0380014537.01 | MsG0880047199.01 | 0.844320 | 8.132545e-59 | 1.308033e-55 |
| MsG0380014701.01 | MsG0880047199.01 | 0.824486 | 7.864935e-54 | 6.975921e-51 |
| MsG0680031214.01 | MsG0880047199.01 | 0.807197 | 5.685316e-50 | 3.146863e-47 |
| MsG0680031506.01 | MsG0880047199.01 | 0.845606 | 3.657671e-59 | 6.128187e-56 |
| MsG0480018640.01 | MsG0880047199.01 | 0.808715 | 2.702806e-50 | 1.556502e-47 |
| MsG0480019710.01 | MsG0880047199.01 | 0.800817 | 1.206312e-48 | 5.670968e-46 |
| MsG0480020739.01 | MsG0880047199.01 | 0.842225 | 2.944107e-58 | 4.433877e-55 |
| MsG0480022318.01 | MsG0880047199.01 | 0.801547 | 8.551041e-49 | 4.094847e-46 |
| MsG0480022696.01 | MsG0880047199.01 | 0.813602 | 2.356037e-51 | 1.545458e-48 |
| MsG0480022985.01 | MsG0880047199.01 | 0.801228 | 9.942630e-49 | 4.723125e-46 |
| MsG0480023014.01 | MsG0880047199.01 | 0.812094 | 5.039486e-51 | 3.174524e-48 |
| MsG0480023258.01 | MsG0880047199.01 | 0.802696 | 4.963299e-49 | 2.447328e-46 |
| MsG0480023361.01 | MsG0880047199.01 | 0.806463 | 8.126458e-50 | 4.413743e-47 |
| MsG0480023412.01 | MsG0880047199.01 | 0.809434 | 1.895827e-50 | 1.112982e-47 |
| MsG0480023463.01 | MsG0880047199.01 | 0.824197 | 9.194086e-54 | 8.087867e-51 |
| MsG0480023600.01 | MsG0880047199.01 | 0.817124 | 3.879460e-52 | 2.800977e-49 |
| MsG0480023873.01 | MsG0880047199.01 | 0.818152 | 2.275241e-52 | 1.689693e-49 |
| MsG0580024197.01 | MsG0880047199.01 | 0.828663 | 7.930456e-55 | 7.934232e-52 |
| MsG0580024536.01 | MsG0880047199.01 | 0.808240 | 3.413075e-50 | 1.941468e-47 |
| MsG0580024733.01 | MsG0880047199.01 | 0.807141 | 5.844005e-50 | 3.229826e-47 |
| MsG0580024781.01 | MsG0880047199.01 | 0.843209 | 1.612924e-58 | 2.505169e-55 |
| MsG0580025664.01 | MsG0880047199.01 | 0.809741 | 1.628790e-50 | 9.640872e-48 |
| MsG0380015440.01 | MsG0880047199.01 | 0.827140 | 1.844465e-54 | 1.765176e-51 |
| MsG0380015555.01 | MsG0880047199.01 | 0.832985 | 6.916223e-56 | 7.858072e-53 |
| MsG0380015831.01 | MsG0880047199.01 | 0.807040 | 6.138169e-50 | 3.383650e-47 |
| MsG0380016407.01 | MsG0880047199.01 | 0.814911 | 1.210162e-51 | 8.223995e-49 |
| MsG0380016970.01 | MsG0880047199.01 | 0.821201 | 4.578749e-53 | 3.700859e-50 |
| MsG0380016971.01 | MsG0880047199.01 | 0.851334 | 9.498361e-61 | 1.916251e-57 |
| MsG0380017375.01 | MsG0880047199.01 | 0.823211 | 1.564747e-53 | 1.338680e-50 |
| MsG0580029008.01 | MsG0880047199.01 | 0.821443 | 4.026251e-53 | 3.276066e-50 |
| MsG0580029762.01 | MsG0880047199.01 | 0.817964 | 2.508723e-52 | 1.853450e-49 |
| MsG0580029926.01 | MsG0880047199.01 | 0.812031 | 5.200651e-51 | 3.270320e-48 |
| MsG0280007088.01 | MsG0880047199.01 | 0.805853 | 1.092035e-49 | 5.839773e-47 |
| MsG0280007529.01 | MsG0880047199.01 | 0.846006 | 2.848066e-59 | 4.834465e-56 |
| MsG0280007710.01 | MsG0880047199.01 | 0.800408 | 1.461930e-48 | 6.801933e-46 |
| MsG0280008457.01 | MsG0880047199.01 | 0.806521 | 7.900970e-50 | 4.297491e-47 |
| MsG0280010233.01 | MsG0880047199.01 | 0.821718 | 3.479507e-53 | 2.853164e-50 |
| MsG0780036663.01 | MsG0880047199.01 | 0.801662 | 8.100571e-49 | 3.890360e-46 |
| MsG0780038401.01 | MsG0880047199.01 | 0.820252 | 7.568533e-53 | 5.957694e-50 |
| MsG0780039243.01 | MsG0880047199.01 | 0.815958 | 7.079369e-52 | 4.950838e-49 |
| MsG0780039858.01 | MsG0880047199.01 | 0.802377 | 5.773838e-49 | 2.824092e-46 |
| MsG0780040044.01 | MsG0880047199.01 | 0.824582 | 7.467271e-54 | 6.642116e-51 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880047199.01.T01 | MTR_4g122900 | 74.457 | 184 | 8 | 2 | 1 | 145 | 1 | 184 | 6.57e-17 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 45 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAAATTTACCAACAATTTC+AGG | 0.148545 | 8:-83211253 | None:intergenic |
| TAAACTGTTGTAGGAGGATT+TGG | 0.243160 | 8:+83210725 | MsG0880047199.01.T01:intron |
| TATTATCATGCAACATTGTT+AGG | 0.247228 | 8:+83211098 | MsG0880047199.01.T01:three_prime_UTR |
| AATTTATCTTAGTAATTTGT+AGG | 0.260267 | 8:+83211197 | MsG0880047199.01.T01:three_prime_UTR |
| CCTCTTCAGCGTTGCCTAAA+GGG | 0.272875 | 8:-83210767 | None:intergenic |
| AATTGTTGGTAAATTTATTC+TGG | 0.273288 | 8:+83211258 | MsG0880047199.01.T01:three_prime_UTR |
| TCCTCTTCAGCGTTGCCTAA+AGG | 0.387128 | 8:-83210768 | None:intergenic |
| GACTACCTTGTGCGCCCTTT+AGG | 0.392973 | 8:+83210753 | MsG0880047199.01.T01:CDS |
| CTGCCAAGGCTCCACCAAAA+AGG | 0.395839 | 8:+83210871 | MsG0880047199.01.T01:CDS |
| TTCTGACACCCTGAAATTGT+TGG | 0.409195 | 8:+83211244 | MsG0880047199.01.T01:three_prime_UTR |
| TAGGATTTCTAGTTTCTGTC+TGG | 0.412200 | 8:+83211117 | MsG0880047199.01.T01:three_prime_UTR |
| ATTTCTAGTTTCTGTCTGGT+TGG | 0.442891 | 8:+83211121 | MsG0880047199.01.T01:three_prime_UTR |
| GTTGGTGCATAGTCGATTGT+TGG | 0.451108 | 8:+83211139 | MsG0880047199.01.T01:three_prime_UTR |
| AAACTGTTGTAGGAGGATTT+GGG | 0.458918 | 8:+83210726 | MsG0880047199.01.T01:intron |
| TAAATTTACCAACAATTTCA+GGG | 0.473222 | 8:-83211252 | None:intergenic |
| GGATAAAGTTGAGGAGAAAG+AGG | 0.478281 | 8:+83209614 | MsG0880047199.01.T01:CDS |
| GAGATAAGATGAGTAGGTCC+TGG | 0.502070 | 8:+83211052 | MsG0880047199.01.T01:three_prime_UTR |
| GAATTTCAAGATGAAGGTTA+CGG | 0.508118 | 8:+83209581 | None:intergenic |
| CGTTGCCTAAAGGGCGCACA+AGG | 0.528921 | 8:-83210758 | None:intergenic |
| ATATTGATCTAATTGACCTA+TGG | 0.530077 | 8:-83211008 | None:intergenic |
| CCCTTTAGGCAACGCTGAAG+AGG | 0.547020 | 8:+83210767 | MsG0880047199.01.T01:CDS |
| AGAGAGAACAAAACAACTCC+AGG | 0.557428 | 8:-83211070 | None:intergenic |
| GAAAATGGTGAGGAAGATGA+AGG | 0.566956 | 8:+83210819 | MsG0880047199.01.T01:CDS |
| CGGCGATGACGACGGAGACG+AGG | 0.569029 | 8:+83209695 | MsG0880047199.01.T01:CDS |
| GAAGGTTACGGAAGATTCGA+AGG | 0.578457 | 8:+83209593 | MsG0880047199.01.T01:CDS |
| TGTTGGTTGAAACTTCTGCT+AGG | 0.580755 | 8:+83211156 | MsG0880047199.01.T01:three_prime_UTR |
| TGAGAACGACGACGATGATG+AGG | 0.590523 | 8:+83209874 | MsG0880047199.01.T01:CDS |
| CTGGGTCTATTATATGCTTG+AGG | 0.593730 | 8:+83210971 | MsG0880047199.01.T01:three_prime_UTR |
| TTTAGGCAACGCTGAAGAGG+AGG | 0.618802 | 8:+83210770 | MsG0880047199.01.T01:CDS |
| GGACTTAACAAGTCAACCAT+AGG | 0.625038 | 8:+83210992 | MsG0880047199.01.T01:three_prime_UTR |
| TGATGATGAGAAGGCTGCCA+AGG | 0.626187 | 8:+83210857 | MsG0880047199.01.T01:CDS |
| TGAAGATGATGATGATGAGA+AGG | 0.635914 | 8:+83210848 | MsG0880047199.01.T01:CDS |
| CTCAAGCATATAATAGACCC+AGG | 0.638779 | 8:-83210970 | None:intergenic |
| TGATGAGGAGAACGATGAAG+AGG | 0.641685 | 8:+83209889 | MsG0880047199.01.T01:CDS |
| AGATTCGAAGGATAAAGTTG+AGG | 0.642562 | 8:+83209605 | MsG0880047199.01.T01:CDS |
| TGAACCAGAAGAAAATGGTG+AGG | 0.647866 | 8:+83210809 | MsG0880047199.01.T01:CDS |
| TTGAGTGATGAAGATGACGA+AGG | 0.667428 | 8:+83209645 | MsG0880047199.01.T01:CDS |
| GTAGACGACGGCGATGACGA+CGG | 0.674867 | 8:+83209687 | MsG0880047199.01.T01:CDS |
| TGACGAAGGAGATGATTCCG+CGG | 0.677137 | 8:+83209659 | MsG0880047199.01.T01:CDS |
| GATGATTCAGATGATGACGA+TGG | 0.684292 | 8:+83210912 | MsG0880047199.01.T01:CDS |
| GATTCAGATGATGACGATGG+AGG | 0.693060 | 8:+83210915 | MsG0880047199.01.T01:CDS |
| TCCGCGGAGGAAGTAGACGA+CGG | 0.695976 | 8:+83209675 | MsG0880047199.01.T01:CDS |
| CGAAGGAGATGATTCCGCGG+AGG | 0.706879 | 8:+83209662 | MsG0880047199.01.T01:CDS |
| GCCGTCGTCTACTTCCTCCG+CGG | 0.720282 | 8:-83209676 | None:intergenic |
| GGAGACGAGGATGATGACGA+CGG | 0.760759 | 8:+83209708 | MsG0880047199.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTAAAACTACTTTTAA+AGG | - | Chr8:83210016-83210035 | None:intergenic | 10.0% |
| !! | ATTAACAATTTCAACAAATT+AGG | - | Chr8:83209948-83209967 | None:intergenic | 15.0% |
| !! | TAAAACAAGTATATATAAGT+CGG | - | Chr8:83209918-83209937 | None:intergenic | 15.0% |
| !! | TTAACAATTTCAACAAATTA+GGG | - | Chr8:83209947-83209966 | None:intergenic | 15.0% |
| !!! | AATTTATCTTAGTAATTTGT+AGG | + | Chr8:83211197-83211216 | MsG0880047199.01.T01:three_prime_UTR | 15.0% |
| !!! | TAATTTTTCAATTTTGAGTT+AGG | + | Chr8:83210029-83210048 | MsG0880047199.01.T01:intron | 15.0% |
| !! | ATAAATTTACCAACAATTTC+AGG | - | Chr8:83211256-83211275 | None:intergenic | 20.0% |
| !! | ATAATTCAATTTCACTTATG+AGG | + | Chr8:83210701-83210720 | MsG0880047199.01.T01:intron | 20.0% |
| !! | GTACTTATAAAAAATGATAG+AGG | + | Chr8:83210366-83210385 | MsG0880047199.01.T01:intron | 20.0% |
| !! | TAAATTTACCAACAATTTCA+GGG | - | Chr8:83211255-83211274 | None:intergenic | 20.0% |
| !! | TAAGTGAAATTGAATTATAG+AGG | - | Chr8:83210699-83210718 | None:intergenic | 20.0% |
| !!! | AATTGTTGGTAAATTTATTC+TGG | + | Chr8:83211258-83211277 | MsG0880047199.01.T01:three_prime_UTR | 20.0% |
| ! | ATATTGATCTAATTGACCTA+TGG | - | Chr8:83211011-83211030 | None:intergenic | 25.0% |
| ! | TATTATCATGCAACATTGTT+AGG | + | Chr8:83211098-83211117 | MsG0880047199.01.T01:three_prime_UTR | 25.0% |
| ! | TGTTCGTTAATTTCATTCAT+AGG | + | Chr8:83209981-83210000 | MsG0880047199.01.T01:intron | 25.0% |
| !! | TTTAGAATTATGCAGTATGT+TGG | + | Chr8:83210341-83210360 | MsG0880047199.01.T01:intron | 25.0% |
| !!! | TCAATTGTTGTGTTTTGAAT+CGG | + | Chr8:83210571-83210590 | MsG0880047199.01.T01:intron | 25.0% |
| GCAGCAAAATTGAATTATAC+AGG | - | Chr8:83210600-83210619 | None:intergenic | 30.0% | |
| TGCTGCAATTAGTAGTTAAA+AGG | - | Chr8:83210418-83210437 | None:intergenic | 30.0% | |
| TGTATGTTATGAGTTCATAG+AGG | - | Chr8:83210529-83210548 | None:intergenic | 30.0% | |
| TTATGAGGATAAACTGTTGT+AGG | + | Chr8:83210716-83210735 | MsG0880047199.01.T01:intron | 30.0% | |
| ! | GATTTTGAACCAGAAGAAAA+TGG | + | Chr8:83210804-83210823 | MsG0880047199.01.T01:CDS | 30.0% |
| ! | TTTTCAGAGATAAGATGAGT+AGG | + | Chr8:83211046-83211065 | MsG0880047199.01.T01:three_prime_UTR | 30.0% |
| !!! | TCAATTTTGAGTTAGGATGA+AGG | + | Chr8:83210036-83210055 | MsG0880047199.01.T01:intron | 30.0% |
| AAACTGTTGTAGGAGGATTT+GGG | + | Chr8:83210726-83210745 | MsG0880047199.01.T01:intron | 35.0% | |
| ACCCTCAAAAAAATAGACCT+GGG | + | Chr8:83210953-83210972 | MsG0880047199.01.T01:exon | 35.0% | |
| AGATTCGAAGGATAAAGTTG+AGG | + | Chr8:83209605-83209624 | MsG0880047199.01.T01:CDS | 35.0% | |
| ATTATAGAGGTAGCAGAGAT+TGG | - | Chr8:83210686-83210705 | None:intergenic | 35.0% | |
| TAAACTGTTGTAGGAGGATT+TGG | + | Chr8:83210725-83210744 | MsG0880047199.01.T01:intron | 35.0% | |
| ! | TGAAGATGATGATGATGAGA+AGG | + | Chr8:83210848-83210867 | MsG0880047199.01.T01:CDS | 35.0% |
| ! | TTATCTGACCTCTTCCTTTT+TGG | - | Chr8:83210888-83210907 | None:intergenic | 35.0% |
| !! | ATTTCTAGTTTCTGTCTGGT+TGG | + | Chr8:83211121-83211140 | MsG0880047199.01.T01:three_prime_UTR | 35.0% |
| !! | TAGGATTTCTAGTTTCTGTC+TGG | + | Chr8:83211117-83211136 | MsG0880047199.01.T01:three_prime_UTR | 35.0% |
| !!! | ACCCAGGTCTATTTTTTTGA+GGG | - | Chr8:83210957-83210976 | None:intergenic | 35.0% |
| AGAGAGAACAAAACAACTCC+AGG | - | Chr8:83211073-83211092 | None:intergenic | 40.0% | |
| CTCAAGCATATAATAGACCC+AGG | - | Chr8:83210973-83210992 | None:intergenic | 40.0% | |
| CTGGGTCTATTATATGCTTG+AGG | + | Chr8:83210971-83210990 | MsG0880047199.01.T01:three_prime_UTR | 40.0% | |
| GAAAATGGTGAGGAAGATGA+AGG | + | Chr8:83210819-83210838 | MsG0880047199.01.T01:CDS | 40.0% | |
| GACCCTCAAAAAAATAGACC+TGG | + | Chr8:83210952-83210971 | MsG0880047199.01.T01:exon | 40.0% | |
| GGACTTAACAAGTCAACCAT+AGG | + | Chr8:83210992-83211011 | MsG0880047199.01.T01:three_prime_UTR | 40.0% | |
| GGATAAAGTTGAGGAGAAAG+AGG | + | Chr8:83209614-83209633 | MsG0880047199.01.T01:CDS | 40.0% | |
| TGAACCAGAAGAAAATGGTG+AGG | + | Chr8:83210809-83210828 | MsG0880047199.01.T01:CDS | 40.0% | |
| TGAGGATAAACTGTTGTAGG+AGG | + | Chr8:83210719-83210738 | MsG0880047199.01.T01:intron | 40.0% | |
| TTCTGACACCCTGAAATTGT+TGG | + | Chr8:83211244-83211263 | MsG0880047199.01.T01:three_prime_UTR | 40.0% | |
| TTGAGTGATGAAGATGACGA+AGG | + | Chr8:83209645-83209664 | MsG0880047199.01.T01:CDS | 40.0% | |
| ! | GATGATTCAGATGATGACGA+TGG | + | Chr8:83210912-83210931 | MsG0880047199.01.T01:CDS | 40.0% |
| ! | TCTTCCTCACCATTTTCTTC+TGG | - | Chr8:83210816-83210835 | None:intergenic | 40.0% |
| ! | TGTTGGTTGAAACTTCTGCT+AGG | + | Chr8:83211156-83211175 | MsG0880047199.01.T01:three_prime_UTR | 40.0% |
| !!! | GACCCAGGTCTATTTTTTTG+AGG | - | Chr8:83210958-83210977 | None:intergenic | 40.0% |
| GAAGGTTACGGAAGATTCGA+AGG | + | Chr8:83209593-83209612 | MsG0880047199.01.T01:CDS | 45.0% | |
| GAGATAAGATGAGTAGGTCC+TGG | + | Chr8:83211052-83211071 | MsG0880047199.01.T01:three_prime_UTR | 45.0% | |
| GTTGGTGCATAGTCGATTGT+TGG | + | Chr8:83211139-83211158 | MsG0880047199.01.T01:three_prime_UTR | 45.0% | |
| TGATGAGGACGATGATGAAG+AGG | + | Chr8:83209731-83209750 | MsG0880047199.01.T01:intron | 45.0% | |
| TGATGAGGAGAACGATGAAG+AGG | + | Chr8:83209889-83209908 | MsG0880047199.01.T01:CDS | 45.0% | |
| ! | GATTCAGATGATGACGATGG+AGG | + | Chr8:83210915-83210934 | MsG0880047199.01.T01:CDS | 45.0% |
| ! | TCTGACCTCTTCCTTTTTGG+TGG | - | Chr8:83210885-83210904 | None:intergenic | 45.0% |
| ACGACGATGAAAGAAGCAGC+AGG | + | Chr8:83209806-83209825 | MsG0880047199.01.T01:intron | 50.0% | |
| AGACGACGATGATGAGGATG+AGG | + | Chr8:83209782-83209801 | MsG0880047199.01.T01:intron | 50.0% | |
| AGGCTCCACCAAAAAGGAAG+AGG | + | Chr8:83210877-83210896 | MsG0880047199.01.T01:CDS | 50.0% | |
| AGGTAGCAGAGATTGGCAAG+CGG | - | Chr8:83210679-83210698 | None:intergenic | 50.0% | |
| ATGAAAGAAGCAGCAGGTGC+CGG | + | Chr8:83209812-83209831 | MsG0880047199.01.T01:intron | 50.0% | |
| CCTCTTCAGCGTTGCCTAAA+GGG | - | Chr8:83210770-83210789 | None:intergenic | 50.0% | |
| GACGACGATGATGAGGATGA+GGG | + | Chr8:83209783-83209802 | MsG0880047199.01.T01:intron | 50.0% | |
| TCCTCTTCAGCGTTGCCTAA+AGG | - | Chr8:83210771-83210790 | None:intergenic | 50.0% | |
| TGACGAAGGAGATGATTCCG+CGG | + | Chr8:83209659-83209678 | MsG0880047199.01.T01:CDS | 50.0% | |
| TGAGAACGACGACGATGATG+AGG | + | Chr8:83209874-83209893 | MsG0880047199.01.T01:CDS | 50.0% | |
| TTTAGGCAACGCTGAAGAGG+AGG | + | Chr8:83210770-83210789 | MsG0880047199.01.T01:CDS | 50.0% | |
| ! | TGATGATGAGAAGGCTGCCA+AGG | + | Chr8:83210857-83210876 | MsG0880047199.01.T01:CDS | 50.0% |
| !! | CTTCCTTTTTGGTGGAGCCT+TGG | - | Chr8:83210877-83210896 | None:intergenic | 50.0% |
| CCCTTTAGGCAACGCTGAAG+AGG | + | Chr8:83210767-83210786 | MsG0880047199.01.T01:CDS | 55.0% | |
| CTGCCAAGGCTCCACCAAAA+AGG | + | Chr8:83210871-83210890 | MsG0880047199.01.T01:CDS | 55.0% | |
| GACTACCTTGTGCGCCCTTT+AGG | + | Chr8:83210753-83210772 | MsG0880047199.01.T01:CDS | 55.0% | |
| TGAAGAGGATGACGACGACG+AGG | + | Chr8:83209746-83209765 | MsG0880047199.01.T01:intron | 55.0% | |
| ! | GGAGACGAGGATGATGACGA+CGG | + | Chr8:83209708-83209727 | MsG0880047199.01.T01:CDS | 55.0% |
| ! | GGATGATGACGACGGTGATG+AGG | + | Chr8:83209716-83209735 | MsG0880047199.01.T01:intron | 55.0% |
| AGGGTCACCACCTTGCTCAC+CGG | - | Chr8:83209834-83209853 | None:intergenic | 60.0% | |
| CATCGTCGTCGTCGTCGTCA+GGG | - | Chr8:83209853-83209872 | None:intergenic | 60.0% | |
| CGAAGGAGATGATTCCGCGG+AGG | + | Chr8:83209662-83209681 | MsG0880047199.01.T01:CDS | 60.0% | |
| GTAGACGACGGCGATGACGA+CGG | + | Chr8:83209687-83209706 | MsG0880047199.01.T01:CDS | 60.0% | |
| TCATCATCGTCGTCTCCGCC+AGG | - | Chr8:83209777-83209796 | None:intergenic | 60.0% | |
| TCATCGTCGTCGTCGTCGTC+AGG | - | Chr8:83209854-83209873 | None:intergenic | 60.0% | |
| TCCGCGGAGGAAGTAGACGA+CGG | + | Chr8:83209675-83209694 | MsG0880047199.01.T01:CDS | 60.0% | |
| TGGCGGAGACGACGATGATG+AGG | + | Chr8:83209776-83209795 | MsG0880047199.01.T01:intron | 60.0% | |
| ! | CGTTGCCTAAAGGGCGCACA+AGG | - | Chr8:83210761-83210780 | None:intergenic | 60.0% |
| GACGACGACGAGGATGCTCC+TGG | + | Chr8:83209756-83209775 | MsG0880047199.01.T01:intron | 65.0% | |
| GACGACGAGGATGCTCCTGG+CGG | + | Chr8:83209759-83209778 | MsG0880047199.01.T01:intron | 65.0% | |
| GCCGTCGTCTACTTCCTCCG+CGG | - | Chr8:83209679-83209698 | None:intergenic | 65.0% | |
| CGGCGATGACGACGGAGACG+AGG | + | Chr8:83209695-83209714 | MsG0880047199.01.T01:CDS | 70.0% | |
| !! | GCAGCAGGTGCCGGTGAGCA+AGG | + | Chr8:83209821-83209840 | MsG0880047199.01.T01:intron | 70.0% |
| !! | GCAGGTGCCGGTGAGCAAGG+TGG | + | Chr8:83209824-83209843 | MsG0880047199.01.T01:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 83209591 | 83211303 | 83209591 | ID=MsG0880047199.01;Name=MsG0880047199.01 |
| Chr8 | mRNA | 83209591 | 83211303 | 83209591 | ID=MsG0880047199.01.T01;Parent=MsG0880047199.01;Name=MsG0880047199.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0.5|0.33|1|1|1|3|335|145 |
| Chr8 | exon | 83209591 | 83209729 | 83209591 | ID=MsG0880047199.01.T01:exon:20623;Parent=MsG0880047199.01.T01 |
| Chr8 | exon | 83209843 | 83209910 | 83209843 | ID=MsG0880047199.01.T01:exon:20624;Parent=MsG0880047199.01.T01 |
| Chr8 | exon | 83210738 | 83211303 | 83210738 | ID=MsG0880047199.01.T01:exon:20625;Parent=MsG0880047199.01.T01 |
| Chr8 | CDS | 83209591 | 83209729 | 83209591 | ID=MsG0880047199.01.T01:cds;Parent=MsG0880047199.01.T01 |
| Chr8 | CDS | 83209843 | 83209910 | 83209843 | ID=MsG0880047199.01.T01:cds;Parent=MsG0880047199.01.T01 |
| Chr8 | CDS | 83210738 | 83210968 | 83210738 | ID=MsG0880047199.01.T01:cds;Parent=MsG0880047199.01.T01 |
| Chr8 | three_prime_UTR | 83210969 | 83211303 | 83210969 | ID=MsG0880047199.01.T01:three_prime_utr;Parent=MsG0880047199.01.T01 |
| Gene Sequence |
| Protein sequence |
