AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004180.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004180.01.T01 MTR_8g077990 71.429 700 50 10 1 581 25 693 0.0 835
MsG0180004180.01.T01 MTR_1g076600 96.040 101 4 0 481 581 55 155 8.82e-68 217
MsG0180004180.01.T01 MTR_7g029435 94.565 92 5 0 490 581 1 92 4.37e-58 189
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004180.01.T01 AT5G41020 55.124 283 126 1 296 578 302 583 1.47e-113 350

Find 116 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAATAAATTCCAGCTCTTC+AGG 0.282279 1:-74552395 None:intergenic
AACAAATGATCCACCATATT+GGG 0.286872 1:+74552879 MsG0180004180.01.T01:CDS
GAAGATCAAAGCAGCTGTTT+TGG 0.293853 1:+74552190 MsG0180004180.01.T01:CDS
CATTGAGCAGGTGGAAGTTC+TGG 0.301208 1:+74552922 MsG0180004180.01.T01:CDS
GTCACTATACTCCTTAAGTT+TGG 0.317240 1:-74551781 None:intergenic
TTGATCTTCTCATCTTCTTC+GGG 0.322099 1:-74552176 None:intergenic
TTTGATCTTCTCATCTTCTT+CGG 0.324153 1:-74552177 None:intergenic
GAACAAATGATCCACCATAT+TGG 0.329038 1:+74552878 MsG0180004180.01.T01:CDS
GATAAACGCTTTATATGCTT+TGG 0.342448 1:+74552778 MsG0180004180.01.T01:CDS
TATATAGATTCTCATGGTTT+GGG 0.357329 1:+74552215 MsG0180004180.01.T01:CDS
GTATATAGATTCTCATGGTT+TGG 0.365976 1:+74552214 MsG0180004180.01.T01:CDS
TTATGTGTGCCTTCTTCACT+TGG 0.367399 1:-74551477 None:intergenic
TCATCATCTTCACATTCATT+TGG 0.373205 1:-74551711 None:intergenic
GGGAGATGAAGGTCTTGATA+TGG 0.374391 1:+74552235 MsG0180004180.01.T01:CDS
GGAGGCAATTGGTCACAAAT+TGG 0.375244 1:+74552655 MsG0180004180.01.T01:CDS
TCTCTATCTTTCAACAGGTT+AGG 0.380269 1:-74552959 None:intergenic
ACTCCTAACTCTGCACATAA+TGG 0.384709 1:+74552065 MsG0180004180.01.T01:CDS
GTTCCATTATGTGCAGAGTT+AGG 0.391649 1:-74552068 None:intergenic
GAGGGCAGTAGCCGACGCTT+TGG 0.393084 1:+74552448 MsG0180004180.01.T01:CDS
TGGCTGCATGCTCCCCAATA+TGG 0.395764 1:-74552892 None:intergenic
CAGATCAGCTACATTGCTTT+CGG 0.400572 1:-74551007 None:intergenic
CTCTATCTTTCAACAGGTTA+GGG 0.404823 1:-74552958 None:intergenic
CATTGGTTGCTAGTGGTGAT+TGG 0.407410 1:+74552732 MsG0180004180.01.T01:CDS
AGGCCTCTCTATCTTTCAAC+AGG 0.417278 1:-74552964 None:intergenic
AGAAGCAATGAAGGTGATAA+TGG 0.417384 1:+74551234 MsG0180004180.01.T01:intron
TTCCAACAGCCTCTAACCTC+GGG 0.421209 1:-74552278 None:intergenic
GTTTCATTATGTGCACAGTT+AGG 0.421260 1:-74552044 None:intergenic
TAGCCCTCTCGAGCAGATCT+AGG 0.424550 1:-74552580 None:intergenic
AAAGGGAGGGGAGGTGTAAG+TGG 0.424706 1:+74552369 MsG0180004180.01.T01:CDS
GTTGCGAGATAATATTTGTT+GGG 0.434220 1:+74552634 MsG0180004180.01.T01:CDS
AAATTACACCCCGAGGTTAG+AGG 0.442409 1:+74552269 MsG0180004180.01.T01:CDS
AGGGCAGTAGCCGACGCTTT+GGG 0.446431 1:+74552449 MsG0180004180.01.T01:CDS
GCTGCATGGAGGAGGTAGAC+TGG 0.446516 1:+74552807 MsG0180004180.01.T01:CDS
CTAAACGCAAACAAGTAACT+TGG 0.447239 1:+74552093 MsG0180004180.01.T01:CDS
TGCTCATGCTTTGTTAGAAA+GGG 0.448940 1:+74552352 MsG0180004180.01.T01:CDS
GTGCTCATGCTTTGTTAGAA+AGG 0.460254 1:+74552351 MsG0180004180.01.T01:CDS
AATATTTGTTGGGAGGCAAT+TGG 0.463198 1:+74552644 MsG0180004180.01.T01:CDS
TTTCCAACAGCCTCTAACCT+CGG 0.465967 1:-74552279 None:intergenic
ACACTGTAATGAGGCCTCTC+AGG 0.470045 1:-74552320 None:intergenic
TGCTTTGGATGCTTGCTGCA+TGG 0.479442 1:+74552793 MsG0180004180.01.T01:CDS
TCTCATGGTTTGGGAGATGA+AGG 0.479659 1:+74552224 MsG0180004180.01.T01:CDS
TAGAAGCAATGGAGGTGAAG+AGG 0.481860 1:+74551608 MsG0180004180.01.T01:CDS
ACGGCTTATTGCGTGGGAAA+AGG 0.484774 1:+74552147 MsG0180004180.01.T01:CDS
AAGAAGCAGAAATTAATTGA+AGG 0.487991 1:+74551558 MsG0180004180.01.T01:CDS
TGTTGCGAGATAATATTTGT+TGG 0.489321 1:+74552633 MsG0180004180.01.T01:CDS
GGATGCTTGCTGCATGGAGG+AGG 0.492182 1:+74552799 MsG0180004180.01.T01:CDS
AAGAAGAAACCAAGTGAAGA+AGG 0.493411 1:+74551468 MsG0180004180.01.T01:CDS
GAGTGAGGAAAGCAAACATA+AGG 0.496559 1:+74551293 MsG0180004180.01.T01:CDS
AAGTGAAGAAAGTAAACATA+AGG 0.498172 1:+74551671 MsG0180004180.01.T01:CDS
TGAAGGTGATAATGGCGAGC+AGG 0.499793 1:+74551242 MsG0180004180.01.T01:CDS
ATAGGTCTGGTGATGTATGC+AGG 0.510035 1:+74552846 MsG0180004180.01.T01:CDS
TGTAATGACTTTAGAAGCAA+TGG 0.511180 1:+74551597 MsG0180004180.01.T01:CDS
AACAACTTTAGAAGCAATGA+AGG 0.512264 1:+74551225 MsG0180004180.01.T01:intron
TAAGTGGACACCTGAAGAGC+TGG 0.512398 1:+74552385 MsG0180004180.01.T01:CDS
AATTGAGGAAGCCAAACTTA+AGG 0.514474 1:+74551770 MsG0180004180.01.T01:CDS
AGTGACATTATAAGCAATGA+AGG 0.517478 1:+74551798 MsG0180004180.01.T01:CDS
TTTGGGTAAAAGTCGAGATC+AGG 0.519802 1:+74552466 MsG0180004180.01.T01:CDS
GAAGAAGAAGAAACTAATTG+AGG 0.520193 1:+74551755 MsG0180004180.01.T01:CDS
AGCCAAGTCATTCATTGAGC+AGG 0.521908 1:+74552910 MsG0180004180.01.T01:CDS
AATCTACTTGAGCATAGGTC+TGG 0.523977 1:+74552833 MsG0180004180.01.T01:CDS
CTGCATGGAGGAGGTAGACT+GGG 0.526890 1:+74552808 MsG0180004180.01.T01:CDS
AAAAGCAATAAAAGTGAAGA+TGG 0.528970 1:+74551039 MsG0180004180.01.T01:CDS
CGAGCAATTAACATCAGCAT+TGG 0.533412 1:+74552715 MsG0180004180.01.T01:CDS
TTGGAGTATATAGATTCTCA+TGG 0.535104 1:+74552209 MsG0180004180.01.T01:CDS
AAGTGAAGAAGGCACACATA+AGG 0.535379 1:+74551479 MsG0180004180.01.T01:CDS
ACCCCGAGGTTAGAGGCTGT+TGG 0.535419 1:+74552276 MsG0180004180.01.T01:CDS
AAAAGTGAAGATGGCGAGCA+AGG 0.538269 1:+74551048 MsG0180004180.01.T01:CDS
CATATAAAGCGTTTATCAAG+CGG 0.546556 1:-74552772 None:intergenic
AATCACAGGTTTGTTGTCAA+AGG 0.550299 1:-74552984 None:intergenic
ACGAGCAACATGGATCTAGT+TGG 0.551620 1:+74552426 MsG0180004180.01.T01:CDS
AACTTGGGCTGATGAGGTGG+AGG 0.553676 1:+74552109 MsG0180004180.01.T01:CDS
GTTTATCAAGCGGAAGTCAT+CGG 0.557461 1:-74552762 None:intergenic
ACAAGTAACTTGGGCTGATG+AGG 0.559174 1:+74552103 MsG0180004180.01.T01:CDS
TGTTGTGACGGCTTATTGCG+TGG 0.561335 1:+74552140 MsG0180004180.01.T01:CDS
CGGTTATACACACTGTAATG+AGG 0.572231 1:-74552329 None:intergenic
AGAAGCAATGGAGGTGAAGA+GGG 0.572295 1:+74551609 MsG0180004180.01.T01:CDS
CATGCTTTGTTAGAAAGGGA+GGG 0.573971 1:+74552356 MsG0180004180.01.T01:CDS
AGTAACTTGGGCTGATGAGG+TGG 0.573985 1:+74552106 MsG0180004180.01.T01:CDS
TCATGCTTTGTTAGAAAGGG+AGG 0.576855 1:+74552355 MsG0180004180.01.T01:CDS
TAGAAACCTCAACAAATCAC+AGG 0.579568 1:-74552998 None:intergenic
GAAGGTGATAATGGCGAGCA+GGG 0.580967 1:+74551243 MsG0180004180.01.T01:CDS
ATGCTTTGTTAGAAAGGGAG+GGG 0.581640 1:+74552357 MsG0180004180.01.T01:CDS
CACCTGCTCAATGAATGACT+TGG 0.584077 1:-74552912 None:intergenic
AACAAACCTGTGATTTGTTG+AGG 0.586181 1:+74552992 MsG0180004180.01.T01:CDS
AGCAACATGGATCTAGTTGG+AGG 0.586815 1:+74552429 MsG0180004180.01.T01:CDS
GCGAGATAATATTTGTTGGG+AGG 0.587211 1:+74552637 MsG0180004180.01.T01:CDS
GAGGAGAAGTTATGTTGTGA+CGG 0.589001 1:+74552128 MsG0180004180.01.T01:CDS
ACATCAGCATTGGTTGCTAG+TGG 0.590714 1:+74552725 MsG0180004180.01.T01:CDS
CTGCATGCTCCCCAATATGG+TGG 0.600862 1:-74552889 None:intergenic
TAAACGCAAACAAGTAACTT+GGG 0.603412 1:+74552094 MsG0180004180.01.T01:CDS
AAACCTAGATCTGCTCGAGA+GGG 0.608007 1:+74552577 MsG0180004180.01.T01:CDS
TAAACCTAGATCTGCTCGAG+AGG 0.609475 1:+74552576 MsG0180004180.01.T01:CDS
AATTGAAGGAAGCACACTGA+AGG 0.616212 1:+74551383 MsG0180004180.01.T01:CDS
GGGACAATCTACTTGAGCAT+AGG 0.618965 1:+74552828 MsG0180004180.01.T01:CDS
TAACCTGTTGAAAGATAGAG+AGG 0.620502 1:+74552961 MsG0180004180.01.T01:CDS
ACAAATGATCCACCATATTG+GGG 0.622830 1:+74552880 MsG0180004180.01.T01:CDS
CAAGTCATTCATTGAGCAGG+TGG 0.627450 1:+74552913 MsG0180004180.01.T01:CDS
GAAAAGACCTACGAGCAACA+TGG 0.630731 1:+74552416 MsG0180004180.01.T01:CDS
TTTCTAACAAAGCATGAGCA+CGG 0.633278 1:-74552349 None:intergenic
GTGATGTATGCAGGAAACGA+TGG 0.636494 1:+74552855 MsG0180004180.01.T01:CDS
GTTGTGACGGCTTATTGCGT+GGG 0.642851 1:+74552141 MsG0180004180.01.T01:CDS
GCAACATGGATCTAGTTGGA+GGG 0.643237 1:+74552430 MsG0180004180.01.T01:CDS
TTTGGATGCTTGCTGCATGG+AGG 0.643384 1:+74552796 MsG0180004180.01.T01:CDS
AATGAATGTGAAGATGATGA+TGG 0.645642 1:+74551714 MsG0180004180.01.T01:CDS
ACTAGATCCATGTTGCTCGT+AGG 0.645688 1:-74552423 None:intergenic
TGATGTATGCAGGAAACGAT+GGG 0.648956 1:+74552856 MsG0180004180.01.T01:CDS
GAGATCAGGTAAAAGATGCG+TGG 0.653330 1:+74552480 MsG0180004180.01.T01:CDS
AATGACTTTAGAAGCAATGG+AGG 0.658645 1:+74551600 MsG0180004180.01.T01:CDS
CTTTGTTAGAAAGGGAGGGG+AGG 0.659450 1:+74552360 MsG0180004180.01.T01:CDS
AAAAGGACATTGGTCCCAAG+AGG 0.666914 1:+74552529 MsG0180004180.01.T01:CDS
AAATGTCAAATTACACCCCG+AGG 0.668903 1:+74552262 MsG0180004180.01.T01:CDS
AAATGTGAAGCTGACAACCA+AGG 0.682713 1:+74551339 MsG0180004180.01.T01:CDS
TGTGAAGATGATGATGGCCA+AGG 0.683186 1:+74551720 MsG0180004180.01.T01:CDS
TCCAACAGCCTCTAACCTCG+GGG 0.692890 1:-74552277 None:intergenic
AATGATTGTGAAGATGACCA+AGG 0.698674 1:+74551522 MsG0180004180.01.T01:CDS
GAATGTGAAGATGATGACCA+CGG 0.736913 1:+74551147 MsG0180004180.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATACCAAAACAAAAAA+AGG + Chr1:74552512-74552531 MsG0180004180.01.T01:CDS 15.0%
!!! TTGTTTTGGTATATTTTAAT+CGG - Chr1:74552508-74552527 None:intergenic 15.0%
! AAAAGCAATAAAAGTGAAGA+TGG + Chr1:74551039-74551058 MsG0180004180.01.T01:CDS 25.0%
! AAGAAGCAGAAATTAATTGA+AGG + Chr1:74551558-74551577 MsG0180004180.01.T01:CDS 25.0%
! AAGTGAAGAAAGTAAACATA+AGG + Chr1:74551671-74551690 MsG0180004180.01.T01:CDS 25.0%
! ATGAAAAAGAAGCTAATTGA+AGG + Chr1:74551369-74551388 MsG0180004180.01.T01:CDS 25.0%
! CCTTATAAAAAATCACAACA+TGG + Chr1:74552608-74552627 MsG0180004180.01.T01:CDS 25.0%
! TATATAGATTCTCATGGTTT+GGG + Chr1:74552215-74552234 MsG0180004180.01.T01:CDS 25.0%
!!! ATAAATTTTGATACTCCTCT+TGG - Chr1:74552547-74552566 None:intergenic 25.0%
!!! ATCTTCACTTTTATTGCTTT+TGG - Chr1:74551040-74551059 None:intergenic 25.0%
!!! CCATGTTGTGATTTTTTATA+AGG - Chr1:74552611-74552630 None:intergenic 25.0%
!!! TAAATTTTGATACTCCTCTT+GGG - Chr1:74552546-74552565 None:intergenic 25.0%
AACAAATGATCCACCATATT+GGG + Chr1:74552879-74552898 MsG0180004180.01.T01:CDS 30.0%
AATGAATGTGAAGATGATGA+TGG + Chr1:74551144-74551163 MsG0180004180.01.T01:CDS 30.0%
AGTGACATTATAAGCAATGA+AGG + Chr1:74551798-74551817 MsG0180004180.01.T01:CDS 30.0%
CCAAAACAAAAAAAGGACAT+TGG + Chr1:74552519-74552538 MsG0180004180.01.T01:CDS 30.0%
GAAAAAGGAAAAATTGAGTG+AGG + Chr1:74551278-74551297 MsG0180004180.01.T01:CDS 30.0%
GAAAGAAGATGAAAAAGAAG+CGG + Chr1:74551169-74551188 MsG0180004180.01.T01:intron 30.0%
GAAGAAGAAGAAACTAATTG+AGG + Chr1:74551755-74551774 MsG0180004180.01.T01:CDS 30.0%
GATAAACGCTTTATATGCTT+TGG + Chr1:74552778-74552797 MsG0180004180.01.T01:CDS 30.0%
GGGAAAGAAGAAAAAGAAAA+AGG + Chr1:74551263-74551282 MsG0180004180.01.T01:CDS 30.0%
GTATATAGATTCTCATGGTT+TGG + Chr1:74552214-74552233 MsG0180004180.01.T01:CDS 30.0%
GTTGCGAGATAATATTTGTT+GGG + Chr1:74552634-74552653 MsG0180004180.01.T01:CDS 30.0%
TAAACGCAAACAAGTAACTT+GGG + Chr1:74552094-74552113 MsG0180004180.01.T01:CDS 30.0%
TCATCATCTTCACATTCATT+TGG - Chr1:74551144-74551163 None:intergenic 30.0%
TGTTGCGAGATAATATTTGT+TGG + Chr1:74552633-74552652 MsG0180004180.01.T01:CDS 30.0%
TTGATCATTAACTTCACTGA+CGG - Chr1:74551974-74551993 None:intergenic 30.0%
TTGGAGTATATAGATTCTCA+TGG + Chr1:74552209-74552228 MsG0180004180.01.T01:CDS 30.0%
TTTGATCTTCTCATCTTCTT+CGG - Chr1:74552180-74552199 None:intergenic 30.0%
! AACAACTTTAGAAGCAATGA+AGG + Chr1:74551225-74551244 MsG0180004180.01.T01:intron 30.0%
! CATATAAAGCGTTTATCAAG+CGG - Chr1:74552775-74552794 None:intergenic 30.0%
! TCTTCTTCATTTTCTTTCCT+TGG - Chr1:74551740-74551759 None:intergenic 30.0%
! TGTAATGACTTTAGAAGCAA+TGG + Chr1:74551597-74551616 MsG0180004180.01.T01:CDS 30.0%
!! CTTTTATTGCTTTTGGTCAA+AGG - Chr1:74551033-74551052 None:intergenic 30.0%
!! TCTTTTTCATCTTCTTTCCT+TGG - Chr1:74551359-74551378 None:intergenic 30.0%
!! TCTTTTTCGTCTTTTTTCCT+TGG - Chr1:74551542-74551561 None:intergenic 30.0%
!!! CCAATGTCCTTTTTTTGTTT+TGG - Chr1:74552522-74552541 None:intergenic 30.0%
AAGAAGAAACCAAGTGAAGA+AGG + Chr1:74551468-74551487 MsG0180004180.01.T01:CDS 35.0%
AATGATTGTGAAGATGACCA+AGG + Chr1:74551522-74551541 MsG0180004180.01.T01:CDS 35.0%
AATTGAGGAAGCCAAACTTA+AGG + Chr1:74551770-74551789 MsG0180004180.01.T01:CDS 35.0%
ACAAATGATCCACCATATTG+GGG + Chr1:74552880-74552899 MsG0180004180.01.T01:CDS 35.0%
AGAAGCAATGAAGGTGATAA+TGG + Chr1:74551234-74551253 MsG0180004180.01.T01:intron 35.0%
CTAAACGCAAACAAGTAACT+TGG + Chr1:74552093-74552112 MsG0180004180.01.T01:CDS 35.0%
CTCTATCTTTCAACAGGTTA+GGG - Chr1:74552961-74552980 None:intergenic 35.0%
GAACAAATGATCCACCATAT+TGG + Chr1:74552878-74552897 MsG0180004180.01.T01:CDS 35.0%
GTCACTATACTCCTTAAGTT+TGG - Chr1:74551784-74551803 None:intergenic 35.0%
GTCACTGAAGTTAATGATGA+AGG + Chr1:74551843-74551862 MsG0180004180.01.T01:intron 35.0%
GTCAGTGAAGTTAATGATCA+AGG + Chr1:74551973-74551992 MsG0180004180.01.T01:intron 35.0%
GTTTCATTATGTGCACAGTT+AGG - Chr1:74552047-74552066 None:intergenic 35.0%
TAACCTGTTGAAAGATAGAG+AGG + Chr1:74552961-74552980 MsG0180004180.01.T01:CDS 35.0%
TCAATAAATTCCAGCTCTTC+AGG - Chr1:74552398-74552417 None:intergenic 35.0%
TCTCTATCTTTCAACAGGTT+AGG - Chr1:74552962-74552981 None:intergenic 35.0%
TTGATCTTCTCATCTTCTTC+GGG - Chr1:74552179-74552198 None:intergenic 35.0%
TTTCTAACAAAGCATGAGCA+CGG - Chr1:74552352-74552371 None:intergenic 35.0%
! AATATTTGTTGGGAGGCAAT+TGG + Chr1:74552644-74552663 MsG0180004180.01.T01:CDS 35.0%
! AATGACTTTAGAAGCAATGG+AGG + Chr1:74551600-74551619 MsG0180004180.01.T01:CDS 35.0%
! AGAAGCAATGATGATGAAGA+TGG + Chr1:74551420-74551439 MsG0180004180.01.T01:intron 35.0%
! TGCTCATGCTTTGTTAGAAA+GGG + Chr1:74552352-74552371 MsG0180004180.01.T01:CDS 35.0%
!! AATCACAGGTTTGTTGTCAA+AGG - Chr1:74552987-74553006 None:intergenic 35.0%
!! TCTTTTTCATCTTCTTTCCG+TGG - Chr1:74551167-74551186 None:intergenic 35.0%
AAATGTCAAATTACACCCCG+AGG + Chr1:74552262-74552281 MsG0180004180.01.T01:CDS 40.0%
AAATGTGAAGCTGACAACCA+AGG + Chr1:74551339-74551358 MsG0180004180.01.T01:CDS 40.0%
AATCTACTTGAGCATAGGTC+TGG + Chr1:74552833-74552852 MsG0180004180.01.T01:CDS 40.0%
AATGAAACTCCTGGCAATGA+AGG + Chr1:74551928-74551947 MsG0180004180.01.T01:intron 40.0%
ACTCCTAACTCTGCACATAA+TGG + Chr1:74552065-74552084 MsG0180004180.01.T01:CDS 40.0%
AGTTGAAGGAAACACACTTG+AGG + Chr1:74551197-74551216 MsG0180004180.01.T01:intron 40.0%
CAGATCAGCTACATTGCTTT+CGG - Chr1:74551010-74551029 None:intergenic 40.0%
CGAGCAATTAACATCAGCAT+TGG + Chr1:74552715-74552734 MsG0180004180.01.T01:CDS 40.0%
CGGTTATACACACTGTAATG+AGG - Chr1:74552332-74552351 None:intergenic 40.0%
GAATGTGAAGATGATGACCA+CGG + Chr1:74551147-74551166 MsG0180004180.01.T01:CDS 40.0%
GAGGAGAAGTTATGTTGTGA+CGG + Chr1:74552128-74552147 MsG0180004180.01.T01:CDS 40.0%
GAGTGAGGAAAGCAAACATA+AGG + Chr1:74551293-74551312 MsG0180004180.01.T01:CDS 40.0%
GTTCCATTATGTGCAGAGTT+AGG - Chr1:74552071-74552090 None:intergenic 40.0%
GTTTATCAAGCGGAAGTCAT+CGG - Chr1:74552765-74552784 None:intergenic 40.0%
GTTTCATTACGTGCACAGTT+AGG - Chr1:74551916-74551935 None:intergenic 40.0%
TGATGTATGCAGGAAACGAT+GGG + Chr1:74552856-74552875 MsG0180004180.01.T01:CDS 40.0%
TTATGTGTGCCTTCTTCACT+TGG - Chr1:74551480-74551499 None:intergenic 40.0%
TTTGGGTAAAAGTCGAGATC+AGG + Chr1:74552466-74552485 MsG0180004180.01.T01:CDS 40.0%
! AAGTGAAGAAGGCACACATA+AGG + Chr1:74551479-74551498 MsG0180004180.01.T01:CDS 40.0%
! AATTGAAGGAAGCACACTGA+AGG + Chr1:74551383-74551402 MsG0180004180.01.T01:CDS 40.0%
! ATGCTTTGTTAGAAAGGGAG+GGG + Chr1:74552357-74552376 MsG0180004180.01.T01:CDS 40.0%
! CATGCTTTGTTAGAAAGGGA+GGG + Chr1:74552356-74552375 MsG0180004180.01.T01:CDS 40.0%
! GAAGATCAAAGCAGCTGTTT+TGG + Chr1:74552190-74552209 MsG0180004180.01.T01:CDS 40.0%
! GCGAGATAATATTTGTTGGG+AGG + Chr1:74552637-74552656 MsG0180004180.01.T01:CDS 40.0%
! GTGCTCATGCTTTGTTAGAA+AGG + Chr1:74552351-74552370 MsG0180004180.01.T01:CDS 40.0%
! TCATGCTTTGTTAGAAAGGG+AGG + Chr1:74552355-74552374 MsG0180004180.01.T01:CDS 40.0%
AAAAGGACATTGGTCCCAAG+AGG + Chr1:74552529-74552548 MsG0180004180.01.T01:CDS 45.0%
AAAAGTGAAGATGGCGAGCA+AGG + Chr1:74551048-74551067 MsG0180004180.01.T01:CDS 45.0%
AAACCTAGATCTGCTCGAGA+GGG + Chr1:74552577-74552596 MsG0180004180.01.T01:CDS 45.0%
AAATTACACCCCGAGGTTAG+AGG + Chr1:74552269-74552288 MsG0180004180.01.T01:CDS 45.0%
AAGAAGCGGAAGCTAGTTGA+AGG + Chr1:74551183-74551202 MsG0180004180.01.T01:intron 45.0%
ACAAGTAACTTGGGCTGATG+AGG + Chr1:74552103-74552122 MsG0180004180.01.T01:CDS 45.0%
ACGAGCAACATGGATCTAGT+TGG + Chr1:74552426-74552445 MsG0180004180.01.T01:CDS 45.0%
ACTAGATCCATGTTGCTCGT+AGG - Chr1:74552426-74552445 None:intergenic 45.0%
AGAAGCAATGGAGGTGAAGA+GGG + Chr1:74551609-74551628 MsG0180004180.01.T01:CDS 45.0%
AGCAACATGGATCTAGTTGG+AGG + Chr1:74552429-74552448 MsG0180004180.01.T01:CDS 45.0%
AGCCAAGTCATTCATTGAGC+AGG + Chr1:74552910-74552929 MsG0180004180.01.T01:CDS 45.0%
AGGCCTCTCTATCTTTCAAC+AGG - Chr1:74552967-74552986 None:intergenic 45.0%
CAAGTCATTCATTGAGCAGG+TGG + Chr1:74552913-74552932 MsG0180004180.01.T01:CDS 45.0%
CACCTGCTCAATGAATGACT+TGG - Chr1:74552915-74552934 None:intergenic 45.0%
GAAAAGACCTACGAGCAACA+TGG + Chr1:74552416-74552435 MsG0180004180.01.T01:CDS 45.0%
GAAGGAAACACACTTGAGGA+GGG + Chr1:74551201-74551220 MsG0180004180.01.T01:intron 45.0%
GAGATCAGGTAAAAGATGCG+TGG + Chr1:74552480-74552499 MsG0180004180.01.T01:CDS 45.0%
GCAACATGGATCTAGTTGGA+GGG + Chr1:74552430-74552449 MsG0180004180.01.T01:CDS 45.0%
GGAGGCAATTGGTCACAAAT+TGG + Chr1:74552655-74552674 MsG0180004180.01.T01:CDS 45.0%
GGGACAATCTACTTGAGCAT+AGG + Chr1:74552828-74552847 MsG0180004180.01.T01:CDS 45.0%
GGGAGATGAAGGTCTTGATA+TGG + Chr1:74552235-74552254 MsG0180004180.01.T01:CDS 45.0%
GTGATGTATGCAGGAAACGA+TGG + Chr1:74552855-74552874 MsG0180004180.01.T01:CDS 45.0%
TAAACCTAGATCTGCTCGAG+AGG + Chr1:74552576-74552595 MsG0180004180.01.T01:CDS 45.0%
TAGAAGCAATGGAGGTGAAG+AGG + Chr1:74551608-74551627 MsG0180004180.01.T01:CDS 45.0%
TGAAGGAAACACACTTGAGG+AGG + Chr1:74551200-74551219 MsG0180004180.01.T01:intron 45.0%
TGTGCACGTAATGAAACTCC+TGG + Chr1:74551919-74551938 MsG0180004180.01.T01:intron 45.0%
TTTCCAACAGCCTCTAACCT+CGG - Chr1:74552282-74552301 None:intergenic 45.0%
! ATAGGTCTGGTGATGTATGC+AGG + Chr1:74552846-74552865 MsG0180004180.01.T01:CDS 45.0%
! CATTGGTTGCTAGTGGTGAT+TGG + Chr1:74552732-74552751 MsG0180004180.01.T01:CDS 45.0%
! GTGCATTTTGCTGCAAGAAG+TGG + Chr1:74552690-74552709 MsG0180004180.01.T01:CDS 45.0%
! TCGACTTTTACCCAAAGCGT+CGG - Chr1:74552462-74552481 None:intergenic 45.0%
! TCGCAAAAAGCATACCTGAG+AGG + Chr1:74552306-74552325 MsG0180004180.01.T01:CDS 45.0%
! TCTCATGGTTTGGGAGATGA+AGG + Chr1:74552224-74552243 MsG0180004180.01.T01:CDS 45.0%
!! ACATCAGCATTGGTTGCTAG+TGG + Chr1:74552725-74552744 MsG0180004180.01.T01:CDS 45.0%
!! TGTGAAGATGATGATGGCCA+AGG + Chr1:74551720-74551739 MsG0180004180.01.T01:CDS 45.0%
ACACTGTAATGAGGCCTCTC+AGG - Chr1:74552323-74552342 None:intergenic 50.0%
ACGGCTTATTGCGTGGGAAA+AGG + Chr1:74552147-74552166 MsG0180004180.01.T01:CDS 50.0%
AGTAACTTGGGCTGATGAGG+TGG + Chr1:74552106-74552125 MsG0180004180.01.T01:CDS 50.0%
CATTGAGCAGGTGGAAGTTC+TGG + Chr1:74552922-74552941 MsG0180004180.01.T01:CDS 50.0%
CTTTGTTAGAAAGGGAGGGG+AGG + Chr1:74552360-74552379 MsG0180004180.01.T01:CDS 50.0%
GTTGTGACGGCTTATTGCGT+GGG + Chr1:74552141-74552160 MsG0180004180.01.T01:CDS 50.0%
TAAGTGGACACCTGAAGAGC+TGG + Chr1:74552385-74552404 MsG0180004180.01.T01:CDS 50.0%
TCAGCATCACCTTCATTGCC+AGG - Chr1:74551940-74551959 None:intergenic 50.0%
TGTTGTGACGGCTTATTGCG+TGG + Chr1:74552140-74552159 MsG0180004180.01.T01:CDS 50.0%
TTCCAACAGCCTCTAACCTC+GGG - Chr1:74552281-74552300 None:intergenic 50.0%
! TGCTTTGGATGCTTGCTGCA+TGG + Chr1:74552793-74552812 MsG0180004180.01.T01:CDS 50.0%
! TTTGGATGCTTGCTGCATGG+AGG + Chr1:74552796-74552815 MsG0180004180.01.T01:CDS 50.0%
!! GAAGGTGATAATGGCGAGCA+GGG + Chr1:74551243-74551262 MsG0180004180.01.T01:CDS 50.0%
!! TGAAGGTGATAATGGCGAGC+AGG + Chr1:74551242-74551261 MsG0180004180.01.T01:CDS 50.0%
AACTTGGGCTGATGAGGTGG+AGG + Chr1:74552109-74552128 MsG0180004180.01.T01:CDS 55.0%
CTGCATGCTCCCCAATATGG+TGG - Chr1:74552892-74552911 None:intergenic 55.0%
CTGCATGGAGGAGGTAGACT+GGG + Chr1:74552808-74552827 MsG0180004180.01.T01:CDS 55.0%
TAGCCCTCTCGAGCAGATCT+AGG - Chr1:74552583-74552602 None:intergenic 55.0%
TCCAACAGCCTCTAACCTCG+GGG - Chr1:74552280-74552299 None:intergenic 55.0%
TGGCTGCATGCTCCCCAATA+TGG - Chr1:74552895-74552914 None:intergenic 55.0%
! AAAGGGAGGGGAGGTGTAAG+TGG + Chr1:74552369-74552388 MsG0180004180.01.T01:CDS 55.0%
ACCCCGAGGTTAGAGGCTGT+TGG + Chr1:74552276-74552295 MsG0180004180.01.T01:CDS 60.0%
AGGGCAGTAGCCGACGCTTT+GGG + Chr1:74552449-74552468 MsG0180004180.01.T01:CDS 60.0%
GCTGCATGGAGGAGGTAGAC+TGG + Chr1:74552807-74552826 MsG0180004180.01.T01:CDS 60.0%
! GGATGCTTGCTGCATGGAGG+AGG + Chr1:74552799-74552818 MsG0180004180.01.T01:CDS 60.0%
GAGGGCAGTAGCCGACGCTT+TGG + Chr1:74552448-74552467 MsG0180004180.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 74551003 74553012 74551003 ID=MsG0180004180.01;Name=MsG0180004180.01
Chr1 mRNA 74551003 74553012 74551003 ID=MsG0180004180.01.T01;Parent=MsG0180004180.01;Name=MsG0180004180.01.T01;_AED=0.30;_eAED=0.30;_QI=0|0|0|1|0|0|4|0|581
Chr1 exon 74551003 74551172 74551003 ID=MsG0180004180.01.T01:exon:25129;Parent=MsG0180004180.01.T01
Chr1 exon 74551236 74551408 74551236 ID=MsG0180004180.01.T01:exon:25130;Parent=MsG0180004180.01.T01
Chr1 exon 74551439 74551828 74551439 ID=MsG0180004180.01.T01:exon:25131;Parent=MsG0180004180.01.T01
Chr1 exon 74552000 74553012 74552000 ID=MsG0180004180.01.T01:exon:25132;Parent=MsG0180004180.01.T01
Chr1 CDS 74551003 74551172 74551003 ID=MsG0180004180.01.T01:cds;Parent=MsG0180004180.01.T01
Chr1 CDS 74551236 74551408 74551236 ID=MsG0180004180.01.T01:cds;Parent=MsG0180004180.01.T01
Chr1 CDS 74551439 74551828 74551439 ID=MsG0180004180.01.T01:cds;Parent=MsG0180004180.01.T01
Chr1 CDS 74552000 74553012 74552000 ID=MsG0180004180.01.T01:cds;Parent=MsG0180004180.01.T01
Gene Sequence

>MsG0180004180.01.T01

ATGTCCGAAAGCAATGTAGCTGATCTGCCTTTGACCAAAAGCAATAAAAGTGAAGATGGCGAGCAAGGCAAAAAGAAAAAGAAAAAGAAGAAGAAACTGAGTGAAGAAAGCAATCATAAGAAGTATAATGAGTTCAAAAGCAATGAATGTGAAGATGATGACCACGGAAAAAGCAATGAAGGTGATAATGGCGAGCAGGGAAAGAAGAAAAAGAAAAAGGAAAAATTGAGTGAGGAAAGCAAACATAAGGAGTATAACGAGTTCAAAAGTAACAAATGTGAAGCTGACAACCAAGGAAAGAAGATGAAAAAGAAGCTAATTGAAGGAAGCACACTGAAGGAATATGGTGAGCGAGAGAAAAAGATGAAGAAAAAGAAGAAACCAAGTGAAGAAGGCACACATAAGGAGTATAGTGAGTTCAAAAGCAATGATTGTGAAGATGACCAAGGAAAAAAGACGAAAAAGAAGCAGAAATTAATTGAAGGAAACACACTTAATGAGTGTAATGACTTTAGAAGCAATGGAGGTGAAGAGGGTGATCAAGACAAGAAGATGAAGAAAAAGAAGAAGAAACTAAGTGAAGAAAGTAAACATAAGGAGTATAGCAAGTTTGAACCAAATGAATGTGAAGATGATGATGGCCAAGGAAAGAAAATGAAGAAGAAGAAGAAACTAATTGAGGAAGCCAAACTTAAGGAGTATAGTGACATTATAAGCAATGAAGGTGATGCTGAAGATGAAGAAAAAAAGAAAGCAAAGACAGTAACAAGCGAGTCTCCTAACTGTGCACATAATGAAACTCCTAACTCTGCACATAATGGAACATCTAAACGCAAACAAGTAACTTGGGCTGATGAGGTGGAGGAGAAGTTATGTTGTGACGGCTTATTGCGTGGGAAAAGGTATACACCCGAAGAAGATGAGAAGATCAAAGCAGCTGTTTTGGAGTATATAGATTCTCATGGTTTGGGAGATGAAGGTCTTGATATGGTTCTAAATGTCAAATTACACCCCGAGGTTAGAGGCTGTTGGAAAGAAATCGCAAAAAGCATACCTGAGAGGCCTCATTACAGTGTGTATAACCGTGCTCATGCTTTGTTAGAAAGGGAGGGGAGGTGTAAGTGGACACCTGAAGAGCTGGAATTTATTGAAAAGACCTACGAGCAACATGGATCTAGTTGGAGGGCAGTAGCCGACGCTTTGGGTAAAAGTCGAGATCAGGTAAAAGATGCGTGGCGCCGATTAAAATATACCAAAACAAAAAAAGGACATTGGTCCCAAGAGGAGTATCAAAATTTATTTAACTTAGTAAACCTAGATCTGCTCGAGAGGGCTAAAGAGCCTTATAAAAAATCACAACATGGTATGTTGCGAGATAATATTTGTTGGGAGGCAATTGGTCACAAATTGGAGACTCGAAACAGTGCATTTTGCTGCAAGAAGTGGTACGAGCAATTAACATCAGCATTGGTTGCTAGTGGTGATTGGTGTGATACCGATGACTTCCGCTTGATAAACGCTTTATATGCTTTGGATGCTTGCTGCATGGAGGAGGTAGACTGGGACAATCTACTTGAGCATAGGTCTGGTGATGTATGCAGGAAACGATGGGAACAAATGATCCACCATATTGGGGAGCATGCAGCCAAGTCATTCATTGAGCAGGTGGAAGTTCTGGCAAAGAGATTCTGCCCTAACCTGTTGAAAGATAGAGAGGCCTTTGACAACAAACCTGTGATTTGTTGA

Protein sequence

>MsG0180004180.01.T01

MSESNVADLPLTKSNKSEDGEQGKKKKKKKKKLSEESNHKKYNEFKSNECEDDDHGKSNEGDNGEQGKKKKKKEKLSEESKHKEYNEFKSNKCEADNQGKKMKKKLIEGSTLKEYGEREKKMKKKKKPSEEGTHKEYSEFKSNDCEDDQGKKTKKKQKLIEGNTLNECNDFRSNGGEEGDQDKKMKKKKKKLSEESKHKEYSKFEPNECEDDDGQGKKMKKKKKLIEEAKLKEYSDIISNEGDAEDEEKKKAKTVTSESPNCAHNETPNSAHNGTSKRKQVTWADEVEEKLCCDGLLRGKRYTPEEDEKIKAAVLEYIDSHGLGDEGLDMVLNVKLHPEVRGCWKEIAKSIPERPHYSVYNRAHALLEREGRCKWTPEELEFIEKTYEQHGSSWRAVADALGKSRDQVKDAWRRLKYTKTKKGHWSQEEYQNLFNLVNLDLLERAKEPYKKSQHGMLRDNICWEAIGHKLETRNSAFCCKKWYEQLTSALVASGDWCDTDDFRLINALYALDACCMEEVDWDNLLEHRSGDVCRKRWEQMIHHIGEHAAKSFIEQVEVLAKRFCPNLLKDREAFDNKPVIC*