AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180006155.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180006155.01.T01 MTR_1g115375 91.990 412 17 4 3 413 94 490 0.0 678
MsG0180006155.01.T01 MTR_4g104470 28.161 174 113 6 133 298 123 292 8.91e-15 75.1
MsG0180006155.01.T01 MTR_4g074930 25.248 202 131 6 117 302 362 559 2.59e-14 75.1
MsG0180006155.01.T01 MTR_4g074930 25.248 202 131 6 117 302 327 524 2.82e-14 75.1
MsG0180006155.01.T01 MTR_1g045510 30.636 173 115 4 129 298 110 280 6.14e-14 72.4
MsG0180006155.01.T01 MTR_3g075500 29.213 178 109 6 133 298 110 282 1.78e-12 67.8
MsG0180006155.01.T01 MTR_2g022950 27.225 191 131 5 127 311 55 243 9.32e-12 65.5
MsG0180006155.01.T01 MTR_7g106440 25.137 183 124 5 129 298 106 288 1.04e-11 65.9
MsG0180006155.01.T01 MTR_1g056520 26.630 184 121 7 133 305 109 289 2.62e-11 64.7
MsG0180006155.01.T01 MTR_3g095230 23.164 177 124 3 134 298 217 393 6.42e-11 64.7
MsG0180006155.01.T01 MTR_3g095230 23.164 177 124 3 134 298 217 393 6.62e-11 64.7
MsG0180006155.01.T01 MTR_3g080130 39.744 78 45 2 224 299 36 113 9.39e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180006155.01.T01 AT3G55340 43.003 293 126 7 121 403 150 411 2.66e-69 230
MsG0180006155.01.T01 AT3G18610 26.178 191 128 5 121 302 344 530 2.42e-14 75.5
MsG0180006155.01.T01 AT3G18610 26.178 191 128 5 121 302 314 500 2.55e-14 75.1
MsG0180006155.01.T01 AT3G18610 26.178 191 128 5 121 302 374 560 3.00e-14 75.1
MsG0180006155.01.T01 AT1G60000 29.651 172 117 4 130 298 83 253 2.10e-13 70.5
MsG0180006155.01.T01 AT4G24770 28.655 171 116 5 133 298 151 320 3.02e-13 70.9
MsG0180006155.01.T01 AT4G24770 28.655 171 116 5 133 298 151 320 3.02e-13 70.9
MsG0180006155.01.T01 AT5G50250 28.070 171 117 5 133 298 114 283 1.13e-12 68.6
MsG0180006155.01.T01 AT1G01080 27.647 170 110 4 133 289 109 278 5.17e-12 66.6
MsG0180006155.01.T01 AT1G01080 27.326 172 112 4 133 291 109 280 1.27e-11 65.5
MsG0180006155.01.T01 AT2G16940 26.064 188 125 5 134 308 184 370 1.78e-11 66.2
MsG0180006155.01.T01 AT2G16940 26.064 188 125 5 134 308 233 419 5.54e-11 64.7
MsG0180006155.01.T01 AT1G01080 27.168 173 112 5 133 291 109 281 7.35e-11 63.2

Find 119 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATATCCCTCCTTCATTTC+TGG 0.108973 1:+100784247 None:intergenic
ATCATTCTCCTCTGCAATTT+TGG 0.128702 1:+100786257 None:intergenic
CCTCACCTTAAAACTAATTA+TGG 0.226944 1:+100784731 None:intergenic
ATTCAGCGTTAATCTGGTTT+AGG 0.239346 1:+100786762 None:intergenic
GAAGCAGCTATTTGTGGGTT+TGG 0.284241 1:+100783689 None:intergenic
TTCCTGACACTGGCAAGTTT+AGG 0.286520 1:-100784761 MsG0180006155.01.T01:CDS
TCCTGACACTGGCAAGTTTA+GGG 0.287968 1:-100784760 MsG0180006155.01.T01:CDS
AAGAAGAAGAAGAATGAAAA+TGG 0.309818 1:-100786477 MsG0180006155.01.T01:CDS
TTCAGCGTTAATCTGGTTTA+GGG 0.321694 1:+100786763 None:intergenic
AAGCAGCTATTTGTGGGTTT+GGG 0.330204 1:+100783690 None:intergenic
CCTTCATTTCTGGAGTAAAT+CGG 0.343732 1:+100784257 None:intergenic
TTTGGTTCCATCATCTTCAT+TGG 0.353266 1:+100786619 None:intergenic
GATTAGATTCAGCGTTAATC+TGG 0.363787 1:+100786756 None:intergenic
ATGAAAATGGTGTGGCTAAT+GGG 0.368284 1:-100786464 MsG0180006155.01.T01:CDS
GCAGGTTCCAAACCAGTTGC+AGG 0.384369 1:-100783977 MsG0180006155.01.T01:CDS
TGCTACGGGTGTCGTCAAAA+AGG 0.385303 1:-100783731 MsG0180006155.01.T01:CDS
CTTTATATCAAAGACTGAAA+AGG 0.385355 1:+100783513 None:intergenic
TGTTCATGCAGTCAAGAAAA+TGG 0.388079 1:-100784897 MsG0180006155.01.T01:intron
TTTAGAACCTGCAACTGGTT+TGG 0.388692 1:+100783970 None:intergenic
GTTGCAAAGGTCGAAGCTTT+CGG 0.389760 1:+100786651 None:intergenic
TTTCCACTTGCAACAGAACT+TGG 0.391674 1:+100783770 None:intergenic
AACAAAACTGCAGAGGAAAA+TGG 0.393203 1:-100786285 MsG0180006155.01.T01:CDS
TAATGGGGTTGTTGTTGTTA+AGG 0.395655 1:-100786376 MsG0180006155.01.T01:CDS
GTCATCCTCACTTGAATAGT+AGG 0.395730 1:+100784839 None:intergenic
ACACAATCAAGCCGTCTTCA+TGG 0.402597 1:+100783607 None:intergenic
AATGAAAATGGTGTGGCTAA+TGG 0.404188 1:-100786465 MsG0180006155.01.T01:CDS
ATCAAGAGCCAATGCTCGTT+TGG 0.407420 1:+100784422 None:intergenic
CCCCTAAACTTGCCAGTGTC+AGG 0.419850 1:+100784759 None:intergenic
AGTGATGATGATGTGGCTAA+TGG 0.422711 1:-100786429 MsG0180006155.01.T01:CDS
ACTGGTTTGGAACCTGCAAC+TGG 0.424778 1:+100783983 None:intergenic
CTTAGACAAAATGGGTTTGT+TGG 0.429669 1:+100786685 None:intergenic
AAACGAGCATTGGCTCTTGA+TGG 0.432294 1:-100784420 MsG0180006155.01.T01:CDS
GAAATTGGAAATGAGGGTTT+CGG 0.434366 1:-100786590 MsG0180006155.01.T01:five_prime_UTR
TCTTGTTTGGAAGGCCTGTC+AGG 0.436677 1:-100784036 MsG0180006155.01.T01:CDS
TTTATATCAAAGACTGAAAA+GGG 0.437811 1:+100783514 None:intergenic
CTTCATTTCTGGAGTAAATC+GGG 0.442986 1:+100784258 None:intergenic
TTGGACCAAAGTGTCTTGTT+TGG 0.444576 1:-100784049 MsG0180006155.01.T01:CDS
AGATGAATCAATTGAAAAGA+AGG 0.446995 1:-100786523 MsG0180006155.01.T01:CDS
CAAGTGGAAAGAGGAAGAAT+AGG 0.455940 1:-100783757 MsG0180006155.01.T01:CDS
AATGATGATAGTGTTGCTAA+TGG 0.456928 1:-100786393 MsG0180006155.01.T01:CDS
AGAGAGTTTGAAGAAGAAGA+AGG 0.458401 1:+100786731 None:intergenic
ATGATGATAGTGTTGCTAAT+GGG 0.460576 1:-100786392 MsG0180006155.01.T01:CDS
CTTCTCAAATTGCAATGTAA+AGG 0.461827 1:-100784167 MsG0180006155.01.T01:CDS
GTTGCTTGAGTTGCTTTACA+TGG 0.466789 1:+100784280 None:intergenic
GTGATGATGATGTGGCTAAT+GGG 0.468531 1:-100786428 MsG0180006155.01.T01:CDS
CCTGGTTTAGAACCTGCAAC+TGG 0.468577 1:+100783965 None:intergenic
TCACGGCGTGAGATTTAGAA+TGG 0.477593 1:-100786831 MsG0180006155.01.T01:five_prime_UTR
AATGCCACAATCTACGGTAT+TGG 0.479144 1:-100786217 MsG0180006155.01.T01:CDS
CAGTAGAAGCAGCTATTTGT+GGG 0.480573 1:+100783684 None:intergenic
CTTGGTATGGACAAGGAAAC+GGG 0.485470 1:-100784136 MsG0180006155.01.T01:CDS
GCAGTTGAGCAACCAGGTGC+AGG 0.486239 1:-100783815 MsG0180006155.01.T01:CDS
ACTTGGTATGGACAAGGAAA+CGG 0.498089 1:-100784137 MsG0180006155.01.T01:CDS
ACCAAAGTGTCTTGTTTGGA+AGG 0.502106 1:-100784045 MsG0180006155.01.T01:CDS
AGCAGCGGCCAAACGAGCAT+TGG 0.504558 1:-100784430 MsG0180006155.01.T01:CDS
GCTACGAAAGTTTATGTTGG+AGG 0.506031 1:-100784867 MsG0180006155.01.T01:CDS
AACGAGGAAATTGGAAATGA+GGG 0.508780 1:-100786596 MsG0180006155.01.T01:five_prime_UTR
AAACCCAGTGTTGAAATTCA+CGG 0.509640 1:-100786848 MsG0180006155.01.T01:five_prime_UTR
ACTCAATCCAATGAAGATGA+TGG 0.516122 1:-100786626 MsG0180006155.01.T01:five_prime_UTR
CCGATTTACTCCAGAAATGA+AGG 0.517469 1:-100784257 MsG0180006155.01.T01:CDS
AAACGAGGAAATTGGAAATG+AGG 0.518572 1:-100786597 MsG0180006155.01.T01:five_prime_UTR
TACTGCACTTTGAAGCATGC+AGG 0.519924 1:-100783666 MsG0180006155.01.T01:exon
AGAGGAAATGCCACAATCTA+CGG 0.521392 1:-100786223 MsG0180006155.01.T01:CDS
GCCTTCCAAACAAGACACTT+TGG 0.522248 1:+100784044 None:intergenic
ATATCGTTCCGCCATGAAGA+CGG 0.522923 1:-100783618 MsG0180006155.01.T01:three_prime_UTR
TTGGATTGAGTTTGTTGCAA+AGG 0.528061 1:+100786638 None:intergenic
CTTGTCCATACCAAGTCGTA+TGG 0.528600 1:+100784144 None:intergenic
AAAGGCCATACGACTTGGTA+TGG 0.529863 1:-100784149 MsG0180006155.01.T01:CDS
GCAGTAGAAGCAGCTATTTG+TGG 0.531101 1:+100783683 None:intergenic
CATGCAATTAATTTCAGTGA+TGG 0.534530 1:+100784788 None:intergenic
GGATATAATAGAATATATGT+TGG 0.535480 1:-100784232 MsG0180006155.01.T01:CDS
ACGCCGTGAATTTCAACACT+GGG 0.541240 1:+100786845 None:intergenic
CCTGACACTGGCAAGTTTAG+GGG 0.542201 1:-100784759 MsG0180006155.01.T01:CDS
GAGTTTGAAGAAGAAGAAGG+TGG 0.543166 1:+100786734 None:intergenic
GTTGCTACGAAAGTTTATGT+TGG 0.543964 1:-100784870 MsG0180006155.01.T01:CDS
GAACTTGGTTGCTCAACAGT+TGG 0.545048 1:+100783785 None:intergenic
ACTGAAGACAGCACTTGCAT+TGG 0.546883 1:-100784068 MsG0180006155.01.T01:CDS
AGACAAAATGGGTTTGTTGG+TGG 0.554333 1:+100786688 None:intergenic
GCAGGTTCTAAACCAGGTGC+AGG 0.555413 1:-100783959 MsG0180006155.01.T01:CDS
CAACCAAGTTCTGTTGCAAG+TGG 0.556840 1:-100783773 MsG0180006155.01.T01:CDS
ACCGCACAACTTATCCTGAC+AGG 0.558651 1:+100784022 None:intergenic
AACTGCAGAGGAAAATGGTA+AGG 0.561255 1:-100786280 MsG0180006155.01.T01:CDS
TCATCCTCACTTGAATAGTA+GGG 0.561329 1:+100784840 None:intergenic
TCATTTGCAGTTGAGCAACC+AGG 0.564422 1:-100783821 MsG0180006155.01.T01:CDS
AATGTAAAGGCCATACGACT+TGG 0.565382 1:-100784154 MsG0180006155.01.T01:CDS
CTGACACTGGCAAGTTTAGG+GGG 0.568128 1:-100784758 MsG0180006155.01.T01:CDS
AGGAAGAATAGGATGTGCTA+CGG 0.568628 1:-100783746 MsG0180006155.01.T01:CDS
TATATGTTGGAAGTCTGTCA+TGG 0.574488 1:-100784219 MsG0180006155.01.T01:CDS
AAATAACAGAGGAAGAACTA+AGG 0.575629 1:-100784195 MsG0180006155.01.T01:CDS
AAGGAAACGGGAGAATTTCG+AGG 0.577973 1:-100784124 MsG0180006155.01.T01:CDS
CCAGTTGCAGGTTCTAAACC+AGG 0.578088 1:-100783965 MsG0180006155.01.T01:CDS
CACGCCGTGAATTTCAACAC+TGG 0.579159 1:+100786844 None:intergenic
TGAAAATGGTGTGGCTAATG+GGG 0.585256 1:-100786463 MsG0180006155.01.T01:CDS
TGATGATGATGTGGCTAATG+GGG 0.585907 1:-100786427 MsG0180006155.01.T01:CDS
GTTCTGTTGCAAGTGGAAAG+AGG 0.588009 1:-100783766 MsG0180006155.01.T01:CDS
AAAGAAGAACAAAACTGCAG+AGG 0.588575 1:-100786292 MsG0180006155.01.T01:CDS
CTAACACTACTACCACTACA+AGG 0.592037 1:-100786194 MsG0180006155.01.T01:intron
TGATGATAGTGTTGCTAATG+GGG 0.592050 1:-100786391 MsG0180006155.01.T01:CDS
ATATGTTGGAAGTCTGTCAT+GGG 0.601270 1:-100784218 MsG0180006155.01.T01:CDS
GGAAGAATAGGATGTGCTAC+GGG 0.614801 1:-100783745 MsG0180006155.01.T01:CDS
GAAGAAGAATGAAAATGGTG+TGG 0.615435 1:-100786472 MsG0180006155.01.T01:CDS
AAATAGGACAGTATCTGTAG+TGG 0.615605 1:-100783566 MsG0180006155.01.T01:three_prime_UTR
GTTGAGCAACCAGGTGCAGG+AGG 0.622181 1:-100783812 MsG0180006155.01.T01:CDS
ATAGATAAATCACCTTGTAG+TGG 0.629770 1:+100786182 None:intergenic
GAATGATTCTAATCATCAAG+AGG 0.630329 1:-100786241 MsG0180006155.01.T01:CDS
TTAGCCAATACCGTAGATTG+TGG 0.631628 1:+100786213 None:intergenic
TTAAAGTTACATACATACAC+AGG 0.638610 1:-100786965 None:intergenic
CATACGACTTGGTATGGACA+AGG 0.655913 1:-100784143 MsG0180006155.01.T01:CDS
TTTACTCCAGAAATGAAGGA+GGG 0.658643 1:-100784253 MsG0180006155.01.T01:CDS
GCCTGTCAGGATAAGTTGTG+CGG 0.659328 1:-100784023 MsG0180006155.01.T01:CDS
ATTTACTCCAGAAATGAAGG+AGG 0.660456 1:-100784254 MsG0180006155.01.T01:CDS
GAAGAAGAGTGATGATGATG+TGG 0.667326 1:-100786436 MsG0180006155.01.T01:CDS
TGGTAAGGCCAAAATTGCAG+AGG 0.668394 1:-100786265 MsG0180006155.01.T01:CDS
AGGAAACGGGAGAATTTCGA+GGG 0.671275 1:-100784123 MsG0180006155.01.T01:CDS
AATTCCCTACTATTCAAGTG+AGG 0.689712 1:-100784844 MsG0180006155.01.T01:CDS
AAAACAAAAGCTTCACGAGG+CGG 0.690631 1:-100786936 MsG0180006155.01.T01:five_prime_UTR
TCTGTCATGGGAAATAACAG+AGG 0.691463 1:-100784206 MsG0180006155.01.T01:CDS
CTTCCTGCAGACTGAAGCAG+CGG 0.704303 1:-100784445 MsG0180006155.01.T01:intron
ACCAAAACAAAAGCTTCACG+AGG 0.714675 1:-100786939 MsG0180006155.01.T01:five_prime_UTR
CAATCAAGCCGTCTTCATGG+CGG 0.743839 1:+100783610 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTGAAAAAAACAAAAT+AGG - Chr1:100786826-100786845 MsG0180006155.01.T01:five_prime_UTR 10.0%
!! AGATAATCAATTAAAAAACT+GGG + Chr1:100785482-100785501 None:intergenic 15.0%
!! ATCAATATTAAGTATATGTT+TGG + Chr1:100784540-100784559 None:intergenic 15.0%
!! TAAAACATTTAATGTTAACA+GGG - Chr1:100786082-100786101 MsG0180006155.01.T01:intron 15.0%
!!! ATTGATTTTGAATGAATTTA+TGG - Chr1:100784378-100784397 MsG0180006155.01.T01:intron 15.0%
!!! ATTTTTATTTAATGTGTGTT+TGG - Chr1:100784339-100784358 MsG0180006155.01.T01:intron 15.0%
!!! TTTTTTTTTCTTACTTATGA+AGG - Chr1:100784256-100784275 MsG0180006155.01.T01:CDS 15.0%
!! AAAACATTTAATGTTAACAG+GGG - Chr1:100786083-100786102 MsG0180006155.01.T01:intron 20.0%
!! AACAATAATAACAACAATCA+AGG + Chr1:100785428-100785447 None:intergenic 20.0%
!! AATTACTCTTTCAAAAAATG+TGG - Chr1:100785155-100785174 MsG0180006155.01.T01:intron 20.0%
!! ACAATAATAACAACAATCAA+GGG + Chr1:100785427-100785446 None:intergenic 20.0%
!! ATAAAGCAAGAAAAAATGTA+GGG - Chr1:100786912-100786931 MsG0180006155.01.T01:five_prime_UTR 20.0%
!! CAATAATAGAATGATAAATG+AGG - Chr1:100784640-100784659 MsG0180006155.01.T01:intron 20.0%
!! CAGATAATCAATTAAAAAAC+TGG + Chr1:100785483-100785502 None:intergenic 20.0%
!! GAAAAAAAATGACAACAATA+TGG + Chr1:100786875-100786894 None:intergenic 20.0%
!! GGATATAATAGAATATATGT+TGG - Chr1:100786176-100786195 MsG0180006155.01.T01:intron 20.0%
!! GTAAAACATTTAATGTTAAC+AGG - Chr1:100786081-100786100 MsG0180006155.01.T01:intron 20.0%
!! TATAAAGCAAGAAAAAATGT+AGG - Chr1:100786911-100786930 MsG0180006155.01.T01:five_prime_UTR 20.0%
!! TGATATATGATAGAACATTA+TGG - Chr1:100785378-100785397 MsG0180006155.01.T01:intron 20.0%
!! TGCAAAAAAATCAATGAAAA+AGG - Chr1:100784056-100784075 MsG0180006155.01.T01:CDS 20.0%
!! TTTATATCAAAGACTGAAAA+GGG + Chr1:100786897-100786916 None:intergenic 20.0%
!!! AATCAATGATACTTTAAAAG+TGG - Chr1:100784512-100784531 MsG0180006155.01.T01:intron 20.0%
!!! CATTTTTAGCTTTATTTTGT+TGG - Chr1:100785711-100785730 MsG0180006155.01.T01:intron 20.0%
!!! GTTTCAATTAAAGTTTTTCT+AGG + Chr1:100785313-100785332 None:intergenic 20.0%
!!! TCTACTTCAATCAAATTTTA+GGG + Chr1:100783535-100783554 None:intergenic 20.0%
!!! TTAATATTGATTTTGTGTGA+AGG - Chr1:100784549-100784568 MsG0180006155.01.T01:intron 20.0%
!!! TTCTACTTCAATCAAATTTT+AGG + Chr1:100783536-100783555 None:intergenic 20.0%
! AAATGTCTCAAACAATGTAA+TGG - Chr1:100784312-100784331 MsG0180006155.01.T01:intron 25.0%
! AAGAAGAAGAAGAATGAAAA+TGG - Chr1:100783931-100783950 MsG0180006155.01.T01:CDS 25.0%
! AGATGAATCAATTGAAAAGA+AGG - Chr1:100783885-100783904 MsG0180006155.01.T01:CDS 25.0%
! ATGAAAATATTGTAGAGAGT+TGG - Chr1:100784714-100784733 MsG0180006155.01.T01:intron 25.0%
! CATGTAGATTCTATATAGTA+AGG - Chr1:100784805-100784824 MsG0180006155.01.T01:CDS 25.0%
! CTATACTAGCAATACATTAT+AGG - Chr1:100785815-100785834 MsG0180006155.01.T01:intron 25.0%
! CTTTATATCAAAGACTGAAA+AGG + Chr1:100786898-100786917 None:intergenic 25.0%
! GAAAATAATATATGAACCGA+TGG + Chr1:100785848-100785867 None:intergenic 25.0%
! TAAAGCAAGAAAAAATGTAG+GGG - Chr1:100786913-100786932 MsG0180006155.01.T01:five_prime_UTR 25.0%
! TATATGATAGAACATTATGG+CGG - Chr1:100785381-100785400 MsG0180006155.01.T01:intron 25.0%
! TGAAAATATTGTAGAGAGTT+GGG - Chr1:100784715-100784734 MsG0180006155.01.T01:intron 25.0%
! TGACTAAAATTCAATTGTAG+AGG - Chr1:100784442-100784461 MsG0180006155.01.T01:intron 25.0%
!! CCAAAAATCGATTCTTATTA+TGG - Chr1:100785904-100785923 MsG0180006155.01.T01:intron 25.0%
!!! AATCGATTTTTGGAATTGTA+AGG + Chr1:100785897-100785916 None:intergenic 25.0%
!!! CATAATTAGTTTTAAGGTGA+GGG - Chr1:100785678-100785697 MsG0180006155.01.T01:intron 25.0%
!!! CCATAATAAGAATCGATTTT+TGG + Chr1:100785907-100785926 None:intergenic 25.0%
!!! GATTGCCATAATTAGTTTTA+AGG - Chr1:100785672-100785691 MsG0180006155.01.T01:intron 25.0%
!!! TTTAGGGTTTCAATTCTTTT+GGG + Chr1:100783519-100783538 None:intergenic 25.0%
!!! TTTTAGGGTTTCAATTCTTT+TGG + Chr1:100783520-100783539 None:intergenic 25.0%
AAAGCAAGAAAAAATGTAGG+GGG - Chr1:100786914-100786933 MsG0180006155.01.T01:five_prime_UTR 30.0%
AAATAACAGAGGAAGAACTA+AGG - Chr1:100786213-100786232 MsG0180006155.01.T01:CDS 30.0%
AAGAAATAGATGACATTGAG+AGG - Chr1:100784893-100784912 MsG0180006155.01.T01:intron 30.0%
ACTCAAAAATTGTATTGAGG+AGG - Chr1:100785026-100785045 MsG0180006155.01.T01:intron 30.0%
AGAAAAGATGGTAAGAAACT+CGG - Chr1:100784752-100784771 MsG0180006155.01.T01:CDS 30.0%
AGAAATAGATGACATTGAGA+GGG - Chr1:100784894-100784913 MsG0180006155.01.T01:intron 30.0%
AGAACAAAAAGAGGAAATGA+AGG - Chr1:100783849-100783868 MsG0180006155.01.T01:CDS 30.0%
ATAGATAAATCACCTTGTAG+TGG + Chr1:100784229-100784248 None:intergenic 30.0%
CATGCAATTAATTTCAGTGA+TGG + Chr1:100785623-100785642 None:intergenic 30.0%
CATTATAGGTCTATTTCCAT+CGG - Chr1:100785829-100785848 MsG0180006155.01.T01:intron 30.0%
CCTCACCTTAAAACTAATTA+TGG + Chr1:100785680-100785699 None:intergenic 30.0%
CTCAAAAATTGTATTGAGGA+GGG - Chr1:100785027-100785046 MsG0180006155.01.T01:intron 30.0%
CTTCTCAAATTGCAATGTAA+AGG - Chr1:100786241-100786260 MsG0180006155.01.T01:CDS 30.0%
GAAAATATTGTAGAGAGTTG+GGG - Chr1:100784716-100784735 MsG0180006155.01.T01:intron 30.0%
GAAAGAAGAAGAACAAAAAG+AGG - Chr1:100783840-100783859 MsG0180006155.01.T01:CDS 30.0%
GAATGATTCTAATCATCAAG+AGG - Chr1:100784167-100784186 MsG0180006155.01.T01:CDS 30.0%
GGAACTCAAAAATTGTATTG+AGG - Chr1:100785023-100785042 MsG0180006155.01.T01:intron 30.0%
TAATAACAACAATCAAGGGT+CGG + Chr1:100785423-100785442 None:intergenic 30.0%
! AACTGCAAATGATTTTTCAC+CGG + Chr1:100786579-100786598 None:intergenic 30.0%
! AATGATGATAGTGTTGCTAA+TGG - Chr1:100784015-100784034 MsG0180006155.01.T01:CDS 30.0%
! AATTTAAAACCCTCCTCATT+TGG - Chr1:100784999-100785018 MsG0180006155.01.T01:intron 30.0%
! ATGATGATAGTGTTGCTAAT+GGG - Chr1:100784016-100784035 MsG0180006155.01.T01:CDS 30.0%
! ATTTAAAACCCTCCTCATTT+GGG - Chr1:100785000-100785019 MsG0180006155.01.T01:intron 30.0%
! ATTTCCAATTTCCTCGTTTT+TGG + Chr1:100783810-100783829 None:intergenic 30.0%
! CTTACCATCTTTTCTACAAT+AGG + Chr1:100784747-100784766 None:intergenic 30.0%
! TCTTTTTGTGCTTCCTTATA+TGG - Chr1:100785765-100785784 MsG0180006155.01.T01:intron 30.0%
!!! CCATAATTAGTTTTAAGGTG+AGG - Chr1:100785677-100785696 MsG0180006155.01.T01:intron 30.0%
!!! GACATTCACAGTTATTTTGA+AGG - Chr1:100785589-100785608 MsG0180006155.01.T01:intron 30.0%
AAACGAGGAAATTGGAAATG+AGG - Chr1:100783811-100783830 MsG0180006155.01.T01:CDS 35.0%
AAAGAAGAACAAAACTGCAG+AGG - Chr1:100784116-100784135 MsG0180006155.01.T01:CDS 35.0%
AAATAGGACAGTATCTGTAG+TGG - Chr1:100786842-100786861 MsG0180006155.01.T01:five_prime_UTR 35.0%
AACAAAACTGCAGAGGAAAA+TGG - Chr1:100784123-100784142 MsG0180006155.01.T01:CDS 35.0%
AACGAGGAAATTGGAAATGA+GGG - Chr1:100783812-100783831 MsG0180006155.01.T01:CDS 35.0%
AATGAAAATGGTGTGGCTAA+TGG - Chr1:100783943-100783962 MsG0180006155.01.T01:CDS 35.0%
AATTCAAAACCCTCCTCATT+TGG - Chr1:100784946-100784965 MsG0180006155.01.T01:intron 35.0%
AATTCCCTACTATTCAAGTG+AGG - Chr1:100785564-100785583 MsG0180006155.01.T01:intron 35.0%
ACATTTAATGTTAACAGGGG+AGG - Chr1:100786086-100786105 MsG0180006155.01.T01:intron 35.0%
ACTCAATCCAATGAAGATGA+TGG - Chr1:100783782-100783801 MsG0180006155.01.T01:CDS 35.0%
AGAGAGTTTGAAGAAGAAGA+AGG + Chr1:100783680-100783699 None:intergenic 35.0%
AGAGATTAATGAGCTGGATA+GGG - Chr1:100785352-100785371 MsG0180006155.01.T01:intron 35.0%
AGCACCTATTGTAGAAAAGA+TGG - Chr1:100784740-100784759 MsG0180006155.01.T01:CDS 35.0%
AGGGGTTTGTAAAAAAAGGA+AGG - Chr1:100784861-100784880 MsG0180006155.01.T01:CDS 35.0%
ATATGTTGGAAGTCTGTCAT+GGG - Chr1:100786190-100786209 MsG0180006155.01.T01:intron 35.0%
ATGAAAATGGTGTGGCTAAT+GGG - Chr1:100783944-100783963 MsG0180006155.01.T01:CDS 35.0%
ATTCAAAACCCTCCTCATTT+GGG - Chr1:100784947-100784966 MsG0180006155.01.T01:intron 35.0%
ATTGATTGCAATGTTTCAGC+AGG - Chr1:100785792-100785811 MsG0180006155.01.T01:intron 35.0%
ATTTACTCCAGAAATGAAGG+AGG - Chr1:100786154-100786173 MsG0180006155.01.T01:intron 35.0%
CAAGTTTGAATCAATTCTGG+AGG - Chr1:100784486-100784505 MsG0180006155.01.T01:intron 35.0%
GAAATAGATGACATTGAGAG+GGG - Chr1:100784895-100784914 MsG0180006155.01.T01:intron 35.0%
GAAATTGGAAATGAGGGTTT+CGG - Chr1:100783818-100783837 MsG0180006155.01.T01:CDS 35.0%
GAAGAAGAATGAAAATGGTG+TGG - Chr1:100783936-100783955 MsG0180006155.01.T01:CDS 35.0%
GATTAGATTCAGCGTTAATC+TGG + Chr1:100783655-100783674 None:intergenic 35.0%
GCAATCAATCCTACCATATA+AGG + Chr1:100785781-100785800 None:intergenic 35.0%
GTCTCAAACAATGTAATGGT+TGG - Chr1:100784316-100784335 MsG0180006155.01.T01:intron 35.0%
GTTGCTACGAAAGTTTATGT+TGG - Chr1:100785538-100785557 MsG0180006155.01.T01:intron 35.0%
TAGAGATTAATGAGCTGGAT+AGG - Chr1:100785351-100785370 MsG0180006155.01.T01:intron 35.0%
TATATGTTGGAAGTCTGTCA+TGG - Chr1:100786189-100786208 MsG0180006155.01.T01:intron 35.0%
TCAGTTGCTGGTGAAAAATT+AGG - Chr1:100786551-100786570 MsG0180006155.01.T01:exon 35.0%
TCATCCTCACTTGAATAGTA+GGG + Chr1:100785571-100785590 None:intergenic 35.0%
TCATCTGATTTACTTCCCTT+AGG + Chr1:100785259-100785278 None:intergenic 35.0%
TGTTCATGCAGTCAAGAAAA+TGG - Chr1:100785511-100785530 MsG0180006155.01.T01:intron 35.0%
TTATATCCCTCCTTCATTTC+TGG + Chr1:100786164-100786183 None:intergenic 35.0%
TTGAACAAAAAACCAGTTGC+AGG - Chr1:100786413-100786432 MsG0180006155.01.T01:CDS 35.0%
TTTACTCCAGAAATGAAGGA+GGG - Chr1:100786155-100786174 MsG0180006155.01.T01:intron 35.0%
TTTGTGCTTCCTTATATGGT+AGG - Chr1:100785769-100785788 MsG0180006155.01.T01:intron 35.0%
! AAACCCAGTGTTGAAATTCA+CGG - Chr1:100783560-100783579 MsG0180006155.01.T01:three_prime_UTR 35.0%
! AATTGTATTGAGGAGGGTTT+TGG - Chr1:100785033-100785052 MsG0180006155.01.T01:intron 35.0%
! ATCATTCTCCTCTGCAATTT+TGG + Chr1:100784154-100784173 None:intergenic 35.0%
! ATTCAGCGTTAATCTGGTTT+AGG + Chr1:100783649-100783668 None:intergenic 35.0%
! CTTAGACAAAATGGGTTTGT+TGG + Chr1:100783726-100783745 None:intergenic 35.0%
! GAATTTCAACACTGGGTTTT+TGG + Chr1:100783559-100783578 None:intergenic 35.0%
! TAATGGGGTTGTTGTTGTTA+AGG - Chr1:100784032-100784051 MsG0180006155.01.T01:CDS 35.0%
! TGATGATAGTGTTGCTAATG+GGG - Chr1:100784017-100784036 MsG0180006155.01.T01:CDS 35.0%
! TTCAGCGTTAATCTGGTTTA+GGG + Chr1:100783648-100783667 None:intergenic 35.0%
! TTTAAAACCCTCCTCATTTG+GGG - Chr1:100785001-100785020 MsG0180006155.01.T01:intron 35.0%
! TTTGGTTCCATCATCTTCAT+TGG + Chr1:100783792-100783811 None:intergenic 35.0%
! TTTTCGCGCTTAGACAAAAT+GGG + Chr1:100783734-100783753 None:intergenic 35.0%
! TTTTTCGCGCTTAGACAAAA+TGG + Chr1:100783735-100783754 None:intergenic 35.0%
!! CCTTCATTTCTGGAGTAAAT+CGG + Chr1:100786154-100786173 None:intergenic 35.0%
!! CTTCATTTCTGGAGTAAATC+GGG + Chr1:100786153-100786172 None:intergenic 35.0%
!! TTAATGTGTGTTTGGTGCTA+TGG - Chr1:100784347-100784366 MsG0180006155.01.T01:intron 35.0%
!! TTGGATTGAGTTTGTTGCAA+AGG + Chr1:100783773-100783792 None:intergenic 35.0%
!!! GCAACTGGTTTTTTGTTCAA+AGG + Chr1:100786413-100786432 None:intergenic 35.0%
AAAACAAAAGCTTCACGAGG+CGG - Chr1:100783472-100783491 MsG0180006155.01.T01:three_prime_UTR 40.0%
AAACTCCCAAACAAAGCCTA+AGG - Chr1:100785240-100785259 MsG0180006155.01.T01:intron 40.0%
AACTCCCAAACAAAGCCTAA+GGG - Chr1:100785241-100785260 MsG0180006155.01.T01:intron 40.0%
AACTGCAGAGGAAAATGGTA+AGG - Chr1:100784128-100784147 MsG0180006155.01.T01:CDS 40.0%
AAGCAGCTATTTGTGGGTTT+GGG + Chr1:100786721-100786740 None:intergenic 40.0%
AATGCCACAATCTACGGTAT+TGG - Chr1:100784191-100784210 MsG0180006155.01.T01:CDS 40.0%
AATGTAAAGGCCATACGACT+TGG - Chr1:100786254-100786273 MsG0180006155.01.T01:CDS 40.0%
ACCAAAACAAAAGCTTCACG+AGG - Chr1:100783469-100783488 MsG0180006155.01.T01:three_prime_UTR 40.0%
ACTTGGTATGGACAAGGAAA+CGG - Chr1:100786271-100786290 MsG0180006155.01.T01:CDS 40.0%
AGAGGAAATGCCACAATCTA+CGG - Chr1:100784185-100784204 MsG0180006155.01.T01:CDS 40.0%
AGGAAGAATAGGATGTGCTA+CGG - Chr1:100786662-100786681 MsG0180006155.01.T01:five_prime_UTR 40.0%
CAAGTGGAAAGAGGAAGAAT+AGG - Chr1:100786651-100786670 MsG0180006155.01.T01:five_prime_UTR 40.0%
CAGTAGAAGCAGCTATTTGT+GGG + Chr1:100786727-100786746 None:intergenic 40.0%
CCGATTTACTCCAGAAATGA+AGG - Chr1:100786151-100786170 MsG0180006155.01.T01:intron 40.0%
CTAACACTACTACCACTACA+AGG - Chr1:100784214-100784233 MsG0180006155.01.T01:CDS 40.0%
GAGACTAGAGATTAATGAGC+TGG - Chr1:100785346-100785365 MsG0180006155.01.T01:intron 40.0%
GAGTTTGAAGAAGAAGAAGG+TGG + Chr1:100783677-100783696 None:intergenic 40.0%
GCGCAAGTTTGAATCAATTC+TGG - Chr1:100784483-100784502 MsG0180006155.01.T01:intron 40.0%
GCTACGAAAGTTTATGTTGG+AGG - Chr1:100785541-100785560 MsG0180006155.01.T01:intron 40.0%
GGAACCAAAAACGAGGAAAT+TGG - Chr1:100783803-100783822 MsG0180006155.01.T01:CDS 40.0%
GTCATCCTCACTTGAATAGT+AGG + Chr1:100785572-100785591 None:intergenic 40.0%
TCAGTTGCAGTTGAAAAACC+AGG - Chr1:100786479-100786498 MsG0180006155.01.T01:CDS 40.0%
TCTGTCATGGGAAATAACAG+AGG - Chr1:100786202-100786221 MsG0180006155.01.T01:CDS 40.0%
TGAAAATGGTGTGGCTAATG+GGG - Chr1:100783945-100783964 MsG0180006155.01.T01:CDS 40.0%
TGATAAATGAGGATGTGCGT+TGG - Chr1:100784651-100784670 MsG0180006155.01.T01:intron 40.0%
TTAAAACCCTCCTCATTTGG+GGG - Chr1:100785002-100785021 MsG0180006155.01.T01:intron 40.0%
TTAGCCAATACCGTAGATTG+TGG + Chr1:100784198-100784217 None:intergenic 40.0%
TTCAAAACCCTCCTCATTTG+GGG - Chr1:100784948-100784967 MsG0180006155.01.T01:intron 40.0%
TTTCCACTTGCAACAGAACT+TGG + Chr1:100786641-100786660 None:intergenic 40.0%
! AGTGATGATGATGTGGCTAA+TGG - Chr1:100783979-100783998 MsG0180006155.01.T01:CDS 40.0%
! GAAGAAGAGTGATGATGATG+TGG - Chr1:100783972-100783991 MsG0180006155.01.T01:CDS 40.0%
! GTGATGATGATGTGGCTAAT+GGG - Chr1:100783980-100783999 MsG0180006155.01.T01:CDS 40.0%
! GTTGCTTGAGTTGCTTTACA+TGG + Chr1:100786131-100786150 None:intergenic 40.0%
! TGATGATGATGTGGCTAATG+GGG - Chr1:100783981-100784000 MsG0180006155.01.T01:CDS 40.0%
! TTGGACCAAAGTGTCTTGTT+TGG - Chr1:100786359-100786378 MsG0180006155.01.T01:CDS 40.0%
! TTTAGAACCTGCAACTGGTT+TGG + Chr1:100786441-100786460 None:intergenic 40.0%
!! ACCAAAGTGTCTTGTTTGGA+AGG - Chr1:100786363-100786382 MsG0180006155.01.T01:CDS 40.0%
!! ACTTCCCTTAGGCTTTGTTT+GGG + Chr1:100785248-100785267 None:intergenic 40.0%
!! AGACAAAATGGGTTTGTTGG+TGG + Chr1:100783723-100783742 None:intergenic 40.0%
!! AGATGATGGAACCAAAAACG+AGG - Chr1:100783796-100783815 MsG0180006155.01.T01:CDS 40.0%
!! ATTGATTTTTCACCTGCACC+TGG + Chr1:100786500-100786519 None:intergenic 40.0%
!! TAAGGCTTTGTTTGCGAGTT+TGG - Chr1:100784823-100784842 MsG0180006155.01.T01:CDS 40.0%
!! TACTTCCCTTAGGCTTTGTT+TGG + Chr1:100785249-100785268 None:intergenic 40.0%
!! TTAGGCTTTGTTTGGGAGTT+TGG + Chr1:100785241-100785260 None:intergenic 40.0%
!!! CACAGTTATTTTGAAGGCTG+TGG - Chr1:100785595-100785614 MsG0180006155.01.T01:intron 40.0%
!!! TTTTTGAGTTCCCCCAAATG+AGG + Chr1:100785015-100785034 None:intergenic 40.0%
AAGGAAACGGGAGAATTTCG+AGG - Chr1:100786284-100786303 MsG0180006155.01.T01:CDS 45.0%
ACACAATCAAGCCGTCTTCA+TGG + Chr1:100786804-100786823 None:intergenic 45.0%
ACGCCGTGAATTTCAACACT+GGG + Chr1:100783566-100783585 None:intergenic 45.0%
ACTGAAGACAGCACTTGCAT+TGG - Chr1:100786340-100786359 MsG0180006155.01.T01:CDS 45.0%
AGGAAACGGGAGAATTTCGA+GGG - Chr1:100786285-100786304 MsG0180006155.01.T01:CDS 45.0%
ATATCGTTCCGCCATGAAGA+CGG - Chr1:100786790-100786809 MsG0180006155.01.T01:five_prime_UTR 45.0%
ATCAAGAGCCAATGCTCGTT+TGG + Chr1:100785989-100786008 None:intergenic 45.0%
CAACCAAGTTCTGTTGCAAG+TGG - Chr1:100786635-100786654 MsG0180006155.01.T01:five_prime_UTR 45.0%
CTTGGTATGGACAAGGAAAC+GGG - Chr1:100786272-100786291 MsG0180006155.01.T01:CDS 45.0%
CTTGTCCATACCAAGTCGTA+TGG + Chr1:100786267-100786286 None:intergenic 45.0%
GAACTTGGTTGCTCAACAGT+TGG + Chr1:100786626-100786645 None:intergenic 45.0%
GAAGCAGCTATTTGTGGGTT+TGG + Chr1:100786722-100786741 None:intergenic 45.0%
GAGAGTAGTCAAACCACTAG+AGG - Chr1:100785277-100785296 MsG0180006155.01.T01:intron 45.0%
GATGGTAAGAAACTCGGCTT+AGG - Chr1:100784758-100784777 MsG0180006155.01.T01:CDS 45.0%
GCAGCTGAAAAATCAGTTGC+TGG - Chr1:100786539-100786558 MsG0180006155.01.T01:CDS 45.0%
GCAGTAGAAGCAGCTATTTG+TGG + Chr1:100786728-100786747 None:intergenic 45.0%
GCCTTCCAAACAAGACACTT+TGG + Chr1:100786367-100786386 None:intergenic 45.0%
GCTGGTGAAAAATTAGGTGC+CGG - Chr1:100786557-100786576 MsG0180006155.01.T01:exon 45.0%
GGAAGAATAGGATGTGCTAC+GGG - Chr1:100786663-100786682 MsG0180006155.01.T01:five_prime_UTR 45.0%
GGGGAGGGGTTTGTAAAAAA+AGG - Chr1:100784857-100784876 MsG0180006155.01.T01:CDS 45.0%
GTTCTGTTGCAAGTGGAAAG+AGG - Chr1:100786642-100786661 MsG0180006155.01.T01:five_prime_UTR 45.0%
GTTGCAAAGGTCGAAGCTTT+CGG + Chr1:100783760-100783779 None:intergenic 45.0%
TAGATGACATTGAGAGGGGA+AGG - Chr1:100784899-100784918 MsG0180006155.01.T01:intron 45.0%
TCAAAACCCTCCTCATTTGG+GGG - Chr1:100784949-100784968 MsG0180006155.01.T01:intron 45.0%
TCACGGCGTGAGATTTAGAA+TGG - Chr1:100783577-100783596 MsG0180006155.01.T01:three_prime_UTR 45.0%
TCATTTGCAGTTGAGCAACC+AGG - Chr1:100786587-100786606 MsG0180006155.01.T01:five_prime_UTR 45.0%
TCCTGACACTGGCAAGTTTA+GGG - Chr1:100785648-100785667 MsG0180006155.01.T01:intron 45.0%
TCTGGAGGGTTGGGAATATA+GGG + Chr1:100785198-100785217 None:intergenic 45.0%
TGGTAAGGCCAAAATTGCAG+AGG - Chr1:100784143-100784162 MsG0180006155.01.T01:CDS 45.0%
TTCCTGACACTGGCAAGTTT+AGG - Chr1:100785647-100785666 MsG0180006155.01.T01:intron 45.0%
! CTTTGTTTGCGAGTTTGGAG+GGG - Chr1:100784828-100784847 MsG0180006155.01.T01:CDS 45.0%
! CTTTGTTTGGGAGTTTGGAG+GGG + Chr1:100785236-100785255 None:intergenic 45.0%
! TGCATGACTTTTCCTGACAC+TGG - Chr1:100785637-100785656 MsG0180006155.01.T01:intron 45.0%
!! AAACGAGCATTGGCTCTTGA+TGG - Chr1:100785988-100786007 MsG0180006155.01.T01:intron 45.0%
!! AAAGGCCATACGACTTGGTA+TGG - Chr1:100786259-100786278 MsG0180006155.01.T01:CDS 45.0%
!! ACAACTTGCTGACGTTTCTG+TGG - Chr1:100785936-100785955 MsG0180006155.01.T01:intron 45.0%
!! ACTGATTTTTCACCTGCACC+TGG + Chr1:100786464-100786483 None:intergenic 45.0%
!! ACTGATTTTTCAGCTGCAGC+TGG + Chr1:100786536-100786555 None:intergenic 45.0%
!! CATACGACTTGGTATGGACA+AGG - Chr1:100786265-100786284 MsG0180006155.01.T01:CDS 45.0%
!! GCCTCGTGAAGCTTTTGTTT+TGG + Chr1:100783473-100783492 None:intergenic 45.0%
!! GCTTTGTTTGCGAGTTTGGA+GGG - Chr1:100784827-100784846 MsG0180006155.01.T01:CDS 45.0%
!! GCTTTGTTTGGGAGTTTGGA+GGG + Chr1:100785237-100785256 None:intergenic 45.0%
!! TACTGCACTTTGAAGCATGC+AGG - Chr1:100786742-100786761 MsG0180006155.01.T01:five_prime_UTR 45.0%
!! TGTATTGAGGAGGGTTTTGG+AGG - Chr1:100785036-100785055 MsG0180006155.01.T01:intron 45.0%
!!! GTATTGAGGAGGGTTTTGGA+GGG - Chr1:100785037-100785056 MsG0180006155.01.T01:intron 45.0%
AAAACCCTCCTCATTTGGGG+GGG - Chr1:100784951-100784970 MsG0180006155.01.T01:intron 50.0%
ACAATCAAGGGTCGGCTACA+TGG + Chr1:100785415-100785434 None:intergenic 50.0%
ACATTGAGAGGGGAAGGCTT+TGG - Chr1:100784905-100784924 MsG0180006155.01.T01:intron 50.0%
ACCGCACAACTTATCCTGAC+AGG + Chr1:100786389-100786408 None:intergenic 50.0%
AGTCAAACCACTAGAGGCAG+AGG - Chr1:100785283-100785302 MsG0180006155.01.T01:intron 50.0%
ATTGAGAGGGGAAGGCTTTG+GGG - Chr1:100784907-100784926 MsG0180006155.01.T01:intron 50.0%
CAAAACCCTCCTCATTTGGG+GGG - Chr1:100784950-100784969 MsG0180006155.01.T01:intron 50.0%
CAATCAAGCCGTCTTCATGG+CGG + Chr1:100786801-100786820 None:intergenic 50.0%
CACGCCGTGAATTTCAACAC+TGG + Chr1:100783567-100783586 None:intergenic 50.0%
CATTGAGAGGGGAAGGCTTT+GGG - Chr1:100784906-100784925 MsG0180006155.01.T01:intron 50.0%
CCTGACACTGGCAAGTTTAG+GGG - Chr1:100785649-100785668 MsG0180006155.01.T01:intron 50.0%
CTGACACTGGCAAGTTTAGG+GGG - Chr1:100785650-100785669 MsG0180006155.01.T01:intron 50.0%
CTGGAGGGTTGGGAATATAG+GGG + Chr1:100785197-100785216 None:intergenic 50.0%
GAAACTCGGCTTAGGTGGTT+TGG - Chr1:100784766-100784785 MsG0180006155.01.T01:CDS 50.0%
GCAGTTGAAAAACCAGGTGC+AGG - Chr1:100786485-100786504 MsG0180006155.01.T01:CDS 50.0%
GCCTGTCAGGATAAGTTGTG+CGG - Chr1:100786385-100786404 MsG0180006155.01.T01:CDS 50.0%
GGTAAGAAACTCGGCTTAGG+TGG - Chr1:100784761-100784780 MsG0180006155.01.T01:CDS 50.0%
TGAGTTCCCCCAAATGAGGA+GGG + Chr1:100785011-100785030 None:intergenic 50.0%
TTGAGTTCCCCCAAATGAGG+AGG + Chr1:100785012-100785031 None:intergenic 50.0%
TTTGCGAGTTTGGAGGGGAA+GGG - Chr1:100784833-100784852 MsG0180006155.01.T01:CDS 50.0%
! CCTGGTTTAGAACCTGCAAC+TGG + Chr1:100786446-100786465 None:intergenic 50.0%
! CTCTGGAGGGTTGGGAATAT+AGG + Chr1:100785199-100785218 None:intergenic 50.0%
! TCTTGTTTGGAAGGCCTGTC+AGG - Chr1:100786372-100786391 MsG0180006155.01.T01:CDS 50.0%
! TGCTACGGGTGTCGTCAAAA+AGG - Chr1:100786677-100786696 MsG0180006155.01.T01:five_prime_UTR 50.0%
!! ACTGGTTTGGAACCTGCAAC+TGG + Chr1:100786428-100786447 None:intergenic 50.0%
!! CCAGTTGCAGGTTCTAAACC+AGG - Chr1:100786443-100786462 MsG0180006155.01.T01:CDS 50.0%
!! GGCTTTGTTTGCGAGTTTGG+AGG - Chr1:100784826-100784845 MsG0180006155.01.T01:CDS 50.0%
!! GGCTTTGTTTGGGAGTTTGG+AGG + Chr1:100785238-100785257 None:intergenic 50.0%
AAACCCTCCTCATTTGGGGG+GGG - Chr1:100784952-100784971 MsG0180006155.01.T01:intron 55.0%
AGGTCTTCCTCTGCCTCTAG+TGG + Chr1:100785293-100785312 None:intergenic 55.0%
CCCCTAAACTTGCCAGTGTC+AGG + Chr1:100785652-100785671 None:intergenic 55.0%
CTTCCTGCAGACTGAAGCAG+CGG - Chr1:100785963-100785982 MsG0180006155.01.T01:intron 55.0%
GAGGATGTGCGTTGGATGTG+TGG - Chr1:100784659-100784678 MsG0180006155.01.T01:intron 55.0%
GCAGGTTCCAAACCAGTTGC+AGG - Chr1:100786431-100786450 MsG0180006155.01.T01:CDS 55.0%
GTTTGCGAGTTTGGAGGGGA+AGG - Chr1:100784832-100784851 MsG0180006155.01.T01:CDS 55.0%
GTTTGGGAGTTTGGAGGGGA+GGG + Chr1:100785232-100785251 None:intergenic 55.0%
TGTTTGGGAGTTTGGAGGGG+AGG + Chr1:100785233-100785252 None:intergenic 55.0%
TTTGGGAGTTTGGAGGGGAG+GGG + Chr1:100785231-100785250 None:intergenic 55.0%
!! GCAGGTTCTAAACCAGGTGC+AGG - Chr1:100786449-100786468 MsG0180006155.01.T01:CDS 55.0%
!!! GTTGGTTTTCCTCCTGCACC+TGG + Chr1:100786608-100786627 None:intergenic 55.0%
AAAGCCCCCCCCAAATGAGG+AGG + Chr1:100784959-100784978 None:intergenic 60.0%
AAGCCCCCCCCAAATGAGGA+GGG + Chr1:100784958-100784977 None:intergenic 60.0%
AGCAGCGGCCAAACGAGCAT+TGG - Chr1:100785978-100785997 MsG0180006155.01.T01:intron 60.0%
CCTCATTTGGGGGGGGCTTT+GGG - Chr1:100784959-100784978 MsG0180006155.01.T01:intron 60.0%
CGAGTTTGGAGGGGAAGGGA+GGG - Chr1:100784837-100784856 MsG0180006155.01.T01:CDS 60.0%
CTCATTTGGGGGGGGCTTTG+GGG - Chr1:100784960-100784979 MsG0180006155.01.T01:intron 60.0%
GAGTTTGGAGGGGAAGGGAG+GGG - Chr1:100784838-100784857 MsG0180006155.01.T01:CDS 60.0%
GAGTTTGGAGGGGAGGGGAA+GGG + Chr1:100785226-100785245 None:intergenic 60.0%
GCAGTTGAGCAACCAGGTGC+AGG - Chr1:100786593-100786612 MsG0180006155.01.T01:five_prime_UTR 60.0%
GTTGAGCAACCAGGTGCAGG+AGG - Chr1:100786596-100786615 MsG0180006155.01.T01:five_prime_UTR 60.0%
TCCTCATTTGGGGGGGGCTT+TGG - Chr1:100784958-100784977 MsG0180006155.01.T01:intron 60.0%
!! AAGGGAAGGCTCTGGAGGGT+TGG + Chr1:100785208-100785227 None:intergenic 60.0%
!! AGGGAAGGCTCTGGAGGGTT+GGG + Chr1:100785207-100785226 None:intergenic 60.0%
CCCAAAGCCCCCCCCAAATG+AGG + Chr1:100784962-100784981 None:intergenic 65.0%
GCGAGTTTGGAGGGGAAGGG+AGG - Chr1:100784836-100784855 MsG0180006155.01.T01:CDS 65.0%
GGAGTTTGGAGGGGAGGGGA+AGG + Chr1:100785227-100785246 None:intergenic 65.0%
TGGCCGCTGCTTCAGTCTGC+AGG + Chr1:100785969-100785988 None:intergenic 65.0%
TTGGAGGGGAAGGGAGGGGA+GGG - Chr1:100784842-100784861 MsG0180006155.01.T01:CDS 65.0%
TTGGAGGGGAGGGGAAGGGA+AGG + Chr1:100785222-100785241 None:intergenic 65.0%
TTTGGAGGGGAAGGGAGGGG+AGG - Chr1:100784841-100784860 MsG0180006155.01.T01:CDS 65.0%
! AGGGGAAGGGAAGGCTCTGG+AGG + Chr1:100785213-100785232 None:intergenic 65.0%
!! GGGGAAGGGAAGGCTCTGGA+GGG + Chr1:100785212-100785231 None:intergenic 65.0%
GGGAGGGGAAGGGAAGGCTC+TGG + Chr1:100785216-100785235 None:intergenic 70.0%
TGGAGGGGAAGGGAGGGGAG+GGG - Chr1:100784843-100784862 MsG0180006155.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 100783457 100786973 100783457 ID=MsG0180006155.01;Name=MsG0180006155.01
Chr1 mRNA 100783457 100786973 100783457 ID=MsG0180006155.01.T01;Parent=MsG0180006155.01;Name=MsG0180006155.01.T01;_AED=0.33;_eAED=0.33;_QI=408|1|1|1|1|1|4|219|413
Chr1 exon 100783457 100784327 100783457 ID=MsG0180006155.01.T01:exon:2094;Parent=MsG0180006155.01.T01
Chr1 exon 100784411 100784457 100784411 ID=MsG0180006155.01.T01:exon:2093;Parent=MsG0180006155.01.T01
Chr1 exon 100784737 100784908 100784737 ID=MsG0180006155.01.T01:exon:2092;Parent=MsG0180006155.01.T01
Chr1 exon 100786195 100786973 100786195 ID=MsG0180006155.01.T01:exon:2091;Parent=MsG0180006155.01.T01
Chr1 five_prime_UTR 100786566 100786973 100786566 ID=MsG0180006155.01.T01:five_prime_utr;Parent=MsG0180006155.01.T01
Chr1 CDS 100786195 100786565 100786195 ID=MsG0180006155.01.T01:cds;Parent=MsG0180006155.01.T01
Chr1 CDS 100784737 100784908 100784737 ID=MsG0180006155.01.T01:cds;Parent=MsG0180006155.01.T01
Chr1 CDS 100784411 100784457 100784411 ID=MsG0180006155.01.T01:cds;Parent=MsG0180006155.01.T01
Chr1 CDS 100783676 100784327 100783676 ID=MsG0180006155.01.T01:cds;Parent=MsG0180006155.01.T01
Chr1 three_prime_UTR 100783457 100783675 100783457 ID=MsG0180006155.01.T01:three_prime_utr;Parent=MsG0180006155.01.T01
Gene Sequence

>MsG0180006155.01.T01

ATGAAGGTAGAAGAGAAAGAAGATGAATCAATTGAAAAGAAGGAGAAGCAAAATAAGAAGAAGAAGAAGAAGAAGAAGAATGAAAATGGTGTGGCTAATGGGGTTGTGAAGAAGAGTGATGATGATGTGGCTAATGGGGTTGTGAAGAAGAATGATGATAGTGTTGCTAATGGGGTTGTTGTTGTTAAGGATGCAAAAAAATCAATGAAAAAGGAGAAGCAAAAGAAGAAGAATCAATTGAAGAAGAAGAGAAAGAAGAACAAAACTGCAGAGGAAAATGGTAAGGCCAAAATTGCAGAGGAGAATGATTCTAATCATCAAGAGGAAATGCCACAATCTACGGTATTGGCTAACACTACTACCACTACAAGTCAAGAAAATGGTGATGTTGCTACGAAAGTTTATGTTGGAGGAATTCCCTACTATTCAAGTGAGGATGACATTCACAGTTATTTTGAAGGCTGTGGCACCATCACTGAAATTAATTGCATGACTTTTCCTGACACTGGCAAGTTTAGGGGGATTGCCATAATTAGTTTTAAGACTGAAGCAGCGGCCAAACGAGCATTGGCTCTTGATGGAGCTGACATGGGAGGACTCTTTCTTAAAATTCAACCATGTAAAGCAACTCAAGCAACCCGATTTACTCCAGAAATGAAGGAGGGATATAATAGAATATATGTTGGAAGTCTGTCATGGGAAATAACAGAGGAAGAACTAAGGAAATTCTTCTCAAATTGCAATGTAAAGGCCATACGACTTGGTATGGACAAGGAAACGGGAGAATTTCGAGGGTATGCTCATGTTGATTTCAGTGATAGTCAGTCACTGAAGACAGCACTTGCATTGGACCAAAGTGTCTTGTTTGGAAGGCCTGTCAGGATAAGTTGTGCGGTTCCTTTGAACAAAAAACCAGTTGCAGGTTCCAAACCAGTTGCAGGTTCTAAACCAGGTGCAGGTGAAAAATCAGTTGCAGTTGAAAAACCAGGTGCAGGTGAAAAATCAATCGCAGTTGAAAAACCAGCTGCAGCTGAAAAATCAGTTGCTGGTGAAAAATTAGGTGCCGGTGAAAAATCATTTGCAGTTGAGCAACCAGGTGCAGGAGGAAAACCAACTGTTGAGCAACCAAGTTCTGTTGCAAGTGGAAAGAGGAAGAATAGGATGTGCTACGGGTGTCGTCAAAAAGGACATAATCTCTCAGAATGCCCAAACCCACAAATAGCTGCTTCTACTGCACTTTGA

Protein sequence

>MsG0180006155.01.T01

MKVEEKEDESIEKKEKQNKKKKKKKKNENGVANGVVKKSDDDVANGVVKKNDDSVANGVVVVKDAKKSMKKEKQKKKNQLKKKRKKNKTAEENGKAKIAEENDSNHQEEMPQSTVLANTTTTTSQENGDVATKVYVGGIPYYSSEDDIHSYFEGCGTITEINCMTFPDTGKFRGIAIISFKTEAAAKRALALDGADMGGLFLKIQPCKATQATRFTPEMKEGYNRIYVGSLSWEITEEELRKFFSNCNVKAIRLGMDKETGEFRGYAHVDFSDSQSLKTALALDQSVLFGRPVRISCAVPLNKKPVAGSKPVAGSKPGAGEKSVAVEKPGAGEKSIAVEKPAAAEKSVAGEKLGAGEKSFAVEQPGAGGKPTVEQPSSVASGKRKNRMCYGCRQKGHNLSECPNPQIAASTAL*