Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003060 | sp|Q851Q6|OBGC2_ORYSJ | 58.140 | 473 | 163 | 6 | 28 | 467 | 32 | 502 | 0.0 | 518 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003060 | Msa0003470 | 0.808324 | 3.275158e-50 | -8.615850e-47 |
| Msa0003060 | Msa0037820 | 0.842782 | 2.095637e-58 | -8.615850e-47 |
| Msa0003060 | Msa0050720 | 0.801089 | 1.061238e-48 | -8.615850e-47 |
| Msa0003060 | Msa0078090 | 0.811682 | 6.195184e-51 | -8.615850e-47 |
| Msa0003060 | Msa0084680 | 0.835995 | 1.212311e-56 | -8.615850e-47 |
| Msa0003060 | Msa0140290 | 0.810649 | 1.037546e-50 | -8.615850e-47 |
| Msa0003060 | Msa0146670 | 0.843510 | 1.340834e-58 | -8.615850e-47 |
| Msa0003060 | Msa0149500 | 0.800132 | 1.663642e-48 | -8.615850e-47 |
| Msa0003060 | Msa0157020 | 0.803611 | 3.209640e-49 | -8.615850e-47 |
| Msa0003060 | Msa0164540 | 0.806725 | 7.155756e-50 | -8.615850e-47 |
| Msa0003060 | Msa0171920 | 0.815399 | 9.432568e-52 | -8.615850e-47 |
| Msa0003060 | Msa0176710 | 0.816796 | 4.596575e-52 | -8.615850e-47 |
| Msa0003060 | Msa0185390 | 0.824832 | 6.517157e-54 | -8.615850e-47 |
| Msa0003060 | Msa0298970 | 0.811686 | 6.183649e-51 | -8.615850e-47 |
| Msa0003060 | Msa0314790 | 0.815617 | 8.433211e-52 | -8.615850e-47 |
| Msa0003060 | Msa0380650 | 0.805991 | 1.021811e-49 | -8.615850e-47 |
| Msa0003060 | Msa0382500 | 0.805434 | 1.337414e-49 | -8.615850e-47 |
| Msa0003060 | Msa0421800 | 0.811587 | 6.499503e-51 | -8.615850e-47 |
| Msa0003060 | Msa0430290 | 0.804370 | 2.231998e-49 | -8.615850e-47 |
| Msa0003060 | Msa0432680 | 0.808245 | 3.404605e-50 | -8.615850e-47 |
| Msa0003060 | Msa0467800 | 0.816374 | 5.715395e-52 | -8.615850e-47 |
| Msa0003060 | Msa0467880 | 0.815562 | 8.676905e-52 | -8.615850e-47 |
| Msa0003060 | Msa0514260 | 0.809297 | 2.028820e-50 | -8.615850e-47 |
| Msa0003060 | Msa0519200 | 0.801289 | 9.660891e-49 | -8.615850e-47 |
| Msa0003060 | Msa0538570 | 0.800593 | 1.340288e-48 | -8.615850e-47 |
| Msa0003060 | Msa0576420 | 0.804779 | 1.834139e-49 | -8.615850e-47 |
| Msa0003060 | Msa0578900 | 0.804926 | 1.708207e-49 | -8.615850e-47 |
| Msa0003060 | Msa0583740 | 0.816604 | 5.077503e-52 | -8.615850e-47 |
| Msa0003060 | Msa0614230 | 0.802757 | 4.820590e-49 | -8.615850e-47 |
| Msa0003060 | Msa0620090 | 0.801274 | 9.727530e-49 | -8.615850e-47 |
| Msa0003060 | Msa0639370 | 0.802183 | 6.331720e-49 | -8.615850e-47 |
| Msa0003060 | Msa0669220 | 0.808687 | 2.740645e-50 | -8.615850e-47 |
| Msa0003060 | Msa0681890 | 0.801310 | 9.562653e-49 | -8.615850e-47 |
| Msa0003060 | Msa0703720 | 0.809960 | 1.461305e-50 | -8.615850e-47 |
| Msa0003060 | Msa0703760 | 0.806510 | 7.943536e-50 | -8.615850e-47 |
| Msa0003060 | Msa0709480 | 0.806216 | 9.163372e-50 | -8.615850e-47 |
| Msa0003060 | Msa0720270 | 0.811200 | 7.887057e-51 | -8.615850e-47 |
| Msa0003060 | Msa0780140 | 0.803720 | 3.047224e-49 | -8.615850e-47 |
| Msa0003060 | Msa0843690 | 0.802250 | 6.134582e-49 | -8.615850e-47 |
| Msa0003060 | Msa0882700 | 0.806593 | 7.627708e-50 | -8.615850e-47 |
| Msa0003060 | Msa0970090 | 0.800687 | 1.282512e-48 | -8.615850e-47 |
| Msa0003060 | Msa1009790 | 0.800039 | 1.737746e-48 | -8.615850e-47 |
| Msa0003060 | Msa1033960 | 0.816926 | 4.298040e-52 | -8.615850e-47 |
| Msa0003060 | Msa1118150 | 0.813776 | 2.156812e-51 | -8.615850e-47 |
| Msa0003060 | Msa1125780 | 0.800081 | 1.703854e-48 | -8.615850e-47 |
| Msa0003060 | Msa1125950 | 0.804284 | 2.326296e-49 | -8.615850e-47 |
| Msa0003060 | Msa1165810 | 0.821172 | 4.651079e-53 | -8.615850e-47 |
| Msa0003060 | Msa1171340 | 0.808137 | 3.590402e-50 | -8.615850e-47 |
| Msa0003060 | Msa1177240 | 0.829320 | 5.499472e-55 | -8.615850e-47 |
| Msa0003060 | Msa1198450 | 0.801908 | 7.212705e-49 | -8.615850e-47 |
| Msa0003060 | Msa1210640 | 0.804335 | 2.269392e-49 | -8.615850e-47 |
| Msa0003060 | Msa1293530 | 0.814900 | 1.217158e-51 | -8.615850e-47 |
| Msa0003060 | Msa1299160 | 0.809150 | 2.181197e-50 | -8.615850e-47 |
| Msa0003060 | Msa1309100 | 0.815028 | 1.139985e-51 | -8.615850e-47 |
| Msa0003060 | Msa1322420 | 0.812504 | 4.101462e-51 | -8.615850e-47 |
| Msa0003060 | Msa1376640 | 0.802002 | 6.897447e-49 | -8.615850e-47 |
| Msa0003060 | Msa1380720 | 0.822766 | 1.987090e-53 | -8.615850e-47 |
| Msa0003060 | Msa1381130 | 0.824880 | 6.352077e-54 | -8.615850e-47 |
| Msa0003060 | Msa1423230 | 0.820977 | 5.156736e-53 | -8.615850e-47 |
| Msa0003060 | Msa1431730 | 0.800882 | 1.170060e-48 | -8.615850e-47 |
| Msa0003060 | Msa1435470 | 0.809814 | 1.570610e-50 | -8.615850e-47 |
| Msa0003060 | Msa1440610 | 0.801130 | 1.040824e-48 | -8.615850e-47 |
| Msa0003060 | Msa1458330 | 0.802328 | 5.911651e-49 | -8.615850e-47 |
| Msa0003060 | Msa1458920 | 0.828824 | 7.251687e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003060 | MtrunA17_Chr1g0155741 | 92.137 | 496 | 17 | 1 | 1 | 474 | 1 | 496 | 0.0 | 915 |
| Msa0003060 | MtrunA17_Chr2g0286181 | 38.889 | 270 | 146 | 5 | 136 | 397 | 203 | 461 | 2.35e-50 | 181 |
| Msa0003060 | MtrunA17_Chr1g0186011 | 41.784 | 213 | 102 | 5 | 180 | 378 | 250 | 454 | 6.18e-38 | 145 |
| Msa0003060 | MtrunA17_Chr2g0292511 | 31.387 | 137 | 75 | 3 | 250 | 367 | 27 | 163 | 1.92e-15 | 78.2 |
| Msa0003060 | MtrunA17_Chr8g0358201 | 36.111 | 108 | 59 | 3 | 251 | 348 | 53 | 160 | 2.86e-12 | 68.6 |
| Msa0003060 | MtrunA17_Chr3g0129261 | 36.207 | 116 | 60 | 3 | 248 | 361 | 65 | 168 | 4.77e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003060 | AT5G18570.1 | 50.888 | 169 | 75 | 2 | 227 | 395 | 358 | 518 | 3.73e-47 | 173 |
| Msa0003060 | AT1G07615.1 | 38.793 | 232 | 116 | 4 | 180 | 393 | 225 | 448 | 3.14e-37 | 143 |
| Msa0003060 | AT1G30580.1 | 33.088 | 136 | 72 | 3 | 250 | 366 | 27 | 162 | 1.72e-15 | 78.6 |
Find 139 sgRNAs with CRISPR-Local
Find 374 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGGCATTAATGTTGTAAA+TGG | 0.168245 | 1_1:-5520668 | None:intergenic |
| GGCAAAGACTACTCATAATT+TGG | 0.185429 | 1_1:+5522635 | Msa0003060:three_prime_UTR |
| CCACGACCTCACTCTGTTAT+TGG | 0.196696 | 1_1:+5522291 | Msa0003060:CDS |
| TTATTGGAAAAGCGCGTTTC+GGG | 0.247186 | 1_1:-5517237 | None:intergenic |
| TGGTAGTTGCGTAGGGTTTA+AGG | 0.250524 | 1_1:-5517337 | None:intergenic |
| ACAGTTCTGTAGTCATTTAC+AGG | 0.252618 | 1_1:-5520972 | None:intergenic |
| AGGAGATAAGGGCCGCTTTA+AGG | 0.264646 | 1_1:+5522515 | Msa0003060:CDS |
| TAGAAATGCCACGGCATAAT+AGG | 0.302506 | 1_1:+5519617 | Msa0003060:CDS |
| CTACCATTTCATGGAATTAC+AGG | 0.304011 | 1_1:-5523003 | None:intergenic |
| AAATGGATAATCAGCAATAT+CGG | 0.307095 | 1_1:-5520651 | None:intergenic |
| TTGTTATTCGTTTGTGTTGT+TGG | 0.323888 | 1_1:-5517296 | None:intergenic |
| ACTCAAGAAATTATGAGAAT+TGG | 0.328796 | 1_1:+5522168 | Msa0003060:CDS |
| TTGCAGTTCAACGGCGCTTT+CGG | 0.329503 | 1_1:+5522614 | Msa0003060:three_prime_UTR |
| ATTATTGGAAAAGCGCGTTT+CGG | 0.340664 | 1_1:-5517238 | None:intergenic |
| CCATCAAGGCGTCCAAGATT+TGG | 0.342473 | 1_1:-5520686 | None:intergenic |
| GAAACTTCAGAGCTTGGTTT+TGG | 0.342930 | 1_1:-5522213 | None:intergenic |
| AGCGTTGATTTCCCAGCATT+TGG | 0.349531 | 1_1:-5520602 | None:intergenic |
| ACAACATTAATGCCAAATCT+TGG | 0.357348 | 1_1:+5520674 | Msa0003060:CDS |
| TGCTGGGAAATCAACGCTTC+TGG | 0.366085 | 1_1:+5520607 | Msa0003060:CDS |
| GACTACTCATAATTTGGTTC+GGG | 0.371971 | 1_1:+5522641 | Msa0003060:three_prime_UTR |
| TGAAGGAAAAGATACGTTAT+TGG | 0.376575 | 1_1:+5517611 | Msa0003060:CDS |
| AAAACCAAGCTCTGAAGTTT+CGG | 0.377456 | 1_1:+5522215 | Msa0003060:CDS |
| CATGGTTAGCGAGATGTTAA+AGG | 0.379680 | 1_1:+5522495 | Msa0003060:CDS |
| CACGAACGGTGATGATTACT+TGG | 0.395278 | 1_1:-5517401 | None:intergenic |
| CCAAATCTTGGACGCCTTGA+TGG | 0.397530 | 1_1:+5520686 | Msa0003060:CDS |
| GATTTGCCTGGTCTTATAGA+AGG | 0.401210 | 1_1:+5520758 | Msa0003060:CDS |
| AAGTTGAAGGAAGTGATTAT+TGG | 0.401545 | 1_1:-5517253 | None:intergenic |
| TGGAGTTTCATAGTAAGAAT+AGG | 0.401600 | 1_1:+5517631 | Msa0003060:CDS |
| AGACTACTCATAATTTGGTT+CGG | 0.403363 | 1_1:+5522640 | Msa0003060:three_prime_UTR |
| GTGCAAAATTTAATATTCAA+TGG | 0.403434 | 1_1:-5522912 | None:intergenic |
| CACAGTTGTGAAAAGCAAAC+GGG | 0.420716 | 1_1:+5519179 | Msa0003060:CDS |
| ACAACTATTGATCCATGAAT+AGG | 0.424559 | 1_1:-5523031 | None:intergenic |
| TACATCCCTGCTCCCAAGTT+GGG | 0.426129 | 1_1:-5520713 | None:intergenic |
| CTTGCTCGCAACAAAATCTA+AGG | 0.429097 | 1_1:-5522781 | None:intergenic |
| ACTAGAAACCAACGGTTCCT+TGG | 0.430294 | 1_1:-5522551 | None:intergenic |
| TTGTAGGGACTTCCAAATGC+TGG | 0.444567 | 1_1:+5520590 | Msa0003060:intron |
| ATACCTGTAATTCCATGAAA+TGG | 0.450583 | 1_1:+5523000 | Msa0003060:three_prime_UTR |
| GGTGATCCCAACTTGGGAGC+AGG | 0.459574 | 1_1:+5520707 | Msa0003060:CDS |
| CGAGATGTTAAAGGAGATAA+GGG | 0.460007 | 1_1:+5522504 | Msa0003060:CDS |
| TAGGCGTCGCTACCATTTCA+TGG | 0.462550 | 1_1:-5523012 | None:intergenic |
| ATGGTAGCGACGCCTATTCA+TGG | 0.462971 | 1_1:+5523019 | Msa0003060:three_prime_UTR |
| TCTTATAGAAGGTGCTCACT+TGG | 0.464858 | 1_1:+5520769 | Msa0003060:CDS |
| CCTTGATGGTGATCCCAACT+TGG | 0.465028 | 1_1:+5520700 | Msa0003060:CDS |
| TGAGCCGAAACTTCAGAGCT+TGG | 0.472376 | 1_1:-5522219 | None:intergenic |
| GACTGAAGAAAGTGACCAAA+AGG | 0.472530 | 1_1:+5522248 | Msa0003060:CDS |
| GCTACATTGGCAGATTTGCC+TGG | 0.472873 | 1_1:+5520746 | Msa0003060:CDS |
| TCTAAGAAGGACCCGGCTAC+TGG | 0.473999 | 1_1:+5520920 | Msa0003060:CDS |
| CAACAATGTATGGTCGTTCA+AGG | 0.478983 | 1_1:-5521797 | None:intergenic |
| ATCGGGTTTCGCAAGCGTAA+TGG | 0.482247 | 1_1:-5520633 | None:intergenic |
| TATTCAAAAGCTAAATAACT+TGG | 0.482490 | 1_1:-5522980 | None:intergenic |
| GCACAGTTGTGAAAAGCAAA+CGG | 0.484997 | 1_1:+5519178 | Msa0003060:CDS |
| GTTGATGGTGGTAGTTGCGT+AGG | 0.485221 | 1_1:-5517345 | None:intergenic |
| CGCAACAAAATCTAAGGTCC+AGG | 0.486042 | 1_1:-5522775 | None:intergenic |
| GATGAGAGATGACTCGGATA+AGG | 0.486698 | 1_1:+5519669 | Msa0003060:CDS |
| AACAACATGGACCAGTAGCC+GGG | 0.486773 | 1_1:-5520931 | None:intergenic |
| TTATTCAAAACAACAATGTA+TGG | 0.487346 | 1_1:-5521807 | None:intergenic |
| GCAAGTGTTTGACAAAGTAT+AGG | 0.489689 | 1_1:-5522595 | None:intergenic |
| ATCAAGTGATAGTCCAATCC+TGG | 0.490554 | 1_1:+5522757 | Msa0003060:three_prime_UTR |
| GCGAGATGTTAAAGGAGATA+AGG | 0.492991 | 1_1:+5522503 | Msa0003060:CDS |
| ATAATTTCTTGAGTCAATGT+TGG | 0.494238 | 1_1:-5522159 | None:intergenic |
| CGCAACAAGAACTTCATCAC+CGG | 0.498936 | 1_1:-5519229 | None:intergenic |
| ACCTGGGGAGGAAGTTAAGT+TGG | 0.499431 | 1_1:+5520132 | Msa0003060:CDS |
| GTCAAACACTTGCAGTTCAA+CGG | 0.499801 | 1_1:+5522605 | Msa0003060:three_prime_UTR |
| TGGAATTTGAAGGTTCTTTG+TGG | 0.501116 | 1_1:-5517276 | None:intergenic |
| AGGTTCTTTGTGGAAGTTGA+AGG | 0.502082 | 1_1:-5517266 | None:intergenic |
| AAGGCAGTGCGTTGATTCCA+AGG | 0.513530 | 1_1:+5522534 | Msa0003060:CDS |
| TGGGTCTTTGATACTTCCAA+TGG | 0.513837 | 1_1:+5517554 | Msa0003060:CDS |
| CGTTGATTCCAAGGAACCGT+TGG | 0.514117 | 1_1:+5522543 | Msa0003060:CDS |
| GTGATTATTTATGCTGATGA+AGG | 0.516366 | 1_1:+5517594 | Msa0003060:CDS |
| GTTGCGAGGGGTGGACAAGG+AGG | 0.518059 | 1_1:+5519246 | Msa0003060:CDS |
| TTTGTGTTGTTGGAATTTGA+AGG | 0.519213 | 1_1:-5517286 | None:intergenic |
| TTGCGAGGGGTGGACAAGGA+GGG | 0.520295 | 1_1:+5519247 | Msa0003060:CDS |
| AATGGATAATCAGCAATATC+GGG | 0.521649 | 1_1:-5520650 | None:intergenic |
| CAAGTAATCATCACCGTTCG+TGG | 0.521768 | 1_1:+5517402 | Msa0003060:CDS |
| ATACTTCCAATGGGTGGTCA+TGG | 0.522317 | 1_1:+5517564 | Msa0003060:CDS |
| GTGATGAAGTTCTTGTTGCG+AGG | 0.528670 | 1_1:+5519232 | Msa0003060:CDS |
| CAGTTCTGTAGTCATTTACA+GGG | 0.534642 | 1_1:-5520971 | None:intergenic |
| CAAAATCTAAGGTCCAGGAT+TGG | 0.540980 | 1_1:-5522770 | None:intergenic |
| TTTGGTTCATGGTCAACCTG+GGG | 0.544159 | 1_1:+5520117 | Msa0003060:CDS |
| ATACATCCCTGCTCCCAAGT+TGG | 0.545507 | 1_1:-5520714 | None:intergenic |
| TGTAGGGACTTCCAAATGCT+GGG | 0.545787 | 1_1:+5520591 | Msa0003060:intron |
| TTATTGCAGAAAGCGTATCA+TGG | 0.546103 | 1_1:+5522477 | Msa0003060:intron |
| TGCGAGGGGTGGACAAGGAG+GGG | 0.550722 | 1_1:+5519248 | Msa0003060:CDS |
| CCAATAACAGAGTGAGGTCG+TGG | 0.551059 | 1_1:-5522291 | None:intergenic |
| CAACAACATGGACCAGTAGC+CGG | 0.552473 | 1_1:-5520932 | None:intergenic |
| ATCACCGTTCGTGGCGGAGA+CGG | 0.553180 | 1_1:+5517411 | Msa0003060:CDS |
| GTGATCCCAACTTGGGAGCA+GGG | 0.553268 | 1_1:+5520708 | Msa0003060:CDS |
| TCCAACTTAACTTCCTCCCC+AGG | 0.554908 | 1_1:-5520133 | None:intergenic |
| CTTGTTGCGAGGGGTGGACA+AGG | 0.554974 | 1_1:+5519243 | Msa0003060:CDS |
| TGATGAAGTTCTTGTTGCGA+GGG | 0.555435 | 1_1:+5519233 | Msa0003060:CDS |
| GGGTCTTTGATACTTCCAAT+GGG | 0.556011 | 1_1:+5517555 | Msa0003060:CDS |
| CTTATAGAAGGTGCTCACTT+GGG | 0.556651 | 1_1:+5520770 | Msa0003060:CDS |
| AAGTTAAATGAGAGAAATGA+AGG | 0.556816 | 1_1:-5517213 | None:intergenic |
| TTGATGGTGGTAGTTGCGTA+GGG | 0.558642 | 1_1:-5517344 | None:intergenic |
| CGTGGCGGAGACGGTGGTCA+CGG | 0.559725 | 1_1:+5517420 | Msa0003060:CDS |
| CAGTAGATGTGTCAACAACA+TGG | 0.568396 | 1_1:-5520944 | None:intergenic |
| TCACCACCATGACCACCCAT+TGG | 0.575301 | 1_1:-5517570 | None:intergenic |
| CTACGAGTTGTAGCCGACGT+TGG | 0.577677 | 1_1:+5520163 | Msa0003060:CDS |
| GTATTCGTCTGAAGCTACAT+TGG | 0.579587 | 1_1:+5520733 | Msa0003060:CDS |
| CCAAGTTGGGATCACCATCA+AGG | 0.581733 | 1_1:-5520700 | None:intergenic |
| ATTATGAGAATTGGCAGCGA+TGG | 0.582383 | 1_1:+5522177 | Msa0003060:CDS |
| GGTTCATGGTCAACCTGGGG+AGG | 0.582643 | 1_1:+5520120 | Msa0003060:CDS |
| TGAGGCATCTAAGAAGGACC+CGG | 0.584490 | 1_1:+5520913 | Msa0003060:CDS |
| TATGGTCGTTCAAGGTACTC+AGG | 0.585659 | 1_1:-5521789 | None:intergenic |
| GGTGGTAATGTTGATGCTGT+TGG | 0.588083 | 1_1:+5517669 | Msa0003060:CDS |
| GAAGTTCTTGTTGCGAGGGG+TGG | 0.596690 | 1_1:+5519237 | Msa0003060:CDS |
| CTTGATGGTGATCCCAACTT+GGG | 0.597546 | 1_1:+5520701 | Msa0003060:CDS |
| CGTTGGTTTCTAGTGTGCCA+CGG | 0.598035 | 1_1:+5522560 | Msa0003060:CDS |
| ACCACCGTCTCCGCCACGAA+CGG | 0.600216 | 1_1:-5517415 | None:intergenic |
| GGAAACTACATACCTCTGGC+AGG | 0.603249 | 1_1:-5521836 | None:intergenic |
| AGAAGGTGCTCACTTGGGAA+AGG | 0.609931 | 1_1:+5520775 | Msa0003060:CDS |
| ACCGTTCGTGGCGGAGACGG+TGG | 0.613535 | 1_1:+5517414 | Msa0003060:CDS |
| TCTTTGATACTTCCAATGGG+TGG | 0.614114 | 1_1:+5517558 | Msa0003060:CDS |
| TTAGCTTGTTAGAAATGCCA+CGG | 0.620564 | 1_1:+5519608 | Msa0003060:CDS |
| TTTGTTAAGGCTGTTGATGG+TGG | 0.622985 | 1_1:-5517357 | None:intergenic |
| CTTCCAATGGGTGGTCATGG+TGG | 0.633367 | 1_1:+5517567 | Msa0003060:CDS |
| TGAGCACCTTCTATAAGACC+AGG | 0.641306 | 1_1:-5520764 | None:intergenic |
| ATCAACGCACTGCCTTAAAG+CGG | 0.642286 | 1_1:-5522527 | None:intergenic |
| TAACGTGATGAGAGATGACT+CGG | 0.642615 | 1_1:+5519663 | Msa0003060:CDS |
| GCAACAAGAACTTCATCACC+GGG | 0.643404 | 1_1:-5519228 | None:intergenic |
| AATGAGAGAAATGAAGGTGG+TGG | 0.643964 | 1_1:-5517207 | None:intergenic |
| ACTTGGTCGAAGAATTTGTG+AGG | 0.646457 | 1_1:-5517384 | None:intergenic |
| GAATAAGATTGACCTGCCAG+AGG | 0.647898 | 1_1:+5521824 | Msa0003060:CDS |
| TTAGCTGATTTAGCACGACC+CGG | 0.647936 | 1_1:+5519210 | Msa0003060:CDS |
| ATTGATATATTCTTAAGACA+AGG | 0.654996 | 1_1:+5522877 | Msa0003060:three_prime_UTR |
| AGGTTTAATGCGAAACGTGG+TGG | 0.659737 | 1_1:+5517651 | Msa0003060:CDS |
| GTAATCATCACCGTTCGTGG+CGG | 0.663242 | 1_1:+5517405 | Msa0003060:CDS |
| CAACGTCGGCTACAACTCGT+AGG | 0.664807 | 1_1:-5520162 | None:intergenic |
| CTAACTCCAATAACAGAGTG+AGG | 0.666857 | 1_1:-5522297 | None:intergenic |
| AGGCAAGACAAACTTAACAA+TGG | 0.673229 | 1_1:-5522942 | None:intergenic |
| AATAGGTTTAATGCGAAACG+TGG | 0.677121 | 1_1:+5517648 | Msa0003060:CDS |
| TTAAATGAGAGAAATGAAGG+TGG | 0.681222 | 1_1:-5517210 | None:intergenic |
| ACTTACAATTAAACCAACGT+CGG | 0.682305 | 1_1:-5520176 | None:intergenic |
| CCAAAAGGAAAAGAAACTTG+AGG | 0.687644 | 1_1:+5522263 | Msa0003060:CDS |
| CGTGGCACACTAGAAACCAA+CGG | 0.690574 | 1_1:-5522559 | None:intergenic |
| ACTAATGTGATGTCAAACGT+CGG | 0.693967 | 1_1:+5522727 | Msa0003060:three_prime_UTR |
| GATGAAGTTCTTGTTGCGAG+GGG | 0.705915 | 1_1:+5519234 | Msa0003060:CDS |
| ACAGTTGTGAAAAGCAAACG+GGG | 0.706082 | 1_1:+5519180 | Msa0003060:CDS |
| ATAGGATGCAAATCTCACCG+TGG | 0.830290 | 1_1:-5522577 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAATTTTTTTAATCTTTC+AGG | + | chr1_1:5520872-5520891 | Msa0003060:intron | 10.0% |
| !!! | ATAATTTTTTTAATCTTTCA+GGG | + | chr1_1:5520873-5520892 | Msa0003060:intron | 10.0% |
| !!! | AATTTCATTTTTTGATGTTA+TGG | + | chr1_1:5517768-5517787 | Msa0003060:intron | 15.0% |
| !!! | AATGTTGTTATGTTTTTATT+AGG | + | chr1_1:5518040-5518059 | Msa0003060:intron | 15.0% |
| !! | ATTATGTTTGATTAATTGAT+TGG | + | chr1_1:5518074-5518093 | Msa0003060:intron | 15.0% |
| !! | AATAATATCATATAAGATGT+TGG | - | chr1_1:5518312-5518331 | None:intergenic | 15.0% |
| !!! | TTATATTAGTTGACTTTTTT+GGG | - | chr1_1:5518586-5518605 | None:intergenic | 15.0% |
| !!! | TTTATATTAGTTGACTTTTT+TGG | - | chr1_1:5518587-5518606 | None:intergenic | 15.0% |
| !!! | AATCAAGTTTAGTTTTTTAT+GGG | - | chr1_1:5519126-5519145 | None:intergenic | 15.0% |
| !!! | AAATCAAGTTTAGTTTTTTA+TGG | - | chr1_1:5519127-5519146 | None:intergenic | 15.0% |
| !! | ATAAATAAATTCATACTCAT+TGG | + | chr1_1:5519432-5519451 | Msa0003060:intron | 15.0% |
| !!! | GTCTAAATCTTTTTTTAATA+TGG | + | chr1_1:5520441-5520460 | Msa0003060:intron | 15.0% |
| !! | TTTGCTTCTTAAAAAAATAA+TGG | - | chr1_1:5521102-5521121 | None:intergenic | 15.0% |
| !!! | ATTTTTTAACTTCATATCAA+TGG | - | chr1_1:5521392-5521411 | None:intergenic | 15.0% |
| !! | AAACTTGATTAAAAATTCAA+CGG | - | chr1_1:5521465-5521484 | None:intergenic | 15.0% |
| !!! | AATTTCCTATTATTTTGTAA+AGG | + | chr1_1:5521896-5521915 | Msa0003060:intron | 15.0% |
| !!! | ATTTCCTATTATTTTGTAAA+GGG | + | chr1_1:5521897-5521916 | Msa0003060:intron | 15.0% |
| !!! | TGTTCATTAATTTTAATTTC+AGG | + | chr1_1:5522122-5522141 | Msa0003060:intron | 15.0% |
| !! | TTTATTCGTAAGTACAAAAA+TGG | - | chr1_1:5518418-5518437 | None:intergenic | 20.0% |
| !! | TAACATTTAAGCTATACTTA+CGG | - | chr1_1:5518458-5518477 | None:intergenic | 20.0% |
| !! | AGTATAGCTTAAATGTTAAA+AGG | + | chr1_1:5518460-5518479 | Msa0003060:intron | 20.0% |
| !!! | ATGTCTTTTCATATTTTAAC+TGG | + | chr1_1:5518730-5518749 | Msa0003060:intron | 20.0% |
| !!! | AGTTTTAAAAACATTGATCA+TGG | + | chr1_1:5518769-5518788 | Msa0003060:intron | 20.0% |
| !! | AGTTTATTATTGTGAATTAC+AGG | + | chr1_1:5519156-5519175 | Msa0003060:intron | 20.0% |
| !!! | ATTTCATATTCAGTTTTATC+AGG | + | chr1_1:5519949-5519968 | Msa0003060:intron | 20.0% |
| !!! | GTTTTATCTTACATTAAGAT+AGG | - | chr1_1:5520071-5520090 | None:intergenic | 20.0% |
| !!! | CTGTAACAATTTTAAAATAC+AGG | - | chr1_1:5520095-5520114 | None:intergenic | 20.0% |
| !!! | CTGTATTTTAAAATTGTTAC+AGG | + | chr1_1:5520093-5520112 | Msa0003060:intron | 20.0% |
| !!! | TTTAAAATTGTTACAGGTTT+TGG | + | chr1_1:5520099-5520118 | Msa0003060:intron | 20.0% |
| !! | AATCTCAAAATTATCATCAT+TGG | - | chr1_1:5520313-5520332 | None:intergenic | 20.0% |
| !!! | ATGATAATTTTGAGATTTCT+GGG | + | chr1_1:5520316-5520335 | Msa0003060:intron | 20.0% |
| !! | TTAATATGGTGAACTAAAAT+TGG | + | chr1_1:5520455-5520474 | Msa0003060:intron | 20.0% |
| !! | ATATTTAATAAGCAGCTATA+TGG | - | chr1_1:5520855-5520874 | None:intergenic | 20.0% |
| !!! | TTTAGATTCAAGTTTTTTCT+TGG | + | chr1_1:5521024-5521043 | Msa0003060:intron | 20.0% |
| !!! | AAAAATAATGGAGTCTATAA+GGG | - | chr1_1:5521090-5521109 | None:intergenic | 20.0% |
| !!! | AAAAAATAATGGAGTCTATA+AGG | - | chr1_1:5521091-5521110 | None:intergenic | 20.0% |
| !! | ATGCAATCTATAAGATTATT+CGG | - | chr1_1:5521291-5521310 | None:intergenic | 20.0% |
| !! | TAAATTATCAGAGCTAATAA+AGG | - | chr1_1:5521527-5521546 | None:intergenic | 20.0% |
| !! | TTATTCAAAACAACAATGTA+TGG | - | chr1_1:5521810-5521829 | None:intergenic | 20.0% |
| !! | CATATTACAAGATAGTAATA+CGG | - | chr1_1:5522077-5522096 | None:intergenic | 20.0% |
| !!! | TTAATTTTAATTTCAGGTTG+AGG | + | chr1_1:5522128-5522147 | Msa0003060:intron | 20.0% |
| !! | ATTGATATATTCTTAAGACA+AGG | + | chr1_1:5522877-5522896 | Msa0003060:three_prime_UTR | 20.0% |
| !! | GTGCAAAATTTAATATTCAA+TGG | - | chr1_1:5522915-5522934 | None:intergenic | 20.0% |
| !! | TATTCAAAAGCTAAATAACT+TGG | - | chr1_1:5522983-5523002 | None:intergenic | 20.0% |
| ! | AAGTTAAATGAGAGAAATGA+AGG | - | chr1_1:5517216-5517235 | None:intergenic | 25.0% |
| !!! | GGTTTTTCAATTTCCTTTTT+GGG | - | chr1_1:5517465-5517484 | None:intergenic | 25.0% |
| !!! | TGGTTTTTCAATTTCCTTTT+TGG | - | chr1_1:5517466-5517485 | None:intergenic | 25.0% |
| !!! | GCTTTTTTCGTTTTTGATTT+TGG | - | chr1_1:5517486-5517505 | None:intergenic | 25.0% |
| ! | AAATTTGCAAACAAACCTAA+AGG | - | chr1_1:5517753-5517772 | None:intergenic | 25.0% |
| !!! | AAGCTATTTTTGATAACTTG+TGG | + | chr1_1:5517845-5517864 | Msa0003060:intron | 25.0% |
| !!! | TTTTTGATAACTTGTGGTTT+TGG | + | chr1_1:5517851-5517870 | Msa0003060:intron | 25.0% |
| ! | TTATAAGTTCTTCCAATTAG+TGG | + | chr1_1:5517916-5517935 | Msa0003060:intron | 25.0% |
| ! | GATATATAGACTGTCTAAAT+CGG | - | chr1_1:5517981-5518000 | None:intergenic | 25.0% |
| ! | GATTTACATTGTAATGTTAG+AGG | + | chr1_1:5518128-5518147 | Msa0003060:intron | 25.0% |
| ! | ATGTGGATAAGATTAGAATA+AGG | + | chr1_1:5518390-5518409 | Msa0003060:intron | 25.0% |
| ! | AACATTTAAGCTATACTTAC+GGG | - | chr1_1:5518457-5518476 | None:intergenic | 25.0% |
| !!! | ATAATAAGTACTGAAAAGTG+GGG | - | chr1_1:5518533-5518552 | None:intergenic | 25.0% |
| !!! | CATAATAAGTACTGAAAAGT+GGG | - | chr1_1:5518534-5518553 | None:intergenic | 25.0% |
| !!! | ACATAATAAGTACTGAAAAG+TGG | - | chr1_1:5518535-5518554 | None:intergenic | 25.0% |
| !!! | CAATGTTTTAAAAACTGAAC+TGG | + | chr1_1:5518615-5518634 | Msa0003060:intron | 25.0% |
| !! | AAAAGACATTTTTCACGATT+CGG | - | chr1_1:5518719-5518738 | None:intergenic | 25.0% |
| !!! | GATCAATGTTTTTAAAACTG+AGG | - | chr1_1:5518768-5518787 | None:intergenic | 25.0% |
| ! | ACAAAATTACTAACCATACA+TGG | - | chr1_1:5518962-5518981 | None:intergenic | 25.0% |
| ! | CACAATAATAAACTCAATGA+GGG | - | chr1_1:5519150-5519169 | None:intergenic | 25.0% |
| ! | TCACAATAATAAACTCAATG+AGG | - | chr1_1:5519151-5519170 | None:intergenic | 25.0% |
| ! | ACAACAATAATAACCAAGAT+AGG | - | chr1_1:5519549-5519568 | None:intergenic | 25.0% |
| ! | GAAATTTGGTTGATCAATTA+TGG | - | chr1_1:5519858-5519877 | None:intergenic | 25.0% |
| !!! | AAGTATTTTGGACAGAAATT+TGG | - | chr1_1:5519872-5519891 | None:intergenic | 25.0% |
| !! | TGACAAATTAGCAAGTATTT+TGG | - | chr1_1:5519884-5519903 | None:intergenic | 25.0% |
| ! | TGTTCAAAAACTATTGTTTC+TGG | - | chr1_1:5519996-5520015 | None:intergenic | 25.0% |
| ! | TTACATTAAGATAGGAACAA+AGG | - | chr1_1:5520063-5520082 | None:intergenic | 25.0% |
| ! | AACAAACAGAGAACTAAATA+AGG | - | chr1_1:5520221-5520240 | None:intergenic | 25.0% |
| ! | ATCTTCATAATAAATAACCG+TGG | + | chr1_1:5520251-5520270 | Msa0003060:intron | 25.0% |
| !!! | GATGATAATTTTGAGATTTC+TGG | + | chr1_1:5520315-5520334 | Msa0003060:intron | 25.0% |
| ! | ATTTCACTTGGACAAAAAAA+GGG | - | chr1_1:5520487-5520506 | None:intergenic | 25.0% |
| ! | AATTTCACTTGGACAAAAAA+AGG | - | chr1_1:5520488-5520507 | None:intergenic | 25.0% |
| !! | ATGAAGTTAATCTTGTTGTA+GGG | + | chr1_1:5520575-5520594 | Msa0003060:intron | 25.0% |
| ! | AAATGGATAATCAGCAATAT+CGG | - | chr1_1:5520654-5520673 | None:intergenic | 25.0% |
| ! | TTTGGCATTAATGTTGTAAA+TGG | - | chr1_1:5520671-5520690 | None:intergenic | 25.0% |
| !!! | AAGTTTTTTCTTGGTTTAAC+AGG | + | chr1_1:5521033-5521052 | Msa0003060:intron | 25.0% |
| ! | AAAGTGAAATATCCCTTTAA+AGG | - | chr1_1:5521345-5521364 | None:intergenic | 25.0% |
| ! | ATTGTGCATAAAGTAATTTG+TGG | + | chr1_1:5521671-5521690 | Msa0003060:intron | 25.0% |
| ! | TTAAAAACTCCAAAACATGA+GGG | - | chr1_1:5521716-5521735 | None:intergenic | 25.0% |
| ! | ATTAAAAACTCCAAAACATG+AGG | - | chr1_1:5521717-5521736 | None:intergenic | 25.0% |
| ! | ATAATTTCTTGAGTCAATGT+TGG | - | chr1_1:5522162-5522181 | None:intergenic | 25.0% |
| ! | AAATTAAAAGAAGTGACTCT+TGG | + | chr1_1:5522691-5522710 | Msa0003060:intron | 25.0% |
| TTAAATGAGAGAAATGAAGG+TGG | - | chr1_1:5517213-5517232 | None:intergenic | 30.0% | |
| AAGTTGAAGGAAGTGATTAT+TGG | - | chr1_1:5517256-5517275 | None:intergenic | 30.0% | |
| ! | TTTGTGTTGTTGGAATTTGA+AGG | - | chr1_1:5517289-5517308 | None:intergenic | 30.0% |
| ! | TTGTTATTCGTTTGTGTTGT+TGG | - | chr1_1:5517299-5517318 | None:intergenic | 30.0% |
| ! | TTTGTGAGGTTCTTTTGTTA+AGG | - | chr1_1:5517373-5517392 | None:intergenic | 30.0% |
| ACTAAACCAAAAACCCAAAA+AGG | + | chr1_1:5517449-5517468 | Msa0003060:CDS | 30.0% | |
| !!! | CAATTTCCTTTTTGGGTTTT+TGG | - | chr1_1:5517458-5517477 | None:intergenic | 30.0% |
| GTGATTATTTATGCTGATGA+AGG | + | chr1_1:5517594-5517613 | Msa0003060:CDS | 30.0% | |
| TGAAGGAAAAGATACGTTAT+TGG | + | chr1_1:5517611-5517630 | Msa0003060:CDS | 30.0% | |
| TGGAGTTTCATAGTAAGAAT+AGG | + | chr1_1:5517631-5517650 | Msa0003060:CDS | 30.0% | |
| !! | GTGTTTTTACTTCTTACTTG+AGG | + | chr1_1:5517691-5517710 | Msa0003060:intron | 30.0% |
| TTTACTTCTTACTTGAGGAA+TGG | + | chr1_1:5517696-5517715 | Msa0003060:intron | 30.0% | |
| !!! | GTTTTTGAGTTCATCATAGT+TGG | + | chr1_1:5518099-5518118 | Msa0003060:intron | 30.0% |
| CATTGTAATGTTAGAGGATT+TGG | + | chr1_1:5518134-5518153 | Msa0003060:intron | 30.0% | |
| !! | TCAAGTGTGTCACTTAATAT+GGG | - | chr1_1:5518180-5518199 | None:intergenic | 30.0% |
| TAGCTTAAATGTTAAAAGGC+TGG | + | chr1_1:5518464-5518483 | Msa0003060:intron | 30.0% | |
| TTAAATGTTAAAAGGCTGGA+GGG | + | chr1_1:5518468-5518487 | Msa0003060:intron | 30.0% | |
| !! | TAATAAGTACTGAAAAGTGG+GGG | - | chr1_1:5518532-5518551 | None:intergenic | 30.0% |
| TTTGAAAAGCAGTATAAGCA+TGG | - | chr1_1:5518654-5518673 | None:intergenic | 30.0% | |
| GTAAGACAGAATTTAACTGA+TGG | - | chr1_1:5518931-5518950 | None:intergenic | 30.0% | |
| TAAATTCTGTCTTACCACTT+TGG | + | chr1_1:5518936-5518955 | Msa0003060:intron | 30.0% | |
| GAAGCAATTTATTCACGAAA+TGG | - | chr1_1:5518993-5519012 | None:intergenic | 30.0% | |
| CAGAAAATGAAACGAAAACA+AGG | - | chr1_1:5519052-5519071 | None:intergenic | 30.0% | |
| TAAGTTGTACAGATTCACAT+TGG | + | chr1_1:5519376-5519395 | Msa0003060:intron | 30.0% | |
| ATCAACATTATCTTCTTTCC+TGG | + | chr1_1:5519501-5519520 | Msa0003060:intron | 30.0% | |
| !! | TTCCTGGAAAGTATTAGTTA+TGG | + | chr1_1:5519517-5519536 | Msa0003060:intron | 30.0% |
| AACCATAACTAATACTTTCC+AGG | - | chr1_1:5519522-5519541 | None:intergenic | 30.0% | |
| ATTGAAGGATTGAATCAACA+AGG | + | chr1_1:5519782-5519801 | Msa0003060:intron | 30.0% | |
| TCTCTCAGTTCAATTAATGT+TGG | + | chr1_1:5519817-5519836 | Msa0003060:intron | 30.0% | |
| ACTTACAATTAAACCAACGT+CGG | - | chr1_1:5520179-5520198 | None:intergenic | 30.0% | |
| CACAATCTTCACTAAAATCA+TGG | - | chr1_1:5520362-5520381 | None:intergenic | 30.0% | |
| !! | GATTTTAGTGAAGATTGTGA+AGG | + | chr1_1:5520363-5520382 | Msa0003060:intron | 30.0% |
| ! | GATGAAGTTAATCTTGTTGT+AGG | + | chr1_1:5520574-5520593 | Msa0003060:intron | 30.0% |
| AATGGATAATCAGCAATATC+GGG | - | chr1_1:5520653-5520672 | None:intergenic | 30.0% | |
| ACAACATTAATGCCAAATCT+TGG | + | chr1_1:5520674-5520693 | Msa0003060:CDS | 30.0% | |
| CAGCTATATGGTTTAAAAGA+TGG | - | chr1_1:5520843-5520862 | None:intergenic | 30.0% | |
| ! | TTTTTAATCTTTCAGGGTCT+TGG | + | chr1_1:5520879-5520898 | Msa0003060:intron | 30.0% |
| !!! | ATTTTTTGAGGCATCTAAGA+AGG | + | chr1_1:5520907-5520926 | Msa0003060:CDS | 30.0% |
| ATTCTTCAACAATCAGAGAA+GGG | + | chr1_1:5521309-5521328 | Msa0003060:intron | 30.0% | |
| !! | AAAGGGATATTTCACTTTTG+AGG | + | chr1_1:5521347-5521366 | Msa0003060:intron | 30.0% |
| !!! | CAAGTTTTTAGTCAAATGCT+TGG | + | chr1_1:5521478-5521497 | Msa0003060:intron | 30.0% |
| !! | TTTTTAGTCAAATGCTTGGA+AGG | + | chr1_1:5521482-5521501 | Msa0003060:intron | 30.0% |
| ! | TTTTAGTCAAATGCTTGGAA+GGG | + | chr1_1:5521483-5521502 | Msa0003060:intron | 30.0% |
| AATTTGTGGCTATCAATAGA+TGG | - | chr1_1:5521559-5521578 | None:intergenic | 30.0% | |
| AAGAACAAACAGCAAATTTG+TGG | - | chr1_1:5521573-5521592 | None:intergenic | 30.0% | |
| ! | TTTCCTCTTTCTTTTGCTTT+TGG | + | chr1_1:5521598-5521617 | Msa0003060:intron | 30.0% |
| AATCCAAAAGCAAAAGAAAG+AGG | - | chr1_1:5521604-5521623 | None:intergenic | 30.0% | |
| ! | TCATTCTAATTCTGTTTTGC+AGG | + | chr1_1:5521749-5521768 | Msa0003060:intron | 30.0% |
| TATACTCAAACTCAGATTGA+GGG | - | chr1_1:5521870-5521889 | None:intergenic | 30.0% | |
| ATATACTCAAACTCAGATTG+AGG | - | chr1_1:5521871-5521890 | None:intergenic | 30.0% | |
| !! | TCCTATTATTTTGTAAAGGG+AGG | + | chr1_1:5521900-5521919 | Msa0003060:intron | 30.0% |
| TACAAGATAGTAATACGGAA+GGG | - | chr1_1:5522072-5522091 | None:intergenic | 30.0% | |
| TTACAAGATAGTAATACGGA+AGG | - | chr1_1:5522073-5522092 | None:intergenic | 30.0% | |
| TGTGAAATGAAATGCTATGA+AGG | - | chr1_1:5522378-5522397 | None:intergenic | 30.0% | |
| AGACTACTCATAATTTGGTT+CGG | + | chr1_1:5522640-5522659 | Msa0003060:three_prime_UTR | 30.0% | |
| CTTGGAGAAAAATGAATACA+AGG | - | chr1_1:5522965-5522984 | None:intergenic | 30.0% | |
| ATACCTGTAATTCCATGAAA+TGG | + | chr1_1:5523000-5523019 | Msa0003060:three_prime_UTR | 30.0% | |
| ACAACTATTGATCCATGAAT+AGG | - | chr1_1:5523034-5523053 | None:intergenic | 30.0% | |
| ! | ATTATTGGAAAAGCGCGTTT+CGG | - | chr1_1:5517241-5517260 | None:intergenic | 35.0% |
| TGGAATTTGAAGGTTCTTTG+TGG | - | chr1_1:5517279-5517298 | None:intergenic | 35.0% | |
| ! | TCTTTTGTTAAGGCTGTTGA+TGG | - | chr1_1:5517363-5517382 | None:intergenic | 35.0% |
| !! | CGTTGAAGAGAGATTTTGAT+GGG | + | chr1_1:5517535-5517554 | Msa0003060:CDS | 35.0% |
| AATAGGTTTAATGCGAAACG+TGG | + | chr1_1:5517648-5517667 | Msa0003060:CDS | 35.0% | |
| ! | TTTGATGTTATGGCTCTGTT+TGG | + | chr1_1:5517778-5517797 | Msa0003060:intron | 35.0% |
| ! | ATGGCTCTGTTTGGATAAAT+AGG | + | chr1_1:5517787-5517806 | Msa0003060:intron | 35.0% |
| ! | TGGCTCTGTTTGGATAAATA+GGG | + | chr1_1:5517788-5517807 | Msa0003060:intron | 35.0% |
| !! | GTCAAGTGTGTCACTTAATA+TGG | - | chr1_1:5518181-5518200 | None:intergenic | 35.0% |
| CATTGTACTCCATTCTATGT+TGG | + | chr1_1:5518365-5518384 | Msa0003060:intron | 35.0% | |
| TCCATTCTATGTTGGAAATG+TGG | + | chr1_1:5518373-5518392 | Msa0003060:intron | 35.0% | |
| TCCACATTTCCAACATAGAA+TGG | - | chr1_1:5518377-5518396 | None:intergenic | 35.0% | |
| CTTAAATGTTAAAAGGCTGG+AGG | + | chr1_1:5518467-5518486 | Msa0003060:intron | 35.0% | |
| ! | GCTTTTCAAATGCTAGAATC+CGG | + | chr1_1:5518664-5518683 | Msa0003060:intron | 35.0% |
| !! | GAATTGATGACAGTTTTGTC+CGG | - | chr1_1:5518686-5518705 | None:intergenic | 35.0% |
| CGGCTAGATTATGTCTTAAA+TGG | - | chr1_1:5519352-5519371 | None:intergenic | 35.0% | |
| TTAAGACATAATCTAGCCGT+AGG | + | chr1_1:5519353-5519372 | Msa0003060:intron | 35.0% | |
| GAATCTGTACAACTTACCTA+CGG | - | chr1_1:5519372-5519391 | None:intergenic | 35.0% | |
| GGTAATGTACTCTGTAACTA+AGG | + | chr1_1:5519453-5519472 | Msa0003060:intron | 35.0% | |
| !! | TGTTGATACAGTAGTTCTGA+AGG | - | chr1_1:5519488-5519507 | None:intergenic | 35.0% |
| GTTATGGTTTACACCTATCT+TGG | + | chr1_1:5519533-5519552 | Msa0003060:intron | 35.0% | |
| GCATTTCTAACAAGCTAATC+TGG | - | chr1_1:5519606-5519625 | None:intergenic | 35.0% | |
| !! | TTAGCTTGTTAGAAATGCCA+CGG | + | chr1_1:5519608-5519627 | Msa0003060:CDS | 35.0% |
| !!! | GTTTTTTTCCTATTATGCCG+TGG | - | chr1_1:5519628-5519647 | None:intergenic | 35.0% |
| CCTAATGAAGTCTCTAATGA+TGG | - | chr1_1:5519757-5519776 | None:intergenic | 35.0% | |
| CCATCATTAGAGACTTCATT+AGG | + | chr1_1:5519754-5519773 | Msa0003060:intron | 35.0% | |
| CTTCATTAGGCATGTATTGA+AGG | + | chr1_1:5519767-5519786 | Msa0003060:intron | 35.0% | |
| ATTAATTGAACTGAGAGAGC+AGG | - | chr1_1:5519815-5519834 | None:intergenic | 35.0% | |
| ATCATAGTTCCAGAGAGATT+TGG | - | chr1_1:5519917-5519936 | None:intergenic | 35.0% | |
| !!! | TTGTTACAGGTTTTGGTTCA+TGG | + | chr1_1:5520106-5520125 | Msa0003060:intron | 35.0% |
| TTTGTCCAAGTGAAATTCGT+TGG | + | chr1_1:5520491-5520510 | Msa0003060:intron | 35.0% | |
| CAGTTCTGTAGTCATTTACA+GGG | - | chr1_1:5520974-5520993 | None:intergenic | 35.0% | |
| ACAGTTCTGTAGTCATTTAC+AGG | - | chr1_1:5520975-5520994 | None:intergenic | 35.0% | |
| AACAGGTTTACTTGAAGTTG+TGG | + | chr1_1:5521050-5521069 | Msa0003060:intron | 35.0% | |
| ACAGGTTTACTTGAAGTTGT+GGG | + | chr1_1:5521051-5521070 | Msa0003060:intron | 35.0% | |
| !!! | TACCTTTTGCTGTTCACTAT+TGG | - | chr1_1:5521141-5521160 | None:intergenic | 35.0% |
| !!! | TGTTGGTTTTTCTAGTCATG+GGG | - | chr1_1:5521227-5521246 | None:intergenic | 35.0% |
| !!! | GTGTTGGTTTTTCTAGTCAT+GGG | - | chr1_1:5521228-5521247 | None:intergenic | 35.0% |
| !!! | TGTGTTGGTTTTTCTAGTCA+TGG | - | chr1_1:5521229-5521248 | None:intergenic | 35.0% |
| !! | GGTACTCGTTTGATTAGTTT+GGG | - | chr1_1:5521270-5521289 | None:intergenic | 35.0% |
| CATTCTTCAACAATCAGAGA+AGG | + | chr1_1:5521308-5521327 | Msa0003060:intron | 35.0% | |
| TTCTTCAACAATCAGAGAAG+GGG | + | chr1_1:5521310-5521329 | Msa0003060:intron | 35.0% | |
| ! | GGGAATTTGGTTCCTTTAAA+GGG | + | chr1_1:5521330-5521349 | Msa0003060:intron | 35.0% |
| ACTTCATATCAATGGTTGAG+AGG | - | chr1_1:5521384-5521403 | None:intergenic | 35.0% | |
| CGGCAAACATTATGTATACA+TGG | - | chr1_1:5521445-5521464 | None:intergenic | 35.0% | |
| CAAAACATGAGGGAAATGAT+AGG | - | chr1_1:5521706-5521725 | None:intergenic | 35.0% | |
| ! | CTATCATTTCCCTCATGTTT+TGG | + | chr1_1:5521704-5521723 | Msa0003060:intron | 35.0% |
| GCCTCCCTTTACAAAATAAT+AGG | - | chr1_1:5521904-5521923 | None:intergenic | 35.0% | |
| !! | AAAACCAAGCTCTGAAGTTT+CGG | + | chr1_1:5522215-5522234 | Msa0003060:CDS | 35.0% |
| ! | CCTCAAGTTTCTTTTCCTTT+TGG | - | chr1_1:5522266-5522285 | None:intergenic | 35.0% |
| CCAAAAGGAAAAGAAACTTG+AGG | + | chr1_1:5522263-5522282 | Msa0003060:CDS | 35.0% | |
| ! | TACTTTTCATAGTACCCAGT+CGG | + | chr1_1:5522430-5522449 | Msa0003060:intron | 35.0% |
| ! | TTATTGCAGAAAGCGTATCA+TGG | + | chr1_1:5522477-5522496 | Msa0003060:intron | 35.0% |
| CGAGATGTTAAAGGAGATAA+GGG | + | chr1_1:5522504-5522523 | Msa0003060:CDS | 35.0% | |
| GCAAGTGTTTGACAAAGTAT+AGG | - | chr1_1:5522598-5522617 | None:intergenic | 35.0% | |
| GGCAAAGACTACTCATAATT+TGG | + | chr1_1:5522635-5522654 | Msa0003060:three_prime_UTR | 35.0% | |
| ! | GACTACTCATAATTTGGTTC+GGG | + | chr1_1:5522641-5522660 | Msa0003060:three_prime_UTR | 35.0% |
| ACTAATGTGATGTCAAACGT+CGG | + | chr1_1:5522727-5522746 | Msa0003060:three_prime_UTR | 35.0% | |
| AGGCAAGACAAACTTAACAA+TGG | - | chr1_1:5522945-5522964 | None:intergenic | 35.0% | |
| CTACCATTTCATGGAATTAC+AGG | - | chr1_1:5523006-5523025 | None:intergenic | 35.0% | |
| AATGAGAGAAATGAAGGTGG+TGG | - | chr1_1:5517210-5517229 | None:intergenic | 40.0% | |
| ! | TTATTGGAAAAGCGCGTTTC+GGG | - | chr1_1:5517240-5517259 | None:intergenic | 40.0% |
| AGGTTCTTTGTGGAAGTTGA+AGG | - | chr1_1:5517269-5517288 | None:intergenic | 40.0% | |
| ! | TTTGTTAAGGCTGTTGATGG+TGG | - | chr1_1:5517360-5517379 | None:intergenic | 40.0% |
| ACTTGGTCGAAGAATTTGTG+AGG | - | chr1_1:5517387-5517406 | None:intergenic | 40.0% | |
| ! | GCGTTGAAGAGAGATTTTGA+TGG | + | chr1_1:5517534-5517553 | Msa0003060:CDS | 40.0% |
| TGGGTCTTTGATACTTCCAA+TGG | + | chr1_1:5517554-5517573 | Msa0003060:CDS | 40.0% | |
| GGGTCTTTGATACTTCCAAT+GGG | + | chr1_1:5517555-5517574 | Msa0003060:CDS | 40.0% | |
| TCTTTGATACTTCCAATGGG+TGG | + | chr1_1:5517558-5517577 | Msa0003060:CDS | 40.0% | |
| GTTCGTATTCCTGTTCCTTT+AGG | + | chr1_1:5517735-5517754 | Msa0003060:intron | 40.0% | |
| GCAAACAAACCTAAAGGAAC+AGG | - | chr1_1:5517747-5517766 | None:intergenic | 40.0% | |
| !! | CTTCCAATTAGTGGTGTTAC+AGG | + | chr1_1:5517925-5517944 | Msa0003060:intron | 40.0% |
| !! | CTAGTGTTGCTTCTATGTGA+AGG | + | chr1_1:5518015-5518034 | Msa0003060:intron | 40.0% |
| !! | GTGTGTCACTTAATATGGGA+CGG | - | chr1_1:5518176-5518195 | None:intergenic | 40.0% |
| TGGAGGGACATTTGATATGT+TGG | + | chr1_1:5518484-5518503 | Msa0003060:intron | 40.0% | |
| GCACAGTTGTGAAAAGCAAA+CGG | + | chr1_1:5519178-5519197 | Msa0003060:CDS | 40.0% | |
| CACAGTTGTGAAAAGCAAAC+GGG | + | chr1_1:5519179-5519198 | Msa0003060:CDS | 40.0% | |
| ACAGTTGTGAAAAGCAAACG+GGG | + | chr1_1:5519180-5519199 | Msa0003060:CDS | 40.0% | |
| TGATGAAGTTCTTGTTGCGA+GGG | + | chr1_1:5519233-5519252 | Msa0003060:CDS | 40.0% | |
| GTTGTACAGATTCACATTGG+TGG | + | chr1_1:5519379-5519398 | Msa0003060:intron | 40.0% | |
| TAGAAATGCCACGGCATAAT+AGG | + | chr1_1:5519617-5519636 | Msa0003060:CDS | 40.0% | |
| TAACGTGATGAGAGATGACT+CGG | + | chr1_1:5519663-5519682 | Msa0003060:CDS | 40.0% | |
| CTTACTTGATTGCATCTCTC+TGG | + | chr1_1:5519728-5519747 | Msa0003060:intron | 40.0% | |
| TATTTCCGTCCAAATCTCTC+TGG | + | chr1_1:5519905-5519924 | Msa0003060:intron | 40.0% | |
| TAGTTCCAGAGAGATTTGGA+CGG | - | chr1_1:5519913-5519932 | None:intergenic | 40.0% | |
| !!! | TTTTGGTTCATGGTCAACCT+GGG | + | chr1_1:5520116-5520135 | Msa0003060:CDS | 40.0% |
| AACCACTCATCAACATTCCA+CGG | - | chr1_1:5520271-5520290 | None:intergenic | 40.0% | |
| GAAGATTGTGAAGGATAGTG+TGG | + | chr1_1:5520372-5520391 | Msa0003060:intron | 40.0% | |
| !! | GATGTGTTCTAAAGCATGAG+TGG | + | chr1_1:5520396-5520415 | Msa0003060:intron | 40.0% |
| TACAGCCAACGAATTTCACT+TGG | - | chr1_1:5520499-5520518 | None:intergenic | 40.0% | |
| GTGAAAGACTGCTTTGTAGA+AGG | + | chr1_1:5520525-5520544 | Msa0003060:intron | 40.0% | |
| ! | GTATTCGTCTGAAGCTACAT+TGG | + | chr1_1:5520733-5520752 | Msa0003060:CDS | 40.0% |
| !! | GATTTGCCTGGTCTTATAGA+AGG | + | chr1_1:5520758-5520777 | Msa0003060:CDS | 40.0% |
| !! | TCTTATAGAAGGTGCTCACT+TGG | + | chr1_1:5520769-5520788 | Msa0003060:CDS | 40.0% |
| !! | CTTATAGAAGGTGCTCACTT+GGG | + | chr1_1:5520770-5520789 | Msa0003060:CDS | 40.0% |
| !!! | GTCTTGGTCGCAATTTTTTG+AGG | + | chr1_1:5520895-5520914 | Msa0003060:CDS | 40.0% |
| CAGTAGATGTGTCAACAACA+TGG | - | chr1_1:5520947-5520966 | None:intergenic | 40.0% | |
| TACTTGAAGTTGTGGGTGTT+TGG | + | chr1_1:5521058-5521077 | Msa0003060:intron | 40.0% | |
| CACCAATAGTGAACAGCAAA+AGG | + | chr1_1:5521136-5521155 | Msa0003060:intron | 40.0% | |
| ! | TGAACAGCAAAAGGTATGCT+AGG | + | chr1_1:5521145-5521164 | Msa0003060:intron | 40.0% |
| !!! | GTTGGTTTTTCTAGTCATGG+GGG | - | chr1_1:5521226-5521245 | None:intergenic | 40.0% |
| !!! | TTGGGATTTTTTGTGCGTTG+AGG | - | chr1_1:5521252-5521271 | None:intergenic | 40.0% |
| ! | CGGTACTCGTTTGATTAGTT+TGG | - | chr1_1:5521271-5521290 | None:intergenic | 40.0% |
| ACAATCAGAGAAGGGGAATT+TGG | + | chr1_1:5521317-5521336 | Msa0003060:intron | 40.0% | |
| ! | GGGGAATTTGGTTCCTTTAA+AGG | + | chr1_1:5521329-5521348 | Msa0003060:intron | 40.0% |
| TGCTTGGAAGGGAGTTTAAT+TGG | + | chr1_1:5521494-5521513 | Msa0003060:intron | 40.0% | |
| TTGGATTGTGAGTCAAAAGC+AGG | + | chr1_1:5521617-5521636 | Msa0003060:intron | 40.0% | |
| ACATGAGGGAAATGATAGGT+TGG | - | chr1_1:5521702-5521721 | None:intergenic | 40.0% | |
| CAACAATGTATGGTCGTTCA+AGG | - | chr1_1:5521800-5521819 | None:intergenic | 40.0% | |
| AGTAGGAAACTACATACCTC+TGG | - | chr1_1:5521843-5521862 | None:intergenic | 40.0% | |
| CTCAGATTGAGGGTAATAGT+AGG | - | chr1_1:5521860-5521879 | None:intergenic | 40.0% | |
| TCACTAGACTACGCAATGAT+GGG | - | chr1_1:5521946-5521965 | None:intergenic | 40.0% | |
| ATCATTGCGTAGTCTAGTGA+GGG | + | chr1_1:5521946-5521965 | Msa0003060:intron | 40.0% | |
| AGACATTTAGCCCCTGAAAT+GGG | + | chr1_1:5521971-5521990 | Msa0003060:intron | 40.0% | |
| ! | GTTTCTACATCTAGAACCCA+AGG | + | chr1_1:5522001-5522020 | Msa0003060:intron | 40.0% |
| ! | GAAACTTCAGAGCTTGGTTT+TGG | - | chr1_1:5522216-5522235 | None:intergenic | 40.0% |
| GACTGAAGAAAGTGACCAAA+AGG | + | chr1_1:5522248-5522267 | Msa0003060:CDS | 40.0% | |
| CTAACTCCAATAACAGAGTG+AGG | - | chr1_1:5522300-5522319 | None:intergenic | 40.0% | |
| !! | AATTTTGACCTAAGCCGACT+GGG | - | chr1_1:5522447-5522466 | None:intergenic | 40.0% |
| !! | AAATTTTGACCTAAGCCGAC+TGG | - | chr1_1:5522448-5522467 | None:intergenic | 40.0% |
| CATGGTTAGCGAGATGTTAA+AGG | + | chr1_1:5522495-5522514 | Msa0003060:CDS | 40.0% | |
| GCGAGATGTTAAAGGAGATA+AGG | + | chr1_1:5522503-5522522 | Msa0003060:CDS | 40.0% | |
| GTCAAACACTTGCAGTTCAA+CGG | + | chr1_1:5522605-5522624 | Msa0003060:three_prime_UTR | 40.0% | |
| !!! | GAAGTGACTCTTGGTTTTAG+AGG | + | chr1_1:5522700-5522719 | Msa0003060:intron | 40.0% |
| ATCAAGTGATAGTCCAATCC+TGG | + | chr1_1:5522757-5522776 | Msa0003060:three_prime_UTR | 40.0% | |
| ! | CAAAATCTAAGGTCCAGGAT+TGG | - | chr1_1:5522773-5522792 | None:intergenic | 40.0% |
| CTTGCTCGCAACAAAATCTA+AGG | - | chr1_1:5522784-5522803 | None:intergenic | 40.0% | |
| ! | CTTAGATTTTGTTGCGAGCA+AGG | + | chr1_1:5522782-5522801 | Msa0003060:three_prime_UTR | 40.0% |
| TGGTAGTTGCGTAGGGTTTA+AGG | - | chr1_1:5517340-5517359 | None:intergenic | 45.0% | |
| !! | TTGATGGTGGTAGTTGCGTA+GGG | - | chr1_1:5517347-5517366 | None:intergenic | 45.0% |
| CACGAACGGTGATGATTACT+TGG | - | chr1_1:5517404-5517423 | None:intergenic | 45.0% | |
| CAAGTAATCATCACCGTTCG+TGG | + | chr1_1:5517402-5517421 | Msa0003060:CDS | 45.0% | |
| ATACTTCCAATGGGTGGTCA+TGG | + | chr1_1:5517564-5517583 | Msa0003060:CDS | 45.0% | |
| AGGTTTAATGCGAAACGTGG+TGG | + | chr1_1:5517651-5517670 | Msa0003060:CDS | 45.0% | |
| ! | GGTGGTAATGTTGATGCTGT+TGG | + | chr1_1:5517669-5517688 | Msa0003060:CDS | 45.0% |
| GGAACAGGAATACGAACAGT+AGG | - | chr1_1:5517732-5517751 | None:intergenic | 45.0% | |
| GCACCTGTAACACCACTAAT+TGG | - | chr1_1:5517931-5517950 | None:intergenic | 45.0% | |
| GTCACTTAATATGGGACGGA+GGG | - | chr1_1:5518172-5518191 | None:intergenic | 45.0% | |
| ! | TGTCACTTAATATGGGACGG+AGG | - | chr1_1:5518173-5518192 | None:intergenic | 45.0% |
| ACTGAACTGGTGTGAACACT+AGG | + | chr1_1:5518628-5518647 | Msa0003060:intron | 45.0% | |
| CTTACCACTTTGGCCATGTA+TGG | + | chr1_1:5518946-5518965 | Msa0003060:intron | 45.0% | |
| CTAACCATACATGGCCAAAG+TGG | - | chr1_1:5518953-5518972 | None:intergenic | 45.0% | |
| ! | TTAGCTGATTTAGCACGACC+CGG | + | chr1_1:5519210-5519229 | Msa0003060:CDS | 45.0% |
| GCAACAAGAACTTCATCACC+GGG | - | chr1_1:5519231-5519250 | None:intergenic | 45.0% | |
| CGCAACAAGAACTTCATCAC+CGG | - | chr1_1:5519232-5519251 | None:intergenic | 45.0% | |
| GTGATGAAGTTCTTGTTGCG+AGG | + | chr1_1:5519232-5519251 | Msa0003060:CDS | 45.0% | |
| GATGAAGTTCTTGTTGCGAG+GGG | + | chr1_1:5519234-5519253 | Msa0003060:CDS | 45.0% | |
| ! | GATGAGAGATGACTCGGATA+AGG | + | chr1_1:5519669-5519688 | Msa0003060:CDS | 45.0% |
| !!! | GTTTTGGTTCATGGTCAACC+TGG | + | chr1_1:5520115-5520134 | Msa0003060:CDS | 45.0% |
| ! | TTTGGTTCATGGTCAACCTG+GGG | + | chr1_1:5520117-5520136 | Msa0003060:CDS | 45.0% |
| ! | AACCGTGGAATGTTGATGAG+TGG | + | chr1_1:5520266-5520285 | Msa0003060:intron | 45.0% |
| TTGTAGGGACTTCCAAATGC+TGG | + | chr1_1:5520590-5520609 | Msa0003060:intron | 45.0% | |
| TGTAGGGACTTCCAAATGCT+GGG | + | chr1_1:5520591-5520610 | Msa0003060:intron | 45.0% | |
| !! | AGCGTTGATTTCCCAGCATT+TGG | - | chr1_1:5520605-5520624 | None:intergenic | 45.0% |
| !! | CTTGATGGTGATCCCAACTT+GGG | + | chr1_1:5520701-5520720 | Msa0003060:CDS | 45.0% |
| TGAGCACCTTCTATAAGACC+AGG | - | chr1_1:5520767-5520786 | None:intergenic | 45.0% | |
| !! | TCTGCATCGTTTTTGCAGTG+GGG | - | chr1_1:5521186-5521205 | None:intergenic | 45.0% |
| !! | GTCTGCATCGTTTTTGCAGT+GGG | - | chr1_1:5521187-5521206 | None:intergenic | 45.0% |
| !! | TGTCTGCATCGTTTTTGCAG+TGG | - | chr1_1:5521188-5521207 | None:intergenic | 45.0% |
| ! | TTTTGTGCGTTGAGGTGTGT+TGG | - | chr1_1:5521244-5521263 | None:intergenic | 45.0% |
| ! | TATGGTCGTTCAAGGTACTC+AGG | - | chr1_1:5521792-5521811 | None:intergenic | 45.0% |
| GAATAAGATTGACCTGCCAG+AGG | + | chr1_1:5521824-5521843 | Msa0003060:CDS | 45.0% | |
| CTCACTAGACTACGCAATGA+TGG | - | chr1_1:5521947-5521966 | None:intergenic | 45.0% | |
| CATCATTGCGTAGTCTAGTG+AGG | + | chr1_1:5521945-5521964 | Msa0003060:intron | 45.0% | |
| CAGACATTTAGCCCCTGAAA+TGG | + | chr1_1:5521970-5521989 | Msa0003060:intron | 45.0% | |
| AAACAGAGCCTCCCATTTCA+GGG | - | chr1_1:5521985-5522004 | None:intergenic | 45.0% | |
| ATGGTAAAGTAGACGCCATG+TGG | - | chr1_1:5522035-5522054 | None:intergenic | 45.0% | |
| TAATACGGAAGGGTGAGCTT+TGG | - | chr1_1:5522062-5522081 | None:intergenic | 45.0% | |
| ATCAACGCACTGCCTTAAAG+CGG | - | chr1_1:5522530-5522549 | None:intergenic | 45.0% | |
| ACTAGAAACCAACGGTTCCT+TGG | - | chr1_1:5522554-5522573 | None:intergenic | 45.0% | |
| ATAGGATGCAAATCTCACCG+TGG | - | chr1_1:5522580-5522599 | None:intergenic | 45.0% | |
| ! | CGCAACAAAATCTAAGGTCC+AGG | - | chr1_1:5522778-5522797 | None:intergenic | 45.0% |
| !! | GTTGATGGTGGTAGTTGCGT+AGG | - | chr1_1:5517348-5517367 | None:intergenic | 50.0% |
| GTAATCATCACCGTTCGTGG+CGG | + | chr1_1:5517405-5517424 | Msa0003060:CDS | 50.0% | |
| ACCTGGGGAGGAAGTTAAGT+TGG | + | chr1_1:5520132-5520151 | Msa0003060:CDS | 50.0% | |
| TCCAACTTAACTTCCTCCCC+AGG | - | chr1_1:5520136-5520155 | None:intergenic | 50.0% | |
| TGCTGGGAAATCAACGCTTC+TGG | + | chr1_1:5520607-5520626 | Msa0003060:CDS | 50.0% | |
| ATCGGGTTTCGCAAGCGTAA+TGG | - | chr1_1:5520636-5520655 | None:intergenic | 50.0% | |
| ! | CCATCAAGGCGTCCAAGATT+TGG | - | chr1_1:5520689-5520708 | None:intergenic | 50.0% |
| CCAAATCTTGGACGCCTTGA+TGG | + | chr1_1:5520686-5520705 | Msa0003060:CDS | 50.0% | |
| ! | CCAAGTTGGGATCACCATCA+AGG | - | chr1_1:5520703-5520722 | None:intergenic | 50.0% |
| !! | CCTTGATGGTGATCCCAACT+TGG | + | chr1_1:5520700-5520719 | Msa0003060:CDS | 50.0% |
| TACATCCCTGCTCCCAAGTT+GGG | - | chr1_1:5520716-5520735 | None:intergenic | 50.0% | |
| ATACATCCCTGCTCCCAAGT+TGG | - | chr1_1:5520717-5520736 | None:intergenic | 50.0% | |
| GCTACATTGGCAGATTTGCC+TGG | + | chr1_1:5520746-5520765 | Msa0003060:CDS | 50.0% | |
| !! | AGAAGGTGCTCACTTGGGAA+AGG | + | chr1_1:5520775-5520794 | Msa0003060:CDS | 50.0% |
| ! | TGAGGCATCTAAGAAGGACC+CGG | + | chr1_1:5520913-5520932 | Msa0003060:CDS | 50.0% |
| AACAACATGGACCAGTAGCC+GGG | - | chr1_1:5520934-5520953 | None:intergenic | 50.0% | |
| CAACAACATGGACCAGTAGC+CGG | - | chr1_1:5520935-5520954 | None:intergenic | 50.0% | |
| GGAAACTACATACCTCTGGC+AGG | - | chr1_1:5521839-5521858 | None:intergenic | 50.0% | |
| CATTTAGCCCCTGAAATGGG+AGG | + | chr1_1:5521974-5521993 | Msa0003060:intron | 50.0% | |
| AACAGAGCCTCCCATTTCAG+GGG | - | chr1_1:5521984-5522003 | None:intergenic | 50.0% | |
| GAAACAGAGCCTCCCATTTC+AGG | - | chr1_1:5521986-5522005 | None:intergenic | 50.0% | |
| TGAGCCGAAACTTCAGAGCT+TGG | - | chr1_1:5522222-5522241 | None:intergenic | 50.0% | |
| CCAATAACAGAGTGAGGTCG+TGG | - | chr1_1:5522294-5522313 | None:intergenic | 50.0% | |
| CCACGACCTCACTCTGTTAT+TGG | + | chr1_1:5522291-5522310 | Msa0003060:CDS | 50.0% | |
| ! | TCATAGTACCCAGTCGGCTT+AGG | + | chr1_1:5522436-5522455 | Msa0003060:intron | 50.0% |
| ! | AGGAGATAAGGGCCGCTTTA+AGG | + | chr1_1:5522515-5522534 | Msa0003060:CDS | 50.0% |
| !! | AAGGCAGTGCGTTGATTCCA+AGG | + | chr1_1:5522534-5522553 | Msa0003060:CDS | 50.0% |
| !! | CGTTGATTCCAAGGAACCGT+TGG | + | chr1_1:5522543-5522562 | Msa0003060:CDS | 50.0% |
| CGTGGCACACTAGAAACCAA+CGG | - | chr1_1:5522562-5522581 | None:intergenic | 50.0% | |
| !! | CGTTGGTTTCTAGTGTGCCA+CGG | + | chr1_1:5522560-5522579 | Msa0003060:CDS | 50.0% |
| TTGCAGTTCAACGGCGCTTT+CGG | + | chr1_1:5522614-5522633 | Msa0003060:three_prime_UTR | 50.0% | |
| ! | TAGGCGTCGCTACCATTTCA+TGG | - | chr1_1:5523015-5523034 | None:intergenic | 50.0% |
| ! | ATGGTAGCGACGCCTATTCA+TGG | + | chr1_1:5523019-5523038 | Msa0003060:three_prime_UTR | 50.0% |
| CTTCCAATGGGTGGTCATGG+TGG | + | chr1_1:5517567-5517586 | Msa0003060:CDS | 55.0% | |
| TCACCACCATGACCACCCAT+TGG | - | chr1_1:5517573-5517592 | None:intergenic | 55.0% | |
| GAAGTTCTTGTTGCGAGGGG+TGG | + | chr1_1:5519237-5519256 | Msa0003060:CDS | 55.0% | |
| ! | CAACGTCGGCTACAACTCGT+AGG | - | chr1_1:5520165-5520184 | None:intergenic | 55.0% |
| CTACGAGTTGTAGCCGACGT+TGG | + | chr1_1:5520163-5520182 | Msa0003060:CDS | 55.0% | |
| GTGATCCCAACTTGGGAGCA+GGG | + | chr1_1:5520708-5520727 | Msa0003060:CDS | 55.0% | |
| TCTAAGAAGGACCCGGCTAC+TGG | + | chr1_1:5520920-5520939 | Msa0003060:CDS | 55.0% | |
| AAAGGGAGGCTCAGTGCATG+AGG | + | chr1_1:5521914-5521933 | Msa0003060:intron | 55.0% | |
| AAAGTAGACGCCATGTGGCG+AGG | - | chr1_1:5522030-5522049 | None:intergenic | 55.0% | |
| ! | AAGGGTGAGCTTTGGCGCAA+TGG | - | chr1_1:5522054-5522073 | None:intergenic | 55.0% |
| ! | ATCACCGTTCGTGGCGGAGA+CGG | + | chr1_1:5517411-5517430 | Msa0003060:CDS | 60.0% |
| CTTGTTGCGAGGGGTGGACA+AGG | + | chr1_1:5519243-5519262 | Msa0003060:CDS | 60.0% | |
| TTGCGAGGGGTGGACAAGGA+GGG | + | chr1_1:5519247-5519266 | Msa0003060:CDS | 60.0% | |
| GGTTCATGGTCAACCTGGGG+AGG | + | chr1_1:5520120-5520139 | Msa0003060:CDS | 60.0% | |
| GGTGATCCCAACTTGGGAGC+AGG | + | chr1_1:5520707-5520726 | Msa0003060:CDS | 60.0% | |
| ACCACCGTCTCCGCCACGAA+CGG | - | chr1_1:5517418-5517437 | None:intergenic | 65.0% | |
| GTTGCGAGGGGTGGACAAGG+AGG | + | chr1_1:5519246-5519265 | Msa0003060:CDS | 65.0% | |
| TGCGAGGGGTGGACAAGGAG+GGG | + | chr1_1:5519248-5519267 | Msa0003060:CDS | 65.0% | |
| GGAGGCTCAGTGCATGAGGC+AGG | + | chr1_1:5521918-5521937 | Msa0003060:intron | 65.0% | |
| CCATGTGGCGAGGTGGCCTT+GGG | - | chr1_1:5522020-5522039 | None:intergenic | 65.0% | |
| GTAGACGCCATGTGGCGAGG+TGG | - | chr1_1:5522027-5522046 | None:intergenic | 65.0% | |
| ! | ACCGTTCGTGGCGGAGACGG+TGG | + | chr1_1:5517414-5517433 | Msa0003060:CDS | 70.0% |
| ! | CGTGGCGGAGACGGTGGTCA+CGG | + | chr1_1:5517420-5517439 | Msa0003060:CDS | 70.0% |
| CCCAAGGCCACCTCGCCACA+TGG | + | chr1_1:5522017-5522036 | Msa0003060:intron | 70.0% | |
| GCCATGTGGCGAGGTGGCCT+TGG | - | chr1_1:5522021-5522040 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 5517186 | 5523059 | 5517186 | ID=Msa0003060;Name=Msa0003060 |
| chr1_1 | mRNA | 5517186 | 5523059 | 5517186 | ID=Msa0003060-mRNA-1;Parent=Msa0003060;Name=Msa0003060-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.88|0.9|1|0.88|0.8|10|453|474 |
| chr1_1 | exon | 5517186 | 5517690 | 5517186 | ID=Msa0003060-mRNA-1:exon:1641;Parent=Msa0003060-mRNA-1 |
| chr1_1 | exon | 5519178 | 5519269 | 5519178 | ID=Msa0003060-mRNA-1:exon:1642;Parent=Msa0003060-mRNA-1 |
| chr1_1 | exon | 5519607 | 5519690 | 5519607 | ID=Msa0003060-mRNA-1:exon:1643;Parent=Msa0003060-mRNA-1 |
| chr1_1 | exon | 5520115 | 5520192 | 5520115 | ID=Msa0003060-mRNA-1:exon:1644;Parent=Msa0003060-mRNA-1 |
| chr1_1 | exon | 5520596 | 5520796 | 5520596 | ID=Msa0003060-mRNA-1:exon:1645;Parent=Msa0003060-mRNA-1 |
| chr1_1 | exon | 5520894 | 5521001 | 5520894 | ID=Msa0003060-mRNA-1:exon:1646;Parent=Msa0003060-mRNA-1 |
| chr1_1 | exon | 5521771 | 5521845 | 5521771 | ID=Msa0003060-mRNA-1:exon:1647;Parent=Msa0003060-mRNA-1 |
| chr1_1 | exon | 5522144 | 5522325 | 5522144 | ID=Msa0003060-mRNA-1:exon:1648;Parent=Msa0003060-mRNA-1 |
| chr1_1 | exon | 5522486 | 5522698 | 5522486 | ID=Msa0003060-mRNA-1:exon:1649;Parent=Msa0003060-mRNA-1 |
| chr1_1 | exon | 5522720 | 5523059 | 5522720 | ID=Msa0003060-mRNA-1:exon:1650;Parent=Msa0003060-mRNA-1 |
| chr1_1 | CDS | 5517186 | 5517690 | 5517186 | ID=Msa0003060-mRNA-1:cds;Parent=Msa0003060-mRNA-1 |
| chr1_1 | CDS | 5519178 | 5519269 | 5519178 | ID=Msa0003060-mRNA-1:cds;Parent=Msa0003060-mRNA-1 |
| chr1_1 | CDS | 5519607 | 5519690 | 5519607 | ID=Msa0003060-mRNA-1:cds;Parent=Msa0003060-mRNA-1 |
| chr1_1 | CDS | 5520115 | 5520192 | 5520115 | ID=Msa0003060-mRNA-1:cds;Parent=Msa0003060-mRNA-1 |
| chr1_1 | CDS | 5520596 | 5520796 | 5520596 | ID=Msa0003060-mRNA-1:cds;Parent=Msa0003060-mRNA-1 |
| chr1_1 | CDS | 5520894 | 5521001 | 5520894 | ID=Msa0003060-mRNA-1:cds;Parent=Msa0003060-mRNA-1 |
| chr1_1 | CDS | 5521771 | 5521845 | 5521771 | ID=Msa0003060-mRNA-1:cds;Parent=Msa0003060-mRNA-1 |
| chr1_1 | CDS | 5522144 | 5522325 | 5522144 | ID=Msa0003060-mRNA-1:cds;Parent=Msa0003060-mRNA-1 |
| chr1_1 | CDS | 5522486 | 5522585 | 5522486 | ID=Msa0003060-mRNA-1:cds;Parent=Msa0003060-mRNA-1 |
| chr1_1 | three_prime_UTR | 5522586 | 5522698 | 5522586 | ID=Msa0003060-mRNA-1:three_prime_utr;Parent=Msa0003060-mRNA-1 |
| chr1_1 | three_prime_UTR | 5522720 | 5523059 | 5522720 | ID=Msa0003060-mRNA-1:three_prime_utr;Parent=Msa0003060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
