Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0024110 | sp|F4IYF8|SYHC_ARATH | 56.453 | 891 | 351 | 12 | 2 | 866 | 4 | 883 | 0.0 | 905 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024110 | Msa0033880 | 0.802544 | 5.335818e-49 | -8.615850e-47 |
| Msa0024110 | Msa0043860 | 0.801982 | 6.963478e-49 | -8.615850e-47 |
| Msa0024110 | Msa0103240 | 0.800982 | 1.116246e-48 | -8.615850e-47 |
| Msa0024110 | Msa0119900 | 0.844713 | 6.375159e-59 | -8.615850e-47 |
| Msa0024110 | Msa0126770 | 0.812108 | 5.004362e-51 | -8.615850e-47 |
| Msa0024110 | Msa0127850 | 0.801557 | 8.510427e-49 | -8.615850e-47 |
| Msa0024110 | Msa0171850 | 0.821528 | 3.849837e-53 | -8.615850e-47 |
| Msa0024110 | Msa0174000 | 0.802438 | 5.610569e-49 | -8.615850e-47 |
| Msa0024110 | Msa0221600 | 0.809539 | 1.799807e-50 | -8.615850e-47 |
| Msa0024110 | Msa0245580 | 0.812886 | 3.382403e-51 | -8.615850e-47 |
| Msa0024110 | Msa0375710 | 0.806622 | 7.523293e-50 | -8.615850e-47 |
| Msa0024110 | Msa0478580 | 0.811387 | 7.183274e-51 | -8.615850e-47 |
| Msa0024110 | Msa0503530 | 0.830967 | 2.178834e-55 | -8.615850e-47 |
| Msa0024110 | Msa0509120 | 0.800569 | 1.355427e-48 | -8.615850e-47 |
| Msa0024110 | Msa0511770 | 0.812666 | 3.780347e-51 | -8.615850e-47 |
| Msa0024110 | Msa0593700 | 0.809526 | 1.811542e-50 | -8.615850e-47 |
| Msa0024110 | Msa0595170 | 0.805778 | 1.132659e-49 | -8.615850e-47 |
| Msa0024110 | Msa0618930 | 0.829272 | 5.647443e-55 | -8.615850e-47 |
| Msa0024110 | Msa0618950 | 0.800474 | 1.416863e-48 | -8.615850e-47 |
| Msa0024110 | Msa0619860 | 0.858678 | 6.986019e-63 | -8.615850e-47 |
| Msa0024110 | Msa0631250 | 0.820320 | 7.301188e-53 | -8.615850e-47 |
| Msa0024110 | Msa0633570 | 0.807366 | 5.235200e-50 | -8.615850e-47 |
| Msa0024110 | Msa0659790 | 0.802471 | 5.523995e-49 | -8.615850e-47 |
| Msa0024110 | Msa0693210 | 0.802685 | 4.990062e-49 | -8.615850e-47 |
| Msa0024110 | Msa0704660 | 0.803304 | 3.715486e-49 | -8.615850e-47 |
| Msa0024110 | Msa0744100 | 0.803233 | 3.844844e-49 | -8.615850e-47 |
| Msa0024110 | Msa0786750 | 0.802273 | 6.067186e-49 | -8.615850e-47 |
| Msa0024110 | Msa0794970 | 0.801506 | 8.720401e-49 | -8.615850e-47 |
| Msa0024110 | Msa0822170 | 0.805020 | 1.633157e-49 | -8.615850e-47 |
| Msa0024110 | Msa0822180 | 0.823414 | 1.402950e-53 | -8.615850e-47 |
| Msa0024110 | Msa0825270 | 0.810560 | 1.084739e-50 | -8.615850e-47 |
| Msa0024110 | Msa0831100 | 0.810100 | 1.363051e-50 | -8.615850e-47 |
| Msa0024110 | Msa0833190 | -0.805395 | 1.362846e-49 | -8.615850e-47 |
| Msa0024110 | Msa0858440 | 0.814549 | 1.456053e-51 | -8.615850e-47 |
| Msa0024110 | Msa0913240 | 0.802758 | 4.819806e-49 | -8.615850e-47 |
| Msa0024110 | Msa0963020 | 0.809200 | 2.128670e-50 | -8.615850e-47 |
| Msa0024110 | Msa1025940 | 0.805428 | 1.341342e-49 | -8.615850e-47 |
| Msa0024110 | Msa1070390 | 0.818067 | 2.378864e-52 | -8.615850e-47 |
| Msa0024110 | Msa1123830 | 0.839493 | 1.533681e-57 | -8.615850e-47 |
| Msa0024110 | Msa1165780 | 0.804774 | 1.838044e-49 | -8.615850e-47 |
| Msa0024110 | Msa1206650 | 0.802369 | 5.797989e-49 | -8.615850e-47 |
| Msa0024110 | Msa1208020 | 0.824445 | 8.039510e-54 | -8.615850e-47 |
| Msa0024110 | Msa1331250 | 0.833711 | 4.557371e-56 | -8.615850e-47 |
| Msa0024110 | Msa1369190 | 0.815527 | 8.830426e-52 | -8.615850e-47 |
| Msa0024110 | Msa1411950 | 0.809068 | 2.271746e-50 | -8.615850e-47 |
| Msa0024110 | Msa1437860 | 0.815653 | 8.278177e-52 | -8.615850e-47 |
| Msa0024110 | Msa1450310 | 0.816782 | 4.630965e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0024110 | MtrunA17_Chr1g0177811 | 97.696 | 868 | 20 | 0 | 1 | 868 | 1 | 868 | 0.0 | 1732 |
| Msa0024110 | MtrunA17_Chr5g0443461 | 69.203 | 276 | 13 | 2 | 445 | 720 | 1 | 204 | 6.75e-118 | 357 |
| Msa0024110 | MtrunA17_Chr7g0264611 | 27.972 | 429 | 282 | 11 | 434 | 853 | 113 | 523 | 8.15e-42 | 160 |
| Msa0024110 | MtrunA17_Chr1g0177821 | 47.143 | 140 | 6 | 2 | 582 | 721 | 25 | 96 | 4.54e-27 | 108 |
| Msa0024110 | MtrunA17_Chr4g0073411 | 83.333 | 54 | 9 | 0 | 516 | 569 | 1 | 54 | 1.67e-25 | 99.8 |
| Msa0024110 | MtrunA17_Chr4g0033521 | 26.696 | 457 | 274 | 21 | 439 | 862 | 788 | 1216 | 2.03e-23 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0024110 | AT3G02760.2 | 56.453 | 891 | 351 | 12 | 2 | 866 | 4 | 883 | 0.0 | 905 |
| Msa0024110 | AT3G02760.1 | 56.453 | 891 | 351 | 12 | 2 | 866 | 4 | 883 | 0.0 | 905 |
| Msa0024110 | AT3G46100.1 | 30.093 | 432 | 269 | 13 | 434 | 853 | 72 | 482 | 1.01e-44 | 169 |
| Msa0024110 | AT3G59410.5 | 25.814 | 430 | 261 | 16 | 447 | 840 | 796 | 1203 | 1.81e-28 | 124 |
| Msa0024110 | AT3G59410.1 | 25.814 | 430 | 261 | 16 | 447 | 840 | 796 | 1203 | 1.82e-28 | 124 |
| Msa0024110 | AT3G59410.3 | 25.814 | 430 | 261 | 16 | 447 | 840 | 796 | 1203 | 1.82e-28 | 124 |
| Msa0024110 | AT3G59410.4 | 25.814 | 430 | 261 | 16 | 447 | 840 | 797 | 1204 | 1.86e-28 | 124 |
| Msa0024110 | AT3G59410.2 | 25.814 | 430 | 261 | 16 | 447 | 840 | 820 | 1227 | 1.91e-28 | 124 |
| Msa0024110 | AT5G03406.1 | 32.620 | 187 | 119 | 4 | 434 | 614 | 72 | 257 | 1.41e-20 | 92.8 |
Find 210 sgRNAs with CRISPR-Local
Find 743 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGTCCTAGTGAGCATATT+AGG | 0.192256 | 1_1:-46245394 | Msa0024110:CDS |
| GGGACATAAGTTGGGGAAAT+TGG | 0.195576 | 1_1:-46254093 | Msa0024110:CDS |
| GAAGAAGAAGAAAGCTGTTT+TGG | 0.204635 | 1_1:-46253688 | Msa0024110:CDS |
| CATCAATCAGCGGGTTTGTT+AGG | 0.213228 | 1_1:-46254374 | Msa0024110:CDS |
| ATTGGAAATGTTCGGGAAAA+TGG | 0.223672 | 1_1:-46253732 | Msa0024110:CDS |
| TCACGGTATCTTCCTTTAGA+TGG | 0.228361 | 1_1:+46252118 | None:intergenic |
| GGCAATGGCCTTGAGGGAAT+TGG | 0.229340 | 1_1:-46254027 | Msa0024110:CDS |
| GCTACAAACACCGGGACTTA+TGG | 0.237268 | 1_1:+46245115 | None:intergenic |
| AGTTTCGATAACAATGTTAA+AGG | 0.237554 | 1_1:+46250230 | None:intergenic |
| TGTAGAGAATTTGCGGAAAT+TGG | 0.248725 | 1_1:-46253601 | Msa0024110:CDS |
| GCTTGGGGTTTCCGCGGTTT+TGG | 0.260225 | 1_1:-46254399 | Msa0024110:CDS |
| TTCATCTAGGGTTAGGAATT+CGG | 0.265210 | 1_1:+46254601 | None:intergenic |
| GTGAAAATTGTTAAAGTTCA+TGG | 0.268964 | 1_1:-46254173 | Msa0024110:CDS |
| TGAATTGCGAGAAACTCTTA+TGG | 0.273622 | 1_1:-46252684 | Msa0024110:CDS |
| CTTCTGTTGTTGCTCCATTA+TGG | 0.279186 | 1_1:+46245880 | None:intergenic |
| GAGAGAGAGAAACAGGGTTT+AGG | 0.297576 | 1_1:+46254786 | None:intergenic |
| GTTGAATCATAGAAAGTTAC+TGG | 0.300163 | 1_1:-46251252 | Msa0024110:CDS |
| TCGGGTCTCGGTGAAATCTT+TGG | 0.300184 | 1_1:-46253942 | Msa0024110:CDS |
| TAAAATCACCTTAGGGATCT+TGG | 0.302295 | 1_1:+46253467 | None:intergenic |
| AGAGGTCTTGATTATTATAC+TGG | 0.307339 | 1_1:-46250077 | Msa0024110:CDS |
| AATTGACAACAAATTACTTT+TGG | 0.309741 | 1_1:+46253983 | None:intergenic |
| TCATCTAGGGTTAGGAATTC+GGG | 0.309870 | 1_1:+46254602 | None:intergenic |
| GAAACTCTTATGGGAAAATA+TGG | 0.310245 | 1_1:-46252674 | Msa0024110:CDS |
| TGTTTCTCTCTCTCGCAAAA+TGG | 0.314207 | 1_1:-46254777 | Msa0024110:exon |
| GAATCTTTCAAGTTGTATTC+TGG | 0.316137 | 1_1:-46253876 | Msa0024110:CDS |
| ACGAGTGTGCGGCGTTGCTT+GGG | 0.320606 | 1_1:-46254415 | Msa0024110:CDS |
| AGAGAGAGAAACAGGGTTTA+GGG | 0.326821 | 1_1:+46254787 | None:intergenic |
| AACGAGTGTGCGGCGTTGCT+TGG | 0.330273 | 1_1:-46254416 | Msa0024110:CDS |
| CTACAAACACCGGGACTTAT+GGG | 0.333119 | 1_1:+46245116 | None:intergenic |
| CTTAATGGATCTAAGTTTGT+TGG | 0.336591 | 1_1:-46254218 | Msa0024110:CDS |
| CAATGTGACTTTGATATTGC+TGG | 0.341855 | 1_1:-46252088 | Msa0024110:CDS |
| TCCAGCAGTTGGTGTAAGTC+TGG | 0.342849 | 1_1:-46245921 | Msa0024110:CDS |
| CTCTTCATCGAATCGAAAAC+TGG | 0.342939 | 1_1:+46254478 | None:intergenic |
| TTCGATCTTGGCGTTGCTTA+AGG | 0.343576 | 1_1:-46253652 | Msa0024110:CDS |
| TCCTTTGGCAATGGCCTTGA+GGG | 0.348668 | 1_1:-46254033 | Msa0024110:CDS |
| TGGAGTTAAAGCAGAATTCT+TGG | 0.351175 | 1_1:-46245323 | Msa0024110:CDS |
| TTCGGTAGACTTTAGCTATC+TGG | 0.352140 | 1_1:+46252149 | None:intergenic |
| CATCCTACTTGGCATGTGTT+TGG | 0.353353 | 1_1:-46245093 | Msa0024110:three_prime_UTR |
| ATTCTAACAACCTCAAAATC+TGG | 0.356532 | 1_1:+46252046 | None:intergenic |
| ATGAAAAGATTGGAAATGTT+CGG | 0.358192 | 1_1:-46253740 | Msa0024110:CDS |
| TTTGCGGAAATTGGAGAGTT+GGG | 0.359469 | 1_1:-46253592 | Msa0024110:CDS |
| AAAGAGGAAGTTGGTGTTGC+TGG | 0.361337 | 1_1:-46254257 | Msa0024110:CDS |
| GATTTATGATCTTGCTGATC+AGG | 0.370898 | 1_1:-46252636 | Msa0024110:intron |
| CATGAAATCAATGTGTTGTT+TGG | 0.376117 | 1_1:-46253831 | Msa0024110:CDS |
| TTTGCATAGTCAAAGTGCTT+TGG | 0.379340 | 1_1:+46245286 | None:intergenic |
| GATGCGGGTTGAGTTGAATT+CGG | 0.381314 | 1_1:-46254114 | Msa0024110:CDS |
| TGAAAAGATTGGAAATGTTC+GGG | 0.384406 | 1_1:-46253739 | Msa0024110:CDS |
| CGAGAGAGTATTTGCCATAA+TGG | 0.385031 | 1_1:-46245894 | Msa0024110:CDS |
| GAGCTCTGAATAAAATTTCC+AGG | 0.385066 | 1_1:+46250150 | None:intergenic |
| GTGTCCAACTGATGCTAGTT+TGG | 0.386260 | 1_1:-46253913 | Msa0024110:CDS |
| GTGGAGAGCTCTGTTCTTTG+AGG | 0.387870 | 1_1:-46252237 | Msa0024110:CDS |
| TGGTAGCGATGATTTGAAAT+CGG | 0.389582 | 1_1:-46253961 | Msa0024110:CDS |
| GCTGAGACAGCTGACAGAAT+TGG | 0.393002 | 1_1:-46250278 | Msa0024110:CDS |
| GAATTGCGAGAAACTCTTAT+GGG | 0.394526 | 1_1:-46252683 | Msa0024110:CDS |
| GCAATGGCCTTGAGGGAATT+GGG | 0.395405 | 1_1:-46254026 | Msa0024110:CDS |
| GTTTGTCGTACTCTAGTTGA+AGG | 0.399143 | 1_1:-46244995 | Msa0024110:three_prime_UTR |
| GGTCGATACGATAACCTGAT+AGG | 0.399560 | 1_1:-46245965 | Msa0024110:CDS |
| ATGAAATCAATGTGTTGTTT+GGG | 0.400022 | 1_1:-46253830 | Msa0024110:CDS |
| CTTTAGATGGGTTGTCCCTT+CGG | 0.401007 | 1_1:+46252131 | None:intergenic |
| TGAAAATTGTTAAAGTTCAT+GGG | 0.401175 | 1_1:-46254172 | Msa0024110:CDS |
| AAAAGTAATTTGTTGTCAAT+TGG | 0.401444 | 1_1:-46253981 | Msa0024110:CDS |
| GCTAGATTTGTAGCTATGAA+TGG | 0.403216 | 1_1:-46252193 | Msa0024110:CDS |
| TGCTTGATGAGCTGAACATT+GGG | 0.405566 | 1_1:-46252012 | Msa0024110:CDS |
| TTAAAGTTCATGGGGTTATG+AGG | 0.405693 | 1_1:-46254163 | Msa0024110:CDS |
| ATGCGGGTTGAGTTGAATTC+GGG | 0.408913 | 1_1:-46254113 | Msa0024110:CDS |
| TTGAATTCGGGACATAAGTT+GGG | 0.409138 | 1_1:-46254101 | Msa0024110:CDS |
| GTGTGATGTGTTGTTTCCTT+TGG | 0.414975 | 1_1:-46254048 | Msa0024110:CDS |
| TCGAACCAAACATCCCTATC+AGG | 0.415605 | 1_1:+46245951 | None:intergenic |
| GCTGATTTGAATGAAAAGAT+TGG | 0.418490 | 1_1:-46253750 | Msa0024110:CDS |
| GGAAGGCGCGAGTTTCATCT+AGG | 0.419763 | 1_1:+46254588 | None:intergenic |
| GCTGGTGAACTGTGGGATGC+TGG | 0.422884 | 1_1:-46245343 | Msa0024110:CDS |
| AAAATCACCTTAGGGATCTT+GGG | 0.423985 | 1_1:+46253468 | None:intergenic |
| AGGATGGTGGTGAGGTTAAT+CGG | 0.427546 | 1_1:+46254645 | None:intergenic |
| CATATAGTTCTAAACTTCTC+AGG | 0.429885 | 1_1:+46251200 | None:intergenic |
| AGTTGGGGAAATTGGATCTT+GGG | 0.430935 | 1_1:-46254085 | Msa0024110:CDS |
| CGCGAGTTTCATCTAGGGTT+AGG | 0.432765 | 1_1:+46254594 | None:intergenic |
| AAGTCCTAGTGAGCATATTA+GGG | 0.434249 | 1_1:-46245393 | Msa0024110:CDS |
| CGGGTCTCGGTGAAATCTTT+GGG | 0.436415 | 1_1:-46253941 | Msa0024110:CDS |
| AACAAACTCAATATCTTCAT+AGG | 0.439314 | 1_1:+46244909 | None:intergenic |
| TGAACAGATAAGAAAAGAAA+TGG | 0.440667 | 1_1:-46251144 | Msa0024110:intron |
| GAAATTATCTCACGTAACTT+AGG | 0.442396 | 1_1:+46245039 | None:intergenic |
| ATCAATCAGCGGGTTTGTTA+GGG | 0.445914 | 1_1:-46254373 | Msa0024110:CDS |
| GATAACCTGATAGGGATGTT+TGG | 0.446654 | 1_1:-46245956 | Msa0024110:CDS |
| CACGGTATCTTCCTTTAGAT+GGG | 0.451775 | 1_1:+46252119 | None:intergenic |
| ATTTGCGGAAATTGGAGAGT+TGG | 0.452819 | 1_1:-46253593 | Msa0024110:CDS |
| ATAGCTACAAATCTAGCAAA+TGG | 0.455387 | 1_1:+46252199 | None:intergenic |
| AGGGTTCAGTTCAGAAATGC+AGG | 0.455430 | 1_1:+46254806 | None:intergenic |
| TGGATCTAAGTTTGTTGGAA+AGG | 0.456790 | 1_1:-46254213 | Msa0024110:CDS |
| CGCCGTAACACTCGGCGGCA+AGG | 0.459752 | 1_1:-46254747 | Msa0024110:CDS |
| TAAATCAAAACGCCTTGATA+AGG | 0.460427 | 1_1:-46250123 | Msa0024110:CDS |
| ACCCTTGCCGCCGAGTGTTA+CGG | 0.463734 | 1_1:+46254745 | None:intergenic |
| GGGAATGATGTAACACTAGC+TGG | 0.463967 | 1_1:-46245373 | Msa0024110:CDS |
| GCTCACTAGGACTTCTGTCT+TGG | 0.464076 | 1_1:+46245402 | None:intergenic |
| AAGTTGGGGAAATTGGATCT+TGG | 0.464449 | 1_1:-46254086 | Msa0024110:CDS |
| AAGCGAAATCGGTGCATTCG+AGG | 0.464943 | 1_1:-46254136 | Msa0024110:CDS |
| GGTAGCGATGATTTGAAATC+GGG | 0.469298 | 1_1:-46253960 | Msa0024110:CDS |
| GTTGAATTCGGGACATAAGT+TGG | 0.469912 | 1_1:-46254102 | Msa0024110:CDS |
| GGTGTTTGTAGCATCCTACT+TGG | 0.470236 | 1_1:-46245104 | Msa0024110:three_prime_UTR |
| CCCAGACTTACACCAACTGC+TGG | 0.472667 | 1_1:+46245920 | None:intergenic |
| TTTGTTAGGGTTTGCTGATG+TGG | 0.473132 | 1_1:-46254360 | Msa0024110:CDS |
| GAGAGGAACTAGTTCGATCT+TGG | 0.477327 | 1_1:-46253664 | Msa0024110:CDS |
| GTATAAAACCAAAAGCGTAT+TGG | 0.479240 | 1_1:+46244759 | None:intergenic |
| GTTTCTCGCAATTCAAAGAC+AGG | 0.479367 | 1_1:+46252692 | None:intergenic |
| CTTTCAAGTTGTATTCTGGT+AGG | 0.483536 | 1_1:-46253872 | Msa0024110:CDS |
| GGAGTAGACTAATTGAACTT+TGG | 0.486506 | 1_1:-46244861 | Msa0024110:three_prime_UTR |
| AGTCACATTGATAAAATTCA+CGG | 0.491051 | 1_1:+46252101 | None:intergenic |
| TATGAGGGAGAAAGCGAAAT+CGG | 0.493860 | 1_1:-46254147 | Msa0024110:CDS |
| TGTGTTGTTTCCTTTGGCAA+TGG | 0.494023 | 1_1:-46254042 | Msa0024110:CDS |
| GATAGTGATATTCTGCTTTG+AGG | 0.496041 | 1_1:+46254625 | None:intergenic |
| GAGGCATGGTGCCACAGCCT+TGG | 0.499195 | 1_1:-46252720 | Msa0024110:CDS |
| GCTGTCTACGCCACCGCCAC+AGG | 0.500946 | 1_1:-46254704 | Msa0024110:CDS |
| AACTTGATGGATTCTGGTGA+TGG | 0.503975 | 1_1:-46254290 | Msa0024110:CDS |
| GCCGTAACACTCGGCGGCAA+GGG | 0.505341 | 1_1:-46254746 | Msa0024110:CDS |
| CATTCCCTAATATGCTCACT+AGG | 0.506109 | 1_1:+46245389 | None:intergenic |
| CGAAGGGACAACCCATCTAA+AGG | 0.507198 | 1_1:-46252130 | Msa0024110:CDS |
| TAAAGTTCATGGGGTTATGA+GGG | 0.508126 | 1_1:-46254162 | Msa0024110:CDS |
| TTTCAAGTTGTATTCTGGTA+GGG | 0.512666 | 1_1:-46253871 | Msa0024110:CDS |
| CAAAAGAATCAAGAATCCCT+TGG | 0.512906 | 1_1:-46245267 | Msa0024110:CDS |
| GATGATACTTGTTGGTGAGC+AGG | 0.515279 | 1_1:-46245245 | Msa0024110:CDS |
| TTCCTTTGGCAATGGCCTTG+AGG | 0.519804 | 1_1:-46254034 | Msa0024110:CDS |
| AGAGTGATGTAGAGAATTTG+CGG | 0.520456 | 1_1:-46253608 | Msa0024110:CDS |
| CAACTGAAAAGCCTCGAGTC+AGG | 0.521052 | 1_1:-46245202 | Msa0024110:CDS |
| CTAAAATAACTGTTCCGTTG+TGG | 0.525861 | 1_1:-46244831 | Msa0024110:three_prime_UTR |
| TTGGTGTTGCTGGTGATATG+AGG | 0.526184 | 1_1:-46254247 | Msa0024110:CDS |
| AATCGGTGCATTCGAGGATG+CGG | 0.527933 | 1_1:-46254130 | Msa0024110:CDS |
| AGTATAATAATCAAGACCTC+TGG | 0.528138 | 1_1:+46250079 | None:intergenic |
| CGAGTGTGCGGCGTTGCTTG+GGG | 0.528173 | 1_1:-46254414 | Msa0024110:CDS |
| ACTAGGACTTCTGTCTTGGT+TGG | 0.529009 | 1_1:+46245406 | None:intergenic |
| CAGGTTGGTTCAATTGCTGC+TGG | 0.530641 | 1_1:-46245989 | Msa0024110:CDS |
| AGTGCTTTCTTAGAAAATGC+TGG | 0.533444 | 1_1:-46250194 | Msa0024110:CDS |
| TTGCTTGATGAGCTGAACAT+TGG | 0.534227 | 1_1:-46252013 | Msa0024110:CDS |
| ATGGCCTGACATCTTTGAAA+AGG | 0.534756 | 1_1:-46252174 | Msa0024110:CDS |
| TACTCTAGTTGAAGGAGTAT+AGG | 0.534874 | 1_1:-46244987 | Msa0024110:three_prime_UTR |
| ATCGGTGCATTCGAGGATGC+GGG | 0.536101 | 1_1:-46254129 | Msa0024110:CDS |
| ATTTATCAAATTTAGTTGAG+AGG | 0.542507 | 1_1:-46244936 | Msa0024110:three_prime_UTR |
| TTGTTGAGGAACTTCGGAAA+CGG | 0.545775 | 1_1:-46245144 | Msa0024110:CDS |
| AGTCAAATACAACCTTATCA+AGG | 0.546616 | 1_1:+46250111 | None:intergenic |
| ATGTGTTGTTTGGGCTTGTG+TGG | 0.549870 | 1_1:-46253821 | Msa0024110:CDS |
| ATCCCTTGGATGATACTTGT+TGG | 0.551773 | 1_1:-46245253 | Msa0024110:CDS |
| TAAAACCAAAAGCGTATTGG+AGG | 0.552907 | 1_1:+46244762 | None:intergenic |
| TCGAAGCAAGTTCCAGCAGT+TGG | 0.553760 | 1_1:-46245932 | Msa0024110:CDS |
| GATGATTTGAAATCGGGTCT+CGG | 0.554379 | 1_1:-46253954 | Msa0024110:CDS |
| CATACTTCTAAAGAGGAAGT+TGG | 0.554678 | 1_1:-46254266 | Msa0024110:CDS |
| CCAGCAGTTGGTGTAAGTCT+GGG | 0.556025 | 1_1:-46245920 | Msa0024110:CDS |
| ACACTAGCTGGAGAGCTAGC+TGG | 0.561864 | 1_1:-46245361 | Msa0024110:CDS |
| TCTTGGCGTTGCTTAAGGAA+AGG | 0.562932 | 1_1:-46253647 | Msa0024110:CDS |
| TTATCGAAACTTAAACAAGA+AGG | 0.563144 | 1_1:-46250218 | Msa0024110:CDS |
| GTCGATACGATAACCTGATA+GGG | 0.570054 | 1_1:-46245964 | Msa0024110:CDS |
| TCCCTCAAGGCCATTGCCAA+AGG | 0.573913 | 1_1:+46254032 | None:intergenic |
| CTGCTTTGAGGATGGTGGTG+AGG | 0.574468 | 1_1:+46254637 | None:intergenic |
| GACAGGTGTATCCAAGGCTG+TGG | 0.579031 | 1_1:+46252709 | None:intergenic |
| GAAAATTGTTAAAGTTCATG+GGG | 0.580411 | 1_1:-46254171 | Msa0024110:CDS |
| GTGATATTCTGCTTTGAGGA+TGG | 0.581331 | 1_1:+46254629 | None:intergenic |
| CATAATGGAGCAACAACAGA+AGG | 0.581880 | 1_1:-46245879 | Msa0024110:CDS |
| TTGTGTGGAAAATTGTGGCG+TGG | 0.583231 | 1_1:-46253806 | Msa0024110:CDS |
| ACGGTTAAACCCATAAGTCC+CGG | 0.584928 | 1_1:-46245125 | Msa0024110:exon |
| GTTGAGAAGAACGATGAGGA+AGG | 0.585073 | 1_1:+46254571 | None:intergenic |
| CTAACCAAACTAGCATCAGT+TGG | 0.585403 | 1_1:+46253909 | None:intergenic |
| TTCAAAGACAGGTGTATCCA+AGG | 0.588118 | 1_1:+46252703 | None:intergenic |
| GGCATTGAAGGCTAATGTGA+CGG | 0.590171 | 1_1:-46254318 | Msa0024110:CDS |
| ACTCCAAACACATGCCAAGT+AGG | 0.591877 | 1_1:+46245090 | None:intergenic |
| GGTGAGCAGGAAATAAAAGA+AGG | 0.593607 | 1_1:-46245232 | Msa0024110:CDS |
| GAACTCTCCGCCGTAACACT+CGG | 0.593765 | 1_1:-46254755 | Msa0024110:CDS |
| TGGGCTTGTGTGGAAAATTG+TGG | 0.594154 | 1_1:-46253811 | Msa0024110:CDS |
| TGATGGACATACTTCTAAAG+AGG | 0.594841 | 1_1:-46254273 | Msa0024110:CDS |
| AATCATAGAAAGTTACTGGA+TGG | 0.599873 | 1_1:-46251248 | Msa0024110:CDS |
| GAGAGCTAGCTGGTGAACTG+TGG | 0.602920 | 1_1:-46245351 | Msa0024110:CDS |
| ATGCTGTAGATGGAAGAGAA+AGG | 0.603084 | 1_1:-46250308 | Msa0024110:intron |
| GGCGTTGCTTGGGGTTTCCG+CGG | 0.603370 | 1_1:-46254405 | Msa0024110:CDS |
| TGAATTCGGGACATAAGTTG+GGG | 0.603870 | 1_1:-46254100 | Msa0024110:CDS |
| AAGTAGGATGCTACAAACAC+CGG | 0.606252 | 1_1:+46245106 | None:intergenic |
| AGGGTTTGCTGATGTGGCGG+CGG | 0.606817 | 1_1:-46254354 | Msa0024110:CDS |
| AGAGCTAGCTGGTGAACTGT+GGG | 0.614291 | 1_1:-46245350 | Msa0024110:CDS |
| GGCGGTGGCGTAGACAGCGG+AGG | 0.615895 | 1_1:+46254709 | None:intergenic |
| GGTTAATCGGTCGAGTGCGG+AGG | 0.616854 | 1_1:+46254658 | None:intergenic |
| GAAGGCGCGAGTTTCATCTA+GGG | 0.616860 | 1_1:+46254589 | None:intergenic |
| TCACCAACAAGTATCATCCA+AGG | 0.624639 | 1_1:+46245250 | None:intergenic |
| TGTGTGGAAAATTGTGGCGT+GGG | 0.624758 | 1_1:-46253805 | Msa0024110:CDS |
| TGTTGATGCATTGAATGACC+TGG | 0.626342 | 1_1:-46250168 | Msa0024110:CDS |
| TCTCGGTGAAATCTTTGGGA+AGG | 0.626530 | 1_1:-46253937 | Msa0024110:CDS |
| GGGTTCAGTTCAGAAATGCA+GGG | 0.627664 | 1_1:+46254807 | None:intergenic |
| AGATAGCTAAAGTCTACCGA+AGG | 0.629390 | 1_1:-46252147 | Msa0024110:CDS |
| TTACATCATTACCTGACTCG+AGG | 0.629762 | 1_1:+46245191 | None:intergenic |
| CATCTAGGGTTAGGAATTCG+GGG | 0.632926 | 1_1:+46254603 | None:intergenic |
| TGAGGTTAATCGGTCGAGTG+CGG | 0.634073 | 1_1:+46254655 | None:intergenic |
| AAGATTGCCCAAGATCCCTA+AGG | 0.635165 | 1_1:-46253475 | Msa0024110:intron |
| GTTGGTTCAATTGCTGCTGG+TGG | 0.636788 | 1_1:-46245986 | Msa0024110:CDS |
| CACCAACAAGTATCATCCAA+GGG | 0.637651 | 1_1:+46245251 | None:intergenic |
| GATGGCATGATGCAAATATG+TGG | 0.639864 | 1_1:-46251230 | Msa0024110:CDS |
| ACACTCACCCAATTCCCTCA+AGG | 0.640735 | 1_1:+46254019 | None:intergenic |
| TTTGACTTGAGTCTTGCCAG+AGG | 0.641980 | 1_1:-46250095 | Msa0024110:CDS |
| ATATTCTGCTTTGAGGATGG+TGG | 0.642392 | 1_1:+46254632 | None:intergenic |
| ACAACAGAAGGATCAGAACC+AGG | 0.647677 | 1_1:-46245867 | Msa0024110:intron |
| GTTAGGGTTTGCTGATGTGG+CGG | 0.654312 | 1_1:-46254357 | Msa0024110:CDS |
| GTTTGTTGAGAAGAACGATG+AGG | 0.658497 | 1_1:+46254567 | None:intergenic |
| TGTGGCGGTGGCGTAGACAG+CGG | 0.660194 | 1_1:+46254706 | None:intergenic |
| AGTAGGATGCTACAAACACC+GGG | 0.663476 | 1_1:+46245107 | None:intergenic |
| GACTGCTTATGCTGTACTCG+AGG | 0.664600 | 1_1:-46253775 | Msa0024110:CDS |
| GCAGGAAATAAAAGAAGGCA+CGG | 0.665098 | 1_1:-46245227 | Msa0024110:CDS |
| CTTGCCGCCGAGTGTTACGG+CGG | 0.669433 | 1_1:+46254748 | None:intergenic |
| TGGAAAGGAAAGTGTTCCTG+AGG | 0.675831 | 1_1:-46254198 | Msa0024110:CDS |
| GCTTGATGAGCTGAACATTG+GGG | 0.679569 | 1_1:-46252011 | Msa0024110:CDS |
| GTTGATGAACAACGAGTGTG+CGG | 0.691627 | 1_1:-46254426 | Msa0024110:CDS |
| ATAGTTCTAAACTTCTCAGG+AGG | 0.693927 | 1_1:+46251203 | None:intergenic |
| GATAGCTAAAGTCTACCGAA+GGG | 0.701457 | 1_1:-46252146 | Msa0024110:CDS |
| CGACAAACAATGAACAACGG+TGG | 0.709760 | 1_1:+46245010 | None:intergenic |
| GTACGACAAACAATGAACAA+CGG | 0.737754 | 1_1:+46245007 | None:intergenic |
| TTTACACAGATAAACCACAA+CGG | 0.743849 | 1_1:+46244817 | None:intergenic |
| CTCTCCGCCGTAACACTCGG+CGG | 0.746601 | 1_1:-46254752 | Msa0024110:CDS |
| TGATTGATGATCCAAAACCG+CGG | 0.764436 | 1_1:+46254388 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAATGAATGATATTATA+AGG | + | chr1_1:46248182-46248201 | None:intergenic | 10.0% |
| !! | CATAATAAAATTAATTACAA+AGG | + | chr1_1:46248494-46248513 | None:intergenic | 10.0% |
| !!! | TTAATTTTATTATGATTGAA+CGG | - | chr1_1:46248500-46248519 | Msa0024110:intron | 10.0% |
| !! | AAAGAGATTAATTAAATTAA+TGG | - | chr1_1:46249954-46249973 | Msa0024110:intron | 10.0% |
| !! | TATAGATTATTATTAAAGAT+TGG | - | chr1_1:46252516-46252535 | Msa0024110:intron | 10.0% |
| !! | AATAAAAATTCATTGAATTC+AGG | + | chr1_1:46246053-46246072 | None:intergenic | 15.0% |
| !!! | TGAATTTTTATTGAAAGTAA+AGG | - | chr1_1:46246061-46246080 | Msa0024110:intron | 15.0% |
| !!! | TGATTTTATTGATTCTTTTA+GGG | - | chr1_1:46246132-46246151 | Msa0024110:intron | 15.0% |
| !! | AACTTAACTATTTCATAAAT+TGG | + | chr1_1:46246353-46246372 | None:intergenic | 15.0% |
| !! | ATTGTTAAAATCATATTTCA+AGG | - | chr1_1:46246571-46246590 | Msa0024110:intron | 15.0% |
| !! | TAAATTATAACAAATAAGCT+GGG | + | chr1_1:46248048-46248067 | None:intergenic | 15.0% |
| !! | TTAAATTATAACAAATAAGC+TGG | + | chr1_1:46248049-46248068 | None:intergenic | 15.0% |
| !! | AAATCTAAACTGTTAATATT+AGG | - | chr1_1:46249192-46249211 | Msa0024110:intron | 15.0% |
| !! | ATATGACTTAAGATTTAAAT+TGG | + | chr1_1:46249985-46250004 | None:intergenic | 15.0% |
| !! | TAAAAACTAAATCCTAATTT+AGG | + | chr1_1:46250190-46250209 | None:intergenic | 15.0% |
| !!! | AATTAGGATTTAGTTTTTAA+TGG | - | chr1_1:46250191-46250210 | Msa0024110:CDS | 15.0% |
| !!! | AATTTCTACTAGATTTATTT+TGG | + | chr1_1:46250529-46250548 | None:intergenic | 15.0% |
| !!! | TTTAAGATTACTTAGAATTT+CGG | + | chr1_1:46252765-46252784 | None:intergenic | 15.0% |
| !! | ATTCTAAGTAATCTTAAAAA+AGG | - | chr1_1:46252767-46252786 | Msa0024110:CDS | 15.0% |
| !! | TCAAAGAATTAGTAAAAATT+AGG | + | chr1_1:46252842-46252861 | None:intergenic | 15.0% |
| !!! | TTTTTATTAATAGTTATCCT+AGG | + | chr1_1:46253230-46253249 | None:intergenic | 15.0% |
| !!! | AAAATAACTTGTGTTAAAAT+GGG | + | chr1_1:46253826-46253845 | None:intergenic | 15.0% |
| !! | AAAGAAGAAAAAAAGAAAAT+AGG | + | chr1_1:46254008-46254027 | None:intergenic | 15.0% |
| !! | TGAAAATTGTTAAAGTTCAT+GGG | - | chr1_1:46245412-46245431 | Msa0024110:CDS | 20.0% |
| !!! | AATTGACAACAAATTACTTT+TGG | + | chr1_1:46245604-46245623 | None:intergenic | 20.0% |
| !!! | AAAAGTAATTTGTTGTCAAT+TGG | - | chr1_1:46245603-46245622 | Msa0024110:intron | 20.0% |
| !!! | GTGATTTTATTGATTCTTTT+AGG | - | chr1_1:46246131-46246150 | Msa0024110:intron | 20.0% |
| !! | TTAAAAAACCATTCATTAGA+AGG | - | chr1_1:46246292-46246311 | Msa0024110:intron | 20.0% |
| !! | TAAAAAACCATTCATTAGAA+GGG | - | chr1_1:46246293-46246312 | Msa0024110:intron | 20.0% |
| !! | AAGCTTGTATCATATTATTA+TGG | - | chr1_1:46246384-46246403 | Msa0024110:intron | 20.0% |
| !! | ATTATTACTTATTCACTTCT+TGG | - | chr1_1:46246972-46246991 | Msa0024110:intron | 20.0% |
| !!! | TGAGTTGATTTTAAGAATAT+TGG | - | chr1_1:46247000-46247019 | Msa0024110:intron | 20.0% |
| !! | ATCAACTTTATCTATAGATT+TGG | + | chr1_1:46247284-46247303 | None:intergenic | 20.0% |
| !! | ATTTATATTAGTATATGTGC+TGG | - | chr1_1:46247771-46247790 | Msa0024110:intron | 20.0% |
| !! | TTTATATTAGTATATGTGCT+GGG | - | chr1_1:46247772-46247791 | Msa0024110:intron | 20.0% |
| !! | TAAATTATAGCAGATAAGTT+TGG | + | chr1_1:46248158-46248177 | None:intergenic | 20.0% |
| !!! | GTAATTTTTTTTTGTTTCAC+AGG | - | chr1_1:46248305-46248324 | Msa0024110:intron | 20.0% |
| !!! | TTTTACATTTTGAAAGATGT+AGG | - | chr1_1:46248556-46248575 | Msa0024110:intron | 20.0% |
| !! | TTTATCAATGGTAAATAGTT+TGG | - | chr1_1:46248622-46248641 | Msa0024110:intron | 20.0% |
| !!! | ATATTTGAAGCTGTTTTTAA+AGG | - | chr1_1:46249534-46249553 | Msa0024110:intron | 20.0% |
| !!! | TATTTGAAGCTGTTTTTAAA+GGG | - | chr1_1:46249535-46249554 | Msa0024110:intron | 20.0% |
| !!! | ACATGTTTTTTTTTTTCTTC+TGG | - | chr1_1:46249736-46249755 | Msa0024110:intron | 20.0% |
| !!! | ACATAAGCTTTAGATTTTTT+AGG | - | chr1_1:46250011-46250030 | Msa0024110:intron | 20.0% |
| !! | ATGAAGTTAAACATTGTTAA+TGG | - | chr1_1:46250078-46250097 | Msa0024110:CDS | 20.0% |
| !!! | ATTTTCAATGATTGAATATG+AGG | + | chr1_1:46250433-46250452 | None:intergenic | 20.0% |
| !! | ATTAAATTCCATCTAATAGA+CGG | - | chr1_1:46250546-46250565 | Msa0024110:intron | 20.0% |
| !! | AGATTATGATTATTAAAGAC+TGG | + | chr1_1:46250606-46250625 | None:intergenic | 20.0% |
| !!! | TTTTCAATTTTGCTTCATTT+GGG | + | chr1_1:46251446-46251465 | None:intergenic | 20.0% |
| !!! | TTTTTCAATTTTGCTTCATT+TGG | + | chr1_1:46251447-46251466 | None:intergenic | 20.0% |
| !! | AATGAAGCAAAATTGAAAAA+TGG | - | chr1_1:46251447-46251466 | Msa0024110:intron | 20.0% |
| !! | ATGAAGCAAAATTGAAAAAT+GGG | - | chr1_1:46251448-46251467 | Msa0024110:intron | 20.0% |
| !!! | TTTTCCAATTTTGTTTCATT+TGG | - | chr1_1:46251757-46251776 | Msa0024110:intron | 20.0% |
| !!! | TTTCCAATTTTGTTTCATTT+GGG | - | chr1_1:46251758-46251777 | Msa0024110:intron | 20.0% |
| !! | TAATATGTGGATATAGTTAT+TGG | + | chr1_1:46251841-46251860 | None:intergenic | 20.0% |
| !! | TTTGTTAAAGATTCTCAAAT+TGG | - | chr1_1:46252670-46252689 | Msa0024110:CDS | 20.0% |
| !!! | TATTAACTTGAAATAGTAGA+TGG | - | chr1_1:46253179-46253198 | Msa0024110:intron | 20.0% |
| !!! | ATGAGTTTTTGATAGAAATA+TGG | - | chr1_1:46253260-46253279 | Msa0024110:intron | 20.0% |
| !!! | TTTTGCTTATATTTTAGTGA+TGG | - | chr1_1:46253556-46253575 | Msa0024110:CDS | 20.0% |
| !!! | ATATTTTAGTGATGGATTAA+TGG | - | chr1_1:46253564-46253583 | Msa0024110:CDS | 20.0% |
| !! | AAATATTCCTTGATTATTCT+GGG | - | chr1_1:46253792-46253811 | Msa0024110:CDS | 20.0% |
| !!! | GAAAATAACTTGTGTTAAAA+TGG | + | chr1_1:46253827-46253846 | None:intergenic | 20.0% |
| !!! | TTTTTTTCTTCTTTTTGTTG+TGG | - | chr1_1:46254014-46254033 | Msa0024110:CDS | 20.0% |
| !!! | TAGTTGTTTCCTTATTAAAT+TGG | - | chr1_1:46254071-46254090 | Msa0024110:CDS | 20.0% |
| !!! | AGTTGTTTCCTTATTAAATT+GGG | - | chr1_1:46254072-46254091 | Msa0024110:CDS | 20.0% |
| !! | AAAAACAGCAGATTATAAAA+AGG | + | chr1_1:46254144-46254163 | None:intergenic | 20.0% |
| !! | ATTTATCAAATTTAGTTGAG+AGG | - | chr1_1:46254648-46254667 | Msa0024110:CDS | 20.0% |
| !!! | TTTGATTTGATATTTTCCTG+TGG | + | chr1_1:46244899-46244918 | None:intergenic | 25.0% |
| ! | GTGAAAATTGTTAAAGTTCA+TGG | - | chr1_1:46245411-46245430 | Msa0024110:CDS | 25.0% |
| ! | GAAAATTGTTAAAGTTCATG+GGG | - | chr1_1:46245413-46245432 | Msa0024110:CDS | 25.0% |
| !!! | ATGAAATCAATGTGTTGTTT+GGG | - | chr1_1:46245754-46245773 | Msa0024110:intron | 25.0% |
| ! | ATGAAAAGATTGGAAATGTT+CGG | - | chr1_1:46245844-46245863 | Msa0024110:intron | 25.0% |
| ! | GAATCAATAAAATCACCTTA+GGG | + | chr1_1:46246127-46246146 | None:intergenic | 25.0% |
| ! | AGAATCAATAAAATCACCTT+AGG | + | chr1_1:46246128-46246147 | None:intergenic | 25.0% |
| !!! | TAACTTTATCACTTTTTTCG+TGG | - | chr1_1:46246195-46246214 | Msa0024110:intron | 25.0% |
| ! | TATATGTTAATTTCTGTTCC+TGG | - | chr1_1:46246711-46246730 | Msa0024110:intron | 25.0% |
| ! | TCTCACAATATGAAAATATC+AGG | - | chr1_1:46246768-46246787 | Msa0024110:intron | 25.0% |
| ! | CTCACAATATGAAAATATCA+GGG | - | chr1_1:46246769-46246788 | Msa0024110:intron | 25.0% |
| ! | ACAGAGCAAAAATAATCAAA+TGG | + | chr1_1:46247060-46247079 | None:intergenic | 25.0% |
| ! | AGTCACATTGATAAAATTCA+CGG | + | chr1_1:46247486-46247505 | None:intergenic | 25.0% |
| !!! | TCTATAACCGTTATTTTTCA+TGG | - | chr1_1:46247697-46247716 | Msa0024110:intron | 25.0% |
| !! | ATCTGAAATGCCATATTTAT+CGG | - | chr1_1:46247826-46247845 | Msa0024110:intron | 25.0% |
| ! | CATTTAACAATATCACTGAA+AGG | + | chr1_1:46248009-46248028 | None:intergenic | 25.0% |
| ! | TCCAAATGAATGACATTAAA+GGG | + | chr1_1:46248072-46248091 | None:intergenic | 25.0% |
| ! | ATCCAAATGAATGACATTAA+AGG | + | chr1_1:46248073-46248092 | None:intergenic | 25.0% |
| !!! | ATCATTCATTTTAATGTGTC+TGG | - | chr1_1:46248188-46248207 | Msa0024110:intron | 25.0% |
| !! | ACTGTACTTTTCTAATTTAG+CGG | - | chr1_1:46248217-46248236 | Msa0024110:intron | 25.0% |
| ! | TGAACAGATAAGAAAAGAAA+TGG | - | chr1_1:46248440-46248459 | Msa0024110:intron | 25.0% |
| !! | AATGGTAAATAGTTTGGTTT+AGG | - | chr1_1:46248628-46248647 | Msa0024110:intron | 25.0% |
| !! | ATGGTAAATAGTTTGGTTTA+GGG | - | chr1_1:46248629-46248648 | Msa0024110:intron | 25.0% |
| ! | TTTAGGGATGAAATTTAAGT+TGG | - | chr1_1:46248645-46248664 | Msa0024110:intron | 25.0% |
| ! | AATTTACCAAAAGAATGCTA+AGG | + | chr1_1:46248673-46248692 | None:intergenic | 25.0% |
| ! | TTTAGTTGCATGATTTATTG+AGG | - | chr1_1:46248691-46248710 | Msa0024110:intron | 25.0% |
| !!! | TTCATTTTTGAGCAAATATC+TGG | - | chr1_1:46248772-46248791 | Msa0024110:intron | 25.0% |
| ! | TGGACTTGATTAAATGAAAA+AGG | - | chr1_1:46248842-46248861 | Msa0024110:intron | 25.0% |
| ! | TAGAAAAACCCTATTCTAAA+AGG | + | chr1_1:46248956-46248975 | None:intergenic | 25.0% |
| ! | TCAAAATAGTAAGTTTGCAT+TGG | - | chr1_1:46249006-46249025 | Msa0024110:intron | 25.0% |
| ! | ATTTCTTATCTTTAGTAACG+TGG | - | chr1_1:46249238-46249257 | Msa0024110:intron | 25.0% |
| ! | AGTTTCGATAACAATGTTAA+AGG | + | chr1_1:46249357-46249376 | None:intergenic | 25.0% |
| ! | TTATCGAAACTTAAACAAGA+AGG | - | chr1_1:46249366-46249385 | Msa0024110:intron | 25.0% |
| !!! | ATTTGAAGCTGTTTTTAAAG+GGG | - | chr1_1:46249536-46249555 | Msa0024110:intron | 25.0% |
| ! | TTAAACCAACTTGAGAAAAT+GGG | + | chr1_1:46249715-46249734 | None:intergenic | 25.0% |
| ! | TTTAAACCAACTTGAGAAAA+TGG | + | chr1_1:46249716-46249735 | None:intergenic | 25.0% |
| ! | AAATGCATTATTATATGCAG+GGG | + | chr1_1:46249834-46249853 | None:intergenic | 25.0% |
| ! | GAAATGCATTATTATATGCA+GGG | + | chr1_1:46249835-46249854 | None:intergenic | 25.0% |
| ! | AGGTAAGAAAATGTGATTTA+AGG | - | chr1_1:46250124-46250143 | Msa0024110:CDS | 25.0% |
| ! | AAACTAAATCCTAATTTAGG+AGG | + | chr1_1:46250187-46250206 | None:intergenic | 25.0% |
| !! | TAGGTAAATGTTAGTCATTT+TGG | + | chr1_1:46250488-46250507 | None:intergenic | 25.0% |
| ! | TACCTATTTAGAAAAGATGA+AGG | - | chr1_1:46250502-46250521 | Msa0024110:intron | 25.0% |
| !!! | ATTAAAGATTGGTCTTCATT+TGG | - | chr1_1:46252527-46252546 | Msa0024110:intron | 25.0% |
| ! | ATTAAATTCTGTCTCATAGA+CGG | + | chr1_1:46252576-46252595 | None:intergenic | 25.0% |
| !! | CAGAATTTAATTTCCTCTTT+CGG | - | chr1_1:46252585-46252604 | Msa0024110:intron | 25.0% |
| ! | AAAGATTCTCAAATTGGATA+AGG | - | chr1_1:46252676-46252695 | Msa0024110:CDS | 25.0% |
| ! | TCTTTCACTTAATATCTGTT+TGG | + | chr1_1:46252795-46252814 | None:intergenic | 25.0% |
| ! | AGATATTAAGTGAAAGAGAA+TGG | - | chr1_1:46252798-46252817 | Msa0024110:intron | 25.0% |
| !!! | AGAAAAGGCATTGAAATTTT+AGG | + | chr1_1:46252956-46252975 | None:intergenic | 25.0% |
| !! | GCTAAGAATTTCTTTTTGTA+TGG | - | chr1_1:46253095-46253114 | Msa0024110:intron | 25.0% |
| ! | TGGTATTTGATATAACATCA+TGG | - | chr1_1:46253280-46253299 | Msa0024110:intron | 25.0% |
| ! | GAAATATTCCTTGATTATTC+TGG | - | chr1_1:46253791-46253810 | Msa0024110:CDS | 25.0% |
| ! | TGACACAATTATGTAATGTT+TGG | + | chr1_1:46253854-46253873 | None:intergenic | 25.0% |
| !! | AAAATTTTGTTGAGGAACTT+CGG | - | chr1_1:46254434-46254453 | Msa0024110:CDS | 25.0% |
| ! | AACAAACTCAATATCTTCAT+AGG | + | chr1_1:46254678-46254697 | None:intergenic | 25.0% |
| !! | TCAAAAAAGATATTTTGCTG+TGG | - | chr1_1:46254702-46254721 | Msa0024110:CDS | 25.0% |
| ! | GGAGGAAAATTAAAAAAGAA+AGG | + | chr1_1:46254807-46254826 | None:intergenic | 25.0% |
| ! | GATATGAGGATTTTGCTTAA+TGG | - | chr1_1:46245351-46245370 | Msa0024110:CDS | 30.0% |
| ! | CTTAATGGATCTAAGTTTGT+TGG | - | chr1_1:46245366-46245385 | Msa0024110:CDS | 30.0% |
| ! | TTAACAATTTTCACAACCTC+AGG | + | chr1_1:46245405-46245424 | None:intergenic | 30.0% |
| !! | GAATCTTTCAAGTTGTATTC+TGG | - | chr1_1:46245708-46245727 | Msa0024110:intron | 30.0% |
| !! | TTTCAAGTTGTATTCTGGTA+GGG | - | chr1_1:46245713-46245732 | Msa0024110:intron | 30.0% |
| ! | CATGAAATCAATGTGTTGTT+TGG | - | chr1_1:46245753-46245772 | Msa0024110:intron | 30.0% |
| !! | GCTGATTTGAATGAAAAGAT+TGG | - | chr1_1:46245834-46245853 | Msa0024110:intron | 30.0% |
| TGAAAAGATTGGAAATGTTC+GGG | - | chr1_1:46245845-46245864 | Msa0024110:intron | 30.0% | |
| !! | AAGAAGAAGAAAGCTGTTTT+GGG | - | chr1_1:46245897-46245916 | Msa0024110:CDS | 30.0% |
| !! | TAATTTGTTAGAGCATCTGT+AGG | + | chr1_1:46246475-46246494 | None:intergenic | 30.0% |
| AACTCTTACCTCATGTAATT+TGG | - | chr1_1:46246613-46246632 | Msa0024110:intron | 30.0% | |
| CTCAAAACACAAGTTCAAAA+AGG | + | chr1_1:46246649-46246668 | None:intergenic | 30.0% | |
| ! | CTTTTTGAACTTGTGTTTTG+AGG | - | chr1_1:46246647-46246666 | Msa0024110:intron | 30.0% |
| ! | TTTTCATATTGTGAGACTCA+AGG | + | chr1_1:46246764-46246783 | None:intergenic | 30.0% |
| !! | TGATAGAAGAAGTTTTTGAG+AGG | - | chr1_1:46246845-46246864 | Msa0024110:intron | 30.0% |
| GAAACTCTTATGGGAAAATA+TGG | - | chr1_1:46246910-46246929 | Msa0024110:intron | 30.0% | |
| ACATGATCAGAAATATCAGA+AGG | + | chr1_1:46247092-46247111 | None:intergenic | 30.0% | |
| ACATGATCAGAAATATCAGA+AGG | + | chr1_1:46247092-46247111 | None:intergenic | 30.0% | |
| ATAGCTACAAATCTAGCAAA+TGG | + | chr1_1:46247388-46247407 | None:intergenic | 30.0% | |
| ATTCTAACAACCTCAAAATC+TGG | + | chr1_1:46247541-46247560 | None:intergenic | 30.0% | |
| !! | AACCAATACTTTTTGTAGCA+GGG | + | chr1_1:46247624-46247643 | None:intergenic | 30.0% |
| !! | AAACCAATACTTTTTGTAGC+AGG | + | chr1_1:46247625-46247644 | None:intergenic | 30.0% |
| AGACAGACCATGAAAAATAA+CGG | + | chr1_1:46247707-46247726 | None:intergenic | 30.0% | |
| ! | TGGTCTGTCTATATGTATTT+TGG | - | chr1_1:46247717-46247736 | Msa0024110:intron | 30.0% |
| ! | ATGACAAAGACTTGATAACA+AGG | + | chr1_1:46247954-46247973 | None:intergenic | 30.0% |
| GTGATATTGTTAAATGTGAC+TGG | - | chr1_1:46248013-46248032 | Msa0024110:intron | 30.0% | |
| ACCCTTTAATGTCATTCATT+TGG | - | chr1_1:46248068-46248087 | Msa0024110:intron | 30.0% | |
| GTTGAATCATAGAAAGTTAC+TGG | - | chr1_1:46248332-46248351 | Msa0024110:intron | 30.0% | |
| AATCATAGAAAGTTACTGGA+TGG | - | chr1_1:46248336-46248355 | Msa0024110:intron | 30.0% | |
| !! | CATATAGTTCTAAACTTCTC+AGG | + | chr1_1:46248387-46248406 | None:intergenic | 30.0% |
| AGATAAGAAAAGAAATGGTG+AGG | - | chr1_1:46248445-46248464 | Msa0024110:intron | 30.0% | |
| GATAAGAAAAGAAATGGTGA+GGG | - | chr1_1:46248446-46248465 | Msa0024110:intron | 30.0% | |
| CGTAGTTTATGCTTTATCAA+TGG | - | chr1_1:46248610-46248629 | Msa0024110:intron | 30.0% | |
| GTATATGTGAAGTAAGTAAC+CGG | + | chr1_1:46248734-46248753 | None:intergenic | 30.0% | |
| TTTGCTCAAAAATGAAGACA+CGG | + | chr1_1:46248768-46248787 | None:intergenic | 30.0% | |
| ! | ACCTGTATGTTTTCAAATGT+TGG | - | chr1_1:46248822-46248841 | Msa0024110:intron | 30.0% |
| TCCAACATTTGAAAACATAC+AGG | + | chr1_1:46248826-46248845 | None:intergenic | 30.0% | |
| TCAAGTATATTGCATTACAC+TGG | - | chr1_1:46248899-46248918 | Msa0024110:intron | 30.0% | |
| AATGTTACAACGAATTGTGT+CGG | + | chr1_1:46249159-46249178 | None:intergenic | 30.0% | |
| ! | GGAACTTTTGTTAAAGAGAA+AGG | - | chr1_1:46249327-46249346 | Msa0024110:intron | 30.0% |
| TAAATCAAAACGCCTTGATA+AGG | - | chr1_1:46249461-46249480 | Msa0024110:intron | 30.0% | |
| AGTCAAATACAACCTTATCA+AGG | + | chr1_1:46249476-46249495 | None:intergenic | 30.0% | |
| AGTATAATAATCAAGACCTC+TGG | + | chr1_1:46249508-46249527 | None:intergenic | 30.0% | |
| AGAGGTCTTGATTATTATAC+TGG | - | chr1_1:46249507-46249526 | Msa0024110:intron | 30.0% | |
| !!! | TTTGAAGCTGTTTTTAAAGG+GGG | - | chr1_1:46249537-46249556 | Msa0024110:intron | 30.0% |
| ! | TTTAGTTCCTTCATTCTTTG+AGG | - | chr1_1:46249614-46249633 | Msa0024110:intron | 30.0% |
| TTAGTTCCTTCATTCTTTGA+GGG | - | chr1_1:46249615-46249634 | Msa0024110:intron | 30.0% | |
| CAAAAATCATTATATCTGCC+CGG | - | chr1_1:46249639-46249658 | Msa0024110:intron | 30.0% | |
| !!! | CTTTTTCAAGGTGAATAAGT+GGG | - | chr1_1:46249786-46249805 | Msa0024110:intron | 30.0% |
| !!! | TTTTTCAAGGTGAATAAGTG+GGG | - | chr1_1:46249787-46249806 | Msa0024110:intron | 30.0% |
| GGAAATGCATTATTATATGC+AGG | + | chr1_1:46249836-46249855 | None:intergenic | 30.0% | |
| GCTAACACAAGATATAAAGA+AGG | - | chr1_1:46249872-46249891 | Msa0024110:intron | 30.0% | |
| ! | AGGATTAACAGTTCTTTTTC+TGG | - | chr1_1:46249892-46249911 | Msa0024110:intron | 30.0% |
| ! | CTTTTTCTGGATTAAACCAA+AGG | - | chr1_1:46249905-46249924 | Msa0024110:intron | 30.0% |
| AACTTCATAATCTTTCGTAC+AGG | + | chr1_1:46250066-46250085 | None:intergenic | 30.0% | |
| AACATTGTTAATGGTTTGAG+CGG | - | chr1_1:46250087-46250106 | Msa0024110:CDS | 30.0% | |
| TACAGATTACCTCCTAAATT+AGG | - | chr1_1:46250175-46250194 | Msa0024110:CDS | 30.0% | |
| AATTTAAGTAAGAGCTGACT+TGG | - | chr1_1:46250225-46250244 | Msa0024110:CDS | 30.0% | |
| !!! | TGACTTGGTTTTTGATGATT+TGG | - | chr1_1:46250240-46250259 | Msa0024110:CDS | 30.0% |
| GGCATAATTATTGTCTCAAT+TGG | + | chr1_1:46250412-46250431 | None:intergenic | 30.0% | |
| ! | GTCCTTCATCTTTTCTAAAT+AGG | + | chr1_1:46250507-46250526 | None:intergenic | 30.0% |
| AAATACTTCTCAAAACGAGA+AGG | + | chr1_1:46250815-46250834 | None:intergenic | 30.0% | |
| ! | ATCTGAAACAGAGAGATATA+GGG | + | chr1_1:46251229-46251248 | None:intergenic | 30.0% |
| ! | AATCTGAAACAGAGAGATAT+AGG | + | chr1_1:46251230-46251249 | None:intergenic | 30.0% |
| TAGTATAACAACTGTATCCA+TGG | + | chr1_1:46251272-46251291 | None:intergenic | 30.0% | |
| ! | GATGCAATTCAAGTTTATGA+AGG | - | chr1_1:46251341-46251360 | Msa0024110:intron | 30.0% |
| GAATCTGTTGATATTGTTCT+TGG | - | chr1_1:46251363-46251382 | Msa0024110:intron | 30.0% | |
| TCTGCTACATGATTATCAAA+AGG | - | chr1_1:46251486-46251505 | Msa0024110:intron | 30.0% | |
| GTTCATACCTGAAATGATTA+GGG | - | chr1_1:46251508-46251527 | Msa0024110:intron | 30.0% | |
| TTCATACCTGAAATGATTAG+GGG | - | chr1_1:46251509-46251528 | Msa0024110:intron | 30.0% | |
| TATGGTTTCAAGGAATTTCT+TGG | + | chr1_1:46251558-46251577 | None:intergenic | 30.0% | |
| CAGTGAATTATAACGGTAAA+GGG | - | chr1_1:46251581-46251600 | Msa0024110:intron | 30.0% | |
| !! | GAACATAAGGGTGTATATTT+TGG | - | chr1_1:46251603-46251622 | Msa0024110:intron | 30.0% |
| !! | AAGGGTGTATATTTTGGAAA+TGG | - | chr1_1:46251609-46251628 | Msa0024110:intron | 30.0% |
| GAACCCAAATGAAACAAAAT+TGG | + | chr1_1:46251764-46251783 | None:intergenic | 30.0% | |
| ! | TAATCTGAAACACAAGATAG+AGG | - | chr1_1:46251974-46251993 | Msa0024110:intron | 30.0% |
| ! | AATCTGAAACACAAGATAGA+GGG | - | chr1_1:46251975-46251994 | Msa0024110:intron | 30.0% |
| AATGAGATATAAGCTCATCA+AGG | + | chr1_1:46252193-46252212 | None:intergenic | 30.0% | |
| !! | GAATAAAAGGAAAAGTACTG+TGG | - | chr1_1:46252281-46252300 | Msa0024110:intron | 30.0% |
| AAACTCTTCTCAAAACAAGA+AGG | - | chr1_1:46252305-46252324 | Msa0024110:intron | 30.0% | |
| TCTGAACATGACTTTATAAG+TGG | - | chr1_1:46252699-46252718 | Msa0024110:CDS | 30.0% | |
| CTGAACATGACTTTATAAGT+GGG | - | chr1_1:46252700-46252719 | Msa0024110:CDS | 30.0% | |
| TGAACATGACTTTATAAGTG+GGG | - | chr1_1:46252701-46252720 | Msa0024110:CDS | 30.0% | |
| GATAGGATATAGTCAAACTT+TGG | - | chr1_1:46252880-46252899 | Msa0024110:intron | 30.0% | |
| !! | CATTGAAATTTTAGGAATGC+AGG | + | chr1_1:46252948-46252967 | None:intergenic | 30.0% |
| TTACTGATCAGATAAAGGAA+AGG | + | chr1_1:46253061-46253080 | None:intergenic | 30.0% | |
| CTCATTTACTGATCAGATAA+AGG | + | chr1_1:46253066-46253085 | None:intergenic | 30.0% | |
| TAACTTGAAATAGTAGATGG+AGG | - | chr1_1:46253182-46253201 | Msa0024110:intron | 30.0% | |
| AACTTGAAATAGTAGATGGA+GGG | - | chr1_1:46253183-46253202 | Msa0024110:intron | 30.0% | |
| ATGTCTGATAACATTAAGAG+GGG | + | chr1_1:46253329-46253348 | None:intergenic | 30.0% | |
| CATGTCTGATAACATTAAGA+GGG | + | chr1_1:46253330-46253349 | None:intergenic | 30.0% | |
| TAAATGAAACTGACAGAGAA+GGG | + | chr1_1:46253517-46253536 | None:intergenic | 30.0% | |
| ! | TGGATTAATGGTTTTTACAC+AGG | - | chr1_1:46253576-46253595 | Msa0024110:CDS | 30.0% |
| ! | TTAATGGTTTTTACACAGGT+TGG | - | chr1_1:46253580-46253599 | Msa0024110:CDS | 30.0% |
| TTCAATACCCAGAATAATCA+AGG | + | chr1_1:46253802-46253821 | None:intergenic | 30.0% | |
| !! | TTCTTTTTGTTGTGGTGTTT+TGG | - | chr1_1:46254022-46254041 | Msa0024110:CDS | 30.0% |
| GTCTAGGCAATAATATAACA+AGG | + | chr1_1:46254103-46254122 | None:intergenic | 30.0% | |
| !!! | AATCTGCTGTTTTTGTTAGA+TGG | - | chr1_1:46254150-46254169 | Msa0024110:CDS | 30.0% |
| ! | CCTCAACAAAATTTTCTCTA+GGG | + | chr1_1:46254429-46254448 | None:intergenic | 30.0% |
| ! | TCCTCAACAAAATTTTCTCT+AGG | + | chr1_1:46254430-46254449 | None:intergenic | 30.0% |
| GAAATTATCTCACGTAACTT+AGG | + | chr1_1:46254548-46254567 | None:intergenic | 30.0% | |
| TTTACACAGATAAACCACAA+CGG | + | chr1_1:46254770-46254789 | None:intergenic | 30.0% | |
| ! | GTATAAAACCAAAAGCGTAT+TGG | + | chr1_1:46254828-46254847 | None:intergenic | 30.0% |
| ! | GATTTGATATTTTCCTGTGG+CGG | + | chr1_1:46244896-46244915 | None:intergenic | 35.0% |
| GATAGTGATATTCTGCTTTG+AGG | + | chr1_1:46244962-46244981 | None:intergenic | 35.0% | |
| ! | TTCATCTAGGGTTAGGAATT+CGG | + | chr1_1:46244986-46245005 | None:intergenic | 35.0% |
| ! | AATCGCTAATGCAACGTTTT+TGG | + | chr1_1:46245061-46245080 | None:intergenic | 35.0% |
| !!! | GTTTTCAACTTGATGGATTC+TGG | - | chr1_1:46245288-46245307 | Msa0024110:CDS | 35.0% |
| ! | TGATGGACATACTTCTAAAG+AGG | - | chr1_1:46245311-46245330 | Msa0024110:CDS | 35.0% |
| ! | CATACTTCTAAAGAGGAAGT+TGG | - | chr1_1:46245318-46245337 | Msa0024110:CDS | 35.0% |
| !! | TGGATCTAAGTTTGTTGGAA+AGG | - | chr1_1:46245371-46245390 | Msa0024110:CDS | 35.0% |
| TTAAAGTTCATGGGGTTATG+AGG | - | chr1_1:46245421-46245440 | Msa0024110:intron | 35.0% | |
| TAAAGTTCATGGGGTTATGA+GGG | - | chr1_1:46245422-46245441 | Msa0024110:intron | 35.0% | |
| TTGAATTCGGGACATAAGTT+GGG | - | chr1_1:46245483-46245502 | Msa0024110:intron | 35.0% | |
| ! | TGGTAGCGATGATTTGAAAT+CGG | - | chr1_1:46245623-46245642 | Msa0024110:intron | 35.0% |
| !! | CTTTCAAGTTGTATTCTGGT+AGG | - | chr1_1:46245712-46245731 | Msa0024110:intron | 35.0% |
| ATTGGAAATGTTCGGGAAAA+TGG | - | chr1_1:46245852-46245871 | Msa0024110:intron | 35.0% | |
| ! | GAAGAAGAAGAAAGCTGTTT+TGG | - | chr1_1:46245896-46245915 | Msa0024110:CDS | 35.0% |
| !! | AGAAGAAGAAAGCTGTTTTG+GGG | - | chr1_1:46245898-46245917 | Msa0024110:CDS | 35.0% |
| AGAGTGATGTAGAGAATTTG+CGG | - | chr1_1:46245976-46245995 | Msa0024110:CDS | 35.0% | |
| TGTAGAGAATTTGCGGAAAT+TGG | - | chr1_1:46245983-46246002 | Msa0024110:CDS | 35.0% | |
| !!! | TGCTGATTTTCTGTCGTTTT+TGG | - | chr1_1:46246016-46246035 | Msa0024110:intron | 35.0% |
| AAAATCACCTTAGGGATCTT+GGG | + | chr1_1:46246119-46246138 | None:intergenic | 35.0% | |
| TAAAATCACCTTAGGGATCT+TGG | + | chr1_1:46246120-46246139 | None:intergenic | 35.0% | |
| !!! | CTCTTTTAGTTTGACAACCT+TGG | - | chr1_1:46246505-46246524 | Msa0024110:intron | 35.0% |
| !!! | TTTTAGTTTGACAACCTTGG+CGG | - | chr1_1:46246508-46246527 | Msa0024110:intron | 35.0% |
| ! | TACCTCATGTAATTTGGAAC+TGG | - | chr1_1:46246619-46246638 | Msa0024110:intron | 35.0% |
| TGTTAATTTCTGTTCCTGGT+TGG | - | chr1_1:46246715-46246734 | Msa0024110:intron | 35.0% | |
| GTTAATTTCTGTTCCTGGTT+GGG | - | chr1_1:46246716-46246735 | Msa0024110:intron | 35.0% | |
| TGAATTGCGAGAAACTCTTA+TGG | - | chr1_1:46246900-46246919 | Msa0024110:intron | 35.0% | |
| GAATTGCGAGAAACTCTTAT+GGG | - | chr1_1:46246901-46246920 | Msa0024110:intron | 35.0% | |
| GATTTATGATCTTGCTGATC+AGG | - | chr1_1:46246948-46246967 | Msa0024110:intron | 35.0% | |
| GAATTTCAGCTCATTCTAAC+TGG | - | chr1_1:46247304-46247323 | Msa0024110:intron | 35.0% | |
| TGGTAATCTACTTGTTTGAC+AGG | - | chr1_1:46247324-46247343 | Msa0024110:intron | 35.0% | |
| GGTAATCTACTTGTTTGACA+GGG | - | chr1_1:46247325-46247344 | Msa0024110:intron | 35.0% | |
| GCTAGATTTGTAGCTATGAA+TGG | - | chr1_1:46247391-46247410 | Msa0024110:intron | 35.0% | |
| CAATGTGACTTTGATATTGC+TGG | - | chr1_1:46247496-46247515 | Msa0024110:intron | 35.0% | |
| ! | AAAAATGGCTCCAGATTTTG+AGG | - | chr1_1:46247528-46247547 | Msa0024110:intron | 35.0% |
| TCAATTATCAGATTACCTGC+TGG | - | chr1_1:46247975-46247994 | Msa0024110:intron | 35.0% | |
| GTCACATCTAACAAGATCAT+GGG | + | chr1_1:46248123-46248142 | None:intergenic | 35.0% | |
| AGTCACATCTAACAAGATCA+TGG | + | chr1_1:46248124-46248143 | None:intergenic | 35.0% | |
| !! | ATAGTTCTAAACTTCTCAGG+AGG | + | chr1_1:46248384-46248403 | None:intergenic | 35.0% |
| CAGCTTAAGCACAACAAAAT+TGG | + | chr1_1:46248527-46248546 | None:intergenic | 35.0% | |
| !!! | AAGTTGCTGCCTTTTAGAAT+AGG | - | chr1_1:46248944-46248963 | Msa0024110:intron | 35.0% |
| !!! | AGTTGCTGCCTTTTAGAATA+GGG | - | chr1_1:46248945-46248964 | Msa0024110:intron | 35.0% |
| TGTGTCGGACATATTCTAAA+GGG | + | chr1_1:46249144-46249163 | None:intergenic | 35.0% | |
| TTGTGTCGGACATATTCTAA+AGG | + | chr1_1:46249145-46249164 | None:intergenic | 35.0% | |
| !! | ACTGATTTTCATGCTGTAGA+TGG | - | chr1_1:46249266-46249285 | Msa0024110:intron | 35.0% |
| AGTGCTTTCTTAGAAAATGC+TGG | - | chr1_1:46249390-46249409 | Msa0024110:intron | 35.0% | |
| !! | GAGCTCTGAATAAAATTTCC+AGG | + | chr1_1:46249437-46249456 | None:intergenic | 35.0% |
| ! | GGAAATTTTATTCAGAGCTC+TGG | - | chr1_1:46249437-46249456 | Msa0024110:intron | 35.0% |
| TAGTTCCTTCATTCTTTGAG+GGG | - | chr1_1:46249616-46249635 | Msa0024110:intron | 35.0% | |
| AAAGGTGAATTCTAGCCATT+AGG | + | chr1_1:46249770-46249789 | None:intergenic | 35.0% | |
| !! | GCTAGAATTCACCTTTTTCA+AGG | - | chr1_1:46249774-46249793 | Msa0024110:intron | 35.0% |
| CCACTTATTCACCTTGAAAA+AGG | + | chr1_1:46249788-46249807 | None:intergenic | 35.0% | |
| !!! | CCTTTTTCAAGGTGAATAAG+TGG | - | chr1_1:46249785-46249804 | Msa0024110:intron | 35.0% |
| GAGCTTTCACACTCAAAATA+AGG | - | chr1_1:46249927-46249946 | Msa0024110:intron | 35.0% | |
| TTTGAGCGGTCAAGATAAAT+AGG | - | chr1_1:46250101-46250120 | Msa0024110:CDS | 35.0% | |
| AAACCCATATAACCATGGAT+TGG | + | chr1_1:46250151-46250170 | None:intergenic | 35.0% | |
| ACAGAAAACCCATATAACCA+TGG | + | chr1_1:46250156-46250175 | None:intergenic | 35.0% | |
| GCGATGCTTAAAAATATGCA+AGG | - | chr1_1:46250340-46250359 | Msa0024110:intron | 35.0% | |
| GCTTAAAAATATGCAAGGTC+CGG | - | chr1_1:46250345-46250364 | Msa0024110:intron | 35.0% | |
| CTTAAAAATATGCAAGGTCC+GGG | - | chr1_1:46250346-46250365 | Msa0024110:intron | 35.0% | |
| TTAAAAATATGCAAGGTCCG+GGG | - | chr1_1:46250347-46250366 | Msa0024110:intron | 35.0% | |
| !!! | TCCAGTATCCTTTTTTTGGT+GGG | + | chr1_1:46250387-46250406 | None:intergenic | 35.0% |
| !!! | ATCCAGTATCCTTTTTTTGG+TGG | + | chr1_1:46250388-46250407 | None:intergenic | 35.0% |
| GGCACATGTTCAATATGAAA+AGG | + | chr1_1:46250467-46250486 | None:intergenic | 35.0% | |
| GCTGAAAGATTCATCTATGT+GGG | + | chr1_1:46250669-46250688 | None:intergenic | 35.0% | |
| TGCTGAAAGATTCATCTATG+TGG | + | chr1_1:46250670-46250689 | None:intergenic | 35.0% | |
| ATGAATCTTTCAGCATCACT+TGG | - | chr1_1:46250675-46250694 | Msa0024110:intron | 35.0% | |
| TGTTTCATCTGCAAGAAAAC+AGG | + | chr1_1:46250769-46250788 | None:intergenic | 35.0% | |
| TTTCTTGCAGATGAAACATG+TGG | - | chr1_1:46250771-46250790 | Msa0024110:intron | 35.0% | |
| CTCACAAAAGGAAAAGGAAA+AGG | + | chr1_1:46250846-46250865 | None:intergenic | 35.0% | |
| TACTAGCTCACAAAAGGAAA+AGG | + | chr1_1:46250852-46250871 | None:intergenic | 35.0% | |
| ACAATACTCAGAAGGACAAA+TGG | + | chr1_1:46250955-46250974 | None:intergenic | 35.0% | |
| AGTGAGTTACAATACTCAGA+AGG | + | chr1_1:46250963-46250982 | None:intergenic | 35.0% | |
| ! | ACACAACTCCTTATTTACAC+CGG | - | chr1_1:46251035-46251054 | Msa0024110:intron | 35.0% |
| AATGGAGTCGTGAAAAGAAA+GGG | + | chr1_1:46251070-46251089 | None:intergenic | 35.0% | |
| !! | TGAAGAGTATTCGAAGCATT+AGG | - | chr1_1:46251156-46251175 | Msa0024110:CDS | 35.0% |
| ! | TCTGAAACAGAGAGATATAG+GGG | + | chr1_1:46251228-46251247 | None:intergenic | 35.0% |
| ! | ATCCATGGCTAAAAGTCTTT+TGG | + | chr1_1:46251257-46251276 | None:intergenic | 35.0% |
| TTAATCTGAGCAGCAAAGTT+GGG | + | chr1_1:46251300-46251319 | None:intergenic | 35.0% | |
| AACAATATCCCTATGCTGAT+TGG | - | chr1_1:46251318-46251337 | Msa0024110:intron | 35.0% | |
| ! | ACAATATCCCTATGCTGATT+GGG | - | chr1_1:46251319-46251338 | Msa0024110:intron | 35.0% |
| TGATATTGTTCTTGGATGCA+TGG | - | chr1_1:46251371-46251390 | Msa0024110:intron | 35.0% | |
| TGTAGCAGATACAATTGAAG+CGG | + | chr1_1:46251475-46251494 | None:intergenic | 35.0% | |
| GGTTCATACCTGAAATGATT+AGG | - | chr1_1:46251507-46251526 | Msa0024110:intron | 35.0% | |
| CATAGCGCAGTGAATTATAA+CGG | - | chr1_1:46251574-46251593 | Msa0024110:intron | 35.0% | |
| GCAGTGAATTATAACGGTAA+AGG | - | chr1_1:46251580-46251599 | Msa0024110:intron | 35.0% | |
| ATAACGGTAAAGGGAACATA+AGG | - | chr1_1:46251590-46251609 | Msa0024110:intron | 35.0% | |
| TAACGGTAAAGGGAACATAA+GGG | - | chr1_1:46251591-46251610 | Msa0024110:intron | 35.0% | |
| ! | ATTCTTTGCCTTGAGTTTTG+AGG | + | chr1_1:46251644-46251663 | None:intergenic | 35.0% |
| TGGATTTGAATTTATCCCTG+AGG | + | chr1_1:46251813-46251832 | None:intergenic | 35.0% | |
| GGATATAGTTATTGGATGCA+TGG | + | chr1_1:46251833-46251852 | None:intergenic | 35.0% | |
| CAAGTCTTGGAAGTAATATG+TGG | + | chr1_1:46251854-46251873 | None:intergenic | 35.0% | |
| ATGGGATGAAATTCAAGTCT+TGG | + | chr1_1:46251867-46251886 | None:intergenic | 35.0% | |
| TTAATCTGGTCAGCAAAGTT+GGG | - | chr1_1:46251904-46251923 | Msa0024110:intron | 35.0% | |
| TTTGAATTGTCCAAAGTGTG+CGG | + | chr1_1:46252138-46252157 | None:intergenic | 35.0% | |
| ! | TTATTCTGAGAGCTAGTAGT+CGG | + | chr1_1:46252267-46252286 | None:intergenic | 35.0% |
| ! | CTACTAGCTCTCAGAATAAA+AGG | - | chr1_1:46252268-46252287 | Msa0024110:intron | 35.0% |
| TTCTCAAAACAAGAAGGCAA+AGG | - | chr1_1:46252311-46252330 | Msa0024110:intron | 35.0% | |
| AAGAAACATGTGGATTCCAT+TGG | + | chr1_1:46252342-46252361 | None:intergenic | 35.0% | |
| ATGGAATCCACATGTTTCTT+CGG | - | chr1_1:46252342-46252361 | Msa0024110:intron | 35.0% | |
| ATGAATCATTCAGCATCACT+TGG | + | chr1_1:46252450-46252469 | None:intergenic | 35.0% | |
| TGCTGAATGATTCATCTATG+AGG | - | chr1_1:46252455-46252474 | Msa0024110:intron | 35.0% | |
| GCTGAATGATTCATCTATGA+GGG | - | chr1_1:46252456-46252475 | Msa0024110:intron | 35.0% | |
| ATCTCTAAATGAACACGAAC+AGG | + | chr1_1:46252626-46252645 | None:intergenic | 35.0% | |
| GAACATGACTTTATAAGTGG+GGG | - | chr1_1:46252702-46252721 | Msa0024110:CDS | 35.0% | |
| ATAGTCAAACTTTGGCAAAC+TGG | - | chr1_1:46252888-46252907 | Msa0024110:intron | 35.0% | |
| AAACTGGTTGTTCAAAGAAG+AGG | - | chr1_1:46252904-46252923 | Msa0024110:intron | 35.0% | |
| TGCAGGTAGGTTATTAAACT+TGG | + | chr1_1:46252931-46252950 | None:intergenic | 35.0% | |
| !! | GAAATTTTAGGAATGCAGGT+AGG | + | chr1_1:46252944-46252963 | None:intergenic | 35.0% |
| TGTAGCAAAACATGTTATGC+AGG | - | chr1_1:46253012-46253031 | Msa0024110:intron | 35.0% | |
| AAACATGTTATGCAGGATAG+TGG | - | chr1_1:46253019-46253038 | Msa0024110:intron | 35.0% | |
| CCATGTCTGATAACATTAAG+AGG | + | chr1_1:46253331-46253350 | None:intergenic | 35.0% | |
| CCTCTTAATGTTATCAGACA+TGG | - | chr1_1:46253328-46253347 | Msa0024110:intron | 35.0% | |
| ! | TGGTTGTTGTTGTTGTAGAT+TGG | - | chr1_1:46253348-46253367 | Msa0024110:intron | 35.0% |
| ! | GGTTGTTGTTGTTGTAGATT+GGG | - | chr1_1:46253349-46253368 | Msa0024110:intron | 35.0% |
| AAATCCTTGATTCTTGAGAG+TGG | - | chr1_1:46253455-46253474 | Msa0024110:intron | 35.0% | |
| GTAAATGAAACTGACAGAGA+AGG | + | chr1_1:46253518-46253537 | None:intergenic | 35.0% | |
| TATCAAGCATTATGATCACC+TGG | + | chr1_1:46253738-46253757 | None:intergenic | 35.0% | |
| TATCTATCTGATGGAGGATA+TGG | + | chr1_1:46253893-46253912 | None:intergenic | 35.0% | |
| AGGACGTTCCCAATTTAATA+AGG | + | chr1_1:46254083-46254102 | None:intergenic | 35.0% | |
| AACTGTTAGTTCATCTGTCT+AGG | + | chr1_1:46254119-46254138 | None:intergenic | 35.0% | |
| AAGTCCTAGTGAGCATATTA+GGG | - | chr1_1:46254191-46254210 | Msa0024110:CDS | 35.0% | |
| TGGAGTTAAAGCAGAATTCT+TGG | - | chr1_1:46254261-46254280 | Msa0024110:CDS | 35.0% | |
| ! | TTTGCATAGTCAAAGTGCTT+TGG | + | chr1_1:46254301-46254320 | None:intergenic | 35.0% |
| CAAAAGAATCAAGAATCCCT+TGG | - | chr1_1:46254317-46254336 | Msa0024110:CDS | 35.0% | |
| ! | CCCTAGAGAAAATTTTGTTG+AGG | - | chr1_1:46254426-46254445 | Msa0024110:CDS | 35.0% |
| !! | GCGTTTTCACAATGATAATG+CGG | - | chr1_1:46254519-46254538 | Msa0024110:CDS | 35.0% |
| GTACGACAAACAATGAACAA+CGG | + | chr1_1:46254580-46254599 | None:intergenic | 35.0% | |
| ! | TACTCTAGTTGAAGGAGTAT+AGG | - | chr1_1:46254597-46254616 | Msa0024110:CDS | 35.0% |
| GGAGTAGACTAATTGAACTT+TGG | - | chr1_1:46254723-46254742 | Msa0024110:CDS | 35.0% | |
| !!! | ACGGAACAGTTATTTTAGGT+TGG | + | chr1_1:46254751-46254770 | None:intergenic | 35.0% |
| !! | CACAACGGAACAGTTATTTT+AGG | + | chr1_1:46254755-46254774 | None:intergenic | 35.0% |
| CTAAAATAACTGTTCCGTTG+TGG | - | chr1_1:46254753-46254772 | Msa0024110:CDS | 35.0% | |
| ! | ATTTTCCTCCAATACGCTTT+TGG | - | chr1_1:46254817-46254836 | Msa0024110:five_prime_UTR | 35.0% |
| ! | TAAAACCAAAAGCGTATTGG+AGG | + | chr1_1:46254825-46254844 | None:intergenic | 35.0% |
| AGAGAGAGAAACAGGGTTTA+GGG | + | chr1_1:46244800-46244819 | None:intergenic | 40.0% | |
| ! | TTTTGCGAGAGAGAGAAACA+GGG | + | chr1_1:46244807-46244826 | None:intergenic | 40.0% |
| ! | ATTTTGCGAGAGAGAGAAAC+AGG | + | chr1_1:46244808-46244827 | None:intergenic | 40.0% |
| TGTTTCTCTCTCTCGCAAAA+TGG | - | chr1_1:46244807-46244826 | Msa0024110:three_prime_UTR | 40.0% | |
| !! | ATATTCTGCTTTGAGGATGG+TGG | + | chr1_1:46244955-46244974 | None:intergenic | 40.0% |
| !! | GTGATATTCTGCTTTGAGGA+TGG | + | chr1_1:46244958-46244977 | None:intergenic | 40.0% |
| ! | TCATCTAGGGTTAGGAATTC+GGG | + | chr1_1:46244985-46245004 | None:intergenic | 40.0% |
| ! | GTTTGTTGAGAAGAACGATG+AGG | + | chr1_1:46245020-46245039 | None:intergenic | 40.0% |
| !! | CGTTTTTGGATGAATTGCAG+AGG | + | chr1_1:46245047-46245066 | None:intergenic | 40.0% |
| CTCTTCATCGAATCGAAAAC+TGG | + | chr1_1:46245109-46245128 | None:intergenic | 40.0% | |
| ! | TGATTGATGATCCAAAACCG+CGG | + | chr1_1:46245199-46245218 | None:intergenic | 40.0% |
| !!! | GGTTTTGGATCATCAATCAG+CGG | - | chr1_1:46245200-46245219 | Msa0024110:CDS | 40.0% |
| !! | GTTTTGGATCATCAATCAGC+GGG | - | chr1_1:46245201-46245220 | Msa0024110:CDS | 40.0% |
| !! | ATCAATCAGCGGGTTTGTTA+GGG | - | chr1_1:46245211-46245230 | Msa0024110:CDS | 40.0% |
| !! | TTTGTTAGGGTTTGCTGATG+TGG | - | chr1_1:46245224-46245243 | Msa0024110:CDS | 40.0% |
| ! | TGTGACGGTTTTCAACTTGA+TGG | - | chr1_1:46245281-46245300 | Msa0024110:CDS | 40.0% |
| !! | AACTTGATGGATTCTGGTGA+TGG | - | chr1_1:46245294-46245313 | Msa0024110:CDS | 40.0% |
| TATGAGGGAGAAAGCGAAAT+CGG | - | chr1_1:46245437-46245456 | Msa0024110:intron | 40.0% | |
| GTTGAATTCGGGACATAAGT+TGG | - | chr1_1:46245482-46245501 | Msa0024110:intron | 40.0% | |
| TGAATTCGGGACATAAGTTG+GGG | - | chr1_1:46245484-46245503 | Msa0024110:intron | 40.0% | |
| AAGTTGGGGAAATTGGATCT+TGG | - | chr1_1:46245498-46245517 | Msa0024110:intron | 40.0% | |
| AGTTGGGGAAATTGGATCTT+GGG | - | chr1_1:46245499-46245518 | Msa0024110:intron | 40.0% | |
| !! | GTGTGATGTGTTGTTTCCTT+TGG | - | chr1_1:46245536-46245555 | Msa0024110:intron | 40.0% |
| !! | TGTGTTGTTTCCTTTGGCAA+TGG | - | chr1_1:46245542-46245561 | Msa0024110:intron | 40.0% |
| ! | GGTAGCGATGATTTGAAATC+GGG | - | chr1_1:46245624-46245643 | Msa0024110:intron | 40.0% |
| ! | GATGATTTGAAATCGGGTCT+CGG | - | chr1_1:46245630-46245649 | Msa0024110:intron | 40.0% |
| CTAACCAAACTAGCATCAGT+TGG | + | chr1_1:46245678-46245697 | None:intergenic | 40.0% | |
| ATTTGCGGAAATTGGAGAGT+TGG | - | chr1_1:46245991-46246010 | Msa0024110:intron | 40.0% | |
| TTTGCGGAAATTGGAGAGTT+GGG | - | chr1_1:46245992-46246011 | Msa0024110:intron | 40.0% | |
| AAACCATTCATTAGAAGGGC+TGG | - | chr1_1:46246297-46246316 | Msa0024110:intron | 40.0% | |
| TAACCAGCCCTTCTAATGAA+TGG | + | chr1_1:46246303-46246322 | None:intergenic | 40.0% | |
| GTAATCTGATCTGGTATGAC+AGG | - | chr1_1:46246535-46246554 | Msa0024110:intron | 40.0% | |
| CACCAGTTCCAAATTACATG+AGG | + | chr1_1:46246624-46246643 | None:intergenic | 40.0% | |
| !! | GAAGAAGTTTTTGAGAGGCA+TGG | - | chr1_1:46246850-46246869 | Msa0024110:intron | 40.0% |
| TTCAAAGACAGGTGTATCCA+AGG | + | chr1_1:46246884-46246903 | None:intergenic | 40.0% | |
| GTTTCTCGCAATTCAAAGAC+AGG | + | chr1_1:46246895-46246914 | None:intergenic | 40.0% | |
| TATAAACCAGACCGCCATTA+AGG | - | chr1_1:46247134-46247153 | Msa0024110:intron | 40.0% | |
| TATAAACCAGACCGCCATTA+AGG | - | chr1_1:46247134-46247153 | Msa0024110:intron | 40.0% | |
| AATCTACTTGTTTGACAGGG+TGG | - | chr1_1:46247328-46247347 | Msa0024110:intron | 40.0% | |
| ! | ATGGCCTGACATCTTTGAAA+AGG | - | chr1_1:46247410-46247429 | Msa0024110:intron | 40.0% |
| ! | GGTACCTTTTCAAAGATGTC+AGG | + | chr1_1:46247417-46247436 | None:intergenic | 40.0% |
| TTCGGTAGACTTTAGCTATC+TGG | + | chr1_1:46247438-46247457 | None:intergenic | 40.0% | |
| AGATAGCTAAAGTCTACCGA+AGG | - | chr1_1:46247437-46247456 | Msa0024110:intron | 40.0% | |
| GATAGCTAAAGTCTACCGAA+GGG | - | chr1_1:46247438-46247457 | Msa0024110:intron | 40.0% | |
| CACGGTATCTTCCTTTAGAT+GGG | + | chr1_1:46247468-46247487 | None:intergenic | 40.0% | |
| TCACGGTATCTTCCTTTAGA+TGG | + | chr1_1:46247469-46247488 | None:intergenic | 40.0% | |
| TTGCTTGATGAGCTGAACAT+TGG | - | chr1_1:46247571-46247590 | Msa0024110:intron | 40.0% | |
| TGCTTGATGAGCTGAACATT+GGG | - | chr1_1:46247572-46247591 | Msa0024110:intron | 40.0% | |
| ! | GTCCCTGCTACAAAAAGTAT+TGG | - | chr1_1:46247619-46247638 | Msa0024110:intron | 40.0% |
| AGTATATGTGCTGGGCTTAT+AGG | - | chr1_1:46247780-46247799 | Msa0024110:intron | 40.0% | |
| ATGCCATATTTATCGGCATC+AGG | - | chr1_1:46247833-46247852 | Msa0024110:intron | 40.0% | |
| TGACCTGATGCCGATAAATA+TGG | + | chr1_1:46247839-46247858 | None:intergenic | 40.0% | |
| TAAACTGTAGCACATGAGAC+AGG | + | chr1_1:46247930-46247949 | None:intergenic | 40.0% | |
| GATGGCATGATGCAAATATG+TGG | - | chr1_1:46248354-46248373 | Msa0024110:intron | 40.0% | |
| !! | TTGGTGCCTTAGCATTCTTT+TGG | - | chr1_1:46248664-46248683 | Msa0024110:intron | 40.0% |
| GAAGTAAGTAACCGGTTACA+AGG | + | chr1_1:46248726-46248745 | None:intergenic | 40.0% | |
| ATGCTGTAGATGGAAGAGAA+AGG | - | chr1_1:46249276-46249295 | Msa0024110:intron | 40.0% | |
| TGTTGATGCATTGAATGACC+TGG | - | chr1_1:46249416-46249435 | Msa0024110:intron | 40.0% | |
| ! | TTTTGCCCCTCAAAGAATGA+AGG | + | chr1_1:46249624-46249643 | None:intergenic | 40.0% |
| TTATATCTGCCCGGATATAG+TGG | - | chr1_1:46249648-46249667 | Msa0024110:intron | 40.0% | |
| AGTGAACATCCACTATATCC+GGG | + | chr1_1:46249660-46249679 | None:intergenic | 40.0% | |
| CAGTGAACATCCACTATATC+CGG | + | chr1_1:46249661-46249680 | None:intergenic | 40.0% | |
| ! | CTAGACCCATTTTCTCAAGT+TGG | - | chr1_1:46249707-46249726 | Msa0024110:intron | 40.0% |
| TTGTGTTAGCATAGCTCAGT+TGG | + | chr1_1:46249862-46249881 | None:intergenic | 40.0% | |
| TTTGAGTGTGAAAGCTCCTT+TGG | + | chr1_1:46249924-46249943 | None:intergenic | 40.0% | |
| ! | GTGATTTAAGGTCCAATCCA+TGG | - | chr1_1:46250136-46250155 | Msa0024110:CDS | 40.0% |
| AGGTCCAATCCATGGTTATA+TGG | - | chr1_1:46250144-46250163 | Msa0024110:CDS | 40.0% | |
| GGTCCAATCCATGGTTATAT+GGG | - | chr1_1:46250145-46250164 | Msa0024110:CDS | 40.0% | |
| !!! | CAGTATCCTTTTTTTGGTGG+GGG | + | chr1_1:46250385-46250404 | None:intergenic | 40.0% |
| !!! | CCAGTATCCTTTTTTTGGTG+GGG | + | chr1_1:46250386-46250405 | None:intergenic | 40.0% |
| !!! | GGCATCCAGTATCCTTTTTT+TGG | + | chr1_1:46250391-46250410 | None:intergenic | 40.0% |
| TTGTTGCACCGTCTATTAGA+TGG | + | chr1_1:46250557-46250576 | None:intergenic | 40.0% | |
| TGGCAATAAAGTTGCAGTAG+AGG | + | chr1_1:46250643-46250662 | None:intergenic | 40.0% | |
| AGATTCATCTATGTGGGTGA+TGG | + | chr1_1:46250663-46250682 | None:intergenic | 40.0% | |
| TGAAAAGAAAGGGTTGCATG+TGG | + | chr1_1:46250710-46250729 | None:intergenic | 40.0% | |
| ! | AACCCTTTCTTTTCATGCCA+TGG | - | chr1_1:46250715-46250734 | Msa0024110:intron | 40.0% |
| ! | ACCCTTTCTTTTCATGCCAT+GGG | - | chr1_1:46250716-46250735 | Msa0024110:intron | 40.0% |
| TACTTCTCAAAACGAGAAGG+CGG | + | chr1_1:46250812-46250831 | None:intergenic | 40.0% | |
| CTTGACTACTAGCTCACAAA+AGG | + | chr1_1:46250858-46250877 | None:intergenic | 40.0% | |
| TATATCTCACTGTGTGCAAG+AGG | + | chr1_1:46250918-46250937 | None:intergenic | 40.0% | |
| CACAGTGAGATATAAGCTCA+TGG | - | chr1_1:46250924-46250943 | Msa0024110:intron | 40.0% | |
| AGTGAGATATAAGCTCATGG+AGG | - | chr1_1:46250927-46250946 | Msa0024110:intron | 40.0% | |
| GTGAGATATAAGCTCATGGA+GGG | - | chr1_1:46250928-46250947 | Msa0024110:intron | 40.0% | |
| TGAGATATAAGCTCATGGAG+GGG | - | chr1_1:46250929-46250948 | Msa0024110:intron | 40.0% | |
| !! | AGTTGTGTTGATTGTGCACT+TGG | + | chr1_1:46251023-46251042 | None:intergenic | 40.0% |
| CAATGGAGTCGTGAAAAGAA+AGG | + | chr1_1:46251071-46251090 | None:intergenic | 40.0% | |
| ! | CTTTCTTTTCACGACTCCAT+TGG | - | chr1_1:46251069-46251088 | Msa0024110:intron | 40.0% |
| TGATTCAGATTATTGCCGAG+AGG | + | chr1_1:46251110-46251129 | None:intergenic | 40.0% | |
| ! | ATTCGAAGCATTAGGAGTAC+CGG | - | chr1_1:46251164-46251183 | Msa0024110:CDS | 40.0% |
| GCTTGTGATTCTTCATCAAC+CGG | + | chr1_1:46251186-46251205 | None:intergenic | 40.0% | |
| ! | TGCCAAAAGACTTTTAGCCA+TGG | - | chr1_1:46251252-46251271 | Msa0024110:CDS | 40.0% |
| GTTAATCTGAGCAGCAAAGT+TGG | + | chr1_1:46251301-46251320 | None:intergenic | 40.0% | |
| ATTGCATCCCAATCAGCATA+GGG | + | chr1_1:46251329-46251348 | None:intergenic | 40.0% | |
| AATTGCATCCCAATCAGCAT+AGG | + | chr1_1:46251330-46251349 | None:intergenic | 40.0% | |
| !! | TGCTTCATTTGGGTTCTAAG+CGG | + | chr1_1:46251436-46251455 | None:intergenic | 40.0% |
| ATTCAGCCCCTAATCATTTC+AGG | + | chr1_1:46251518-46251537 | None:intergenic | 40.0% | |
| CGTTATAATTCACTGCGCTA+TGG | + | chr1_1:46251576-46251595 | None:intergenic | 40.0% | |
| CAAGGCAAAGAATTACTCCA+CGG | - | chr1_1:46251651-46251670 | Msa0024110:intron | 40.0% | |
| AGAATTACTCCACGGTTTCA+AGG | - | chr1_1:46251659-46251678 | Msa0024110:intron | 40.0% | |
| CAAGAAATTCCTTGAAACCG+TGG | + | chr1_1:46251671-46251690 | None:intergenic | 40.0% | |
| AATTGAGCCCTAAGCATTTC+AGG | - | chr1_1:46251706-46251725 | Msa0024110:intron | 40.0% | |
| GTAGGCACATACGATTGTAT+CGG | - | chr1_1:46251728-46251747 | Msa0024110:intron | 40.0% | |
| ! | ACACGAGGTTGTTGTTAATC+TGG | - | chr1_1:46251890-46251909 | Msa0024110:intron | 40.0% |
| GTTAATCTGGTCAGCAAAGT+TGG | - | chr1_1:46251903-46251922 | Msa0024110:intron | 40.0% | |
| TTTCACGACTCAATGGCATT+AGG | + | chr1_1:46252049-46252068 | None:intergenic | 40.0% | |
| AGTTGTCTTGATTGTGCACT+TGG | - | chr1_1:46252097-46252116 | Msa0024110:CDS | 40.0% | |
| TTGAATTGTCCAAAGTGTGC+GGG | + | chr1_1:46252137-46252156 | None:intergenic | 40.0% | |
| AGCGAGTTACAATACTCAGA+AGG | - | chr1_1:46252157-46252176 | Msa0024110:CDS | 40.0% | |
| ACAATACTCAGAAGGACCAA+TGG | - | chr1_1:46252165-46252184 | Msa0024110:CDS | 40.0% | |
| TAAGCTCATCAAGGAACCAT+TGG | + | chr1_1:46252184-46252203 | None:intergenic | 40.0% | |
| TATATCTCATTGTGTGCGAG+AGG | - | chr1_1:46252202-46252221 | Msa0024110:CDS | 40.0% | |
| ! | TATTCTGAGAGCTAGTAGTC+GGG | + | chr1_1:46252266-46252285 | None:intergenic | 40.0% |
| AACATGTGGATTCCATTGGT+TGG | + | chr1_1:46252338-46252357 | None:intergenic | 40.0% | |
| TTTCTTGCCGAAGAAACATG+TGG | + | chr1_1:46252352-46252371 | None:intergenic | 40.0% | |
| ATTGTTCCAAATACACCGCA+TGG | - | chr1_1:46252391-46252410 | Msa0024110:intron | 40.0% | |
| TTTCCTCTTTCGGACAAATC+TGG | - | chr1_1:46252595-46252614 | Msa0024110:intron | 40.0% | |
| TAACCAGATTTGTCCGAAAG+AGG | + | chr1_1:46252601-46252620 | None:intergenic | 40.0% | |
| CCACACAACAGAGAAAGAAA+AGG | + | chr1_1:46252971-46252990 | None:intergenic | 40.0% | |
| ! | CCTTTTCTTTCTCTGTTGTG+TGG | - | chr1_1:46252968-46252987 | Msa0024110:intron | 40.0% |
| GGTAGTCAAATAGTAGAGGA+AGG | - | chr1_1:46253204-46253223 | Msa0024110:intron | 40.0% | |
| CTGATAACATTAAGAGGGGT+CGG | + | chr1_1:46253325-46253344 | None:intergenic | 40.0% | |
| GTCGATACGATAACCTGATA+GGG | - | chr1_1:46253620-46253639 | Msa0024110:CDS | 40.0% | |
| GATAACCTGATAGGGATGTT+TGG | - | chr1_1:46253628-46253647 | Msa0024110:CDS | 40.0% | |
| !! | CGAGAGAGTATTTGCCATAA+TGG | - | chr1_1:46253690-46253709 | Msa0024110:CDS | 40.0% |
| CTTCTGTTGTTGCTCCATTA+TGG | + | chr1_1:46253707-46253726 | None:intergenic | 40.0% | |
| ! | CATAATGGAGCAACAACAGA+AGG | - | chr1_1:46253705-46253724 | Msa0024110:CDS | 40.0% |
| TCTGATGGAGGATATGGTTT+AGG | + | chr1_1:46253887-46253906 | None:intergenic | 40.0% | |
| CAGACAGTATAAGTAACAGC+AGG | + | chr1_1:46253918-46253937 | None:intergenic | 40.0% | |
| ! | CTGCTGTTACTTATACTGTC+TGG | - | chr1_1:46253916-46253935 | Msa0024110:CDS | 40.0% |
| GATGACTTGATTCATCACCA+CGG | - | chr1_1:46253941-46253960 | Msa0024110:CDS | 40.0% | |
| ATGACTTGATTCATCACCAC+GGG | - | chr1_1:46253942-46253961 | Msa0024110:CDS | 40.0% | |
| GGGGATGTATCTAATCACTA+GGG | - | chr1_1:46253962-46253981 | Msa0024110:CDS | 40.0% | |
| GGGATGTATCTAATCACTAG+GGG | - | chr1_1:46253963-46253982 | Msa0024110:CDS | 40.0% | |
| GAAGTCCTAGTGAGCATATT+AGG | - | chr1_1:46254190-46254209 | Msa0024110:CDS | 40.0% | |
| CATTCCCTAATATGCTCACT+AGG | + | chr1_1:46254198-46254217 | None:intergenic | 40.0% | |
| ATCCCTTGGATGATACTTGT+TGG | - | chr1_1:46254331-46254350 | Msa0024110:CDS | 40.0% | |
| CACCAACAAGTATCATCCAA+GGG | + | chr1_1:46254336-46254355 | None:intergenic | 40.0% | |
| TCACCAACAAGTATCATCCA+AGG | + | chr1_1:46254337-46254356 | None:intergenic | 40.0% | |
| GGTGAGCAGGAAATAAAAGA+AGG | - | chr1_1:46254352-46254371 | Msa0024110:CDS | 40.0% | |
| GCAGGAAATAAAAGAAGGCA+CGG | - | chr1_1:46254357-46254376 | Msa0024110:CDS | 40.0% | |
| ! | TTACATCATTACCTGACTCG+AGG | + | chr1_1:46254396-46254415 | None:intergenic | 40.0% |
| TTGTTGAGGAACTTCGGAAA+CGG | - | chr1_1:46254440-46254459 | Msa0024110:CDS | 40.0% | |
| AAGTAGGATGCTACAAACAC+CGG | + | chr1_1:46254481-46254500 | None:intergenic | 40.0% | |
| GTTTGTCGTACTCTAGTTGA+AGG | - | chr1_1:46254589-46254608 | Msa0024110:CDS | 40.0% | |
| GGGTTCAGTTCAGAAATGCA+GGG | + | chr1_1:46244780-46244799 | None:intergenic | 45.0% | |
| AGGGTTCAGTTCAGAAATGC+AGG | + | chr1_1:46244781-46244800 | None:intergenic | 45.0% | |
| GAGAGAGAGAAACAGGGTTT+AGG | + | chr1_1:46244801-46244820 | None:intergenic | 45.0% | |
| ! | TTGATATTTTCCTGTGGCGG+TGG | + | chr1_1:46244893-46244912 | None:intergenic | 45.0% |
| ! | AGGATGGTGGTGAGGTTAAT+CGG | + | chr1_1:46244942-46244961 | None:intergenic | 45.0% |
| ! | CATCTAGGGTTAGGAATTCG+GGG | + | chr1_1:46244984-46245003 | None:intergenic | 45.0% |
| GTTGAGAAGAACGATGAGGA+AGG | + | chr1_1:46245016-46245035 | None:intergenic | 45.0% | |
| ! | GTTGATGAACAACGAGTGTG+CGG | - | chr1_1:46245158-46245177 | Msa0024110:CDS | 45.0% |
| ! | CATCAATCAGCGGGTTTGTT+AGG | - | chr1_1:46245210-46245229 | Msa0024110:CDS | 45.0% |
| !!! | GTTTTCGTGTGAGGCATTGA+AGG | - | chr1_1:46245254-46245273 | Msa0024110:CDS | 45.0% |
| ! | GGCATTGAAGGCTAATGTGA+CGG | - | chr1_1:46245266-46245285 | Msa0024110:CDS | 45.0% |
| !! | AAAGAGGAAGTTGGTGTTGC+TGG | - | chr1_1:46245327-46245346 | Msa0024110:CDS | 45.0% |
| !! | TTGGTGTTGCTGGTGATATG+AGG | - | chr1_1:46245337-46245356 | Msa0024110:CDS | 45.0% |
| !! | TGGAAAGGAAAGTGTTCCTG+AGG | - | chr1_1:46245386-46245405 | Msa0024110:CDS | 45.0% |
| !! | GATGCGGGTTGAGTTGAATT+CGG | - | chr1_1:46245470-46245489 | Msa0024110:intron | 45.0% |
| !! | ATGCGGGTTGAGTTGAATTC+GGG | - | chr1_1:46245471-46245490 | Msa0024110:intron | 45.0% |
| ! | GGGACATAAGTTGGGGAAAT+TGG | - | chr1_1:46245491-46245510 | Msa0024110:intron | 45.0% |
| ! | TCTCGGTGAAATCTTTGGGA+AGG | - | chr1_1:46245647-46245666 | Msa0024110:intron | 45.0% |
| GTGTCCAACTGATGCTAGTT+TGG | - | chr1_1:46245671-46245690 | Msa0024110:intron | 45.0% | |
| !! | ATGTGTTGTTTGGGCTTGTG+TGG | - | chr1_1:46245763-46245782 | Msa0024110:intron | 45.0% |
| TGGGCTTGTGTGGAAAATTG+TGG | - | chr1_1:46245773-46245792 | Msa0024110:intron | 45.0% | |
| TTGTGTGGAAAATTGTGGCG+TGG | - | chr1_1:46245778-46245797 | Msa0024110:intron | 45.0% | |
| TGTGTGGAAAATTGTGGCGT+GGG | - | chr1_1:46245779-46245798 | Msa0024110:intron | 45.0% | |
| !!! | AAGAAAGCTGTTTTGGGGAG+AGG | - | chr1_1:46245903-46245922 | Msa0024110:CDS | 45.0% |
| GAGAGGAACTAGTTCGATCT+TGG | - | chr1_1:46245920-46245939 | Msa0024110:CDS | 45.0% | |
| TTCGATCTTGGCGTTGCTTA+AGG | - | chr1_1:46245932-46245951 | Msa0024110:CDS | 45.0% | |
| TCTTGGCGTTGCTTAAGGAA+AGG | - | chr1_1:46245937-46245956 | Msa0024110:CDS | 45.0% | |
| AAGATTGCCCAAGATCCCTA+AGG | - | chr1_1:46246109-46246128 | Msa0024110:intron | 45.0% | |
| ATCAGATTACAACTCCGCCA+AGG | + | chr1_1:46246525-46246544 | None:intergenic | 45.0% | |
| GCGAACCAAATCCTTAATGG+CGG | + | chr1_1:46247148-46247167 | None:intergenic | 45.0% | |
| GGTGCGAACCAAATCCTTAA+TGG | + | chr1_1:46247151-46247170 | None:intergenic | 45.0% | |
| GCGAACCAAATCCTTAATGG+CGG | + | chr1_1:46247148-46247167 | None:intergenic | 45.0% | |
| GGTGCGAACCAAATCCTTAA+TGG | + | chr1_1:46247151-46247170 | None:intergenic | 45.0% | |
| !! | CTTTAGATGGGTTGTCCCTT+CGG | + | chr1_1:46247456-46247475 | None:intergenic | 45.0% |
| TGCTGGTCCAGCTGAAAAAA+TGG | - | chr1_1:46247513-46247532 | Msa0024110:intron | 45.0% | |
| !!! | TCTGGAGCCATTTTTTCAGC+TGG | + | chr1_1:46247523-46247542 | None:intergenic | 45.0% |
| GCTTGATGAGCTGAACATTG+GGG | - | chr1_1:46247573-46247592 | Msa0024110:intron | 45.0% | |
| ! | GCTGAACATTGGGGATTTTG+AGG | - | chr1_1:46247582-46247601 | Msa0024110:intron | 45.0% |
| !! | TGCCTGCTGATTGAGTTTTG+CGG | - | chr1_1:46248094-46248113 | Msa0024110:intron | 45.0% |
| GGATGCAAACACCTTGTAAC+CGG | - | chr1_1:46248712-46248731 | Msa0024110:intron | 45.0% | |
| !! | TTTGACTTGAGTCTTGCCAG+AGG | - | chr1_1:46249489-46249508 | Msa0024110:intron | 45.0% |
| !!! | TGTTTTTAAAGGGGGTGCTC+AGG | - | chr1_1:46249545-46249564 | Msa0024110:intron | 45.0% |
| CTTCTGGTCAAGTAGCCTAA+TGG | - | chr1_1:46249752-46249771 | Msa0024110:intron | 45.0% | |
| ! | AGGTGAATAAGTGGGGTATC+CGG | - | chr1_1:46249794-46249813 | Msa0024110:intron | 45.0% |
| ATTATTATATGCAGGGGCCG+GGG | + | chr1_1:46249828-46249847 | None:intergenic | 45.0% | |
| CATTATTATATGCAGGGGCC+GGG | + | chr1_1:46249829-46249848 | None:intergenic | 45.0% | |
| GCATTATTATATGCAGGGGC+CGG | + | chr1_1:46249830-46249849 | None:intergenic | 45.0% | |
| TTAGCATAGCTCAGTTGGCA+GGG | + | chr1_1:46249857-46249876 | None:intergenic | 45.0% | |
| GAGCGGTCAAGATAAATAGG+AGG | - | chr1_1:46250104-46250123 | Msa0024110:CDS | 45.0% | |
| TCCAACATTCTTAGTCTGCG+CGG | + | chr1_1:46250289-46250308 | None:intergenic | 45.0% | |
| ! | TGAGCTTAGCTCAGTTGGTA+TGG | - | chr1_1:46250317-46250336 | Msa0024110:intron | 45.0% |
| ! | GAGCTTAGCTCAGTTGGTAT+GGG | - | chr1_1:46250318-46250337 | Msa0024110:intron | 45.0% |
| CCCCACCAAAAAAAGGATAC+TGG | - | chr1_1:46250383-46250402 | Msa0024110:intron | 45.0% | |
| AAGTTGCAGTAGAGGCTGTA+GGG | + | chr1_1:46250635-46250654 | None:intergenic | 45.0% | |
| AAAGTTGCAGTAGAGGCTGT+AGG | + | chr1_1:46250636-46250655 | None:intergenic | 45.0% | |
| CCCCATGGCATGAAAAGAAA+GGG | + | chr1_1:46250720-46250739 | None:intergenic | 45.0% | |
| ! | CCCTTTCTTTTCATGCCATG+GGG | - | chr1_1:46250717-46250736 | Msa0024110:intron | 45.0% |
| ACCCCATGGCATGAAAAGAA+AGG | + | chr1_1:46250721-46250740 | None:intergenic | 45.0% | |
| ! | ACTGTTCTAAATGCACCCCA+TGG | + | chr1_1:46250735-46250754 | None:intergenic | 45.0% |
| ATGAAACATGTGGACTCCTG+TGG | - | chr1_1:46250781-46250800 | Msa0024110:intron | 45.0% | |
| AGGAAAAGGAAAAGGACTGC+TGG | + | chr1_1:46250838-46250857 | None:intergenic | 45.0% | |
| TTGAAATGCCCAAAGTGTGC+AGG | - | chr1_1:46250983-46251002 | Msa0024110:intron | 45.0% | |
| TGAAATGCCCAAAGTGTGCA+GGG | - | chr1_1:46250984-46251003 | Msa0024110:intron | 45.0% | |
| ! | TGCATGTGCCGGTGTAAATA+AGG | + | chr1_1:46251046-46251065 | None:intergenic | 45.0% |
| AAAGAAAGGGTTGCATGTGC+CGG | + | chr1_1:46251057-46251076 | None:intergenic | 45.0% | |
| TGTTCTTGGATGCATGGACT+TGG | - | chr1_1:46251377-46251396 | Msa0024110:intron | 45.0% | |
| !! | TTCATTTGGGTTCTAAGCGG+TGG | + | chr1_1:46251433-46251452 | None:intergenic | 45.0% |
| TTCACTGCGCTATGGTTTCA+AGG | + | chr1_1:46251568-46251587 | None:intergenic | 45.0% | |
| !!! | CTTGAGTTTTGAGGCGAGAT+TGG | + | chr1_1:46251635-46251654 | None:intergenic | 45.0% |
| CAATCTCGCCTCAAAACTCA+AGG | - | chr1_1:46251633-46251652 | Msa0024110:intron | 45.0% | |
| GTGCCTACCTGAAATGCTTA+GGG | + | chr1_1:46251716-46251735 | None:intergenic | 45.0% | |
| TGTGCCTACCTGAAATGCTT+AGG | + | chr1_1:46251717-46251736 | None:intergenic | 45.0% | |
| ! | TTCATTTGGGTTCTCAGCAG+TGG | - | chr1_1:46251771-46251790 | Msa0024110:intron | 45.0% |
| ATTTCATCCCATTCGACACG+AGG | - | chr1_1:46251875-46251894 | Msa0024110:intron | 45.0% | |
| ACAACAACCTCGTGTCGAAT+GGG | + | chr1_1:46251885-46251904 | None:intergenic | 45.0% | |
| AACAACAACCTCGTGTCGAA+TGG | + | chr1_1:46251886-46251905 | None:intergenic | 45.0% | |
| ! | TGCTAAGAGACTTTTCGCCA+TGG | + | chr1_1:46251953-46251972 | None:intergenic | 45.0% |
| ! | CTCAATGGCATTAGGAGTAC+TGG | + | chr1_1:46252041-46252060 | None:intergenic | 45.0% |
| TGCCATTGAGTCGTGAAAGA+AGG | - | chr1_1:46252051-46252070 | Msa0024110:CDS | 45.0% | |
| GCCATTGAGTCGTGAAAGAA+GGG | - | chr1_1:46252052-46252071 | Msa0024110:CDS | 45.0% | |
| CCATTGAGTCGTGAAAGAAG+GGG | - | chr1_1:46252053-46252072 | Msa0024110:CDS | 45.0% | |
| TGAATTGTCCAAAGTGTGCG+GGG | + | chr1_1:46252136-46252155 | None:intergenic | 45.0% | |
| AGAGGAAGAGATGCTGAAGA+GGG | - | chr1_1:46252220-46252239 | Msa0024110:CDS | 45.0% | |
| TTCAGACCATGCGGTGTATT+TGG | + | chr1_1:46252400-46252419 | None:intergenic | 45.0% | |
| TGATTCATCTATGAGGGCGA+TGG | - | chr1_1:46252462-46252481 | Msa0024110:intron | 45.0% | |
| AAAGTTGCAGCAGATGCTGT+AGG | - | chr1_1:46252489-46252508 | Msa0024110:intron | 45.0% | |
| AAGTTGCAGCAGATGCTGTA+GGG | - | chr1_1:46252490-46252509 | Msa0024110:intron | 45.0% | |
| GAAATCCTCACCTTACAAGC+CGG | - | chr1_1:46252724-46252743 | Msa0024110:CDS | 45.0% | |
| ! | AGCTCGACTTGTACTTCGAT+AGG | - | chr1_1:46252863-46252882 | Msa0024110:intron | 45.0% |
| GGAGGGTAGTCAAATAGTAG+AGG | - | chr1_1:46253200-46253219 | Msa0024110:intron | 45.0% | |
| CAAATAGTAGAGGAAGGCCT+AGG | - | chr1_1:46253210-46253229 | Msa0024110:intron | 45.0% | |
| ATTAAGAGGGGTCGGCTATA+TGG | + | chr1_1:46253317-46253336 | None:intergenic | 45.0% | |
| CCAACCACTCTCAAGAATCA+AGG | + | chr1_1:46253462-46253481 | None:intergenic | 45.0% | |
| CCTTGATTCTTGAGAGTGGT+TGG | - | chr1_1:46253459-46253478 | Msa0024110:intron | 45.0% | |
| !! | TCTTGAGAGTGGTTGGCTTA+TGG | - | chr1_1:46253466-46253485 | Msa0024110:intron | 45.0% |
| GGTCGATACGATAACCTGAT+AGG | - | chr1_1:46253619-46253638 | Msa0024110:CDS | 45.0% | |
| TCGAACCAAACATCCCTATC+AGG | + | chr1_1:46253636-46253655 | None:intergenic | 45.0% | |
| ACAACAGAAGGATCAGAACC+AGG | - | chr1_1:46253717-46253736 | Msa0024110:CDS | 45.0% | |
| !! | CAGGAGTATCTATCTGATGG+AGG | + | chr1_1:46253899-46253918 | None:intergenic | 45.0% |
| !! | CAGCAGGAGTATCTATCTGA+TGG | + | chr1_1:46253902-46253921 | None:intergenic | 45.0% |
| TGACTTGATTCATCACCACG+GGG | - | chr1_1:46253943-46253962 | Msa0024110:CDS | 45.0% | |
| AGTGATTAGATACATCCCCG+TGG | + | chr1_1:46253961-46253980 | None:intergenic | 45.0% | |
| CGGGGATGTATCTAATCACT+AGG | - | chr1_1:46253961-46253980 | Msa0024110:CDS | 45.0% | |
| ACTAGGACTTCTGTCTTGGT+TGG | + | chr1_1:46254181-46254200 | None:intergenic | 45.0% | |
| GGGAATGATGTAACACTAGC+TGG | - | chr1_1:46254211-46254230 | Msa0024110:CDS | 45.0% | |
| ! | GATGATACTTGTTGGTGAGC+AGG | - | chr1_1:46254339-46254358 | Msa0024110:CDS | 45.0% |
| ACGGTTAAACCCATAAGTCC+CGG | - | chr1_1:46254459-46254478 | Msa0024110:CDS | 45.0% | |
| CTACAAACACCGGGACTTAT+GGG | + | chr1_1:46254471-46254490 | None:intergenic | 45.0% | |
| AGTAGGATGCTACAAACACC+GGG | + | chr1_1:46254480-46254499 | None:intergenic | 45.0% | |
| GGTGTTTGTAGCATCCTACT+TGG | - | chr1_1:46254480-46254499 | Msa0024110:CDS | 45.0% | |
| CATCCTACTTGGCATGTGTT+TGG | - | chr1_1:46254491-46254510 | Msa0024110:CDS | 45.0% | |
| ACTCCAAACACATGCCAAGT+AGG | + | chr1_1:46254497-46254516 | None:intergenic | 45.0% | |
| CGACAAACAATGAACAACGG+TGG | + | chr1_1:46254577-46254596 | None:intergenic | 45.0% | |
| !! | ATATAATTTGAATATATTAT+TGG | + | chr1_1:46248256-46248275 | None:intergenic | 5.0% |
| !! | ATAATAAAATTAATTACAAA+GGG | + | chr1_1:46248493-46248512 | None:intergenic | 5.0% |
| TGAGGTTAATCGGTCGAGTG+CGG | + | chr1_1:46244932-46244951 | None:intergenic | 50.0% | |
| ! | CGCGAGTTTCATCTAGGGTT+AGG | + | chr1_1:46244993-46245012 | None:intergenic | 50.0% |
| ! | GAAGGCGCGAGTTTCATCTA+GGG | + | chr1_1:46244998-46245017 | None:intergenic | 50.0% |
| !! | GTTAGGGTTTGCTGATGTGG+CGG | - | chr1_1:46245227-46245246 | Msa0024110:CDS | 50.0% |
| AAGCGAAATCGGTGCATTCG+AGG | - | chr1_1:46245448-46245467 | Msa0024110:intron | 50.0% | |
| AATCGGTGCATTCGAGGATG+CGG | - | chr1_1:46245454-46245473 | Msa0024110:intron | 50.0% | |
| ! | TTCCTTTGGCAATGGCCTTG+AGG | - | chr1_1:46245550-46245569 | Msa0024110:intron | 50.0% |
| ! | TCCTTTGGCAATGGCCTTGA+GGG | - | chr1_1:46245551-46245570 | Msa0024110:intron | 50.0% |
| ! | GCAATGGCCTTGAGGGAATT+GGG | - | chr1_1:46245558-46245577 | Msa0024110:intron | 50.0% |
| ACACTCACCCAATTCCCTCA+AGG | + | chr1_1:46245568-46245587 | None:intergenic | 50.0% | |
| TCGGGTCTCGGTGAAATCTT+TGG | - | chr1_1:46245642-46245661 | Msa0024110:intron | 50.0% | |
| CGGGTCTCGGTGAAATCTTT+GGG | - | chr1_1:46245643-46245662 | Msa0024110:intron | 50.0% | |
| GACTGCTTATGCTGTACTCG+AGG | - | chr1_1:46245809-46245828 | Msa0024110:intron | 50.0% | |
| GGCGGAGTTGTAATCTGATC+TGG | - | chr1_1:46246526-46246545 | Msa0024110:intron | 50.0% | |
| GTTCCTGGTTGGGATGCAAT+TGG | - | chr1_1:46246726-46246745 | Msa0024110:intron | 50.0% | |
| CAACCAATTGCATCCCAACC+AGG | + | chr1_1:46246732-46246751 | None:intergenic | 50.0% | |
| CTGGTTGGGATGCAATTGGT+TGG | - | chr1_1:46246730-46246749 | Msa0024110:intron | 50.0% | |
| CCAAATCCTTAATGGCGGTC+TGG | + | chr1_1:46247143-46247162 | None:intergenic | 50.0% | |
| CCAGACCGCCATTAAGGATT+TGG | - | chr1_1:46247140-46247159 | Msa0024110:intron | 50.0% | |
| CCAAATCCTTAATGGCGGTC+TGG | + | chr1_1:46247143-46247162 | None:intergenic | 50.0% | |
| CCAGACCGCCATTAAGGATT+TGG | - | chr1_1:46247140-46247159 | Msa0024110:intron | 50.0% | |
| GTGGAGAGCTCTGTTCTTTG+AGG | - | chr1_1:46247347-46247366 | Msa0024110:intron | 50.0% | |
| CGAAGGGACAACCCATCTAA+AGG | - | chr1_1:46247454-46247473 | Msa0024110:intron | 50.0% | |
| CAGGTCATCAGAATACCTGC+TGG | - | chr1_1:46247852-46247871 | Msa0024110:intron | 50.0% | |
| TCATCAGAATACCTGCTGGC+TGG | - | chr1_1:46247856-46247875 | Msa0024110:intron | 50.0% | |
| AAACTCATCAACCAGCCAGC+AGG | + | chr1_1:46247870-46247889 | None:intergenic | 50.0% | |
| TGAAAGGTCACATCACCAGC+AGG | + | chr1_1:46247993-46248012 | None:intergenic | 50.0% | |
| !! | GCCTGCTGATTGAGTTTTGC+GGG | - | chr1_1:46248095-46248114 | Msa0024110:intron | 50.0% |
| GCTGAGACAGCTGACAGAAT+TGG | - | chr1_1:46249306-46249325 | Msa0024110:intron | 50.0% | |
| ! | GGTGAATAAGTGGGGTATCC+GGG | - | chr1_1:46249795-46249814 | Msa0024110:intron | 50.0% |
| ! | GTGAATAAGTGGGGTATCCG+GGG | - | chr1_1:46249796-46249815 | Msa0024110:intron | 50.0% |
| GTTAGCATAGCTCAGTTGGC+AGG | + | chr1_1:46249858-46249877 | None:intergenic | 50.0% | |
| TCCGCGCAGACTAAGAATGT+TGG | - | chr1_1:46250285-46250304 | Msa0024110:CDS | 50.0% | |
| !!! | ATCCTTTTTTTGGTGGGGGC+CGG | + | chr1_1:46250381-46250400 | None:intergenic | 50.0% |
| AGAGGAAGAGAGGCTGAAGA+GGG | + | chr1_1:46250900-46250919 | None:intergenic | 50.0% | |
| AAGAGGAAGAGAGGCTGAAG+AGG | + | chr1_1:46250901-46250920 | None:intergenic | 50.0% | |
| ACTGTGTGCAAGAGGAAGAG+AGG | + | chr1_1:46250910-46250929 | None:intergenic | 50.0% | |
| CTTCTCTCCCTGCACACTTT+GGG | + | chr1_1:46250994-46251013 | None:intergenic | 50.0% | |
| ACTTCTCTCCCTGCACACTT+TGG | + | chr1_1:46250995-46251014 | None:intergenic | 50.0% | |
| TCACGACTCCATTGGATCCA+TGG | - | chr1_1:46251077-46251096 | Msa0024110:intron | 50.0% | |
| ! | GCTTTTCGCCATGGATCCAA+TGG | + | chr1_1:46251088-46251107 | None:intergenic | 50.0% |
| ATCCATGGCGAAAAGCCTCT+CGG | - | chr1_1:46251092-46251111 | Msa0024110:intron | 50.0% | |
| ! | GGTGAGGCATTCTTTGCTCA+GGG | + | chr1_1:46251409-46251428 | None:intergenic | 50.0% |
| !! | ATTTGGGTTCTAAGCGGTGG+CGG | + | chr1_1:46251430-46251449 | None:intergenic | 50.0% |
| ! | GAGCCCTAAGCATTTCAGGT+AGG | - | chr1_1:46251710-46251729 | Msa0024110:intron | 50.0% |
| !!! | TAGTGGGGCGTTTTTTCCTC+AGG | - | chr1_1:46251794-46251813 | Msa0024110:intron | 50.0% |
| !!! | AGTGGGGCGTTTTTTCCTCA+GGG | - | chr1_1:46251795-46251814 | Msa0024110:intron | 50.0% |
| AGCAGCAACAACTGGATCCA+TGG | - | chr1_1:46251933-46251952 | Msa0024110:intron | 50.0% | |
| GATGAGCAACGTGCACTTGT+TGG | - | chr1_1:46251997-46252016 | Msa0024110:intron | 50.0% | |
| !! | GGCATTAGGAGTACTGGTTG+AGG | + | chr1_1:46252035-46252054 | None:intergenic | 50.0% |
| CCCCTTCTTTCACGACTCAA+TGG | + | chr1_1:46252056-46252075 | None:intergenic | 50.0% | |
| AAAGAAGGGGTTGCATGTGC+TGG | - | chr1_1:46252066-46252085 | Msa0024110:CDS | 50.0% | |
| GAGAGGAAGAGATGCTGAAG+AGG | - | chr1_1:46252219-46252238 | Msa0024110:CDS | 50.0% | |
| GAAGGCAAAGGACCAACCAA+TGG | - | chr1_1:46252323-46252342 | Msa0024110:intron | 50.0% | |
| ACACCGCATGGTCTGAAAGA+AGG | - | chr1_1:46252403-46252422 | Msa0024110:intron | 50.0% | |
| CACCGCATGGTCTGAAAGAA+GGG | - | chr1_1:46252404-46252423 | Msa0024110:intron | 50.0% | |
| ACCGCATGGTCTGAAAGAAG+GGG | - | chr1_1:46252405-46252424 | Msa0024110:intron | 50.0% | |
| ACCCCTTCTTTCAGACCATG+CGG | + | chr1_1:46252409-46252428 | None:intergenic | 50.0% | |
| ACTTGGCAGACAACTCCACA+GGG | + | chr1_1:46252433-46252452 | None:intergenic | 50.0% | |
| !! | CCTAACTCTACCGGCTTGTA+AGG | + | chr1_1:46252737-46252756 | None:intergenic | 50.0% |
| CCTTACAAGCCGGTAGAGTT+AGG | - | chr1_1:46252734-46252753 | Msa0024110:CDS | 50.0% | |
| TCGGATGAGCCTAACTCTAC+CGG | + | chr1_1:46252746-46252765 | None:intergenic | 50.0% | |
| !! | CAGGTTGGTTCAATTGCTGC+TGG | - | chr1_1:46253595-46253614 | Msa0024110:CDS | 50.0% |
| ! | GTTGGTTCAATTGCTGCTGG+TGG | - | chr1_1:46253598-46253617 | Msa0024110:CDS | 50.0% |
| TCGAAGCAAGTTCCAGCAGT+TGG | - | chr1_1:46253652-46253671 | Msa0024110:CDS | 50.0% | |
| ! | TCCAGCAGTTGGTGTAAGTC+TGG | - | chr1_1:46253663-46253682 | Msa0024110:CDS | 50.0% |
| ! | CCAGCAGTTGGTGTAAGTCT+GGG | - | chr1_1:46253664-46253683 | Msa0024110:CDS | 50.0% |
| GCTCACTAGGACTTCTGTCT+TGG | + | chr1_1:46254185-46254204 | None:intergenic | 50.0% | |
| AGAGCTAGCTGGTGAACTGT+GGG | - | chr1_1:46254234-46254253 | Msa0024110:CDS | 50.0% | |
| CAACTGAAAAGCCTCGAGTC+AGG | - | chr1_1:46254382-46254401 | Msa0024110:CDS | 50.0% | |
| GCTACAAACACCGGGACTTA+TGG | + | chr1_1:46254472-46254491 | None:intergenic | 50.0% | |
| GAACTCTCCGCCGTAACACT+CGG | - | chr1_1:46244829-46244848 | Msa0024110:three_prime_UTR | 55.0% | |
| !! | CTGCTTTGAGGATGGTGGTG+AGG | + | chr1_1:46244950-46244969 | None:intergenic | 55.0% |
| ! | GGAAGGCGCGAGTTTCATCT+AGG | + | chr1_1:46244999-46245018 | None:intergenic | 55.0% |
| ATCGGTGCATTCGAGGATGC+GGG | - | chr1_1:46245455-46245474 | Msa0024110:intron | 55.0% | |
| TCCCTCAAGGCCATTGCCAA+AGG | + | chr1_1:46245555-46245574 | None:intergenic | 55.0% | |
| ! | GGCAATGGCCTTGAGGGAAT+TGG | - | chr1_1:46245557-46245576 | Msa0024110:intron | 55.0% |
| GACAGGTGTATCCAAGGCTG+TGG | + | chr1_1:46246878-46246897 | None:intergenic | 55.0% | |
| GCCCGCAAAACTCAATCAGC+AGG | + | chr1_1:46248099-46248118 | None:intergenic | 55.0% | |
| CCAACTGAGCTAAGCTCACG+AGG | + | chr1_1:46250315-46250334 | None:intergenic | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | - | chr1_1:46250312-46250331 | Msa0024110:intron | 55.0% | |
| !!! | TCCTTTTTTTGGTGGGGGCC+GGG | + | chr1_1:46250380-46250399 | None:intergenic | 55.0% |
| CTGAGCAGCAAAGTTGGGAG+CGG | + | chr1_1:46251295-46251314 | None:intergenic | 55.0% | |
| ! | CGGTGAGGCATTCTTTGCTC+AGG | + | chr1_1:46251410-46251429 | None:intergenic | 55.0% |
| TGGGTTCTCAGCAGTGGTAG+TGG | - | chr1_1:46251777-46251796 | Msa0024110:intron | 55.0% | |
| GGGTTCTCAGCAGTGGTAGT+GGG | - | chr1_1:46251778-46251797 | Msa0024110:intron | 55.0% | |
| ! | GGTTCTCAGCAGTGGTAGTG+GGG | - | chr1_1:46251779-46251798 | Msa0024110:intron | 55.0% |
| CTGGTCAGCAAAGTTGGGAG+CGG | - | chr1_1:46251909-46251928 | Msa0024110:intron | 55.0% | |
| ACTTCTCTCCCCGCACACTT+TGG | - | chr1_1:46252125-46252144 | Msa0024110:CDS | 55.0% | |
| CTGAAAGAAGGGGTTCCCTG+TGG | - | chr1_1:46252415-46252434 | Msa0024110:intron | 55.0% | |
| CACTTGGCAGACAACTCCAC+AGG | + | chr1_1:46252434-46252453 | None:intergenic | 55.0% | |
| !! | CTCTACCGGCTTGTAAGGTG+AGG | + | chr1_1:46252732-46252751 | None:intergenic | 55.0% |
| CCCAGACTTACACCAACTGC+TGG | + | chr1_1:46253667-46253686 | None:intergenic | 55.0% | |
| ACACTAGCTGGAGAGCTAGC+TGG | - | chr1_1:46254223-46254242 | Msa0024110:CDS | 55.0% | |
| GAGAGCTAGCTGGTGAACTG+TGG | - | chr1_1:46254233-46254252 | Msa0024110:CDS | 55.0% | |
| ACCCTTGCCGCCGAGTGTTA+CGG | + | chr1_1:46244842-46244861 | None:intergenic | 60.0% | |
| GGTTAATCGGTCGAGTGCGG+AGG | + | chr1_1:46244929-46244948 | None:intergenic | 60.0% | |
| AACGAGTGTGCGGCGTTGCT+TGG | - | chr1_1:46245168-46245187 | Msa0024110:CDS | 60.0% | |
| ACGAGTGTGCGGCGTTGCTT+GGG | - | chr1_1:46245169-46245188 | Msa0024110:CDS | 60.0% | |
| ! | GCTTGGGGTTTCCGCGGTTT+TGG | - | chr1_1:46245185-46245204 | Msa0024110:CDS | 60.0% |
| !! | AGGGTTTGCTGATGTGGCGG+CGG | - | chr1_1:46245230-46245249 | Msa0024110:CDS | 60.0% |
| AAGGTCCGGGGTTCGAATCC+CGG | - | chr1_1:46250359-46250378 | Msa0024110:intron | 60.0% | |
| TCCCGGCCCCCACCAAAAAA+AGG | - | chr1_1:46250376-46250395 | Msa0024110:intron | 60.0% | |
| CGAGAAGGCGGAACAACCAC+AGG | + | chr1_1:46250800-46250819 | None:intergenic | 60.0% | |
| ! | TGCCGAGAGGCTTTTCGCCA+TGG | + | chr1_1:46251097-46251116 | None:intergenic | 60.0% |
| GGGCGAGTAACGAGCACTCA+TGG | + | chr1_1:46251208-46251227 | None:intergenic | 60.0% | |
| GGAGCGGTAGCAGCAACAAC+TGG | - | chr1_1:46251925-46251944 | Msa0024110:intron | 60.0% | |
| GCTGGTGAACTGTGGGATGC+TGG | - | chr1_1:46254241-46254260 | Msa0024110:CDS | 60.0% | |
| CTCTCCGCCGTAACACTCGG+CGG | - | chr1_1:46244832-46244851 | Msa0024110:three_prime_UTR | 65.0% | |
| CTTGCCGCCGAGTGTTACGG+CGG | + | chr1_1:46244839-46244858 | None:intergenic | 65.0% | |
| GCCGTAACACTCGGCGGCAA+GGG | - | chr1_1:46244838-46244857 | Msa0024110:three_prime_UTR | 65.0% | |
| TGTGGCGGTGGCGTAGACAG+CGG | + | chr1_1:46244881-46244900 | None:intergenic | 65.0% | |
| CGAGTGTGCGGCGTTGCTTG+GGG | - | chr1_1:46245170-46245189 | Msa0024110:CDS | 65.0% | |
| GGCGTTGCTTGGGGTTTCCG+CGG | - | chr1_1:46245179-46245198 | Msa0024110:CDS | 65.0% | |
| !! | GAGGCATGGTGCCACAGCCT+TGG | - | chr1_1:46246864-46246883 | Msa0024110:intron | 65.0% |
| GGTATCCGGGGTTCGAACCC+CGG | - | chr1_1:46249808-46249827 | Msa0024110:intron | 65.0% | |
| !! | GGTTCTAAGCGGTGGCGGTG+AGG | + | chr1_1:46251425-46251444 | None:intergenic | 65.0% |
| CGCCGTAACACTCGGCGGCA+AGG | - | chr1_1:46244837-46244856 | Msa0024110:three_prime_UTR | 70.0% | |
| GCTGTCTACGCCACCGCCAC+AGG | - | chr1_1:46244880-46244899 | Msa0024110:three_prime_UTR | 70.0% | |
| ! | GGCGGCGGCGTTTTCGTGTG+AGG | - | chr1_1:46245245-46245264 | Msa0024110:CDS | 70.0% |
| GGCGGTGGCGTAGACAGCGG+AGG | + | chr1_1:46244878-46244897 | None:intergenic | 75.0% | |
| AGGGGCCGGGGTTCGAACCC+CGG | + | chr1_1:46249816-46249835 | None:intergenic | 75.0% | |
| GGGGGCCGGGATTCGAACCC+CGG | + | chr1_1:46250367-46250386 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 46244754 | 46254852 | 46244754 | ID=Msa0024110;Name=Msa0024110 |
| chr1_1 | mRNA | 46244754 | 46254852 | 46244754 | ID=Msa0024110-mRNA-1;Parent=Msa0024110;Name=Msa0024110-mRNA-1;_AED=0.07;_eAED=0.07;_QI=72|1|1|1|1|1|7|378|868 |
| chr1_1 | exon | 46244754 | 46245437 | 46244754 | ID=Msa0024110-mRNA-1:exon:13168;Parent=Msa0024110-mRNA-1 |
| chr1_1 | exon | 46245868 | 46246008 | 46245868 | ID=Msa0024110-mRNA-1:exon:13167;Parent=Msa0024110-mRNA-1 |
| chr1_1 | exon | 46250040 | 46250321 | 46250040 | ID=Msa0024110-mRNA-1:exon:13166;Parent=Msa0024110-mRNA-1 |
| chr1_1 | exon | 46251145 | 46251279 | 46251145 | ID=Msa0024110-mRNA-1:exon:13165;Parent=Msa0024110-mRNA-1 |
| chr1_1 | exon | 46252003 | 46252260 | 46252003 | ID=Msa0024110-mRNA-1:exon:13164;Parent=Msa0024110-mRNA-1 |
| chr1_1 | exon | 46252637 | 46252816 | 46252637 | ID=Msa0024110-mRNA-1:exon:13163;Parent=Msa0024110-mRNA-1 |
| chr1_1 | exon | 46253476 | 46254852 | 46253476 | ID=Msa0024110-mRNA-1:exon:13162;Parent=Msa0024110-mRNA-1 |
| chr1_1 | five_prime_UTR | 46254781 | 46254852 | 46254781 | ID=Msa0024110-mRNA-1:five_prime_utr;Parent=Msa0024110-mRNA-1 |
| chr1_1 | CDS | 46253476 | 46254780 | 46253476 | ID=Msa0024110-mRNA-1:cds;Parent=Msa0024110-mRNA-1 |
| chr1_1 | CDS | 46252637 | 46252816 | 46252637 | ID=Msa0024110-mRNA-1:cds;Parent=Msa0024110-mRNA-1 |
| chr1_1 | CDS | 46252003 | 46252260 | 46252003 | ID=Msa0024110-mRNA-1:cds;Parent=Msa0024110-mRNA-1 |
| chr1_1 | CDS | 46251145 | 46251279 | 46251145 | ID=Msa0024110-mRNA-1:cds;Parent=Msa0024110-mRNA-1 |
| chr1_1 | CDS | 46250040 | 46250321 | 46250040 | ID=Msa0024110-mRNA-1:cds;Parent=Msa0024110-mRNA-1 |
| chr1_1 | CDS | 46245868 | 46246008 | 46245868 | ID=Msa0024110-mRNA-1:cds;Parent=Msa0024110-mRNA-1 |
| chr1_1 | CDS | 46245132 | 46245437 | 46245132 | ID=Msa0024110-mRNA-1:cds;Parent=Msa0024110-mRNA-1 |
| chr1_1 | three_prime_UTR | 46244754 | 46245131 | 46244754 | ID=Msa0024110-mRNA-1:three_prime_utr;Parent=Msa0024110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
