AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0055530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0055530 MtrunA17_Chr1g0148731 86.857 175 10 2 1 174 1 163 3.70e-88 255
Msa0055530 MtrunA17_Chr2g0331271 40.678 177 83 5 6 173 11 174 3.04e-34 119
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0055530 AT4G32590.1 75.000 132 21 1 43 174 54 173 4.56e-58 179
Msa0055530 AT4G32590.3 72.727 121 21 1 43 163 54 162 3.97e-49 157
Msa0055530 AT4G32590.4 77.528 89 20 0 43 131 54 142 6.31e-37 126
Msa0055530 AT3G16250.1 41.071 168 72 5 20 173 30 184 3.88e-32 114
Msa0055530 AT4G32590.5 80.597 67 13 0 43 109 54 120 2.30e-24 92.4
Msa0055530 AT4G32590.2 75.510 49 12 0 43 91 54 102 4.88e-21 83.6

Find 75 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTTGCGCATTCTCTATTT+TGG 0.194013 1_2:-10574001 None:intergenic
GCGCAAAGCACATTGAATTA+AGG 0.264081 1_2:+10574015 Msa0055530:three_prime_UTR
TTTGGCTCTTGAATTAGATT+TGG 0.280607 1_2:-10573983 None:intergenic
GACCCATCACCCTCTGGTTT+TGG 0.288686 1_2:-10571308 None:intergenic
GAAAATAAATGGTTGGATTC+CGG 0.304867 1_2:-10571122 None:intergenic
ATGAACTCCAGCTCTATTTC+CGG 0.309865 1_2:-10571204 None:intergenic
CATTTGGTTACTATTCTTTA+CGG 0.319773 1_2:+10573918 Msa0055530:three_prime_UTR
CGCAAAGCACATTGAATTAA+GGG 0.319827 1_2:+10574016 Msa0055530:three_prime_UTR
TCCGGAGGAGAAGGAGATTC+AGG 0.327786 1_2:-10571186 None:intergenic
ATCATTACAACAATCATATA+AGG 0.333230 1_2:-10573892 None:intergenic
TCGCCGCCGGGGAAAATAAA+TGG 0.351768 1_2:-10571133 None:intergenic
AATGGTTGGATTCCGGTTAC+CGG 0.353946 1_2:-10571115 None:intergenic
AGAGGGTGATGGGTCGTTTC+CGG 0.362222 1_2:+10571316 Msa0055530:CDS
AAGTTGATGAACTGCGGTGG+AGG 0.365012 1_2:+10572176 Msa0055530:CDS
TGCAAGAAAAGTTAGAGTTT+AGG 0.368390 1_2:+10571004 Msa0055530:five_prime_UTR
CTGGCTTGTCAAACTATTGT+AGG 0.370146 1_2:+10572874 Msa0055530:CDS
GTAAACAGAAACCTCAATCT+TGG 0.374507 1_2:+10572848 Msa0055530:CDS
CAGAGGGCGCGAAGCAGAAA+AGG 0.385776 1_2:+10571047 Msa0055530:five_prime_UTR
TTACCGGCGGTGAGTGGAAC+TGG 0.390189 1_2:-10571099 None:intergenic
AAATAGAGCTGGAGTTCATT+GGG 0.393000 1_2:+10571208 Msa0055530:CDS
GAAATAGAGCTGGAGTTCAT+TGG 0.409789 1_2:+10571207 Msa0055530:CDS
TTCCACTCACCGCCGGTAAC+CGG 0.413919 1_2:+10571103 Msa0055530:CDS
TCCAAGTGAAGTCAGTTAAC+TGG 0.415358 1_2:-10570979 None:intergenic
CTTCGGTTGCAGATCATTGA+AGG 0.429966 1_2:+10572426 Msa0055530:intron
AACTGAGTTCGGTCGCCGCC+GGG 0.457166 1_2:-10571145 None:intergenic
CCAAGCCAAGTTGCACATCC+TGG 0.457293 1_2:+10573778 Msa0055530:three_prime_UTR
CAAGCCAGCCTCCAAGATTG+AGG 0.460021 1_2:-10572859 None:intergenic
GCCTGAATCTCCTTCTCCTC+CGG 0.472889 1_2:+10571185 Msa0055530:CDS
GCCACGAAACAAACTGAGTT+CGG 0.475849 1_2:-10571156 None:intergenic
CCAGGATGTGCAACTTGGCT+TGG 0.484687 1_2:-10573778 None:intergenic
GCCAGTTAACTGACTTCACT+TGG 0.486232 1_2:+10570978 Msa0055530:five_prime_UTR
GTATGTTACTTCTTCCATTG+AGG 0.486929 1_2:-10573756 None:intergenic
ACCGAACTCAGTTTGTTTCG+TGG 0.500054 1_2:+10571155 Msa0055530:CDS
AGCTCTATTTCCGGAGGAGA+AGG 0.500109 1_2:-10571195 None:intergenic
TTCTCCTCCGGAAATAGAGC+TGG 0.505143 1_2:+10571197 Msa0055530:CDS
AAACTGAGTTCGGTCGCCGC+CGG 0.506246 1_2:-10571146 None:intergenic
ATTGCTTTCACTTTATCCAC+CGG 0.506855 1_2:-10571335 None:intergenic
CGAAAATGGCTTATATTACA+AGG 0.512754 1_2:-10574056 None:intergenic
AAAATCCAGGATGTGCAACT+TGG 0.514003 1_2:-10573783 None:intergenic
CAGCCAAAACCAGAGGGTGA+TGG 0.518767 1_2:+10571305 Msa0055530:intron
AGTTGATGAACTGCGGTGGA+GGG 0.519467 1_2:+10572177 Msa0055530:CDS
TTGTTGTAATGATTGTCATT+TGG 0.523276 1_2:+10573902 Msa0055530:three_prime_UTR
TTCCGGTTACCGGCGGTGAG+TGG 0.524356 1_2:-10571105 None:intergenic
GAAACCTCAATCTTGGAGGC+TGG 0.526252 1_2:+10572855 Msa0055530:CDS
ATGCAAACTATATAAAATCC+AGG 0.528301 1_2:-10573796 None:intergenic
TGAACTAAAATATCTTAAGA+AGG 0.529764 1_2:+10572479 Msa0055530:CDS
TTGATGAACTGCGGTGGAGG+GGG 0.531421 1_2:+10572179 Msa0055530:CDS
TTGTTCAAAGGATTCCTCAA+TGG 0.532551 1_2:+10573742 Msa0055530:CDS
GCGCGAAGCAGAAAAGGAAA+TGG 0.533002 1_2:+10571053 Msa0055530:exon
GTTGATGAACTGCGGTGGAG+GGG 0.538567 1_2:+10572178 Msa0055530:CDS
AACAGAAACCTCAATCTTGG+AGG 0.546688 1_2:+10572851 Msa0055530:CDS
CACACACAAGACACAACAGA+GGG 0.547327 1_2:+10571031 Msa0055530:five_prime_UTR
AGCCAAAACCAGAGGGTGAT+GGG 0.553792 1_2:+10571306 Msa0055530:intron
TGGCTTGTCAAACTATTGTA+GGG 0.560652 1_2:+10572875 Msa0055530:CDS
GTTGCAGATCATTGAAGGAA+AGG 0.566306 1_2:+10572431 Msa0055530:intron
GGAAACGACCCATCACCCTC+TGG 0.569559 1_2:-10571314 None:intergenic
CGCCGGGGAAAATAAATGGT+TGG 0.580484 1_2:-10571129 None:intergenic
TAAGCGGAGAGAAGCTGATG+AGG 0.586456 1_2:+10571357 Msa0055530:CDS
GGGTGATGGGTCGTTTCCGG+TGG 0.591158 1_2:+10571319 Msa0055530:CDS
GTAGGGAACAAAGAAAACTC+TGG 0.594992 1_2:+10572892 Msa0055530:CDS
ACTGAGTTCGGTCGCCGCCG+GGG 0.605244 1_2:-10571144 None:intergenic
ACACCAGTTCCACTCACCGC+CGG 0.614691 1_2:+10571096 Msa0055530:CDS
CTGCGGAACTTGCATAGTCG+AGG 0.615080 1_2:+10572205 Msa0055530:CDS
GAACAAAGAAAACTCTGGCA+AGG 0.616661 1_2:+10572897 Msa0055530:CDS
ACACACACAAGACACAACAG+AGG 0.631902 1_2:+10571030 Msa0055530:five_prime_UTR
GGGAAGTTGATGAACTGCGG+TGG 0.636301 1_2:+10572173 Msa0055530:CDS
TTGATTGCAGCCAAAACCAG+AGG 0.640341 1_2:+10571298 Msa0055530:intron
TGATTGCAGCCAAAACCAGA+GGG 0.640990 1_2:+10571299 Msa0055530:intron
AACTCCAGCTCTATTTCCGG+AGG 0.644295 1_2:-10571201 None:intergenic
GGTTGGATTCCGGTTACCGG+CGG 0.656174 1_2:-10571112 None:intergenic
GCTGATGAGGAGCATCATGT+CGG 0.664064 1_2:+10571370 Msa0055530:CDS
GATAAAGTGAAAGCAATAAG+CGG 0.697309 1_2:+10571341 Msa0055530:CDS
AATAGAGCTGGAGTTCATTG+GGG 0.704244 1_2:+10571209 Msa0055530:CDS
CAGGGGAAGTTGATGAACTG+CGG 0.716036 1_2:+10572170 Msa0055530:intron
TGGTAGGATACATACATACG+TGG 0.737259 1_2:-10571414 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTTCTTCTATAAAAAAA+AGG + chr1_2:10571728-10571747 Msa0055530:intron 10.0%
!!! TTTTATATCTTCTAAAAAAA+TGG - chr1_2:10572074-10572093 None:intergenic 10.0%
!!! ATTTTTTTAGAAGATATAAA+AGG + chr1_2:10572073-10572092 Msa0055530:intron 10.0%
!!! GAATAATTTTAGATATTTTT+TGG + chr1_2:10572350-10572369 Msa0055530:intron 10.0%
!! TCTAATAATAACCATAAAAA+TGG - chr1_2:10572268-10572287 None:intergenic 15.0%
!! ATTAGTTAATTTCAAAATCT+TGG - chr1_2:10572809-10572828 None:intergenic 15.0%
!! ATATATTATACTTTCTATGA+TGG + chr1_2:10573707-10573726 Msa0055530:intron 15.0%
!! TATATTATACTTTCTATGAT+GGG + chr1_2:10573708-10573727 Msa0055530:intron 15.0%
!! TTTACTATGAATGTTAGTAA+GGG - chr1_2:10571668-10571687 None:intergenic 20.0%
!!! TTTTACTATGAATGTTAGTA+AGG - chr1_2:10571669-10571688 None:intergenic 20.0%
!! TCAATTAATAACAATGAGTT+GGG - chr1_2:10571708-10571727 None:intergenic 20.0%
!! TTCAATTAATAACAATGAGT+TGG - chr1_2:10571709-10571728 None:intergenic 20.0%
!! TTTAAATATGAACGTTACAT+TGG + chr1_2:10571837-10571856 Msa0055530:intron 20.0%
!! GATTCTTCTTACTAATAATT+TGG + chr1_2:10571998-10572017 Msa0055530:intron 20.0%
!!! TAATTTTAACTGTTACAACA+GGG + chr1_2:10572152-10572171 Msa0055530:intron 20.0%
!! TGAACTAAAATATCTTAAGA+AGG + chr1_2:10572479-10572498 Msa0055530:CDS 20.0%
!!! ATTTTAACACATTGTTTTCA+AGG + chr1_2:10572588-10572607 Msa0055530:intron 20.0%
!! AACAACTTTCAGTATATATA+TGG + chr1_2:10573361-10573380 Msa0055530:intron 20.0%
!! AAATAGACTTAATTCATAGA+AGG - chr1_2:10573486-10573505 None:intergenic 20.0%
!! TTAATTATCATATCATCCAA+AGG - chr1_2:10573515-10573534 None:intergenic 20.0%
!! ATGATATGATAATTAAAGCA+TGG + chr1_2:10573519-10573538 Msa0055530:intron 20.0%
!!! ATTCTAAAATTAATCAAGAC+TGG + chr1_2:10573652-10573671 Msa0055530:intron 20.0%
!! ATCATTACAACAATCATATA+AGG - chr1_2:10573895-10573914 None:intergenic 20.0%
!! AAAGAGAAAAAGTACATGTA+TGG - chr1_2:10571459-10571478 None:intergenic 25.0%
! ACTAAAGAGTTCATTAAAGA+TGG + chr1_2:10571936-10571955 Msa0055530:intron 25.0%
!! TAGGTTTTCAGATTAATCAT+CGG + chr1_2:10571964-10571983 Msa0055530:intron 25.0%
!! TCTAAAAAAATGGATCCTTT+TGG - chr1_2:10572064-10572083 None:intergenic 25.0%
!!! CTAATTTTAACTGTTACAAC+AGG + chr1_2:10572151-10572170 Msa0055530:intron 25.0%
!!! AATTTTAACTGTTACAACAG+GGG + chr1_2:10572153-10572172 Msa0055530:intron 25.0%
!!! ACTAACATGATCCATTTTTA+TGG + chr1_2:10572254-10572273 Msa0055530:intron 25.0%
!! GCTAAGCATTTTACTATTTT+CGG - chr1_2:10572553-10572572 None:intergenic 25.0%
! TAAAATGCTTAGCACATTAT+TGG + chr1_2:10572560-10572579 Msa0055530:intron 25.0%
! GGTGAATACTTATATCAAAT+AGG - chr1_2:10572694-10572713 None:intergenic 25.0%
! AGGTTAAAAGAGTTAAAGAA+CGG - chr1_2:10572715-10572734 None:intergenic 25.0%
!!! TTAACTAATGTTTTGAGCTT+TGG + chr1_2:10572820-10572839 Msa0055530:intron 25.0%
!! TCAACTAAGAACAAATTTTG+AGG + chr1_2:10573141-10573160 Msa0055530:intron 25.0%
!! CAACTAAGAACAAATTTTGA+GGG + chr1_2:10573142-10573161 Msa0055530:intron 25.0%
! AGAACATTGAAACTAGAATA+AGG + chr1_2:10573224-10573243 Msa0055530:intron 25.0%
!! AAACTTAGTAAAAAGTGTAC+CGG - chr1_2:10573314-10573333 None:intergenic 25.0%
!!! ACTTTTTACTAAGTTTGTTC+CGG + chr1_2:10573318-10573337 Msa0055530:intron 25.0%
! CTATGAAACTTGATGAAATA+TGG - chr1_2:10573405-10573424 None:intergenic 25.0%
! ATTAAGTACTATAGTGCTAA+TGG + chr1_2:10573680-10573699 Msa0055530:intron 25.0%
! ATGCAAACTATATAAAATCC+AGG - chr1_2:10573799-10573818 None:intergenic 25.0%
! TTGTTGTAATGATTGTCATT+TGG + chr1_2:10573902-10573921 Msa0055530:three_prime_UTR 25.0%
! CATTTGGTTACTATTCTTTA+CGG + chr1_2:10573918-10573937 Msa0055530:three_prime_UTR 25.0%
!!! CTTGTAATATAAGCCATTTT+CGG + chr1_2:10574057-10574076 Msa0055530:three_prime_UTR 25.0%
TGCAAGAAAAGTTAGAGTTT+AGG + chr1_2:10571004-10571023 Msa0055530:five_prime_UTR 30.0%
GAAAATAAATGGTTGGATTC+CGG - chr1_2:10571125-10571144 None:intergenic 30.0%
GATAAAGTGAAAGCAATAAG+CGG + chr1_2:10571341-10571360 Msa0055530:CDS 30.0%
AAAGTACATGTATGGTTGAT+TGG - chr1_2:10571451-10571470 None:intergenic 30.0%
TATCTGAGTTCAGTTTCATT+CGG - chr1_2:10571864-10571883 None:intergenic 30.0%
GAACTCAGATATCTTAATCA+AGG + chr1_2:10571873-10571892 Msa0055530:intron 30.0%
!!! ATCCTTTTGGTTCTTGATAT+TGG - chr1_2:10572051-10572070 None:intergenic 30.0%
AATCATGTAGTAGCAATTAG+AGG - chr1_2:10572406-10572425 None:intergenic 30.0%
ATTGCTACTACATGATTCTT+CGG + chr1_2:10572409-10572428 Msa0055530:intron 30.0%
! GAAAGGAACTTTTGAATGAA+AGG + chr1_2:10572448-10572467 Msa0055530:CDS 30.0%
GATATTATAACACTTCCCAT+TGG - chr1_2:10572622-10572641 None:intergenic 30.0%
!! TTTCAACTGATTTGAGCTAA+AGG - chr1_2:10572735-10572754 None:intergenic 30.0%
ATTGTTCCTTTCATATTGTG+AGG + chr1_2:10572773-10572792 Msa0055530:intron 30.0%
TTGTTCCTTTCATATTGTGA+GGG + chr1_2:10572774-10572793 Msa0055530:intron 30.0%
CTTATATGTAACTATCACTC+CGG - chr1_2:10573017-10573036 None:intergenic 30.0%
CTCACATTATTGAGAATTGA+AGG + chr1_2:10573069-10573088 Msa0055530:intron 30.0%
TGAAGGTAGTTTATATACAC+CGG + chr1_2:10573086-10573105 Msa0055530:intron 30.0%
AAGTCTATTTACTTGACCTT+TGG + chr1_2:10573496-10573515 Msa0055530:intron 30.0%
!!! TAGTCACTTTTGTTTGCATT+AGG - chr1_2:10573579-10573598 None:intergenic 30.0%
AATGCAAACAAAAGTGACTA+CGG + chr1_2:10573579-10573598 Msa0055530:intron 30.0%
TTGAAGAGAACCATACAAAT+TGG - chr1_2:10573613-10573632 None:intergenic 30.0%
!! TTTGGCTCTTGAATTAGATT+TGG - chr1_2:10573986-10574005 None:intergenic 30.0%
CGAAAATGGCTTATATTACA+AGG - chr1_2:10574059-10574078 None:intergenic 30.0%
!! ATCCAACCATTTATTTTCCC+CGG + chr1_2:10571127-10571146 Msa0055530:CDS 35.0%
AAATAGAGCTGGAGTTCATT+GGG + chr1_2:10571208-10571227 Msa0055530:CDS 35.0%
ATTGCTTTCACTTTATCCAC+CGG - chr1_2:10571338-10571357 None:intergenic 35.0%
ATTGGAATTAAGCATGTGGT+AGG - chr1_2:10571433-10571452 None:intergenic 35.0%
GTTGATTGGAATTAAGCATG+TGG - chr1_2:10571437-10571456 None:intergenic 35.0%
! GGTCTAAGATTAGATTCTCA+TGG + chr1_2:10571894-10571913 Msa0055530:intron 35.0%
TTCTCATGGATGAGAAAATG+TGG + chr1_2:10571908-10571927 Msa0055530:intron 35.0%
ATGGATGAGAAAATGTGGTT+GGG + chr1_2:10571913-10571932 Msa0055530:intron 35.0%
TTCATTAAAGATGGTCAGCT+AGG + chr1_2:10571945-10571964 Msa0055530:intron 35.0%
TGCCAATATCAAGAACCAAA+AGG + chr1_2:10572046-10572065 Msa0055530:intron 35.0%
TCAGTATGACTATGTTCTCT+TGG + chr1_2:10572300-10572319 Msa0055530:intron 35.0%
!! ACATTGTTTTCAAGGTTCCT+AGG + chr1_2:10572596-10572615 Msa0055530:intron 35.0%
GTAAACAGAAACCTCAATCT+TGG + chr1_2:10572848-10572867 Msa0055530:CDS 35.0%
! TGGCTTGTCAAACTATTGTA+GGG + chr1_2:10572875-10572894 Msa0055530:CDS 35.0%
GCTATATCTCATGTTTAGTG+TGG + chr1_2:10572980-10572999 Msa0055530:intron 35.0%
GGCTTACACAATACTCAATA+CGG + chr1_2:10573163-10573182 Msa0055530:intron 35.0%
GGAATCTTCTCCAATTTGTA+TGG + chr1_2:10573600-10573619 Msa0055530:intron 35.0%
!!! ACTTTCTATGATGGGCTTTT+AGG + chr1_2:10573716-10573735 Msa0055530:intron 35.0%
!!! GCTTTTAGGTTGTTGTTCAA+AGG + chr1_2:10573730-10573749 Msa0055530:intron 35.0%
TTGTTCAAAGGATTCCTCAA+TGG + chr1_2:10573742-10573761 Msa0055530:CDS 35.0%
! GTATGTTACTTCTTCCATTG+AGG - chr1_2:10573759-10573778 None:intergenic 35.0%
CGCAAAGCACATTGAATTAA+GGG + chr1_2:10574016-10574035 Msa0055530:three_prime_UTR 35.0%
TCCAAGTGAAGTCAGTTAAC+TGG - chr1_2:10570982-10571001 None:intergenic 40.0%
ATGAACTCCAGCTCTATTTC+CGG - chr1_2:10571207-10571226 None:intergenic 40.0%
GAAATAGAGCTGGAGTTCAT+TGG + chr1_2:10571207-10571226 Msa0055530:CDS 40.0%
AATAGAGCTGGAGTTCATTG+GGG + chr1_2:10571209-10571228 Msa0055530:CDS 40.0%
TGGTAGGATACATACATACG+TGG - chr1_2:10571417-10571436 None:intergenic 40.0%
CTTAAGAGATTAATCGCGAG+TGG - chr1_2:10571552-10571571 None:intergenic 40.0%
CATGGATGAGAAAATGTGGT+TGG + chr1_2:10571912-10571931 Msa0055530:intron 40.0%
GTTGCAGATCATTGAAGGAA+AGG + chr1_2:10572431-10572450 Msa0055530:intron 40.0%
TTCCTTTCATATTGTGAGGG+TGG + chr1_2:10572777-10572796 Msa0055530:intron 40.0%
TACCACCCTCACAATATGAA+AGG - chr1_2:10572782-10572801 None:intergenic 40.0%
AACAGAAACCTCAATCTTGG+AGG + chr1_2:10572851-10572870 Msa0055530:CDS 40.0%
! CTGGCTTGTCAAACTATTGT+AGG + chr1_2:10572874-10572893 Msa0055530:CDS 40.0%
GTAGGGAACAAAGAAAACTC+TGG + chr1_2:10572892-10572911 Msa0055530:CDS 40.0%
GAACAAAGAAAACTCTGGCA+AGG + chr1_2:10572897-10572916 Msa0055530:CDS 40.0%
CATGTTTAGTGTGGCAAATG+TGG + chr1_2:10572989-10573008 Msa0055530:intron 40.0%
! GAGTAATGAGTTGAAGAGAC+CGG - chr1_2:10573108-10573127 None:intergenic 40.0%
CGGACAATACCTTAGAAAAG+TGG + chr1_2:10573183-10573202 Msa0055530:intron 40.0%
!! TCTGAGACACCACTTTTCTA+AGG - chr1_2:10573195-10573214 None:intergenic 40.0%
AAAGTGGTGTCTCAGATTTG+AGG + chr1_2:10573199-10573218 Msa0055530:intron 40.0%
! TTTTAGCCCCATAGGCTAAA+GGG + chr1_2:10573277-10573296 Msa0055530:intron 40.0%
! TTACTAAGTTTGTTCCGGTG+TGG + chr1_2:10573323-10573342 Msa0055530:intron 40.0%
AAAATCCAGGATGTGCAACT+TGG - chr1_2:10573786-10573805 None:intergenic 40.0%
! GCTTTGCGCATTCTCTATTT+TGG - chr1_2:10574004-10574023 None:intergenic 40.0%
GCGCAAAGCACATTGAATTA+AGG + chr1_2:10574015-10574034 Msa0055530:three_prime_UTR 40.0%
! GCCAGTTAACTGACTTCACT+TGG + chr1_2:10570978-10570997 Msa0055530:five_prime_UTR 45.0%
ACACACACAAGACACAACAG+AGG + chr1_2:10571030-10571049 Msa0055530:five_prime_UTR 45.0%
CACACACAAGACACAACAGA+GGG + chr1_2:10571031-10571050 Msa0055530:five_prime_UTR 45.0%
AATGGTTGGATTCCGGTTAC+CGG - chr1_2:10571118-10571137 None:intergenic 45.0%
!! CAACCATTTATTTTCCCCGG+CGG + chr1_2:10571130-10571149 Msa0055530:CDS 45.0%
! ACCGAACTCAGTTTGTTTCG+TGG + chr1_2:10571155-10571174 Msa0055530:CDS 45.0%
GCCACGAAACAAACTGAGTT+CGG - chr1_2:10571159-10571178 None:intergenic 45.0%
TTGATTGCAGCCAAAACCAG+AGG + chr1_2:10571298-10571317 Msa0055530:intron 45.0%
TGATTGCAGCCAAAACCAGA+GGG + chr1_2:10571299-10571318 Msa0055530:intron 45.0%
CTTCGGTTGCAGATCATTGA+AGG + chr1_2:10572426-10572445 Msa0055530:intron 45.0%
TTTCAAGGTTCCTAGGCCAA+TGG + chr1_2:10572603-10572622 Msa0055530:intron 45.0%
TTCAAGGTTCCTAGGCCAAT+GGG + chr1_2:10572604-10572623 Msa0055530:intron 45.0%
! ATAACACTTCCCATTGGCCT+AGG - chr1_2:10572616-10572635 None:intergenic 45.0%
CTTTAGCCTATGGGGCTAAA+AGG - chr1_2:10573278-10573297 None:intergenic 45.0%
! CTTTTAGCCCCATAGGCTAA+AGG + chr1_2:10573276-10573295 Msa0055530:intron 45.0%
ATAGCCTCCCTTTAGCCTAT+GGG - chr1_2:10573287-10573306 None:intergenic 45.0%
AATAGCCTCCCTTTAGCCTA+TGG - chr1_2:10573288-10573307 None:intergenic 45.0%
CTAAAGGGAGGCTATTGTTC+CGG + chr1_2:10573292-10573311 Msa0055530:intron 45.0%
TAGGGGGTGAAAACCGAAAA+TGG - chr1_2:10574073-10574092 None:intergenic 45.0%
!!! AATTATTTCTTAAATAAATT+CGG + chr1_2:10571517-10571536 Msa0055530:intron 5.0%
GCGCGAAGCAGAAAAGGAAA+TGG + chr1_2:10571053-10571072 Msa0055530:exon 50.0%
CGCCGGGGAAAATAAATGGT+TGG - chr1_2:10571132-10571151 None:intergenic 50.0%
AGCTCTATTTCCGGAGGAGA+AGG - chr1_2:10571198-10571217 None:intergenic 50.0%
TTCTCCTCCGGAAATAGAGC+TGG + chr1_2:10571197-10571216 Msa0055530:CDS 50.0%
AACTCCAGCTCTATTTCCGG+AGG - chr1_2:10571204-10571223 None:intergenic 50.0%
AGCCAAAACCAGAGGGTGAT+GGG + chr1_2:10571306-10571325 Msa0055530:intron 50.0%
TAAGCGGAGAGAAGCTGATG+AGG + chr1_2:10571357-10571376 Msa0055530:CDS 50.0%
!! GCTGATGAGGAGCATCATGT+CGG + chr1_2:10571370-10571389 Msa0055530:CDS 50.0%
!! CAGGGGAAGTTGATGAACTG+CGG + chr1_2:10572170-10572189 Msa0055530:intron 50.0%
!! AAGTTGATGAACTGCGGTGG+AGG + chr1_2:10572176-10572195 Msa0055530:CDS 50.0%
!! AGTTGATGAACTGCGGTGGA+GGG + chr1_2:10572177-10572196 Msa0055530:CDS 50.0%
GAAACCTCAATCTTGGAGGC+TGG + chr1_2:10572855-10572874 Msa0055530:CDS 50.0%
TAGTGTGGCAAATGTGGTGC+CGG + chr1_2:10572995-10573014 Msa0055530:intron 50.0%
! GATAGGCCTTTTAGCCCCAT+AGG + chr1_2:10573269-10573288 Msa0055530:intron 50.0%
TAGCCTCCCTTTAGCCTATG+GGG - chr1_2:10573286-10573305 None:intergenic 50.0%
! CTAAGTTTGTTCCGGTGTGG+CGG + chr1_2:10573326-10573345 Msa0055530:intron 50.0%
TCGCCGCCGGGGAAAATAAA+TGG - chr1_2:10571136-10571155 None:intergenic 55.0%
GCCTGAATCTCCTTCTCCTC+CGG + chr1_2:10571185-10571204 Msa0055530:CDS 55.0%
TCCGGAGGAGAAGGAGATTC+AGG - chr1_2:10571189-10571208 None:intergenic 55.0%
CAGCCAAAACCAGAGGGTGA+TGG + chr1_2:10571305-10571324 Msa0055530:intron 55.0%
!! GACCCATCACCCTCTGGTTT+TGG - chr1_2:10571311-10571330 None:intergenic 55.0%
!! AGAGGGTGATGGGTCGTTTC+CGG + chr1_2:10571316-10571335 Msa0055530:CDS 55.0%
!! GGGAAGTTGATGAACTGCGG+TGG + chr1_2:10572173-10572192 Msa0055530:CDS 55.0%
! GTTGATGAACTGCGGTGGAG+GGG + chr1_2:10572178-10572197 Msa0055530:CDS 55.0%
TTGATGAACTGCGGTGGAGG+GGG + chr1_2:10572179-10572198 Msa0055530:CDS 55.0%
CTGCGGAACTTGCATAGTCG+AGG + chr1_2:10572205-10572224 Msa0055530:CDS 55.0%
CAAGCCAGCCTCCAAGATTG+AGG - chr1_2:10572862-10572881 None:intergenic 55.0%
AGGACATAAGCCACACGCGA+TGG + chr1_2:10573244-10573263 Msa0055530:intron 55.0%
TAGCCCCATAGGCTAAAGGG+AGG + chr1_2:10573280-10573299 Msa0055530:intron 55.0%
CCAGGATGTGCAACTTGGCT+TGG - chr1_2:10573781-10573800 None:intergenic 55.0%
CCAAGCCAAGTTGCACATCC+TGG + chr1_2:10573778-10573797 Msa0055530:three_prime_UTR 55.0%
! CAGAGGGCGCGAAGCAGAAA+AGG + chr1_2:10571047-10571066 Msa0055530:five_prime_UTR 60.0%
ACACCAGTTCCACTCACCGC+CGG + chr1_2:10571096-10571115 Msa0055530:CDS 60.0%
TTACCGGCGGTGAGTGGAAC+TGG - chr1_2:10571102-10571121 None:intergenic 60.0%
TTCCACTCACCGCCGGTAAC+CGG + chr1_2:10571103-10571122 Msa0055530:CDS 60.0%
GGTTGGATTCCGGTTACCGG+CGG - chr1_2:10571115-10571134 None:intergenic 60.0%
AAACTGAGTTCGGTCGCCGC+CGG - chr1_2:10571149-10571168 None:intergenic 60.0%
GGAAACGACCCATCACCCTC+TGG - chr1_2:10571317-10571336 None:intergenic 60.0%
AGCCACACGCGATGGTCGAT+AGG + chr1_2:10573252-10573271 Msa0055530:intron 60.0%
TGAACTCGAGTCCGCCACAC+CGG - chr1_2:10573340-10573359 None:intergenic 60.0%
TTCCGGTTACCGGCGGTGAG+TGG - chr1_2:10571108-10571127 None:intergenic 65.0%
AACTGAGTTCGGTCGCCGCC+GGG - chr1_2:10571148-10571167 None:intergenic 65.0%
!! GGGTGATGGGTCGTTTCCGG+TGG + chr1_2:10571319-10571338 Msa0055530:CDS 65.0%
GGCCTATCGACCATCGCGTG+TGG - chr1_2:10573257-10573276 None:intergenic 65.0%
ACTGAGTTCGGTCGCCGCCG+GGG - chr1_2:10571147-10571166 None:intergenic 70.0%
TGCGGTGGAGGGGGTAGCTG+CGG + chr1_2:10572188-10572207 Msa0055530:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 10570932 10574102 10570932 ID=Msa0055530;Name=Msa0055530
chr1_2 mRNA 10570932 10574102 10570932 ID=Msa0055530-mRNA-1;Parent=Msa0055530;Name=Msa0055530-mRNA-1;_AED=0.12;_eAED=0.12;_QI=140|0.8|0.66|1|0.6|0.66|6|329|174
chr1_2 exon 10570932 10571230 10570932 ID=Msa0055530-mRNA-1:exon:4006;Parent=Msa0055530-mRNA-1
chr1_2 exon 10571308 10571421 10571308 ID=Msa0055530-mRNA-1:exon:4007;Parent=Msa0055530-mRNA-1
chr1_2 exon 10572173 10572226 10572173 ID=Msa0055530-mRNA-1:exon:4008;Parent=Msa0055530-mRNA-1
chr1_2 exon 10572438 10572517 10572438 ID=Msa0055530-mRNA-1:exon:4009;Parent=Msa0055530-mRNA-1
chr1_2 exon 10572837 10572918 10572837 ID=Msa0055530-mRNA-1:exon:4010;Parent=Msa0055530-mRNA-1
chr1_2 exon 10573738 10574102 10573738 ID=Msa0055530-mRNA-1:exon:4011;Parent=Msa0055530-mRNA-1
chr1_2 five_prime_UTR 10570932 10571071 10570932 ID=Msa0055530-mRNA-1:five_prime_utr;Parent=Msa0055530-mRNA-1
chr1_2 CDS 10571072 10571230 10571072 ID=Msa0055530-mRNA-1:cds;Parent=Msa0055530-mRNA-1
chr1_2 CDS 10571308 10571421 10571308 ID=Msa0055530-mRNA-1:cds;Parent=Msa0055530-mRNA-1
chr1_2 CDS 10572173 10572226 10572173 ID=Msa0055530-mRNA-1:cds;Parent=Msa0055530-mRNA-1
chr1_2 CDS 10572438 10572517 10572438 ID=Msa0055530-mRNA-1:cds;Parent=Msa0055530-mRNA-1
chr1_2 CDS 10572837 10572918 10572837 ID=Msa0055530-mRNA-1:cds;Parent=Msa0055530-mRNA-1
chr1_2 CDS 10573738 10573773 10573738 ID=Msa0055530-mRNA-1:cds;Parent=Msa0055530-mRNA-1
chr1_2 three_prime_UTR 10573774 10574102 10573774 ID=Msa0055530-mRNA-1:three_prime_utr;Parent=Msa0055530-mRNA-1
Gene Sequence

>Msa0055530

ATGGCTTCTATGAACAATATATTCACACCAGTTCCACTCACCGCCGGTAACCGGAATCCAACCATTTATTTTCCCCGGCGGCGACCGAACTCAGTTTGTTTCGTGGCAAATTCGCCTGAATCTCCTTCTCCTCCGGAAATAGAGCTGGAGTTCATTGGGCCAAAACCAGAGGGTGATGGGTCGTTTCCGGTGGATAAAGTGAAAGCAATAAGCGGAGAGAAGCTGATGAGGAGCATCATGTCGGATAATAAGATTGAGCTTTATGCCACGTATGGGAAGTTGATGAACTGCGGTGGAGGGGGTAGCTGCGGAACTTGCATAGTCGAGATCATTGAAGGAAAGGAACTTTTGAATGAAAGGACAAATACTGAACTAAAATATCTTAAGAAGGCATGTTCTCTAACTTTCTTTGGCATTTGTAAACAGAAACCTCAATCTTGGAGGCTGGCTTGTCAAACTATTGTAGGGAACAAAGAAAACTCTGGCAAGGTTGTTGTTCAAAGGATTCCTCAATGGAAGAAGTAA

Protein sequence

>Msa0055530

MASMNNIFTPVPLTAGNRNPTIYFPRRRPNSVCFVANSPESPSPPEIELEFIGPKPEGDGSFPVDKVKAISGEKLMRSIMSDNKIELYATYGKLMNCGGGGSCGTCIVEIIEGKELLNERTNTELKYLKKACSLTFFGICKQKPQSWRLACQTIVGNKENSGKVVVQRIPQWKK*