AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0078080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0078080 MtrunA17_Chr1g0188291 98.160 326 6 0 1 326 1 326 0.0 656
Msa0078080 MtrunA17_Chr2g0329451 66.772 316 105 0 8 323 14 329 3.82e-159 447
Msa0078080 MtrunA17_Chr4g0033631 66.246 317 107 0 8 324 15 331 5.03e-156 440
Msa0078080 MtrunA17_Chr6g0474331 64.873 316 109 2 8 321 28 343 2.95e-154 436
Msa0078080 MtrunA17_Chr1g0204101 63.175 315 114 2 8 320 23 337 4.09e-148 420
Msa0078080 MtrunA17_Chr5g0434971 66.026 312 105 1 5 315 64 375 2.72e-145 415
Msa0078080 MtrunA17_Chr1g0183241 50.625 320 135 4 8 325 110 408 1.81e-105 314
Msa0078080 MtrunA17_Chr1g0171921 48.348 333 145 6 8 326 183 502 3.38e-97 297
Msa0078080 MtrunA17_Chr1g0177771 49.363 314 139 5 8 317 253 550 3.28e-96 295
Msa0078080 MtrunA17_Chr1g0183661 50.545 275 122 4 34 306 14 276 2.30e-92 277
Msa0078080 MtrunA17_Chr1g0177321 46.519 316 140 5 8 319 179 469 6.92e-89 274
Msa0078080 MtrunA17_Chr7g0246421 59.116 181 72 2 135 313 5 185 4.59e-72 221
Msa0078080 MtrunA17_Chr1g0176221 45.339 236 100 2 85 320 1 207 1.59e-66 207
Msa0078080 MtrunA17_Chr5g0419371 31.897 348 198 5 7 318 209 553 4.85e-53 183
Msa0078080 MtrunA17_Chr4g0008441 34.906 318 174 4 34 318 133 450 1.11e-51 177
Msa0078080 MtrunA17_Chr7g0246411 57.143 133 55 1 5 135 38 170 4.80e-48 159
Msa0078080 MtrunA17_Chr4g0020911 53.030 132 60 1 134 263 58 189 1.86e-43 148
Msa0078080 MtrunA17_Chr1g0184491 24.646 353 224 9 3 324 70 411 2.09e-14 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0078080 AT4G10260.1 78.233 317 69 0 7 323 5 321 0.0 523
Msa0078080 AT3G59480.1 66.875 320 106 0 2 321 4 323 1.56e-161 454
Msa0078080 AT1G06020.1 67.296 318 104 0 8 325 10 327 1.11e-159 450
Msa0078080 AT1G06030.1 67.188 320 105 0 2 321 5 324 6.63e-159 447
Msa0078080 AT2G31390.1 66.879 314 104 0 8 321 9 322 1.92e-158 446
Msa0078080 AT1G66430.1 63.950 319 114 1 2 319 59 377 1.97e-151 431
Msa0078080 AT5G51830.2 63.863 321 114 2 8 326 23 343 1.71e-150 426
Msa0078080 AT5G51830.1 63.863 321 114 2 8 326 23 343 1.71e-150 426
Msa0078080 AT3G54090.1 34.072 361 190 6 7 320 102 461 7.44e-56 188
Msa0078080 AT1G50390.1 52.071 169 52 1 153 321 1 140 1.94e-52 170
Msa0078080 AT1G69200.1 31.307 329 190 4 7 300 205 532 5.53e-47 167
Msa0078080 AT1G06730.1 24.917 301 205 6 40 327 132 424 3.42e-12 67.4
Msa0078080 AT1G17160.1 23.973 292 192 7 39 321 105 375 6.32e-11 63.2

Find 137 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCAGTGGTACCTTAAATT+TGG 0.118031 1_2:+55371539 None:intergenic
TGTCTCACAAATATAGTTTA+AGG 0.131310 1_2:+55371177 None:intergenic
GTTAAAGTCTCTCTCAATTT+TGG 0.146753 1_2:+55368891 None:intergenic
GCAAGAGACCCTTCTATATT+TGG 0.155547 1_2:-55369054 Msa0078080:CDS
CTAAGCATTCAATCATAAAT+TGG 0.249083 1_2:+55371345 None:intergenic
ACCTTCTCTAGCAGCTTTCA+TGG 0.275867 1_2:+55370004 None:intergenic
CAAGAGACCCTTCTATATTT+GGG 0.290405 1_2:-55369053 Msa0078080:CDS
GGCAGCATTGCCACCAAGTT+TGG 0.291331 1_2:+55370940 None:intergenic
CTTTGATTAATTGAATAAAT+AGG 0.291700 1_2:-55371741 Msa0078080:five_prime_UTR
TTGTATGAAGGTCTTATTAA+AGG 0.295536 1_2:+55368693 None:intergenic
ATGTTTGAAATATAATTATA+AGG 0.304077 1_2:+55371372 None:intergenic
CAAGTACAACTCATCCCTTT+TGG 0.324093 1_2:+55371840 None:intergenic
TCCAGTGGTACCTTAAATTT+GGG 0.327418 1_2:+55371540 None:intergenic
TAACTTGGTAGGCTTGGATT+TGG 0.340201 1_2:+55372632 None:intergenic
CAGTGTGAAACCCAAATTTA+AGG 0.348960 1_2:-55371550 Msa0078080:five_prime_UTR
TAATAACAAACACAAATATA+TGG 0.356452 1_2:-55371251 Msa0078080:five_prime_UTR
TGAAATTTCTGCTGGTGATT+TGG 0.359064 1_2:-55371871 Msa0078080:five_prime_UTR
CACACTGGTCCCACTTATAT+AGG 0.362155 1_2:+55371566 None:intergenic
AAGCATACCCCAAATATAGA+AGG 0.366100 1_2:+55369045 None:intergenic
AATACAAAGATATTCCATTA+TGG 0.367235 1_2:-55370074 Msa0078080:CDS
CTTACAAAAGCATTCATTCT+CGG 0.367708 1_2:-55371489 Msa0078080:five_prime_UTR
AACAGAGACATGCTATCTTT+TGG 0.368243 1_2:-55371937 Msa0078080:five_prime_UTR
ACAGCACAAGCCACATTGGC+AGG 0.372362 1_2:+55370965 None:intergenic
CAAAAGGGATGAGTTGTACT+TGG 0.379437 1_2:-55371839 Msa0078080:five_prime_UTR
TCTGCTGAGGCTGCTAGGTC+TGG 0.380493 1_2:-55369933 Msa0078080:CDS
ATCAAAGTCCTTCATACATT+AGG 0.383859 1_2:+55371757 None:intergenic
AAGAAGCTGTTATGTCTCTA+TGG 0.387207 1_2:-55369683 Msa0078080:CDS
CTTGGTAGCAGTCAAATGTT+TGG 0.389927 1_2:+55372545 None:intergenic
ACATTGGCAGGGGCACCGCC+AGG 0.390542 1_2:+55370977 None:intergenic
CAAATGTCAGGCTTCCTTTG+TGG 0.390789 1_2:-55369959 Msa0078080:CDS
TAAGACTAATGGATCCATAA+TGG 0.395043 1_2:+55370060 None:intergenic
CAGGTAGGGGATGATGAGTT+TGG 0.399164 1_2:-55370287 Msa0078080:CDS
TGGTTCTGAAATAAGACTAA+TGG 0.406052 1_2:+55370049 None:intergenic
ACAACTCTTCTCCTTGTTGA+AGG 0.406999 1_2:+55372501 None:intergenic
TCGCCGAATGATATCACTAA+TGG 0.409144 1_2:+55371070 None:intergenic
GGTCTGGAATCAAAAGCATT+TGG 0.412730 1_2:-55369917 Msa0078080:CDS
ACCATGTAGATCTGCTCATA+TGG 0.422423 1_2:-55370030 Msa0078080:CDS
AAGCCTGACATTTGGATCAT+AGG 0.423973 1_2:+55369968 None:intergenic
TTTGTGACATTGAGGAAAGA+TGG 0.427613 1_2:-55370179 Msa0078080:CDS
AATGAATAACTTGGTAGGCT+TGG 0.431827 1_2:+55372626 None:intergenic
GCTTGTGCTGTGTCCAAACT+TGG 0.436119 1_2:-55370953 Msa0078080:CDS
AGCTCACTCAACTTGGTGTT+AGG 0.443465 1_2:-55372419 Msa0078080:five_prime_UTR
ATAACAGCTTCTTCATTCTC+AGG 0.444898 1_2:+55369693 None:intergenic
CACAAAGGAAGCCTGACATT+TGG 0.445582 1_2:+55369960 None:intergenic
AGTTTAGTTGGCTTTAGAGC+TGG 0.453062 1_2:+55368779 None:intergenic
AACACCAAGTTGAGTGAGCT+TGG 0.455326 1_2:+55372422 None:intergenic
GTGAAGGCAATTGACACAAC+TGG 0.456721 1_2:-55369117 Msa0078080:CDS
AGACACATCTGGTGTATCCT+TGG 0.457720 1_2:-55371026 Msa0078080:CDS
TTCTGAGCCTCTTCAGCAGT+TGG 0.458744 1_2:+55368810 None:intergenic
AGTTGAGTGAGCTTGGACTC+AGG 0.458878 1_2:+55372429 None:intergenic
GGCAAAGTTACACTTACCTT+GGG 0.470688 1_2:+55372522 None:intergenic
CACTCCTAGTGGGGCTAATG+AGG 0.472036 1_2:-55371898 Msa0078080:five_prime_UTR
TCCTTTGTGGCCTTCTGCTG+AGG 0.474259 1_2:-55369946 Msa0078080:CDS
AAGAAGAAGAACAAGATGTC+AGG 0.478396 1_2:-55371103 Msa0078080:exon
ACTGTTCTAAAAGAAATTAG+TGG 0.478563 1_2:-55371459 Msa0078080:five_prime_UTR
TATGTCCATGGAAAATTACT+TGG 0.480875 1_2:+55371966 None:intergenic
TATAATTATAAGGTATGTAA+TGG 0.481825 1_2:+55371382 None:intergenic
TTAACATTTGCAAATGCTTG+TGG 0.485254 1_2:-55368873 Msa0078080:CDS
ATTGAGGAAAGATGGAGAGA+GGG 0.488808 1_2:-55370171 Msa0078080:CDS
CTCAACTTGGTGTTAGGCAG+TGG 0.492268 1_2:-55372413 Msa0078080:five_prime_UTR
ATTGGCAGGGGCACCGCCAG+GGG 0.492610 1_2:+55370979 None:intergenic
GGCCTTCTGCTGAGGCTGCT+AGG 0.493211 1_2:-55369938 Msa0078080:CDS
TGCACTTCCAACTGCTGAAG+AGG 0.495831 1_2:-55368817 Msa0078080:CDS
AAATAGGTTTCCTATATAAG+TGG 0.497597 1_2:-55371576 Msa0078080:five_prime_UTR
CATTGGCAGGGGCACCGCCA+GGG 0.499364 1_2:+55370978 None:intergenic
GATCCATTAGTGATATCATT+CGG 0.499392 1_2:-55371073 Msa0078080:CDS
AGGCAAAGTTACACTTACCT+TGG 0.501016 1_2:+55372521 None:intergenic
TCTTCAGCAGTTGGAAGTGC+AGG 0.503583 1_2:+55368819 None:intergenic
ATTAAGAACCTTGCCGATGA+AGG 0.504091 1_2:+55370919 None:intergenic
CTTAAATTTGGGTTTCACAC+TGG 0.505733 1_2:+55371551 None:intergenic
ACCCAAATTTAAGGTACCAC+TGG 0.505898 1_2:-55371541 Msa0078080:five_prime_UTR
GACCTAGCAGCCTCAGCAGA+AGG 0.506010 1_2:+55369936 None:intergenic
AAGGATACACCAGATGTGTC+TGG 0.508328 1_2:+55371028 None:intergenic
AAGCTGCTTATTATCACTGA+TGG 0.515902 1_2:-55369648 Msa0078080:CDS
AATTTGTCTAGACTCTAGAA+AGG 0.516976 1_2:-55372731 Msa0078080:five_prime_UTR
TGTGCTGTGTCCAAACTTGG+TGG 0.518945 1_2:-55370950 Msa0078080:CDS
CACAGAGGCAAGAACTGCAT+TGG 0.524471 1_2:-55370204 Msa0078080:CDS
TGTACTTGGGATGTGTCTGT+TGG 0.525073 1_2:-55371825 Msa0078080:five_prime_UTR
GAGTCCAAGCTCACTCAACT+TGG 0.526860 1_2:-55372426 Msa0078080:five_prime_UTR
AGCAGTTGGAAGTGCAGGAA+TGG 0.528605 1_2:+55368824 None:intergenic
TGTCCTATGATCCAAATGTC+AGG 0.532074 1_2:-55369971 Msa0078080:CDS
AATCAAAAGCATTTGGAATG+AGG 0.534914 1_2:-55369910 Msa0078080:CDS
CATTGAGGAAAGATGGAGAG+AGG 0.536347 1_2:-55370172 Msa0078080:CDS
CATTCTGTTGCAATTTACAA+TGG 0.539718 1_2:-55372607 Msa0078080:five_prime_UTR
TATTATCACTGATGGAGAGA+AGG 0.541140 1_2:-55369640 Msa0078080:CDS
GGTGGCAATGCTGCCTTCAT+CGG 0.543040 1_2:-55370932 Msa0078080:CDS
AGTTACACTTACCTTGGGCT+TGG 0.544555 1_2:+55372527 None:intergenic
TTGGGATGTGTCTGTTGGTG+TGG 0.547160 1_2:-55371820 Msa0078080:five_prime_UTR
AGTCAAATGTTTGGTTTGTG+AGG 0.547845 1_2:+55372554 None:intergenic
TTCAGTAACATATCAGCACT+AGG 0.548072 1_2:+55370128 None:intergenic
GCAATTGACACAACTGGTGC+TGG 0.548770 1_2:-55369111 Msa0078080:CDS
AATGAATATAGCTAGTCCTC+TGG 0.549042 1_2:+55368733 None:intergenic
TATGCTTTCATCAAAGCCCC+TGG 0.549304 1_2:-55370995 Msa0078080:CDS
GTCCATGGAAAATTACTTGG+AGG 0.553197 1_2:+55371969 None:intergenic
ATTATCACTGATGGAGAGAA+GGG 0.554637 1_2:-55369639 Msa0078080:CDS
GAATGAGGCTGATTTCATCA+AGG 0.558047 1_2:-55369895 Msa0078080:intron
GCAGCTGTCACAGAGAAACT+TGG 0.559175 1_2:-55372474 Msa0078080:five_prime_UTR
ACTACATGCCTAATGTATGA+AGG 0.560203 1_2:-55371765 Msa0078080:five_prime_UTR
TAGGGGATGATGAGTTTGGA+AGG 0.562525 1_2:-55370283 Msa0078080:CDS
AAGTGAAGGTCACTCCTAGT+GGG 0.564562 1_2:-55371908 Msa0078080:five_prime_UTR
CAGCACAAGCCACATTGGCA+GGG 0.565146 1_2:+55370966 None:intergenic
AGCACAAGCCACATTGGCAG+GGG 0.566309 1_2:+55370967 None:intergenic
TCCATGGAAAATTACTTGGA+GGG 0.566600 1_2:+55371970 None:intergenic
GCCTCAGCAGAAGGCCACAA+AGG 0.575264 1_2:+55369945 None:intergenic
AATAGGTTTCCTATATAAGT+GGG 0.575361 1_2:-55371575 Msa0078080:five_prime_UTR
GCCATATGAGCAGATCTACA+TGG 0.575838 1_2:+55370029 None:intergenic
TTGCAACAGAATGAATAACT+TGG 0.585982 1_2:+55372617 None:intergenic
AAAGTGAAGGTCACTCCTAG+TGG 0.587646 1_2:-55371909 Msa0078080:five_prime_UTR
TCAGTAACATATCAGCACTA+GGG 0.589086 1_2:+55370129 None:intergenic
GAGGCAGTTGAAATTTCTGC+TGG 0.589901 1_2:-55371879 Msa0078080:five_prime_UTR
AGCATACCCCAAATATAGAA+GGG 0.593760 1_2:+55369046 None:intergenic
GGACACAGCACAAGCCACAT+TGG 0.596726 1_2:+55370961 None:intergenic
GCCATGAAAGCTGCTAGAGA+AGG 0.601701 1_2:-55370005 Msa0078080:CDS
CAATGCTGCCTTCATCGGCA+AGG 0.604108 1_2:-55370927 Msa0078080:intron
TGGCGGTGCCCCTGCCAATG+TGG 0.604697 1_2:-55370975 Msa0078080:CDS
TGAGTGAGCTTGGACTCAGG+AGG 0.606187 1_2:+55372432 None:intergenic
AAAAGGGATGAGTTGTACTT+GGG 0.609307 1_2:-55371838 Msa0078080:five_prime_UTR
ATGGCATCATCATCATGTGT+AGG 0.613363 1_2:-55372588 Msa0078080:five_prime_UTR
AGCAATGTGTACAACACAGA+AGG 0.614417 1_2:-55368850 Msa0078080:CDS
GGGTTGTAGATATGTCACTA+AGG 0.615724 1_2:-55369619 Msa0078080:intron
GTGTAACTTTGCCTTCAACA+AGG 0.618419 1_2:-55372512 Msa0078080:five_prime_UTR
AAGAGACCCTTCTATATTTG+GGG 0.620591 1_2:-55369052 Msa0078080:intron
GGTAAGTGGGTTCTCAGTGA+AGG 0.620599 1_2:-55369133 Msa0078080:CDS
TCTGTTGCATCATATGTCCA+TGG 0.622988 1_2:+55371954 None:intergenic
AAAATTTGATGATAGTCCAG+AGG 0.623470 1_2:-55368749 Msa0078080:three_prime_UTR
AACAGAATGAATAACTTGGT+AGG 0.628294 1_2:+55372621 None:intergenic
AAAACAATAATAACTGACAA+AGG 0.628440 1_2:-55371132 Msa0078080:five_prime_UTR
GAGTGAGCTTGGACTCAGGA+GGG 0.632998 1_2:+55372433 None:intergenic
GAAAGAATCTGAATTGAACA+TGG 0.634038 1_2:-55370108 Msa0078080:CDS
GCAATGTGTACAACACAGAA+GGG 0.647308 1_2:-55368849 Msa0078080:CDS
ACTGCCTCATTAGCCCCACT+AGG 0.662701 1_2:+55371894 None:intergenic
TGGTGCACTTCTCAGAGATG+TGG 0.663280 1_2:-55369076 Msa0078080:CDS
ATGAAAGCTGCTAGAGAAGG+TGG 0.665141 1_2:-55370002 Msa0078080:CDS
TTTGACTGCTACCAAGCCCA+AGG 0.672230 1_2:-55372538 Msa0078080:five_prime_UTR
GAAAGCATAAGATTCAGCCA+AGG 0.678603 1_2:+55371009 None:intergenic
GCTTTCATCAAAGCCCCTGG+CGG 0.681461 1_2:-55370992 Msa0078080:CDS
AGTGAAGGTCACTCCTAGTG+GGG 0.682734 1_2:-55371907 Msa0078080:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTTTTATTTTAATGAAAA+AGG - chr1_2:55369170-55369189 Msa0078080:intron 10.0%
!!! ACTTAAAAGTTATTTTTAAA+GGG + chr1_2:55369817-55369836 None:intergenic 10.0%
!!! AACTTAAAAGTTATTTTTAA+AGG + chr1_2:55369818-55369837 None:intergenic 10.0%
!!! ATGTTTGAAATATAATTATA+AGG + chr1_2:55370082-55370101 None:intergenic 10.0%
!! CTTTGATTAATTGAATAAAT+AGG - chr1_2:55369710-55369729 Msa0078080:CDS 15.0%
!!! TATTTTAAGACCATAAAAAT+AGG - chr1_2:55369859-55369878 Msa0078080:intron 15.0%
!! TATAATTATAAGGTATGTAA+TGG + chr1_2:55370072-55370091 None:intergenic 15.0%
!! TAATAACAAACACAAATATA+TGG - chr1_2:55370200-55370219 Msa0078080:CDS 15.0%
!! ATAAAAATCAACAATGTAAT+AGG + chr1_2:55370254-55370273 None:intergenic 15.0%
!! ATATATACTTAAAATGAATG+CGG - chr1_2:55370605-55370624 Msa0078080:intron 15.0%
!!! TATAGAATATTGATAATATG+AGG - chr1_2:55371062-55371081 Msa0078080:CDS 15.0%
!!! ATAGAATATTGATAATATGA+GGG - chr1_2:55371063-55371082 Msa0078080:CDS 15.0%
!!! TTGAATTTGAAATTTCTTTA+TGG - chr1_2:55371591-55371610 Msa0078080:five_prime_UTR 15.0%
!! TAAAAATAATCTTCTTGAAT+GGG + chr1_2:55371990-55372009 None:intergenic 15.0%
!! ATAAAAATAATCTTCTTGAA+TGG + chr1_2:55371991-55372010 None:intergenic 15.0%
!!! ATTTTTATCTATTCACAAAT+AGG - chr1_2:55372003-55372022 Msa0078080:intron 15.0%
!!! TTTTTATCTATTCACAAATA+GGG - chr1_2:55372004-55372023 Msa0078080:intron 15.0%
!!! AATGAGAATTATTTTTACAA+AGG + chr1_2:55372494-55372513 None:intergenic 15.0%
!! TTTGTAAAAATAATTCTCAT+TGG - chr1_2:55372493-55372512 Msa0078080:five_prime_UTR 15.0%
!!! GTAAAGTTTATCTTTTCTTT+TGG + chr1_2:55368769-55368788 None:intergenic 20.0%
!! TACAGTTAAAGTCATATATA+TGG + chr1_2:55369294-55369313 None:intergenic 20.0%
!!! AAACGTTTTTTATGATTTGA+CGG - chr1_2:55369329-55369348 Msa0078080:intron 20.0%
!! ACAACATAAAAAATCTTTCA+CGG - chr1_2:55369371-55369390 Msa0078080:intron 20.0%
!!! ATATAGGAAACCTATTTTTA+TGG + chr1_2:55369872-55369891 None:intergenic 20.0%
!! AAAACAATAATAACTGACAA+AGG - chr1_2:55370319-55370338 Msa0078080:intron 20.0%
!! GATAAACATGATAGTAAAAT+GGG + chr1_2:55370569-55370588 None:intergenic 20.0%
!!! GCATTCATTTTAAGTATATA+TGG + chr1_2:55370606-55370625 None:intergenic 20.0%
!! ATAAATTTCAATGACCATAT+TGG + chr1_2:55370803-55370822 None:intergenic 20.0%
!! ATATGGTCATTGAAATTTAT+AGG - chr1_2:55370803-55370822 Msa0078080:intron 20.0%
!! AATACAAAGATATTCCATTA+TGG - chr1_2:55371377-55371396 Msa0078080:five_prime_UTR 20.0%
!! TTTAAAAGAATCTGTAAAAG+TGG - chr1_2:55371664-55371683 Msa0078080:five_prime_UTR 20.0%
!!! TGAAATTTTTGTTTGCTTTA+TGG - chr1_2:55372517-55372536 Msa0078080:five_prime_UTR 20.0%
!!! ATTTTAAAGGAAAGTTTAGT+TGG + chr1_2:55372687-55372706 None:intergenic 20.0%
! AAGAAATGTGGTATTTACTT+GGG + chr1_2:55369064-55369083 None:intergenic 25.0%
! AAGAAGATAATGAAGAAATG+TGG + chr1_2:55369076-55369095 None:intergenic 25.0%
! TTAGAATAATAGACATGATG+AGG + chr1_2:55369107-55369126 None:intergenic 25.0%
!!! GTTTCTTACATTTTTTCTCA+TGG - chr1_2:55369135-55369154 Msa0078080:CDS 25.0%
! TTAACGAGATTAATACACTA+TGG - chr1_2:55369248-55369267 Msa0078080:intron 25.0%
! ATATGACTTTAACTGTAGTT+AGG - chr1_2:55369297-55369316 Msa0078080:intron 25.0%
! TTGGTGTAAATAAAAACAGA+TGG - chr1_2:55369453-55369472 Msa0078080:intron 25.0%
! TGGTGTAAATAAAAACAGAT+GGG - chr1_2:55369454-55369473 Msa0078080:intron 25.0%
! AAATAGGTTTCCTATATAAG+TGG - chr1_2:55369875-55369894 Msa0078080:intron 25.0%
! AATAGGTTTCCTATATAAGT+GGG - chr1_2:55369876-55369895 Msa0078080:intron 25.0%
!!! ACTGTTCTAAAAGAAATTAG+TGG - chr1_2:55369992-55370011 Msa0078080:CDS 25.0%
! CTAAGCATTCAATCATAAAT+TGG + chr1_2:55370109-55370128 None:intergenic 25.0%
! TGTCTCACAAATATAGTTTA+AGG + chr1_2:55370277-55370296 None:intergenic 25.0%
! CGATAAACATGATAGTAAAA+TGG + chr1_2:55370570-55370589 None:intergenic 25.0%
! TTCTGAGTAAATATCCAATA+TGG - chr1_2:55370786-55370805 Msa0078080:intron 25.0%
!!! CGTATGTCATTTTTTTTGTT+AGG + chr1_2:55371143-55371162 None:intergenic 25.0%
! TATGGAAGTCTATTAAATGA+TGG - chr1_2:55371609-55371628 Msa0078080:five_prime_UTR 25.0%
! AAACTTACCATTCTCTATAT+AGG - chr1_2:55371697-55371716 Msa0078080:five_prime_UTR 25.0%
!!! TTTTCAAAATATGGATTGGA+TGG + chr1_2:55371864-55371883 None:intergenic 25.0%
!! AAAGAGCTCTTTTCAAAATA+TGG + chr1_2:55371873-55371892 None:intergenic 25.0%
!! TTTTGTTAACTGATCATTAG+TGG - chr1_2:55371924-55371943 Msa0078080:five_prime_UTR 25.0%
! AGATAAAATTAAGTCAAGCT+GGG + chr1_2:55372181-55372200 None:intergenic 25.0%
! AAGATAAAATTAAGTCAAGC+TGG + chr1_2:55372182-55372201 None:intergenic 25.0%
! TCAAACAATATTTCCAAAGA+TGG + chr1_2:55372278-55372297 None:intergenic 25.0%
!! GTTTGAATGCAGAATTTTAA+AGG - chr1_2:55372292-55372311 Msa0078080:intron 25.0%
!!! AATGCAGAATTTTAAAGGAA+GGG - chr1_2:55372297-55372316 Msa0078080:intron 25.0%
!! GGACTATCATCAAATTTTAA+AGG + chr1_2:55372700-55372719 None:intergenic 25.0%
! AATTTGTCTAGACTCTAGAA+AGG - chr1_2:55368720-55368739 Msa0078080:three_prime_UTR 30.0%
AACAGAATGAATAACTTGGT+AGG + chr1_2:55368833-55368852 None:intergenic 30.0%
TTGCAACAGAATGAATAACT+TGG + chr1_2:55368837-55368856 None:intergenic 30.0%
CATTCTGTTGCAATTTACAA+TGG - chr1_2:55368844-55368863 Msa0078080:CDS 30.0%
GAAGAAATGTGGTATTTACT+TGG + chr1_2:55369065-55369084 None:intergenic 30.0%
!!! TCTTACATTTTTTCTCATGG+TGG - chr1_2:55369138-55369157 Msa0078080:CDS 30.0%
GGTGTAAATAAAAACAGATG+GGG - chr1_2:55369455-55369474 Msa0078080:intron 30.0%
TATGTCCATGGAAAATTACT+TGG + chr1_2:55369488-55369507 None:intergenic 30.0%
!! ATTTGGTTGTTTTCCCAAAA+GGG - chr1_2:55369597-55369616 Msa0078080:intron 30.0%
ATCAAAGTCCTTCATACATT+AGG + chr1_2:55369697-55369716 None:intergenic 30.0%
! GAGAATGAATGCTTTTGTAA+GGG + chr1_2:55369963-55369982 None:intergenic 30.0%
!! CTTACAAAAGCATTCATTCT+CGG - chr1_2:55369962-55369981 Msa0078080:CDS 30.0%
GATCCATTAGTGATATCATT+CGG - chr1_2:55370378-55370397 Msa0078080:intron 30.0%
ATACTTAAAATGAATGCGGA+TGG - chr1_2:55370609-55370628 Msa0078080:intron 30.0%
TACTTAAAATGAATGCGGAT+GGG - chr1_2:55370610-55370629 Msa0078080:intron 30.0%
ATTTACGTATAGTCTACCAA+CGG + chr1_2:55370703-55370722 None:intergenic 30.0%
GTTTGATGTGGTATTATATG+AGG - chr1_2:55370739-55370758 Msa0078080:intron 30.0%
TTATCTTAGCAAATGCATCT+CGG - chr1_2:55370946-55370965 Msa0078080:CDS 30.0%
GAGTAGATATCCTGTTTAAT+CGG + chr1_2:55371112-55371131 None:intergenic 30.0%
CAAAAAAAATGACATACGAC+AGG - chr1_2:55371145-55371164 Msa0078080:five_prime_UTR 30.0%
AAAAATGGAGTGAATACAGA+TGG - chr1_2:55371212-55371231 Msa0078080:five_prime_UTR 30.0%
GAAAGAATCTGAATTGAACA+TGG - chr1_2:55371343-55371362 Msa0078080:five_prime_UTR 30.0%
! TAAGACTAATGGATCCATAA+TGG + chr1_2:55371394-55371413 None:intergenic 30.0%
!! TGGTTCTGAAATAAGACTAA+TGG + chr1_2:55371405-55371424 None:intergenic 30.0%
!! AATCAAAAGCATTTGGAATG+AGG - chr1_2:55371541-55371560 Msa0078080:five_prime_UTR 30.0%
GAGGATATAACAGAAAACTA+GGG - chr1_2:55371631-55371650 Msa0078080:five_prime_UTR 30.0%
TCACTTACCTATATAGAGAA+TGG + chr1_2:55371707-55371726 None:intergenic 30.0%
! GCTCTTTTCAAAATATGGAT+TGG + chr1_2:55371868-55371887 None:intergenic 30.0%
GAAAATAGGATAGCAACTTA+TGG + chr1_2:55372121-55372140 None:intergenic 30.0%
TATGGAGAGCTTATGAAAAT+AGG + chr1_2:55372135-55372154 None:intergenic 30.0%
! ACTGTTTTCATAAGCTACTA+TGG + chr1_2:55372153-55372172 None:intergenic 30.0%
CTAAACTATTCATCCATCTT+TGG - chr1_2:55372262-55372281 Msa0078080:intron 30.0%
!! GAATGCAGAATTTTAAAGGA+AGG - chr1_2:55372296-55372315 Msa0078080:intron 30.0%
!! AATTTTAAAGGAAGGGTAAG+TGG - chr1_2:55372304-55372323 Msa0078080:intron 30.0%
!! ATTTTAAAGGAAGGGTAAGT+GGG - chr1_2:55372305-55372324 Msa0078080:intron 30.0%
CTTTATGGAATTCAACATGA+AGG - chr1_2:55372532-55372551 Msa0078080:five_prime_UTR 30.0%
! GTTAAAGTCTCTCTCAATTT+TGG + chr1_2:55372563-55372582 None:intergenic 30.0%
TTAACATTTGCAAATGCTTG+TGG - chr1_2:55372578-55372597 Msa0078080:five_prime_UTR 30.0%
! AAAATTTGATGATAGTCCAG+AGG - chr1_2:55372702-55372721 Msa0078080:five_prime_UTR 30.0%
AATGAATAACTTGGTAGGCT+TGG + chr1_2:55368828-55368847 None:intergenic 35.0%
!! AGTCAAATGTTTGGTTTGTG+AGG + chr1_2:55368900-55368919 None:intergenic 35.0%
TCCATGGAAAATTACTTGGA+GGG + chr1_2:55369484-55369503 None:intergenic 35.0%
! AACAGAGACATGCTATCTTT+TGG - chr1_2:55369514-55369533 Msa0078080:intron 35.0%
!! TCTTTTGGAAGGAAAAGTGA+AGG - chr1_2:55369529-55369548 Msa0078080:intron 35.0%
TGAAATTTCTGCTGGTGATT+TGG - chr1_2:55369580-55369599 Msa0078080:intron 35.0%
!! GATTTGGTTGTTTTCCCAAA+AGG - chr1_2:55369596-55369615 Msa0078080:intron 35.0%
! AAGTACAACTCATCCCTTTT+GGG + chr1_2:55369613-55369632 None:intergenic 35.0%
AAAAGGGATGAGTTGTACTT+GGG - chr1_2:55369613-55369632 Msa0078080:intron 35.0%
ACTACATGCCTAATGTATGA+AGG - chr1_2:55369686-55369705 Msa0078080:CDS 35.0%
! CTTAAATTTGGGTTTCACAC+TGG + chr1_2:55369903-55369922 None:intergenic 35.0%
CAGTGTGAAACCCAAATTTA+AGG - chr1_2:55369901-55369920 Msa0078080:CDS 35.0%
TCCAGTGGTACCTTAAATTT+GGG + chr1_2:55369914-55369933 None:intergenic 35.0%
ATCCAGTGGTACCTTAAATT+TGG + chr1_2:55369915-55369934 None:intergenic 35.0%
! TACCACTGGATAAGTTTTTG+TGG - chr1_2:55369924-55369943 Msa0078080:CDS 35.0%
! CGAGAATGAATGCTTTTGTA+AGG + chr1_2:55369964-55369983 None:intergenic 35.0%
AAGAAGAAGAACAAGATGTC+AGG - chr1_2:55370348-55370367 Msa0078080:intron 35.0%
TTTACGTATAGTCTACCAAC+GGG + chr1_2:55370702-55370721 None:intergenic 35.0%
CTATACGTAAATATTCACCG+AGG - chr1_2:55370711-55370730 Msa0078080:intron 35.0%
GTAAATATTCACCGAGGTTA+TGG - chr1_2:55370717-55370736 Msa0078080:intron 35.0%
TTGCTAAGATAACACAACTG+AGG + chr1_2:55370938-55370957 None:intergenic 35.0%
CGGAGGCTATTAAATTGAAA+TGG + chr1_2:55370988-55371007 None:intergenic 35.0%
ATAGCCTCCGTAAATATGAA+TGG - chr1_2:55370998-55371017 Msa0078080:CDS 35.0%
CGTCCTTCCATTCATATTTA+CGG + chr1_2:55371008-55371027 None:intergenic 35.0%
TATGAGGGACTAGATTGATA+TGG - chr1_2:55371078-55371097 Msa0078080:CDS 35.0%
GACTAGATTGATATGGTCAA+GGG - chr1_2:55371085-55371104 Msa0078080:CDS 35.0%
AAAAATGACATACGACAGGT+AGG - chr1_2:55371149-55371168 Msa0078080:five_prime_UTR 35.0%
AAAATGACATACGACAGGTA+GGG - chr1_2:55371150-55371169 Msa0078080:five_prime_UTR 35.0%
GCAGACATCTTGAAGAAAAA+TGG - chr1_2:55371197-55371216 Msa0078080:five_prime_UTR 35.0%
TTTGTGACATTGAGGAAAGA+TGG - chr1_2:55371272-55371291 Msa0078080:five_prime_UTR 35.0%
TCAGTAACATATCAGCACTA+GGG + chr1_2:55371325-55371344 None:intergenic 35.0%
TTCAGTAACATATCAGCACT+AGG + chr1_2:55371326-55371345 None:intergenic 35.0%
GGAAGTCTATTAAATGATGG+AGG - chr1_2:55371612-55371631 Msa0078080:five_prime_UTR 35.0%
GGAGGATATAACAGAAAACT+AGG - chr1_2:55371630-55371649 Msa0078080:five_prime_UTR 35.0%
ATAACAGCTTCTTCATTCTC+AGG + chr1_2:55371761-55371780 None:intergenic 35.0%
AAGAAGCTGTTATGTCTCTA+TGG - chr1_2:55371768-55371787 Msa0078080:five_prime_UTR 35.0%
AAGCTGCTTATTATCACTGA+TGG - chr1_2:55371803-55371822 Msa0078080:five_prime_UTR 35.0%
TATTATCACTGATGGAGAGA+AGG - chr1_2:55371811-55371830 Msa0078080:five_prime_UTR 35.0%
ATTATCACTGATGGAGAGAA+GGG - chr1_2:55371812-55371831 Msa0078080:five_prime_UTR 35.0%
TGTTCGAAACAGTCTTACAA+GGG + chr1_2:55372072-55372091 None:intergenic 35.0%
TTGTTCGAAACAGTCTTACA+AGG + chr1_2:55372073-55372092 None:intergenic 35.0%
CAAGAGACCCTTCTATATTT+GGG - chr1_2:55372398-55372417 Msa0078080:intron 35.0%
AAGAGACCCTTCTATATTTG+GGG - chr1_2:55372399-55372418 Msa0078080:intron 35.0%
AGCATACCCCAAATATAGAA+GGG + chr1_2:55372408-55372427 None:intergenic 35.0%
AAGCATACCCCAAATATAGA+AGG + chr1_2:55372409-55372428 None:intergenic 35.0%
! GTATTTTTCTGTCACTAGAG+TGG + chr1_2:55372456-55372475 None:intergenic 35.0%
AATGAATATAGCTAGTCCTC+TGG + chr1_2:55372721-55372740 None:intergenic 35.0%
TAACTTGGTAGGCTTGGATT+TGG + chr1_2:55368822-55368841 None:intergenic 40.0%
ATGGCATCATCATCATGTGT+AGG - chr1_2:55368863-55368882 Msa0078080:CDS 40.0%
! CTTGGTAGCAGTCAAATGTT+TGG + chr1_2:55368909-55368928 None:intergenic 40.0%
GGCAAAGTTACACTTACCTT+GGG + chr1_2:55368932-55368951 None:intergenic 40.0%
AGGCAAAGTTACACTTACCT+TGG + chr1_2:55368933-55368952 None:intergenic 40.0%
GTGTAACTTTGCCTTCAACA+AGG - chr1_2:55368939-55368958 Msa0078080:intron 40.0%
ACAACTCTTCTCCTTGTTGA+AGG + chr1_2:55368953-55368972 None:intergenic 40.0%
CTAGAAGAGCAACTAGCATA+GGG + chr1_2:55369228-55369247 None:intergenic 40.0%
ACTAGAAGAGCAACTAGCAT+AGG + chr1_2:55369229-55369248 None:intergenic 40.0%
! TGACTGTGTACGCACATTTT+TGG - chr1_2:55369434-55369453 Msa0078080:intron 40.0%
GTCCATGGAAAATTACTTGG+AGG + chr1_2:55369485-55369504 None:intergenic 40.0%
TCTGTTGCATCATATGTCCA+TGG + chr1_2:55369500-55369519 None:intergenic 40.0%
! GAGACATGCTATCTTTTGGA+AGG - chr1_2:55369518-55369537 Msa0078080:intron 40.0%
! CAAGTACAACTCATCCCTTT+TGG + chr1_2:55369614-55369633 None:intergenic 40.0%
CAAAAGGGATGAGTTGTACT+TGG - chr1_2:55369612-55369631 Msa0078080:intron 40.0%
! ACCCAAATTTAAGGTACCAC+TGG - chr1_2:55369910-55369929 Msa0078080:CDS 40.0%
CACCACAAAAACTTATCCAG+TGG + chr1_2:55369929-55369948 None:intergenic 40.0%
TCGCCGAATGATATCACTAA+TGG + chr1_2:55370384-55370403 None:intergenic 40.0%
! GATTTTGTTCCAGACACATC+TGG - chr1_2:55370414-55370433 Msa0078080:intron 40.0%
! GAAAGCATAAGATTCAGCCA+AGG + chr1_2:55370445-55370464 None:intergenic 40.0%
ATTAAGAACCTTGCCGATGA+AGG + chr1_2:55370535-55370554 None:intergenic 40.0%
TAAATCGCAGCTAATGCAAG+CGG + chr1_2:55370660-55370679 None:intergenic 40.0%
TTACGTATAGTCTACCAACG+GGG + chr1_2:55370701-55370720 None:intergenic 40.0%
ACCACATCAAACCATAACCT+CGG + chr1_2:55370731-55370750 None:intergenic 40.0%
CCTTCCATTCATATTTACGG+AGG + chr1_2:55371005-55371024 None:intergenic 40.0%
CCTCCGTAAATATGAATGGA+AGG - chr1_2:55371002-55371021 Msa0078080:CDS 40.0%
GGACTAGATTGATATGGTCA+AGG - chr1_2:55371084-55371103 Msa0078080:CDS 40.0%
AAATGACATACGACAGGTAG+GGG - chr1_2:55371151-55371170 Msa0078080:five_prime_UTR 40.0%
! TGGTGTTCTTTTTGACACAG+AGG - chr1_2:55371232-55371251 Msa0078080:five_prime_UTR 40.0%
!!! CATTGGCTTTTGTGACATTG+AGG - chr1_2:55371264-55371283 Msa0078080:five_prime_UTR 40.0%
ATTGAGGAAAGATGGAGAGA+GGG - chr1_2:55371280-55371299 Msa0078080:five_prime_UTR 40.0%
ACCATGTAGATCTGCTCATA+TGG - chr1_2:55371421-55371440 Msa0078080:five_prime_UTR 40.0%
TGTCCTATGATCCAAATGTC+AGG - chr1_2:55371480-55371499 Msa0078080:five_prime_UTR 40.0%
AAGCCTGACATTTGGATCAT+AGG + chr1_2:55371486-55371505 None:intergenic 40.0%
!! GGTCTGGAATCAAAAGCATT+TGG - chr1_2:55371534-55371553 Msa0078080:five_prime_UTR 40.0%
! GAATGAGGCTGATTTCATCA+AGG - chr1_2:55371556-55371575 Msa0078080:five_prime_UTR 40.0%
GGGTTGTAGATATGTCACTA+AGG - chr1_2:55371832-55371851 Msa0078080:five_prime_UTR 40.0%
AGTCTTACAAGGGCTTATGT+CGG + chr1_2:55372062-55372081 None:intergenic 40.0%
GCAAGAGACCCTTCTATATT+TGG - chr1_2:55372397-55372416 Msa0078080:intron 40.0%
AGCAATGTGTACAACACAGA+AGG - chr1_2:55372601-55372620 Msa0078080:five_prime_UTR 40.0%
GCAATGTGTACAACACAGAA+GGG - chr1_2:55372602-55372621 Msa0078080:five_prime_UTR 40.0%
!! AGTTTAGTTGGCTTTAGAGC+TGG + chr1_2:55372675-55372694 None:intergenic 40.0%
AGTTACACTTACCTTGGGCT+TGG + chr1_2:55368927-55368946 None:intergenic 45.0%
! AACACCAAGTTGAGTGAGCT+TGG + chr1_2:55369032-55369051 None:intergenic 45.0%
!! AGCTCACTCAACTTGGTGTT+AGG - chr1_2:55369032-55369051 Msa0078080:intron 45.0%
! GCCCTCCAAGTAATTTTCCA+TGG - chr1_2:55369480-55369499 Msa0078080:intron 45.0%
AAAGTGAAGGTCACTCCTAG+TGG - chr1_2:55369542-55369561 Msa0078080:intron 45.0%
AAGTGAAGGTCACTCCTAGT+GGG - chr1_2:55369543-55369562 Msa0078080:intron 45.0%
GAGGCAGTTGAAATTTCTGC+TGG - chr1_2:55369572-55369591 Msa0078080:intron 45.0%
TGTACTTGGGATGTGTCTGT+TGG - chr1_2:55369626-55369645 Msa0078080:CDS 45.0%
CACACTGGTCCCACTTATAT+AGG + chr1_2:55369888-55369907 None:intergenic 45.0%
! AGACCAAGCAGCGCAATTTT+TGG - chr1_2:55370039-55370058 Msa0078080:CDS 45.0%
TGACCAAAAATTGCGCTGCT+TGG + chr1_2:55370045-55370064 None:intergenic 45.0%
!!! AGCAGCGCAATTTTTGGTCA+AGG - chr1_2:55370045-55370064 Msa0078080:CDS 45.0%
AAGGATACACCAGATGTGTC+TGG + chr1_2:55370426-55370445 None:intergenic 45.0%
AGACACATCTGGTGTATCCT+TGG - chr1_2:55370425-55370444 Msa0078080:intron 45.0%
TATGCTTTCATCAAAGCCCC+TGG - chr1_2:55370456-55370475 Msa0078080:intron 45.0%
GCTTGCATTAGCTGCGATTT+AGG - chr1_2:55370659-55370678 Msa0078080:intron 45.0%
ACCGAGGTTATGGTTTGATG+TGG - chr1_2:55370727-55370746 Msa0078080:intron 45.0%
TAGGGGATGATGAGTTTGGA+AGG - chr1_2:55371168-55371187 Msa0078080:five_prime_UTR 45.0%
CATTGAGGAAAGATGGAGAG+AGG - chr1_2:55371279-55371298 Msa0078080:five_prime_UTR 45.0%
GCCATATGAGCAGATCTACA+TGG + chr1_2:55371425-55371444 None:intergenic 45.0%
ACCTTCTCTAGCAGCTTTCA+TGG + chr1_2:55371450-55371469 None:intergenic 45.0%
ATGAAAGCTGCTAGAGAAGG+TGG - chr1_2:55371449-55371468 Msa0078080:five_prime_UTR 45.0%
CACAAAGGAAGCCTGACATT+TGG + chr1_2:55371494-55371513 None:intergenic 45.0%
CAAATGTCAGGCTTCCTTTG+TGG - chr1_2:55371492-55371511 Msa0078080:five_prime_UTR 45.0%
GTGAAGGCAATTGACACAAC+TGG - chr1_2:55372334-55372353 Msa0078080:intron 45.0%
!!! GGTGCTGGTGATTCTTTTGT+TGG - chr1_2:55372355-55372374 Msa0078080:intron 45.0%
TTTGACTGCTACCAAGCCCA+AGG - chr1_2:55368913-55368932 Msa0078080:intron 50.0%
GCAGCTGTCACAGAGAAACT+TGG - chr1_2:55368977-55368996 Msa0078080:intron 50.0%
AGTTGAGTGAGCTTGGACTC+AGG + chr1_2:55369025-55369044 None:intergenic 50.0%
GAGTCCAAGCTCACTCAACT+TGG - chr1_2:55369025-55369044 Msa0078080:intron 50.0%
!! CTCAACTTGGTGTTAGGCAG+TGG - chr1_2:55369038-55369057 Msa0078080:intron 50.0%
AGTGAAGGTCACTCCTAGTG+GGG - chr1_2:55369544-55369563 Msa0078080:intron 50.0%
TTGGGATGTGTCTGTTGGTG+TGG - chr1_2:55369631-55369650 Msa0078080:CDS 50.0%
GCTTGTGCTGTGTCCAAACT+TGG - chr1_2:55370498-55370517 Msa0078080:intron 50.0%
TGTGCTGTGTCCAAACTTGG+TGG - chr1_2:55370501-55370520 Msa0078080:intron 50.0%
CTAATCGAGAGTTTCCCCGT+TGG - chr1_2:55370684-55370703 Msa0078080:intron 50.0%
GGTCAAGGGACCGATTAAAC+AGG - chr1_2:55371099-55371118 Msa0078080:exon 50.0%
CAGGTAGGGGATGATGAGTT+TGG - chr1_2:55371164-55371183 Msa0078080:five_prime_UTR 50.0%
CACAGAGGCAAGAACTGCAT+TGG - chr1_2:55371247-55371266 Msa0078080:five_prime_UTR 50.0%
GCCATGAAAGCTGCTAGAGA+AGG - chr1_2:55371446-55371465 Msa0078080:five_prime_UTR 50.0%
! GGTAAGTGGGTTCTCAGTGA+AGG - chr1_2:55372318-55372337 Msa0078080:intron 50.0%
GCAATTGACACAACTGGTGC+TGG - chr1_2:55372340-55372359 Msa0078080:intron 50.0%
TGGTGCACTTCTCAGAGATG+TGG - chr1_2:55372375-55372394 Msa0078080:intron 50.0%
! AGCAGTTGGAAGTGCAGGAA+TGG + chr1_2:55372630-55372649 None:intergenic 50.0%
! TCTTCAGCAGTTGGAAGTGC+AGG + chr1_2:55372635-55372654 None:intergenic 50.0%
TGCACTTCCAACTGCTGAAG+AGG - chr1_2:55372634-55372653 Msa0078080:five_prime_UTR 50.0%
TTCTGAGCCTCTTCAGCAGT+TGG + chr1_2:55372644-55372663 None:intergenic 50.0%
GAGTGAGCTTGGACTCAGGA+GGG + chr1_2:55369021-55369040 None:intergenic 55.0%
TGAGTGAGCTTGGACTCAGG+AGG + chr1_2:55369022-55369041 None:intergenic 55.0%
CACTCCTAGTGGGGCTAATG+AGG - chr1_2:55369553-55369572 Msa0078080:intron 55.0%
ACTGCCTCATTAGCCCCACT+AGG + chr1_2:55369560-55369579 None:intergenic 55.0%
GCTTTCATCAAAGCCCCTGG+CGG - chr1_2:55370459-55370478 Msa0078080:intron 55.0%
AGCACAAGCCACATTGGCAG+GGG + chr1_2:55370487-55370506 None:intergenic 55.0%
CAGCACAAGCCACATTGGCA+GGG + chr1_2:55370488-55370507 None:intergenic 55.0%
ACAGCACAAGCCACATTGGC+AGG + chr1_2:55370489-55370508 None:intergenic 55.0%
GGACACAGCACAAGCCACAT+TGG + chr1_2:55370493-55370512 None:intergenic 55.0%
GGCAGCATTGCCACCAAGTT+TGG + chr1_2:55370514-55370533 None:intergenic 55.0%
GGTGGCAATGCTGCCTTCAT+CGG - chr1_2:55370519-55370538 Msa0078080:intron 55.0%
CAATGCTGCCTTCATCGGCA+AGG - chr1_2:55370524-55370543 Msa0078080:intron 55.0%
TCGCAGCTAATGCAAGCGGA+AGG + chr1_2:55370656-55370675 None:intergenic 55.0%
TCCTTTGTGGCCTTCTGCTG+AGG - chr1_2:55371505-55371524 Msa0078080:five_prime_UTR 55.0%
GCCTCAGCAGAAGGCCACAA+AGG + chr1_2:55371509-55371528 None:intergenic 60.0%
GACCTAGCAGCCTCAGCAGA+AGG + chr1_2:55371518-55371537 None:intergenic 60.0%
TCTGCTGAGGCTGCTAGGTC+TGG - chr1_2:55371518-55371537 Msa0078080:five_prime_UTR 60.0%
GGCCTTCTGCTGAGGCTGCT+AGG - chr1_2:55371513-55371532 Msa0078080:five_prime_UTR 65.0%
!! ATTGGCAGGGGCACCGCCAG+GGG + chr1_2:55370475-55370494 None:intergenic 70.0%
!! CATTGGCAGGGGCACCGCCA+GGG + chr1_2:55370476-55370495 None:intergenic 70.0%
!! ACATTGGCAGGGGCACCGCC+AGG + chr1_2:55370477-55370496 None:intergenic 70.0%
TGGCGGTGCCCCTGCCAATG+TGG - chr1_2:55370476-55370495 Msa0078080:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 55368698 55372775 55368698 ID=Msa0078080;Name=Msa0078080
chr1_2 mRNA 55368698 55372775 55368698 ID=Msa0078080-mRNA-1;Parent=Msa0078080;Name=Msa0078080-mRNA-1;_AED=0.06;_eAED=0.06;_QI=1259|1|1|1|1|0.83|6|84|327
chr1_2 exon 55368698 55368919 55368698 ID=Msa0078080-mRNA-1:exon:17229;Parent=Msa0078080-mRNA-1
chr1_2 exon 55369053 55369169 55369053 ID=Msa0078080-mRNA-1:exon:17228;Parent=Msa0078080-mRNA-1
chr1_2 exon 55369620 55369754 55369620 ID=Msa0078080-mRNA-1:exon:17227;Parent=Msa0078080-mRNA-1
chr1_2 exon 55369896 55370306 55369896 ID=Msa0078080-mRNA-1:exon:17226;Parent=Msa0078080-mRNA-1
chr1_2 exon 55370928 55372001 55370928 ID=Msa0078080-mRNA-1:exon:17225;Parent=Msa0078080-mRNA-1
chr1_2 exon 55372408 55372775 55372408 ID=Msa0078080-mRNA-1:exon:17224;Parent=Msa0078080-mRNA-1
chr1_2 five_prime_UTR 55372408 55372775 55372408 ID=Msa0078080-mRNA-1:five_prime_utr;Parent=Msa0078080-mRNA-1
chr1_2 five_prime_UTR 55371111 55372001 55371111 ID=Msa0078080-mRNA-1:five_prime_utr;Parent=Msa0078080-mRNA-1
chr1_2 CDS 55370928 55371110 55370928 ID=Msa0078080-mRNA-1:cds;Parent=Msa0078080-mRNA-1
chr1_2 CDS 55369896 55370306 55369896 ID=Msa0078080-mRNA-1:cds;Parent=Msa0078080-mRNA-1
chr1_2 CDS 55369620 55369754 55369620 ID=Msa0078080-mRNA-1:cds;Parent=Msa0078080-mRNA-1
chr1_2 CDS 55369053 55369169 55369053 ID=Msa0078080-mRNA-1:cds;Parent=Msa0078080-mRNA-1
chr1_2 CDS 55368782 55368919 55368782 ID=Msa0078080-mRNA-1:cds;Parent=Msa0078080-mRNA-1
chr1_2 three_prime_UTR 55368698 55368781 55368698 ID=Msa0078080-mRNA-1:three_prime_utr;Parent=Msa0078080-mRNA-1
Gene Sequence

>Msa0078080

ATGTCAGGCTCAAAAGATCCATTAGTGATATCATTCGGCGAGATGCTCATAGATTTTGTTCCAGACACATCTGGTGTATCCTTGGCTGAATCTTATGCTTTCATCAAAGCCCCTGGCGGTGCCCCTGCCAATGTGGCTTGTGCTGTGTCCAAACTTGGTGGCAATGCTGCCTTCATCGGCAAGGTAGGGGATGATGAGTTTGGAAGGATGCTAGCAGACATCTTGAAGAAAAATGGAGTGAATACAGATGGTGTTCTTTTTGACACAGAGGCAAGAACTGCATTGGCTTTTGTGACATTGAGGAAAGATGGAGAGAGGGAGTTCATGTTTTATAGAAACCCTAGTGCTGATATGTTACTGAAAGAATCTGAATTGAACATGGATATGATTAAGAATACAAAGATATTCCATTATGGATCCATTAGTCTTATTTCAGAACCATGTAGATCTGCTCATATGGCTGCCATGAAAGCTGCTAGAGAAGGTGGTGCTTTGTTGTCCTATGATCCAAATGTCAGGCTTCCTTTGTGGCCTTCTGCTGAGGCTGCTAGGTCTGGAATCAAAAGCATTTGGAATGAGGCTGATTTCATCAAGGTAAGTGATGATGAAGTTCAATTTCTTACACAAAAAGATCCTGAGAATGAAGAAGCTGTTATGTCTCTATGGCATGACAAGTTGAAGCTGCTTATTATCACTGATGGAGAGAAGGGTTGTAGATATGTCACTAAGAATTTTAAAGGAAGGGTAAGTGGGTTCTCAGTGAAGGCAATTGACACAACTGGTGCTGGTGATTCTTTTGTTGGTGCACTTCTCAGAGATGTGGCAAGAGACCCTTCTATATTTGGGGATGAACCAAAATTGAGAGAGACTTTAACATTTGCAAATGCTTGTGGAGCAATGTGTACAACACAGAAGGGAGCCATTCCTGCACTTCCAACTGCTGAAGAGGCTCAGAAATTTATTTCCAGCTCTAAAGCCAACTAA

Protein sequence

>Msa0078080

MSGSKDPLVISFGEMLIDFVPDTSGVSLAESYAFIKAPGGAPANVACAVSKLGGNAAFIGKVGDDEFGRMLADILKKNGVNTDGVLFDTEARTALAFVTLRKDGEREFMFYRNPSADMLLKESELNMDMIKNTKIFHYGSISLISEPCRSAHMAAMKAAREGGALLSYDPNVRLPLWPSAEAARSGIKSIWNEADFIKVSDDEVQFLTQKDPENEEAVMSLWHDKLKLLIITDGEKGCRYVTKNFKGRVSGFSVKAIDTTGAGDSFVGALLRDVARDPSIFGDEPKLRETLTFANACGAMCTTQKGAIPALPTAEEAQKFISSSKAN*