Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0466280 | GAU44153.1 | 63.402 | 194 | 53 | 6 | 8 | 183 | 169 | 362 | 3.88e-62 | 206 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0466280 | sp|F4K6X0|CHR42_ARATH | 62.963 | 81 | 27 | 2 | 103 | 181 | 38 | 117 | 5.94e-25 | 96.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0466280 | A0A2Z6NPY8 | 63.402 | 194 | 53 | 6 | 8 | 183 | 169 | 362 | 1.85e-62 | 206 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011720 | Msa0466280 | 0.822292 | 2.560789e-53 | -8.615850e-47 |
| Msa0012440 | Msa0466280 | 0.814045 | 1.881719e-51 | -8.615850e-47 |
| Msa0033340 | Msa0466280 | 0.801475 | 8.849961e-49 | -8.615850e-47 |
| Msa0055730 | Msa0466280 | 0.811341 | 7.350169e-51 | -8.615850e-47 |
| Msa0057240 | Msa0466280 | 0.808191 | 3.496697e-50 | -8.615850e-47 |
| Msa0120340 | Msa0466280 | 0.800620 | 1.323158e-48 | -8.615850e-47 |
| Msa0149560 | Msa0466280 | 0.809370 | 1.957064e-50 | -8.615850e-47 |
| Msa0173990 | Msa0466280 | 0.865307 | 6.494946e-65 | -8.615850e-47 |
| Msa0188630 | Msa0466280 | 0.803250 | 3.813390e-49 | -8.615850e-47 |
| Msa0205850 | Msa0466280 | 0.806193 | 9.263698e-50 | -8.615850e-47 |
| Msa0217400 | Msa0466280 | 0.811286 | 7.554649e-51 | -8.615850e-47 |
| Msa0219070 | Msa0466280 | 0.809172 | 2.157238e-50 | -8.615850e-47 |
| Msa0223380 | Msa0466280 | 0.807047 | 6.118029e-50 | -8.615850e-47 |
| Msa0235890 | Msa0466280 | 0.814710 | 1.341250e-51 | -8.615850e-47 |
| Msa0371810 | Msa0466280 | 0.967629 | 1.530155e-127 | -8.615850e-47 |
| Msa0377530 | Msa0466280 | 0.803718 | 3.049181e-49 | -8.615850e-47 |
| Msa0393950 | Msa0466280 | 0.810880 | 9.251728e-51 | -8.615850e-47 |
| Msa0426330 | Msa0466280 | 0.819649 | 1.039306e-52 | -8.615850e-47 |
| Msa0431670 | Msa0466280 | 0.810222 | 1.283466e-50 | -8.615850e-47 |
| Msa0442850 | Msa0466280 | 0.803859 | 2.850873e-49 | -8.615850e-47 |
| Msa0445280 | Msa0466280 | 0.826054 | 3.348542e-54 | -8.615850e-47 |
| Msa0452310 | Msa0466280 | 0.806196 | 9.249430e-50 | -8.615850e-47 |
| Msa0464900 | Msa0466280 | 0.812576 | 3.954479e-51 | -8.615850e-47 |
| Msa0466060 | Msa0466280 | 0.802732 | 4.878508e-49 | -8.615850e-47 |
| Msa0466220 | Msa0466280 | 0.868818 | 4.922280e-66 | -8.615850e-47 |
| Msa0466280 | Msa0466390 | 0.809188 | 2.141007e-50 | -8.615850e-47 |
| Msa0466280 | Msa0473240 | 0.835620 | 1.509430e-56 | -8.615850e-47 |
| Msa0466280 | Msa0480320 | 0.812691 | 3.731821e-51 | -8.615850e-47 |
| Msa0466280 | Msa0484780 | 0.840823 | 6.894681e-58 | -8.615850e-47 |
| Msa0466280 | Msa0517330 | 0.815673 | 8.196240e-52 | -8.615850e-47 |
| Msa0466280 | Msa0517490 | 0.812079 | 5.077235e-51 | -8.615850e-47 |
| Msa0466280 | Msa0526890 | 0.819029 | 1.439441e-52 | -8.615850e-47 |
| Msa0466280 | Msa0558690 | 0.809873 | 1.525975e-50 | -8.615850e-47 |
| Msa0466280 | Msa0577220 | 0.806267 | 8.935528e-50 | -8.615850e-47 |
| Msa0466280 | Msa0598460 | 0.817035 | 4.063058e-52 | -8.615850e-47 |
| Msa0466280 | Msa0621590 | 0.820679 | 6.038288e-53 | -8.615850e-47 |
| Msa0466280 | Msa0623080 | 0.803476 | 3.423007e-49 | -8.615850e-47 |
| Msa0466280 | Msa0638070 | 0.811373 | 7.231049e-51 | -8.615850e-47 |
| Msa0466280 | Msa0638280 | 0.812012 | 5.251209e-51 | -8.615850e-47 |
| Msa0466280 | Msa0638320 | 0.812473 | 4.164803e-51 | -8.615850e-47 |
| Msa0466280 | Msa0650900 | 0.801308 | 9.573114e-49 | -8.615850e-47 |
| Msa0466280 | Msa0677270 | 0.809851 | 1.542275e-50 | -8.615850e-47 |
| Msa0466280 | Msa0682550 | 0.806724 | 7.159547e-50 | -8.615850e-47 |
| Msa0466280 | Msa0693380 | 0.812658 | 3.795658e-51 | -8.615850e-47 |
| Msa0466280 | Msa0706370 | 0.804605 | 1.993386e-49 | -8.615850e-47 |
| Msa0466280 | Msa0739120 | 0.818869 | 1.564916e-52 | -8.615850e-47 |
| Msa0466280 | Msa0750350 | 0.800630 | 1.317248e-48 | -8.615850e-47 |
| Msa0466280 | Msa0757080 | 0.807375 | 5.211311e-50 | -8.615850e-47 |
| Msa0466280 | Msa0788710 | 0.831698 | 1.440478e-55 | -8.615850e-47 |
| Msa0466280 | Msa0860410 | 0.802820 | 4.679131e-49 | -8.615850e-47 |
| Msa0466280 | Msa0870620 | 0.836080 | 1.154124e-56 | -8.615850e-47 |
| Msa0466280 | Msa0870690 | 0.809151 | 2.180655e-50 | -8.615850e-47 |
| Msa0466280 | Msa0893810 | 0.807879 | 4.073521e-50 | -8.615850e-47 |
| Msa0466280 | Msa0907070 | 0.808048 | 3.749837e-50 | -8.615850e-47 |
| Msa0466280 | Msa0908170 | 0.804001 | 2.663890e-49 | -8.615850e-47 |
| Msa0466280 | Msa0960160 | 0.805266 | 1.450277e-49 | -8.615850e-47 |
| Msa0466280 | Msa0993530 | 0.803858 | 2.851690e-49 | -8.615850e-47 |
| Msa0466280 | Msa1026760 | 0.811308 | 7.470782e-51 | -8.615850e-47 |
| Msa0466280 | Msa1026790 | 0.813571 | 2.392914e-51 | -8.615850e-47 |
| Msa0466280 | Msa1027290 | 0.820175 | 7.880860e-53 | -8.615850e-47 |
| Msa0466280 | Msa1037700 | -0.810563 | 1.082991e-50 | -8.615850e-47 |
| Msa0466280 | Msa1046300 | 0.821771 | 3.382136e-53 | -8.615850e-47 |
| Msa0466280 | Msa1082500 | 0.835455 | 1.661227e-56 | -8.615850e-47 |
| Msa0466280 | Msa1085300 | 0.806111 | 9.640685e-50 | -8.615850e-47 |
| Msa0466280 | Msa1085920 | 0.814856 | 1.244787e-51 | -8.615850e-47 |
| Msa0466280 | Msa1130210 | -0.802322 | 5.927854e-49 | -8.615850e-47 |
| Msa0466280 | Msa1148130 | 0.808730 | 2.682221e-50 | -8.615850e-47 |
| Msa0466280 | Msa1171800 | 0.806019 | 1.007830e-49 | -8.615850e-47 |
| Msa0466280 | Msa1199560 | 0.828172 | 1.042142e-54 | -8.615850e-47 |
| Msa0466280 | Msa1233500 | 0.837741 | 4.347349e-57 | -8.615850e-47 |
| Msa0466280 | Msa1233890 | 0.826544 | 2.559311e-54 | -8.615850e-47 |
| Msa0466280 | Msa1275770 | 0.804736 | 1.871939e-49 | -8.615850e-47 |
| Msa0466280 | Msa1279210 | 0.805128 | 1.550228e-49 | -8.615850e-47 |
| Msa0466280 | Msa1314100 | 0.800120 | 1.672586e-48 | -8.615850e-47 |
| Msa0466280 | Msa1314340 | 0.817981 | 2.487447e-52 | -8.615850e-47 |
| Msa0466280 | Msa1328700 | 0.825938 | 3.567864e-54 | -8.615850e-47 |
| Msa0466280 | Msa1340650 | 0.810749 | 9.872975e-51 | -8.615850e-47 |
| Msa0466280 | Msa1351620 | 0.807675 | 4.502127e-50 | -8.615850e-47 |
| Msa0466280 | Msa1396830 | 0.803365 | 3.609687e-49 | -8.615850e-47 |
| Msa0466280 | Msa1408790 | 0.807019 | 6.200513e-50 | -8.615850e-47 |
| Msa0466280 | Msa1416390 | 0.814275 | 1.673784e-51 | -8.615850e-47 |
| Msa0466280 | Msa1429420 | 0.813040 | 3.130683e-51 | -8.615850e-47 |
| Msa0246430 | Msa0466280 | 0.815180 | 1.054934e-51 | -8.615850e-47 |
| Msa0258760 | Msa0466280 | 0.816415 | 5.594927e-52 | -8.615850e-47 |
| Msa0266000 | Msa0466280 | -0.807035 | 6.153246e-50 | -8.615850e-47 |
| Msa0270270 | Msa0466280 | 0.816975 | 4.190706e-52 | -8.615850e-47 |
| Msa0282250 | Msa0466280 | 0.805843 | 1.097833e-49 | -8.615850e-47 |
| Msa0284880 | Msa0466280 | 0.816946 | 4.253565e-52 | -8.615850e-47 |
| Msa0317510 | Msa0466280 | 0.805924 | 1.055556e-49 | -8.615850e-47 |
| Msa0323080 | Msa0466280 | 0.839850 | 1.238340e-57 | -8.615850e-47 |
| Msa0329320 | Msa0466280 | 0.802331 | 5.902159e-49 | -8.615850e-47 |
| Msa0335040 | Msa0466280 | 0.811477 | 6.864607e-51 | -8.615850e-47 |
| Msa0344830 | Msa0466280 | 0.801638 | 8.193030e-49 | -8.615850e-47 |
| Msa0344870 | Msa0466280 | 0.812380 | 4.365097e-51 | -8.615850e-47 |
| Msa0347360 | Msa0466280 | 0.811718 | 6.085095e-51 | -8.615850e-47 |
| Msa0350990 | Msa0466280 | 0.830385 | 3.025487e-55 | -8.615850e-47 |
| Msa0351030 | Msa0466280 | 0.828149 | 1.055258e-54 | -8.615850e-47 |
| Msa0351080 | Msa0466280 | 0.810290 | 1.240638e-50 | -8.615850e-47 |
| Msa0351100 | Msa0466280 | 0.815610 | 8.464008e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0466280 | MtrunA17_Chr3g0119011 | 65.625 | 128 | 35 | 4 | 64 | 183 | 2 | 128 | 5.55e-46 | 147 |
| Msa0466280 | MtrunA17_Chr3g0118991 | 94.915 | 59 | 3 | 0 | 125 | 183 | 1 | 59 | 8.07e-38 | 124 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0466280 | AT5G20935.1 | 62.963 | 81 | 27 | 2 | 103 | 181 | 38 | 117 | 6.03e-26 | 96.7 |
Find 35 sgRNAs with CRISPR-Local
Find 92 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCAAATCAACTGGAATATT+TGG | 0.198763 | 3_3:+66867965 | None:intergenic |
| ACGTTTGTACAAGCCAAAAT+TGG | 0.210526 | 3_3:+66867823 | None:intergenic |
| CTGTTGTGGAACATTGATTT+TGG | 0.228912 | 3_3:+66867991 | None:intergenic |
| TGGAGCTTCAATGATAATAA+TGG | 0.263065 | 3_3:+66867883 | None:intergenic |
| GCTATACTCAGCCATATCTA+AGG | 0.306717 | 3_3:+66867483 | None:intergenic |
| AAACGTTCAAAGTTGGATAA+AGG | 0.314200 | 3_3:-66867911 | Msa0466280:CDS |
| TCGGTTTATTGCCCCAATTT+TGG | 0.319384 | 3_3:-66867836 | Msa0466280:CDS |
| ATTGGAACTTATATTATTGA+TGG | 0.349289 | 3_3:-66867520 | Msa0466280:CDS |
| GGTCAAAACTGCAGCTAATT+CGG | 0.362866 | 3_3:-66867855 | Msa0466280:CDS |
| CGTTTGTACAAGCCAAAATT+GGG | 0.376043 | 3_3:+66867824 | None:intergenic |
| TTGGTGCCGACCTTCAAATA+TGG | 0.377926 | 3_3:+66868010 | None:intergenic |
| GGAGCTTCAATGATAATAAT+GGG | 0.378832 | 3_3:+66867884 | None:intergenic |
| ATATTTCAAGCCCTTAGATA+TGG | 0.400345 | 3_3:-66867494 | Msa0466280:CDS |
| AACGTTCAAAGTTGGATAAA+GGG | 0.431347 | 3_3:-66867910 | Msa0466280:CDS |
| CGTGACCTCAGCAAATCAAC+TGG | 0.460489 | 3_3:+66867956 | None:intergenic |
| TACCACCAAGCCATATTTGA+AGG | 0.463739 | 3_3:-66868020 | Msa0466280:CDS |
| TGGGCAGTGCGGCGCAGCAT+TGG | 0.466372 | 3_3:-66867538 | Msa0466280:CDS |
| TATCATTGAAGCTCCAAAGA+TGG | 0.502814 | 3_3:-66867876 | Msa0466280:CDS |
| CTTGGTGGTAGAGCAAGAAA+TGG | 0.514075 | 3_3:+66868033 | None:intergenic |
| GGAATATTTGGTATCTGTTG+TGG | 0.533879 | 3_3:+66867977 | None:intergenic |
| TCAATCCTATCATATGAATG+AGG | 0.535136 | 3_3:+66868211 | None:intergenic |
| CAATCCTATCATATGAATGA+GGG | 0.550534 | 3_3:+66868212 | None:intergenic |
| GACCTTCAAATATGGCTTGG+TGG | 0.555798 | 3_3:+66868018 | None:intergenic |
| GATAAAGTTATAAACAGTGT+AGG | 0.575222 | 3_3:-66868076 | Msa0466280:CDS |
| CTATACTCAGCCATATCTAA+GGG | 0.575354 | 3_3:+66867484 | None:intergenic |
| GCCGACCTTCAAATATGGCT+TGG | 0.578715 | 3_3:+66868015 | None:intergenic |
| ATATTCCAGTTGATTTGCTG+AGG | 0.581675 | 3_3:-66867961 | Msa0466280:CDS |
| TGAAGAGAAATCGTCACTGA+AGG | 0.602801 | 3_3:-66868110 | Msa0466280:CDS |
| ACCAAGCCATATTTGAAGGT+CGG | 0.616443 | 3_3:-66868016 | Msa0466280:CDS |
| TTGTACAAACGTGGTGATGT+TGG | 0.626789 | 3_3:-66867812 | Msa0466280:CDS |
| ATCCTATCATATGAATGAGG+GGG | 0.635069 | 3_3:+66868214 | None:intergenic |
| AATCCTATCATATGAATGAG+GGG | 0.646986 | 3_3:+66868213 | None:intergenic |
| ACAAACGTGGTGATGTTGGA+AGG | 0.684402 | 3_3:-66867808 | Msa0466280:intron |
| AAGAAGATGTGTGGGCAGTG+CGG | 0.684625 | 3_3:-66867549 | Msa0466280:CDS |
| GTTTGTACAAGCCAAAATTG+GGG | 0.698986 | 3_3:+66867825 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGTCTAAAGATTAATTAAT+TGG | + | chr3_3:66868029-66868048 | None:intergenic | 15.0% |
| !! | TTGTCTAAAGATTAATTAAT+TGG | + | chr3_3:66868029-66868048 | None:intergenic | 15.0% |
| !! | ATTGGAACTTATATTATTGA+TGG | - | chr3_3:66868189-66868208 | Msa0466280:CDS | 20.0% |
| !! | ATTGGAACTTATATTATTGA+TGG | - | chr3_3:66868189-66868208 | Msa0466280:CDS | 20.0% |
| ! | GATAAAGTTATAAACAGTGT+AGG | - | chr3_3:66867633-66867652 | Msa0466280:intron | 25.0% |
| ! | TGATGAAAAATTAAGAGATG+AGG | + | chr3_3:66867934-66867953 | None:intergenic | 25.0% |
| ! | GATAAAGTTATAAACAGTGT+AGG | - | chr3_3:66867633-66867652 | Msa0466280:intron | 25.0% |
| ! | TGATGAAAAATTAAGAGATG+AGG | + | chr3_3:66867934-66867953 | None:intergenic | 25.0% |
| AATCCTATCATATGAATGAG+GGG | + | chr3_3:66867499-66867518 | None:intergenic | 30.0% | |
| CAATCCTATCATATGAATGA+GGG | + | chr3_3:66867500-66867519 | None:intergenic | 30.0% | |
| TCAATCCTATCATATGAATG+AGG | + | chr3_3:66867501-66867520 | None:intergenic | 30.0% | |
| AGCAAATCAACTGGAATATT+TGG | + | chr3_3:66867747-66867766 | None:intergenic | 30.0% | |
| AAACGTTCAAAGTTGGATAA+AGG | - | chr3_3:66867798-66867817 | Msa0466280:intron | 30.0% | |
| AACGTTCAAAGTTGGATAAA+GGG | - | chr3_3:66867799-66867818 | Msa0466280:intron | 30.0% | |
| GGAGCTTCAATGATAATAAT+GGG | + | chr3_3:66867828-66867847 | None:intergenic | 30.0% | |
| TGGAGCTTCAATGATAATAA+TGG | + | chr3_3:66867829-66867848 | None:intergenic | 30.0% | |
| AAAAAAGCAAGAAGATGTGT+GGG | - | chr3_3:66868152-66868171 | Msa0466280:CDS | 30.0% | |
| ATATTTCAAGCCCTTAGATA+TGG | - | chr3_3:66868215-66868234 | Msa0466280:CDS | 30.0% | |
| AATCCTATCATATGAATGAG+GGG | + | chr3_3:66867499-66867518 | None:intergenic | 30.0% | |
| CAATCCTATCATATGAATGA+GGG | + | chr3_3:66867500-66867519 | None:intergenic | 30.0% | |
| TCAATCCTATCATATGAATG+AGG | + | chr3_3:66867501-66867520 | None:intergenic | 30.0% | |
| AGCAAATCAACTGGAATATT+TGG | + | chr3_3:66867747-66867766 | None:intergenic | 30.0% | |
| AAACGTTCAAAGTTGGATAA+AGG | - | chr3_3:66867798-66867817 | Msa0466280:intron | 30.0% | |
| AACGTTCAAAGTTGGATAAA+GGG | - | chr3_3:66867799-66867818 | Msa0466280:intron | 30.0% | |
| GGAGCTTCAATGATAATAAT+GGG | + | chr3_3:66867828-66867847 | None:intergenic | 30.0% | |
| TGGAGCTTCAATGATAATAA+TGG | + | chr3_3:66867829-66867848 | None:intergenic | 30.0% | |
| AAAAAAGCAAGAAGATGTGT+GGG | - | chr3_3:66868152-66868171 | Msa0466280:CDS | 30.0% | |
| ATATTTCAAGCCCTTAGATA+TGG | - | chr3_3:66868215-66868234 | Msa0466280:CDS | 30.0% | |
| ATCCTATCATATGAATGAGG+GGG | + | chr3_3:66867498-66867517 | None:intergenic | 35.0% | |
| !!! | CTGTTGTGGAACATTGATTT+TGG | + | chr3_3:66867721-66867740 | None:intergenic | 35.0% |
| GGAATATTTGGTATCTGTTG+TGG | + | chr3_3:66867735-66867754 | None:intergenic | 35.0% | |
| !! | ATATTCCAGTTGATTTGCTG+AGG | - | chr3_3:66867748-66867767 | Msa0466280:intron | 35.0% |
| ! | CGTTTTTCTTGCAACTCTTT+TGG | + | chr3_3:66867783-66867802 | None:intergenic | 35.0% |
| GCAAGAAAAACGTTCAAAGT+TGG | - | chr3_3:66867791-66867810 | Msa0466280:intron | 35.0% | |
| TATCATTGAAGCTCCAAAGA+TGG | - | chr3_3:66867833-66867852 | Msa0466280:CDS | 35.0% | |
| GTTTGTACAAGCCAAAATTG+GGG | + | chr3_3:66867887-66867906 | None:intergenic | 35.0% | |
| CGTTTGTACAAGCCAAAATT+GGG | + | chr3_3:66867888-66867907 | None:intergenic | 35.0% | |
| ACGTTTGTACAAGCCAAAAT+TGG | + | chr3_3:66867889-66867908 | None:intergenic | 35.0% | |
| !!! | AATTTTGGCTTGTACAAACG+TGG | - | chr3_3:66867888-66867907 | Msa0466280:CDS | 35.0% |
| GCAGTAGCAACTAATTGATT+TGG | - | chr3_3:66867985-66868004 | Msa0466280:CDS | 35.0% | |
| CAAAAAAGCAAGAAGATGTG+TGG | - | chr3_3:66868151-66868170 | Msa0466280:CDS | 35.0% | |
| CTATACTCAGCCATATCTAA+GGG | + | chr3_3:66868228-66868247 | None:intergenic | 35.0% | |
| ATCCTATCATATGAATGAGG+GGG | + | chr3_3:66867498-66867517 | None:intergenic | 35.0% | |
| !!! | CTGTTGTGGAACATTGATTT+TGG | + | chr3_3:66867721-66867740 | None:intergenic | 35.0% |
| GGAATATTTGGTATCTGTTG+TGG | + | chr3_3:66867735-66867754 | None:intergenic | 35.0% | |
| !! | ATATTCCAGTTGATTTGCTG+AGG | - | chr3_3:66867748-66867767 | Msa0466280:intron | 35.0% |
| ! | CGTTTTTCTTGCAACTCTTT+TGG | + | chr3_3:66867783-66867802 | None:intergenic | 35.0% |
| GCAAGAAAAACGTTCAAAGT+TGG | - | chr3_3:66867791-66867810 | Msa0466280:intron | 35.0% | |
| TATCATTGAAGCTCCAAAGA+TGG | - | chr3_3:66867833-66867852 | Msa0466280:CDS | 35.0% | |
| GTTTGTACAAGCCAAAATTG+GGG | + | chr3_3:66867887-66867906 | None:intergenic | 35.0% | |
| CGTTTGTACAAGCCAAAATT+GGG | + | chr3_3:66867888-66867907 | None:intergenic | 35.0% | |
| ACGTTTGTACAAGCCAAAAT+TGG | + | chr3_3:66867889-66867908 | None:intergenic | 35.0% | |
| !!! | AATTTTGGCTTGTACAAACG+TGG | - | chr3_3:66867888-66867907 | Msa0466280:CDS | 35.0% |
| GCAGTAGCAACTAATTGATT+TGG | - | chr3_3:66867985-66868004 | Msa0466280:CDS | 35.0% | |
| CAAAAAAGCAAGAAGATGTG+TGG | - | chr3_3:66868151-66868170 | Msa0466280:CDS | 35.0% | |
| CTATACTCAGCCATATCTAA+GGG | + | chr3_3:66868228-66868247 | None:intergenic | 35.0% | |
| ATATGAATGAGGGGGAAAGA+AGG | + | chr3_3:66867490-66867509 | None:intergenic | 40.0% | |
| TTCCCCCTCATTCATATGAT+AGG | - | chr3_3:66867493-66867512 | Msa0466280:CDS | 40.0% | |
| TGAAGAGAAATCGTCACTGA+AGG | - | chr3_3:66867599-66867618 | Msa0466280:intron | 40.0% | |
| TACCACCAAGCCATATTTGA+AGG | - | chr3_3:66867689-66867708 | Msa0466280:intron | 40.0% | |
| ACCAAGCCATATTTGAAGGT+CGG | - | chr3_3:66867693-66867712 | Msa0466280:intron | 40.0% | |
| GGTCAAAACTGCAGCTAATT+CGG | - | chr3_3:66867854-66867873 | Msa0466280:CDS | 40.0% | |
| ! | TCGGTTTATTGCCCCAATTT+TGG | - | chr3_3:66867873-66867892 | Msa0466280:CDS | 40.0% |
| ! | TTGTACAAACGTGGTGATGT+TGG | - | chr3_3:66867897-66867916 | Msa0466280:CDS | 40.0% |
| GCTATACTCAGCCATATCTA+AGG | + | chr3_3:66868229-66868248 | None:intergenic | 40.0% | |
| ATATGAATGAGGGGGAAAGA+AGG | + | chr3_3:66867490-66867509 | None:intergenic | 40.0% | |
| TTCCCCCTCATTCATATGAT+AGG | - | chr3_3:66867493-66867512 | Msa0466280:CDS | 40.0% | |
| TGAAGAGAAATCGTCACTGA+AGG | - | chr3_3:66867599-66867618 | Msa0466280:intron | 40.0% | |
| TACCACCAAGCCATATTTGA+AGG | - | chr3_3:66867689-66867708 | Msa0466280:intron | 40.0% | |
| ACCAAGCCATATTTGAAGGT+CGG | - | chr3_3:66867693-66867712 | Msa0466280:intron | 40.0% | |
| GGTCAAAACTGCAGCTAATT+CGG | - | chr3_3:66867854-66867873 | Msa0466280:CDS | 40.0% | |
| ! | TCGGTTTATTGCCCCAATTT+TGG | - | chr3_3:66867873-66867892 | Msa0466280:CDS | 40.0% |
| ! | TTGTACAAACGTGGTGATGT+TGG | - | chr3_3:66867897-66867916 | Msa0466280:CDS | 40.0% |
| GCTATACTCAGCCATATCTA+AGG | + | chr3_3:66868229-66868248 | None:intergenic | 40.0% | |
| ! | CTTGGTGGTAGAGCAAGAAA+TGG | + | chr3_3:66867679-66867698 | None:intergenic | 45.0% |
| ! | GACCTTCAAATATGGCTTGG+TGG | + | chr3_3:66867694-66867713 | None:intergenic | 45.0% |
| !! | TTGGTGCCGACCTTCAAATA+TGG | + | chr3_3:66867702-66867721 | None:intergenic | 45.0% |
| !! | GCTGCAGTTTTGACCATCTT+TGG | + | chr3_3:66867849-66867868 | None:intergenic | 45.0% |
| ! | ACAAACGTGGTGATGTTGGA+AGG | - | chr3_3:66867901-66867920 | Msa0466280:CDS | 45.0% |
| ! | CTTGGTGGTAGAGCAAGAAA+TGG | + | chr3_3:66867679-66867698 | None:intergenic | 45.0% |
| ! | GACCTTCAAATATGGCTTGG+TGG | + | chr3_3:66867694-66867713 | None:intergenic | 45.0% |
| !! | TTGGTGCCGACCTTCAAATA+TGG | + | chr3_3:66867702-66867721 | None:intergenic | 45.0% |
| !! | GCTGCAGTTTTGACCATCTT+TGG | + | chr3_3:66867849-66867868 | None:intergenic | 45.0% |
| ! | ACAAACGTGGTGATGTTGGA+AGG | - | chr3_3:66867901-66867920 | Msa0466280:CDS | 45.0% |
| GCCGACCTTCAAATATGGCT+TGG | + | chr3_3:66867697-66867716 | None:intergenic | 50.0% | |
| CGTGACCTCAGCAAATCAAC+TGG | + | chr3_3:66867756-66867775 | None:intergenic | 50.0% | |
| AAGAAGATGTGTGGGCAGTG+CGG | - | chr3_3:66868160-66868179 | Msa0466280:CDS | 50.0% | |
| GCCGACCTTCAAATATGGCT+TGG | + | chr3_3:66867697-66867716 | None:intergenic | 50.0% | |
| CGTGACCTCAGCAAATCAAC+TGG | + | chr3_3:66867756-66867775 | None:intergenic | 50.0% | |
| AAGAAGATGTGTGGGCAGTG+CGG | - | chr3_3:66868160-66868179 | Msa0466280:CDS | 50.0% | |
| TGGGCAGTGCGGCGCAGCAT+TGG | - | chr3_3:66868171-66868190 | Msa0466280:CDS | 70.0% | |
| TGGGCAGTGCGGCGCAGCAT+TGG | - | chr3_3:66868171-66868190 | Msa0466280:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 66867480 | 66868251 | 66867480 | ID=Msa0466280;Name=Msa0466280 |
| chr3_3 | mRNA | 66867480 | 66868251 | 66867480 | ID=Msa0466280-mRNA-1;Parent=Msa0466280;Name=Msa0466280-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|1|0|1|1|1|2|0|183 |
| chr3_3 | exon | 66867809 | 66868251 | 66867809 | ID=Msa0466280-mRNA-1:exon:15271;Parent=Msa0466280-mRNA-1 |
| chr3_3 | exon | 66867480 | 66867588 | 66867480 | ID=Msa0466280-mRNA-1:exon:15270;Parent=Msa0466280-mRNA-1 |
| chr3_3 | CDS | 66867809 | 66868251 | 66867809 | ID=Msa0466280-mRNA-1:cds;Parent=Msa0466280-mRNA-1 |
| chr3_3 | CDS | 66867480 | 66867588 | 66867480 | ID=Msa0466280-mRNA-1:cds;Parent=Msa0466280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
