Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0046370 | sp|B7SY83|PS1_ARATH | 34.055 | 508 | 235 | 18 | 780 | 1244 | 990 | 1440 | 1.13e-53 | 210 |
| Msa0046370 | sp|B7SY83|PS1_ARATH | 46.774 | 124 | 55 | 2 | 19 | 131 | 20 | 143 | 2.23e-26 | 121 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0020540 | Msa0046370 | 0.803761 | 2.988118e-49 | -8.615850e-47 |
| Msa0032980 | Msa0046370 | 0.807938 | 3.958013e-50 | -8.615850e-47 |
| Msa0046370 | Msa0062340 | 0.800050 | 1.728182e-48 | -8.615850e-47 |
| Msa0046370 | Msa0074360 | 0.811357 | 7.290122e-51 | -8.615850e-47 |
| Msa0046370 | Msa0091350 | 0.823606 | 1.265224e-53 | -8.615850e-47 |
| Msa0046370 | Msa0106630 | 0.800274 | 1.556624e-48 | -8.615850e-47 |
| Msa0046370 | Msa0127340 | 0.806587 | 7.649971e-50 | -8.615850e-47 |
| Msa0046370 | Msa0159590 | 0.819991 | 8.681234e-53 | -8.615850e-47 |
| Msa0046370 | Msa0177480 | 0.819361 | 1.209079e-52 | -8.615850e-47 |
| Msa0046370 | Msa0298580 | 0.800023 | 1.750262e-48 | -8.615850e-47 |
| Msa0046370 | Msa0368860 | 0.800581 | 1.347747e-48 | -8.615850e-47 |
| Msa0046370 | Msa0383000 | 0.813180 | 2.916925e-51 | -8.615850e-47 |
| Msa0046370 | Msa0421750 | 0.808786 | 2.609949e-50 | -8.615850e-47 |
| Msa0046370 | Msa0433150 | 0.800865 | 1.179252e-48 | -8.615850e-47 |
| Msa0046370 | Msa0433760 | 0.805832 | 1.103515e-49 | -8.615850e-47 |
| Msa0046370 | Msa0477630 | 0.813885 | 2.040927e-51 | -8.615850e-47 |
| Msa0046370 | Msa0521680 | 0.809190 | 2.138243e-50 | -8.615850e-47 |
| Msa0046370 | Msa0553750 | 0.801010 | 1.101321e-48 | -8.615850e-47 |
| Msa0046370 | Msa0554300 | 0.809622 | 1.727437e-50 | -8.615850e-47 |
| Msa0046370 | Msa0561560 | 0.804513 | 2.083920e-49 | -8.615850e-47 |
| Msa0046370 | Msa0577280 | 0.811163 | 8.033454e-51 | -8.615850e-47 |
| Msa0046370 | Msa0577330 | 0.811753 | 5.979954e-51 | -8.615850e-47 |
| Msa0046370 | Msa0606100 | 0.803908 | 2.784193e-49 | -8.615850e-47 |
| Msa0046370 | Msa0607800 | 0.808568 | 2.905675e-50 | -8.615850e-47 |
| Msa0046370 | Msa0608350 | 0.802033 | 6.795714e-49 | -8.615850e-47 |
| Msa0046370 | Msa0615630 | 0.814008 | 1.916862e-51 | -8.615850e-47 |
| Msa0046370 | Msa0620500 | 0.823535 | 1.314439e-53 | -8.615850e-47 |
| Msa0046370 | Msa0621710 | 0.813437 | 2.560299e-51 | -8.615850e-47 |
| Msa0046370 | Msa0622920 | 0.807885 | 4.062251e-50 | -8.615850e-47 |
| Msa0046370 | Msa0654740 | 0.802519 | 5.398681e-49 | -8.615850e-47 |
| Msa0046370 | Msa0690740 | 0.800682 | 1.285114e-48 | -8.615850e-47 |
| Msa0046370 | Msa0691270 | 0.807702 | 4.443221e-50 | -8.615850e-47 |
| Msa0046370 | Msa0698730 | 0.811261 | 7.647661e-51 | -8.615850e-47 |
| Msa0046370 | Msa0714520 | 0.818822 | 1.603815e-52 | -8.615850e-47 |
| Msa0046370 | Msa0722220 | 0.830268 | 3.232234e-55 | -8.615850e-47 |
| Msa0046370 | Msa0743440 | 0.804404 | 2.195501e-49 | -8.615850e-47 |
| Msa0046370 | Msa0745720 | 0.800075 | 1.708319e-48 | -8.615850e-47 |
| Msa0046370 | Msa0763550 | 0.814273 | 1.675831e-51 | -8.615850e-47 |
| Msa0046370 | Msa0789820 | 0.965640 | 7.230622e-125 | -8.615850e-47 |
| Msa0046370 | Msa0805680 | 0.807172 | 5.755294e-50 | -8.615850e-47 |
| Msa0046370 | Msa0816080 | 0.806119 | 9.601995e-50 | -8.615850e-47 |
| Msa0046370 | Msa0817200 | 0.806732 | 7.131021e-50 | -8.615850e-47 |
| Msa0046370 | Msa0863620 | 0.807021 | 6.194545e-50 | -8.615850e-47 |
| Msa0046370 | Msa0879920 | 0.811059 | 8.460282e-51 | -8.615850e-47 |
| Msa0046370 | Msa0924430 | 0.800211 | 1.603191e-48 | -8.615850e-47 |
| Msa0046370 | Msa0931590 | 0.827184 | 1.799358e-54 | -8.615850e-47 |
| Msa0046370 | Msa0989370 | 0.813423 | 2.578597e-51 | -8.615850e-47 |
| Msa0046370 | Msa1002640 | 0.813918 | 2.007275e-51 | -8.615850e-47 |
| Msa0046370 | Msa1127470 | 0.800313 | 1.528014e-48 | -8.615850e-47 |
| Msa0046370 | Msa1163180 | 0.806209 | 9.190406e-50 | -8.615850e-47 |
| Msa0046370 | Msa1165480 | 0.802023 | 6.830288e-49 | -8.615850e-47 |
| Msa0046370 | Msa1213830 | 0.819630 | 1.050011e-52 | -8.615850e-47 |
| Msa0046370 | Msa1214350 | 0.806295 | 8.815024e-50 | -8.615850e-47 |
| Msa0046370 | Msa1215980 | 0.824022 | 1.011059e-53 | -8.615850e-47 |
| Msa0046370 | Msa1252790 | 0.814165 | 1.770438e-51 | -8.615850e-47 |
| Msa0046370 | Msa1254540 | 0.823608 | 1.264065e-53 | -8.615850e-47 |
| Msa0046370 | Msa1261050 | 0.826232 | 3.037888e-54 | -8.615850e-47 |
| Msa0046370 | Msa1263740 | 0.819193 | 1.320485e-52 | -8.615850e-47 |
| Msa0046370 | Msa1263780 | 0.822781 | 1.971176e-53 | -8.615850e-47 |
| Msa0046370 | Msa1279120 | 0.811855 | 5.680811e-51 | -8.615850e-47 |
| Msa0046370 | Msa1294460 | 0.821143 | 4.722579e-53 | -8.615850e-47 |
| Msa0046370 | Msa1294790 | 0.802811 | 4.700365e-49 | -8.615850e-47 |
| Msa0046370 | Msa1300460 | 0.806928 | 6.482073e-50 | -8.615850e-47 |
| Msa0046370 | Msa1301820 | 0.809974 | 1.450980e-50 | -8.615850e-47 |
| Msa0046370 | Msa1332950 | 0.811821 | 5.778361e-51 | -8.615850e-47 |
| Msa0046370 | Msa1339170 | 0.823380 | 1.428821e-53 | -8.615850e-47 |
| Msa0046370 | Msa1387440 | 0.803499 | 3.385559e-49 | -8.615850e-47 |
| Msa0046370 | Msa1445120 | 0.805707 | 1.172212e-49 | -8.615850e-47 |
| Msa0046370 | Msa1450190 | 0.809190 | 2.138162e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0046370 | MtrunA17_Chr1g0200411 | 82.618 | 932 | 99 | 8 | 372 | 1258 | 264 | 1177 | 0.0 | 1401 |
| Msa0046370 | MtrunA17_Chr1g0200411 | 95.077 | 650 | 31 | 1 | 1 | 650 | 1 | 649 | 0.0 | 1177 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0046370 | AT1G34355.2 | 34.055 | 508 | 235 | 18 | 780 | 1244 | 985 | 1435 | 1.12e-54 | 210 |
| Msa0046370 | AT1G34355.2 | 46.774 | 124 | 55 | 2 | 19 | 131 | 20 | 143 | 2.22e-27 | 121 |
| Msa0046370 | AT1G34355.1 | 34.055 | 508 | 235 | 18 | 780 | 1244 | 990 | 1440 | 1.15e-54 | 210 |
| Msa0046370 | AT1G34355.1 | 46.774 | 124 | 55 | 2 | 19 | 131 | 20 | 143 | 2.26e-27 | 121 |
| Msa0046370 | AT1G34355.3 | 34.055 | 508 | 235 | 18 | 780 | 1244 | 831 | 1281 | 2.31e-54 | 208 |
| Msa0046370 | AT1G34355.3 | 46.774 | 124 | 55 | 2 | 19 | 131 | 20 | 143 | 2.35e-27 | 121 |
Find 245 sgRNAs with CRISPR-Local
Find 325 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGAAAACTAAGACTTAT+TGG | 0.182346 | 1_1:+78466732 | None:intergenic |
| AGTATTGATTTGTTGAAAAT+TGG | 0.204598 | 1_1:+78469685 | None:intergenic |
| AATATTGATTAGTTGAAAAT+TGG | 0.212674 | 1_1:+78468965 | None:intergenic |
| AATATTGATTAGTTGAAAAT+TGG | 0.212674 | 1_1:+78469205 | None:intergenic |
| AATATTGATTAGTTGAAAAT+TGG | 0.212674 | 1_1:+78469445 | None:intergenic |
| AAAGCAATGCATTGAAAATA+TGG | 0.230349 | 1_1:-78469885 | Msa0046370:CDS |
| GAAGATGAAAATGATTCTTT+TGG | 0.236793 | 1_1:-78470475 | Msa0046370:CDS |
| CTACAGAACATTGGTTCTTT+AGG | 0.237507 | 1_1:-78470541 | Msa0046370:intron |
| ATCCATTCTAGTGCTTCTTT+TGG | 0.250107 | 1_1:+78468027 | None:intergenic |
| AGGGATTGTTGTTGTTGATT+AGG | 0.255051 | 1_1:+78471576 | None:intergenic |
| ATTAGTTGAAAATTGGTTAC+AGG | 0.255411 | 1_1:+78468972 | None:intergenic |
| ATTAGTTGAAAATTGGTTAC+AGG | 0.255411 | 1_1:+78469212 | None:intergenic |
| ATTAGTTGAAAATTGGTTAC+AGG | 0.255411 | 1_1:+78469452 | None:intergenic |
| GTTTGATGAGATTCAGAATA+AGG | 0.265930 | 1_1:+78470061 | None:intergenic |
| CACTTCTTCTCTTCTGAATA+AGG | 0.267074 | 1_1:-78467640 | Msa0046370:CDS |
| CGATGATGTCGATGCATTAA+AGG | 0.273498 | 1_1:-78471088 | Msa0046370:intron |
| AGAAGATTGTTGGTGCAATT+TGG | 0.275522 | 1_1:+78470231 | None:intergenic |
| TTCTTGAAAACAGTTAATAC+TGG | 0.278511 | 1_1:+78471549 | None:intergenic |
| GATTCTAATTTGTGTTCTTT+TGG | 0.279328 | 1_1:+78469815 | None:intergenic |
| GAATCATCCTTCGGGGAAAA+AGG | 0.279531 | 1_1:-78470184 | Msa0046370:CDS |
| GGGATTGTTGTTGTTGATTA+GGG | 0.281399 | 1_1:+78471577 | None:intergenic |
| AAACAGTTAATACTGGGATT+AGG | 0.288143 | 1_1:+78471556 | None:intergenic |
| TTCAGAGGCTGCTTTGGCCT+TGG | 0.290659 | 1_1:-78467398 | Msa0046370:CDS |
| TCAGCTGCAAAATCCATTCT+TGG | 0.291872 | 1_1:-78467865 | Msa0046370:CDS |
| ATTCTTCTACACAGCTTTCA+TGG | 0.306045 | 1_1:+78468673 | None:intergenic |
| TTCCATTCATGTGCTTCTCT+TGG | 0.308587 | 1_1:+78468147 | None:intergenic |
| TGCTACTGTTGATTCGTTAT+CGG | 0.311243 | 1_1:-78469411 | Msa0046370:CDS |
| CCTTGGACTGCTTCCGCAAC+TGG | 0.314000 | 1_1:+78470256 | None:intergenic |
| AACAGTTAATACTGGGATTA+GGG | 0.315056 | 1_1:+78471557 | None:intergenic |
| CCCTTTGTGACTTCGGAGTC+TGG | 0.316232 | 1_1:+78468256 | None:intergenic |
| ATGCATCGACATCATCGAAT+TGG | 0.316310 | 1_1:+78471094 | None:intergenic |
| TCTCTTCTCGATTTATCTTC+TGG | 0.319617 | 1_1:-78471351 | Msa0046370:intron |
| CAATCTCTTGTTGCTGTGGC+TGG | 0.327577 | 1_1:-78468714 | Msa0046370:CDS |
| AGAAATGTTCACTCCAAATA+AGG | 0.327813 | 1_1:-78468448 | Msa0046370:CDS |
| CCTTCAAATTCAGATTCTTT+AGG | 0.328568 | 1_1:+78470139 | None:intergenic |
| CCTGCATCTTCTGAAGAAAA+TGG | 0.329906 | 1_1:-78469860 | Msa0046370:CDS |
| AAGAGGACGATATTGCAATT+TGG | 0.332627 | 1_1:+78471435 | None:intergenic |
| TTTGTCAGTCATAAGAGAAT+TGG | 0.333373 | 1_1:-78467458 | Msa0046370:intron |
| TGCTGCTGCTGATTCGTTAT+CGG | 0.346358 | 1_1:-78469651 | Msa0046370:CDS |
| CATCACAAGGTTTGATATTG+AGG | 0.347229 | 1_1:+78469585 | None:intergenic |
| AGAGGACGATATTGCAATTT+GGG | 0.350527 | 1_1:+78471436 | None:intergenic |
| TTAAAATAAGTTGGAGGAGT+TGG | 0.352861 | 1_1:+78467292 | None:intergenic |
| AACTAGTGAAGATGTGTTTC+CGG | 0.354802 | 1_1:+78469007 | None:intergenic |
| AACTAGTGAAGATGTGTTTC+CGG | 0.354802 | 1_1:+78469247 | None:intergenic |
| TTACAATCACTAATCAGTTC+TGG | 0.360096 | 1_1:-78467934 | Msa0046370:CDS |
| AAGGATTTCAGAGGCTGCTT+TGG | 0.362386 | 1_1:-78467404 | Msa0046370:CDS |
| CATGTGCTTCTCTTGGAGTC+AGG | 0.365094 | 1_1:+78468154 | None:intergenic |
| GGAAGCATGAAGCAACAAAT+TGG | 0.371153 | 1_1:-78467436 | Msa0046370:CDS |
| TCTTGAGTGTCGCAATACTA+TGG | 0.371876 | 1_1:-78467989 | Msa0046370:CDS |
| AGTGACTCAGGAAACTGATA+TGG | 0.380702 | 1_1:-78468769 | Msa0046370:CDS |
| TGAAATATGTCCACAATTGC+TGG | 0.387136 | 1_1:+78467828 | None:intergenic |
| GATGAAATAGTTGAAGATAT+TGG | 0.388156 | 1_1:-78469908 | Msa0046370:CDS |
| TTGATCCTGAATCATCCTTC+GGG | 0.392446 | 1_1:-78470192 | Msa0046370:CDS |
| TGTTTAATCATTCCACAATC+AGG | 0.392589 | 1_1:-78467573 | Msa0046370:intron |
| ATTCATCCTCCATTGAGCTT+TGG | 0.400341 | 1_1:+78467329 | None:intergenic |
| AGAACTGATTAGTGATTGTA+AGG | 0.403376 | 1_1:+78467936 | None:intergenic |
| CGGTGTGAGCGTTGATTTGA+AGG | 0.407297 | 1_1:-78471175 | Msa0046370:CDS |
| AAGTCAGAGAAAATATTCTT+TGG | 0.407767 | 1_1:+78468480 | None:intergenic |
| ATTTGTAATGAGTAATTTGA+AGG | 0.408606 | 1_1:-78468529 | Msa0046370:CDS |
| GTTGGTGCAATTTGGAGCCT+TGG | 0.409350 | 1_1:+78470239 | None:intergenic |
| TCATCAACTGATTGCGTGTA+AGG | 0.412265 | 1_1:+78470385 | None:intergenic |
| TCTCCCGGCATCTCCACTTC+GGG | 0.422287 | 1_1:+78470331 | None:intergenic |
| ATTGATCCTGAATCATCCTT+CGG | 0.423616 | 1_1:-78470193 | Msa0046370:CDS |
| TCTTCAGCTTCTTCTTCCAA+TGG | 0.426132 | 1_1:-78471625 | Msa0046370:exon |
| TTGTCAGTCATAAGAGAATT+GGG | 0.427807 | 1_1:-78467457 | Msa0046370:intron |
| CACATAAACCTCTCAGAGAA+AGG | 0.429699 | 1_1:+78466900 | None:intergenic |
| ACATCTTCATTAAAATAAGT+TGG | 0.431226 | 1_1:+78467283 | None:intergenic |
| GCTCAATGGAGGATGAATTC+AGG | 0.436316 | 1_1:-78467324 | Msa0046370:CDS |
| ACGAAAGAGGAGCTGGGACT+TGG | 0.438267 | 1_1:-78467670 | Msa0046370:CDS |
| CATTCTCTGAAGAAAATGAT+AGG | 0.440116 | 1_1:-78469793 | Msa0046370:CDS |
| AGGCTGCTTTGGCCTTGGAA+TGG | 0.440472 | 1_1:-78467393 | Msa0046370:CDS |
| CATCACAAGGTTTGACATAG+AGG | 0.445355 | 1_1:+78468865 | None:intergenic |
| CATCACAAGGTTTGACATAG+AGG | 0.445355 | 1_1:+78469105 | None:intergenic |
| CATCACAAGGTTTGACATAG+AGG | 0.445355 | 1_1:+78469345 | None:intergenic |
| TCTTTCAGCTGAATAGATGA+TGG | 0.445871 | 1_1:+78468086 | None:intergenic |
| TCTTTCAGCTGAATAGATGA+TGG | 0.445871 | 1_1:+78468206 | None:intergenic |
| TCTTTCAGCTGAATAGATGA+TGG | 0.445871 | 1_1:+78468308 | None:intergenic |
| GAAAATAAAACATTGGATGC+AGG | 0.447963 | 1_1:+78466662 | None:intergenic |
| TAAGGCTGCGAGTGCACCTC+AGG | 0.449836 | 1_1:-78468601 | Msa0046370:CDS |
| TTCGTTATCAAATGAAGAAA+AGG | 0.451064 | 1_1:-78468919 | Msa0046370:CDS |
| TTCGTTATCAAATGAAGAAA+AGG | 0.451064 | 1_1:-78469159 | Msa0046370:CDS |
| TAAATGTGACGTGGAGTTCA+AGG | 0.451089 | 1_1:-78469612 | Msa0046370:CDS |
| GATTGATTCGAATTTGAAGA+TGG | 0.451481 | 1_1:+78471391 | None:intergenic |
| TTATGTGCCCTTTGTGACTT+CGG | 0.452664 | 1_1:+78468249 | None:intergenic |
| AAGGGGATAGCTTTCAGCTT+GGG | 0.454413 | 1_1:-78471152 | Msa0046370:CDS |
| CCACAGCAACAAGAGATTGC+AGG | 0.457985 | 1_1:+78468718 | None:intergenic |
| TTAGAATATATTGTAACTAC+TGG | 0.459459 | 1_1:-78470112 | Msa0046370:CDS |
| TGCATCGACATCATCGAATT+GGG | 0.459575 | 1_1:+78471095 | None:intergenic |
| CTCTCCCGGCATCTCCACTT+CGG | 0.463114 | 1_1:+78470330 | None:intergenic |
| TGTGATATCTTACAGATGGC+TGG | 0.463668 | 1_1:+78467794 | None:intergenic |
| GAGAAAATATTCTTTGGCAT+TGG | 0.463918 | 1_1:+78468486 | None:intergenic |
| AGAAACTTCCTCGTCAGTAT+TGG | 0.464485 | 1_1:+78470039 | None:intergenic |
| TTCGTTATCGGATGAAGAAA+AGG | 0.465047 | 1_1:-78469399 | Msa0046370:CDS |
| CACAAAGATCACATAATTTG+AGG | 0.469059 | 1_1:-78468122 | Msa0046370:CDS |
| TGAATGTGATGAGGAGTTCA+AGG | 0.469592 | 1_1:-78468892 | Msa0046370:CDS |
| TGAATGTGATGAGGAGTTCA+AGG | 0.469592 | 1_1:-78469132 | Msa0046370:CDS |
| TGAATGTGATGAGGAGTTCA+AGG | 0.469592 | 1_1:-78469372 | Msa0046370:CDS |
| CAAATGTTTCATCATTAGAC+TGG | 0.470421 | 1_1:+78470497 | None:intergenic |
| GTGCAGAACGAAAGAGGAGC+TGG | 0.472569 | 1_1:-78467677 | Msa0046370:CDS |
| CTCCAAAAGAAGCACTAGAA+TGG | 0.474494 | 1_1:-78468029 | Msa0046370:CDS |
| TGCTGTTTGCCATCCAAGGC+GGG | 0.480383 | 1_1:-78466810 | Msa0046370:CDS |
| ACAAATTTAGTGTCAACATC+AGG | 0.480928 | 1_1:+78468546 | None:intergenic |
| ATTATGTGCCCTTTGTGACT+TGG | 0.481957 | 1_1:+78468350 | None:intergenic |
| GTGCACCTCAGGATCGAACT+TGG | 0.484676 | 1_1:-78468590 | Msa0046370:CDS |
| TTCGTTATCGGATGAAGAAA+AGG | 0.484888 | 1_1:-78469639 | Msa0046370:CDS |
| CTCCAAGAGAAGCACATGAA+TGG | 0.486333 | 1_1:-78468149 | Msa0046370:CDS |
| CCTAAAGAATCTGAATTTGA+AGG | 0.487483 | 1_1:-78470139 | Msa0046370:CDS |
| GAAGATGTGTTTCCGGATGA+AGG | 0.490548 | 1_1:+78469014 | None:intergenic |
| GAAGATGTGTTTCCGGATGA+AGG | 0.490548 | 1_1:+78469254 | None:intergenic |
| CTTTCTCTGAGAGGTTTATG+TGG | 0.496638 | 1_1:-78466899 | Msa0046370:CDS |
| ATTAAGTGACTTTGTCTGAA+AGG | 0.501365 | 1_1:+78469517 | None:intergenic |
| TGATGAAGAAGGCAGCTCAC+TGG | 0.504742 | 1_1:-78469087 | Msa0046370:CDS |
| TGATGAAGAAGGCAGCTCAC+TGG | 0.504742 | 1_1:-78469327 | Msa0046370:CDS |
| TCAGCTTGGGAGTTCAAGTA+GGG | 0.506969 | 1_1:-78471139 | Msa0046370:CDS |
| TTGTCCCGAAGTGGAGATGC+CGG | 0.507085 | 1_1:-78470335 | Msa0046370:CDS |
| GGCTGATGCTAGGGTGAAAG+AGG | 0.514469 | 1_1:+78471418 | None:intergenic |
| AAGCAATGCATTGAAAATAT+GGG | 0.516136 | 1_1:-78469884 | Msa0046370:CDS |
| GTGATATCTTACAGATGGCT+GGG | 0.516276 | 1_1:+78467795 | None:intergenic |
| GGCTTTGGCCTACAGAACAT+TGG | 0.516629 | 1_1:-78470550 | Msa0046370:intron |
| TGCGAGTGAAAGGTGTTTGT+GGG | 0.517986 | 1_1:+78468414 | None:intergenic |
| CTTTAGGTTGTGATGATGAA+AGG | 0.518310 | 1_1:-78470525 | Msa0046370:CDS |
| GAGTCACTTAATCCTTCATC+CGG | 0.518372 | 1_1:-78469026 | Msa0046370:CDS |
| GAGTCACTTAATCCTTCATC+CGG | 0.518372 | 1_1:-78469266 | Msa0046370:CDS |
| GAAGCACTAGAATGGATGTC+AGG | 0.520229 | 1_1:-78468021 | Msa0046370:CDS |
| GTGAGCGTTGATTTGAAGGA+AGG | 0.520468 | 1_1:-78471171 | Msa0046370:CDS |
| GTCAAACCTTGTGATGAAGA+AGG | 0.520624 | 1_1:-78468858 | Msa0046370:CDS |
| TTCGAATTTGAAGATGGAAA+CGG | 0.522729 | 1_1:+78471397 | None:intergenic |
| GTATTAGTGCAGAACGAAAG+AGG | 0.522828 | 1_1:-78467683 | Msa0046370:CDS |
| TCACAAGCAACAGTATTCAC+TGG | 0.525982 | 1_1:-78469930 | Msa0046370:CDS |
| TATAGAAGAAAAGATAATGT+TGG | 0.526463 | 1_1:-78467241 | Msa0046370:CDS |
| TATATTGAAGAGCACAATCA+AGG | 0.526917 | 1_1:+78467260 | None:intergenic |
| CTGCGAGTGAAAGGTGTTTG+TGG | 0.527257 | 1_1:+78468413 | None:intergenic |
| ACTTAATCCTTCAGTGACTC+AGG | 0.531278 | 1_1:-78468781 | Msa0046370:CDS |
| TCTGACAGTGACACCAAGAA+TGG | 0.531789 | 1_1:+78467852 | None:intergenic |
| AGAGAAACAGAGCAAGAAGA+AGG | 0.533263 | 1_1:+78471369 | None:intergenic |
| TCTGAATAAGGAGTCAAGAA+AGG | 0.534111 | 1_1:-78467628 | Msa0046370:CDS |
| AAGGCTTTGCAGCTTCTACA+AGG | 0.535155 | 1_1:-78467609 | Msa0046370:CDS |
| CAAAACAAATTAGTCTCTCC+CGG | 0.535363 | 1_1:+78470316 | None:intergenic |
| TCTTGAAAACAGTTAATACT+GGG | 0.538609 | 1_1:+78471550 | None:intergenic |
| ACAAAGATCACATAATTTGA+GGG | 0.539124 | 1_1:-78468121 | Msa0046370:CDS |
| AAGCAGCTTCAAACCCGCCT+TGG | 0.540005 | 1_1:+78466797 | None:intergenic |
| TTCAGCTTGGGAGTTCAAGT+AGG | 0.540418 | 1_1:-78471140 | Msa0046370:CDS |
| AGCTTCAAACCCGCCTTGGA+TGG | 0.540632 | 1_1:+78466801 | None:intergenic |
| CCTGCAATCTCTTGTTGCTG+TGG | 0.541394 | 1_1:-78468718 | Msa0046370:CDS |
| TTTCTCTGAGAGGTTTATGT+GGG | 0.541565 | 1_1:-78466898 | Msa0046370:CDS |
| AAAATAAAACATTGGATGCA+GGG | 0.542325 | 1_1:+78466663 | None:intergenic |
| TCTCATAAACTGCGAGTGAA+AGG | 0.542445 | 1_1:+78468404 | None:intergenic |
| ATCAAACCTTGTGATGAAGA+AGG | 0.542929 | 1_1:-78469578 | Msa0046370:CDS |
| TCGCAGTTTATGAGAAAGAA+AGG | 0.543292 | 1_1:-78468396 | Msa0046370:CDS |
| TAAAAGTTCCAAGTCACAAA+GGG | 0.544034 | 1_1:-78468358 | Msa0046370:CDS |
| GTCAAACCTTGTGATGAAGA+AGG | 0.544666 | 1_1:-78469098 | Msa0046370:CDS |
| GTCAAACCTTGTGATGAAGA+AGG | 0.544666 | 1_1:-78469338 | Msa0046370:CDS |
| GATTCATATCCAAAGCTCAA+TGG | 0.546480 | 1_1:-78467338 | Msa0046370:CDS |
| CAGGGATGTTAAAACTTGAA+AGG | 0.547311 | 1_1:+78466681 | None:intergenic |
| GAATGGATTGAAGAATGCAT+AGG | 0.549446 | 1_1:-78467376 | Msa0046370:CDS |
| GAGCGTTGATTTGAAGGAAG+GGG | 0.549670 | 1_1:-78471169 | Msa0046370:CDS |
| TCTGTGGATTCACTATCTGA+TGG | 0.551969 | 1_1:-78470019 | Msa0046370:CDS |
| CTCTTCCAAGTTCGATCCTG+AGG | 0.552493 | 1_1:+78468585 | None:intergenic |
| CTTTCAGCTGAATAGATGAT+GGG | 0.553266 | 1_1:+78468087 | None:intergenic |
| CTTTCAGCTGAATAGATGAT+GGG | 0.553266 | 1_1:+78468207 | None:intergenic |
| CTTTCAGCTGAATAGATGAT+GGG | 0.553266 | 1_1:+78468309 | None:intergenic |
| CCCTTAAAACCACATCATCT+CGG | 0.553361 | 1_1:+78466841 | None:intergenic |
| ATATTGCTGTTTGCCATCCA+AGG | 0.553553 | 1_1:-78466814 | Msa0046370:CDS |
| TCATTATTAGTACCTGATTG+TGG | 0.553792 | 1_1:+78467561 | None:intergenic |
| TTATTGAATGTGCTAATGTA+AGG | 0.554262 | 1_1:+78466615 | None:intergenic |
| AGATGGAAACGGCTGATGCT+AGG | 0.554477 | 1_1:+78471408 | None:intergenic |
| ACAAAGGGCACATAATTTGA+AGG | 0.555737 | 1_1:-78468241 | Msa0046370:CDS |
| ACAAAGGGCACATAATTTGA+AGG | 0.555737 | 1_1:-78468343 | Msa0046370:CDS |
| CAACTTGAAAATCAAATCCA+TGG | 0.556119 | 1_1:-78467191 | Msa0046370:CDS |
| TGAGCGTTGATTTGAAGGAA+GGG | 0.557220 | 1_1:-78471170 | Msa0046370:CDS |
| CACAGCAACAAGAGATTGCA+GGG | 0.558568 | 1_1:+78468719 | None:intergenic |
| AATGGATTGAAGAATGCATA+GGG | 0.559809 | 1_1:-78467375 | Msa0046370:CDS |
| AGTTGACATCATCACTAAGA+AGG | 0.560103 | 1_1:+78467209 | None:intergenic |
| TGTCCCGAAGTGGAGATGCC+GGG | 0.561554 | 1_1:-78470334 | Msa0046370:CDS |
| GAAGGGGATAGCTTTCAGCT+TGG | 0.561678 | 1_1:-78471153 | Msa0046370:CDS |
| GAGCTGCCTTCTTCATCACA+AGG | 0.561745 | 1_1:+78469092 | None:intergenic |
| GAGCTGCCTTCTTCATCACA+AGG | 0.561745 | 1_1:+78469332 | None:intergenic |
| AGGCGACGGTGCTGTGGATG+AGG | 0.561961 | 1_1:-78470164 | Msa0046370:CDS |
| GAAACGACAATTGAAGCCAT+TGG | 0.562412 | 1_1:+78471609 | None:intergenic |
| GTAATGAAATACCTTTGCCA+TGG | 0.562764 | 1_1:+78467174 | None:intergenic |
| GCTCTCCTCGAGGACTGACT+TGG | 0.566083 | 1_1:-78466869 | Msa0046370:CDS |
| GCATTCTTCAATCCATTCCA+AGG | 0.566592 | 1_1:+78467381 | None:intergenic |
| ATTAAGTGACTCTGTCTGAA+AGG | 0.568185 | 1_1:+78468797 | None:intergenic |
| ATTAAGTGACTCTGTCTGAA+AGG | 0.568185 | 1_1:+78469037 | None:intergenic |
| ATTAAGTGACTCTGTCTGAA+AGG | 0.568185 | 1_1:+78469277 | None:intergenic |
| CCAGACTCCGAAGTCACAAA+GGG | 0.569092 | 1_1:-78468256 | Msa0046370:CDS |
| TGAGGATGATGATGTTCTTG+AGG | 0.572319 | 1_1:+78471517 | None:intergenic |
| ACATAAACCTCTCAGAGAAA+GGG | 0.573006 | 1_1:+78466901 | None:intergenic |
| ATAAACTGAAAATAAAACAT+TGG | 0.574826 | 1_1:+78466655 | None:intergenic |
| GAAAATCAAATCCATGGCAA+AGG | 0.575168 | 1_1:-78467185 | Msa0046370:intron |
| ACTGTCAGATCCAGCAATTG+TGG | 0.576445 | 1_1:-78467838 | Msa0046370:CDS |
| ATAGTATTGCGACACTCAAG+AGG | 0.576921 | 1_1:+78467991 | None:intergenic |
| GATGGAAACGGCTGATGCTA+GGG | 0.577714 | 1_1:+78471409 | None:intergenic |
| TCTTCATTAAAATAAGTTGG+AGG | 0.578590 | 1_1:+78467286 | None:intergenic |
| TTGACAAAATATCACTACCA+AGG | 0.583571 | 1_1:+78468631 | None:intergenic |
| TGACAAAATATCACTACCAA+GGG | 0.584442 | 1_1:+78468632 | None:intergenic |
| AGGTTGTGATGATGAAAGGA+AGG | 0.584831 | 1_1:-78470521 | Msa0046370:CDS |
| AGCAAGAGTCTTTAATTCTG+AGG | 0.587680 | 1_1:-78470089 | Msa0046370:CDS |
| ACTGAGACATCATGTTGTAA+TGG | 0.588049 | 1_1:-78470451 | Msa0046370:CDS |
| TCAGTTTCCTGAGTCACTGA+AGG | 0.588129 | 1_1:+78468774 | None:intergenic |
| TACTGACGAGGAAGTTTCTG+TGG | 0.588152 | 1_1:-78470035 | Msa0046370:CDS |
| GGAATTAAGAAAGAAGAGAG+TGG | 0.590192 | 1_1:-78467968 | Msa0046370:CDS |
| TAGTGAACCCTTTCTCTGAG+AGG | 0.591206 | 1_1:-78466908 | Msa0046370:CDS |
| AAACATATGTATTCCAGTTG+CGG | 0.592569 | 1_1:-78470269 | Msa0046370:CDS |
| GTAGAGGGAAGCTTAACCCT+TGG | 0.597107 | 1_1:-78468648 | Msa0046370:CDS |
| TTGGTCTTGCCGAGATGATG+TGG | 0.598782 | 1_1:-78466850 | Msa0046370:CDS |
| GGGTGAAGCTTGTCCCGAAG+TGG | 0.599537 | 1_1:-78470344 | Msa0046370:CDS |
| AAAGGAAAATGAATGTGATG+AGG | 0.600290 | 1_1:-78468901 | Msa0046370:CDS |
| AAAGGAAAATGAATGTGATG+AGG | 0.600290 | 1_1:-78469141 | Msa0046370:CDS |
| AAAGGAAAATGAATGTGATG+AGG | 0.600290 | 1_1:-78469381 | Msa0046370:CDS |
| GAGTTACCTTCTTCATCACA+AGG | 0.605119 | 1_1:+78468852 | None:intergenic |
| GAGTTACCTTCTTCATCACA+AGG | 0.605119 | 1_1:+78469572 | None:intergenic |
| GTGGTACAGTGCATGGAACG+TGG | 0.605563 | 1_1:-78471221 | Msa0046370:intron |
| CTGTGTAGAAGAATCAGTAG+AGG | 0.605621 | 1_1:-78468664 | Msa0046370:CDS |
| TGAAGCTGATAACATGCAGA+TGG | 0.610016 | 1_1:-78470365 | Msa0046370:CDS |
| TAAGAAAGAAGAGAGTGGAA+CGG | 0.612306 | 1_1:-78467963 | Msa0046370:CDS |
| CCAGTTGCGGAAGCAGTCCA+AGG | 0.613914 | 1_1:-78470256 | Msa0046370:CDS |
| TGTGTAGAAGAATCAGTAGA+GGG | 0.614528 | 1_1:-78468663 | Msa0046370:CDS |
| GTAAAAGTTCCAAGTCACAA+AGG | 0.617712 | 1_1:-78468359 | Msa0046370:CDS |
| TGCGGTAGAAAGCTTGAGCA+CGG | 0.620433 | 1_1:-78471195 | Msa0046370:CDS |
| ACCAGACTCCGAAGTCACAA+AGG | 0.621726 | 1_1:-78468257 | Msa0046370:CDS |
| GATGATCAAATCCTCCTCGT+TGG | 0.621778 | 1_1:-78471465 | Msa0046370:CDS |
| TGCAGAACGAAAGAGGAGCT+GGG | 0.623266 | 1_1:-78467676 | Msa0046370:CDS |
| TGATGAAGAAGGTAACTCAC+TGG | 0.624546 | 1_1:-78469567 | Msa0046370:CDS |
| AGCTTCTACAAGGTCTCAAG+AGG | 0.631225 | 1_1:-78467599 | Msa0046370:CDS |
| CAATCACTAATCAGTTCTGG+AGG | 0.638402 | 1_1:-78467931 | Msa0046370:CDS |
| AATGCATAGGGAAGACAAAG+TGG | 0.644872 | 1_1:-78467363 | Msa0046370:CDS |
| TTGCTGTTTGCCATCCAAGG+CGG | 0.648855 | 1_1:-78466811 | Msa0046370:CDS |
| TCATATCCAAAGCTCAATGG+AGG | 0.659133 | 1_1:-78467335 | Msa0046370:CDS |
| GAACTGATTAGTGATTGTAA+GGG | 0.660725 | 1_1:+78467937 | None:intergenic |
| GTGCATGGAACGTGGGTGTG+CGG | 0.667960 | 1_1:-78471213 | Msa0046370:CDS |
| TCAACTGATTGCGTGTAAGG+TGG | 0.672318 | 1_1:+78470388 | None:intergenic |
| GCATAGGGAAGACAAAGTGG+TGG | 0.672552 | 1_1:-78467360 | Msa0046370:CDS |
| GAAGCTGATAACATGCAGAT+GGG | 0.679916 | 1_1:-78470364 | Msa0046370:CDS |
| TTGGGTGTCGACCAACGAGG+AGG | 0.683925 | 1_1:+78471454 | None:intergenic |
| ATTGCACCAACAATCTTCTG+CGG | 0.685341 | 1_1:-78470227 | Msa0046370:CDS |
| AAAGGAAAATAAATGTGACG+TGG | 0.686635 | 1_1:-78469621 | Msa0046370:CDS |
| AATGGTGAAAATAAACTCTG+TGG | 0.690486 | 1_1:-78470433 | Msa0046370:CDS |
| TGGTACAGTGCATGGAACGT+GGG | 0.693062 | 1_1:-78471220 | Msa0046370:intron |
| TGATCCTGAATCATCCTTCG+GGG | 0.698263 | 1_1:-78470191 | Msa0046370:CDS |
| GCGAGTGAAAGGTGTTTGTG+GGG | 0.700346 | 1_1:+78468415 | None:intergenic |
| CAAGACCAAGTCAGTCCTCG+AGG | 0.702653 | 1_1:+78466864 | None:intergenic |
| TCATCAAACCAATACTGACG+AGG | 0.704129 | 1_1:-78470047 | Msa0046370:CDS |
| TGGGCTAACAGCTCTCCTCG+AGG | 0.715866 | 1_1:-78466879 | Msa0046370:CDS |
| AATTTGGGTGTCGACCAACG+AGG | 0.791626 | 1_1:+78471451 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAAATAGTTTAGTTTTTA+AGG | - | chr1_1:78467564-78467583 | Msa0046370:intron | 10.0% |
| !! | AGGAAAAAAAAAGATAAAAA+GGG | + | chr1_1:78466969-78466988 | None:intergenic | 15.0% |
| !! | AAGGAAAAAAAAAGATAAAA+AGG | + | chr1_1:78466970-78466989 | None:intergenic | 15.0% |
| !! | AAAGAATATTCAAAAAAGAA+AGG | + | chr1_1:78466989-78467008 | None:intergenic | 15.0% |
| !! | AAAAAGAATAACAAATGAAA+AGG | + | chr1_1:78467012-78467031 | None:intergenic | 15.0% |
| !!! | TTTCATTTGTTATTCTTTTT+TGG | - | chr1_1:78467012-78467031 | Msa0046370:intron | 15.0% |
| !!! | AATATTGATTAGTTGAAAAT+TGG | + | chr1_1:78468838-78468857 | None:intergenic | 15.0% |
| !!! | AATATTGATTAGTTGAAAAT+TGG | + | chr1_1:78468838-78468857 | None:intergenic | 15.0% |
| !!! | AATATTGATTAGTTGAAAAT+TGG | + | chr1_1:78468838-78468857 | None:intergenic | 15.0% |
| !! | ATAAACTGAAAATAAAACAT+TGG | + | chr1_1:78471628-78471647 | None:intergenic | 15.0% |
| !! | GGAAAAAAAAAGATAAAAAG+GGG | + | chr1_1:78466968-78466987 | None:intergenic | 20.0% |
| !!! | TTTTACTCTTTTTTCAATTC+TGG | - | chr1_1:78467402-78467421 | Msa0046370:CDS | 20.0% |
| !!! | TTTACTCTTTTTTCAATTCT+GGG | - | chr1_1:78467403-78467422 | Msa0046370:CDS | 20.0% |
| !!! | TTTTTTTTTTGACCAATCTT+TGG | - | chr1_1:78467683-78467702 | Msa0046370:CDS | 20.0% |
| !!! | TTGTTTTTCTCTTTATCTTT+TGG | - | chr1_1:78467709-78467728 | Msa0046370:intron | 20.0% |
| !! | TTAGAATATATTGTAACTAC+TGG | - | chr1_1:78468168-78468187 | Msa0046370:CDS | 20.0% |
| !!! | AGTATTGATTTGTTGAAAAT+TGG | + | chr1_1:78468598-78468617 | None:intergenic | 20.0% |
| !! | ATTTGTAATGAGTAATTTGA+AGG | - | chr1_1:78469751-78469770 | Msa0046370:CDS | 20.0% |
| !! | AGCAATAAGCATATATAAAA+AGG | + | chr1_1:78470555-78470574 | None:intergenic | 20.0% |
| !!! | AACAAATTGGAATTTTTAGA+AGG | - | chr1_1:78470857-78470876 | Msa0046370:intron | 20.0% |
| !! | ACATCTTCATTAAAATAAGT+TGG | + | chr1_1:78471000-78471019 | None:intergenic | 20.0% |
| !! | TATAGAAGAAAAGATAATGT+TGG | - | chr1_1:78471039-78471058 | Msa0046370:intron | 20.0% |
| !! | AAATGAAAACTAAGACTTAT+TGG | + | chr1_1:78471551-78471570 | None:intergenic | 20.0% |
| ! | TCTTGAAAACAGTTAATACT+GGG | + | chr1_1:78466733-78466752 | None:intergenic | 25.0% |
| ! | TTCTTGAAAACAGTTAATAC+TGG | + | chr1_1:78466734-78466753 | None:intergenic | 25.0% |
| !!! | ATTCTTTTTTGGAATCTTGA+TGG | - | chr1_1:78467023-78467042 | Msa0046370:intron | 25.0% |
| !!! | TTCTTTTTTGGAATCTTGAT+GGG | - | chr1_1:78467024-78467043 | Msa0046370:intron | 25.0% |
| !! | TTTTCAATTCTGGGTTTAAT+TGG | - | chr1_1:78467412-78467431 | Msa0046370:CDS | 25.0% |
| !!! | TGTCCATTTTTATTCAATTC+TGG | - | chr1_1:78467492-78467511 | Msa0046370:intron | 25.0% |
| !!! | GTCCATTTTTATTCAATTCT+GGG | - | chr1_1:78467493-78467512 | Msa0046370:intron | 25.0% |
| ! | AACCCAGAATTGAATAAAAA+TGG | + | chr1_1:78467498-78467517 | None:intergenic | 25.0% |
| !! | TAGAATTTTGTGAGTTACAT+AGG | - | chr1_1:78467522-78467541 | Msa0046370:intron | 25.0% |
| !!! | TATTGTTGTTTACAAGTTTG+AGG | - | chr1_1:78467587-78467606 | Msa0046370:CDS | 25.0% |
| ! | ACAATGTTTGATGTTATCTT+TGG | - | chr1_1:78467657-78467676 | Msa0046370:CDS | 25.0% |
| ! | GAAAAACAAAAACCAAAGAT+TGG | + | chr1_1:78467698-78467717 | None:intergenic | 25.0% |
| !! | GAAGATGAAAATGATTCTTT+TGG | - | chr1_1:78467805-78467824 | Msa0046370:intron | 25.0% |
| !!! | TAATTTGTTTTGCACATTGA+GGG | - | chr1_1:78467975-78467994 | Msa0046370:CDS | 25.0% |
| ! | GATGAAATAGTTGAAGATAT+TGG | - | chr1_1:78468372-78468391 | Msa0046370:CDS | 25.0% |
| ! | AAAGCAATGCATTGAAAATA+TGG | - | chr1_1:78468395-78468414 | Msa0046370:CDS | 25.0% |
| ! | AAGCAATGCATTGAAAATAT+GGG | - | chr1_1:78468396-78468415 | Msa0046370:CDS | 25.0% |
| !!! | GATTCTAATTTGTGTTCTTT+TGG | + | chr1_1:78468468-78468487 | None:intergenic | 25.0% |
| !! | AACTAGTGAATATGTGTTTT+CGG | + | chr1_1:78468796-78468815 | None:intergenic | 25.0% |
| ! | ATTAGTTGAAAATTGGTTAC+AGG | + | chr1_1:78468831-78468850 | None:intergenic | 25.0% |
| ! | ATTAGTTGAAAATTGGTTAC+AGG | + | chr1_1:78468831-78468850 | None:intergenic | 25.0% |
| ! | TTCGTTATCAAATGAAGAAA+AGG | - | chr1_1:78469121-78469140 | Msa0046370:CDS | 25.0% |
| ! | ATTAGTTGAAAATTGGTTAC+AGG | + | chr1_1:78468831-78468850 | None:intergenic | 25.0% |
| ! | TTCGTTATCAAATGAAGAAA+AGG | - | chr1_1:78469121-78469140 | Msa0046370:CDS | 25.0% |
| !! | TATTTTGTCAAGAAGAGATA+AGG | - | chr1_1:78469661-78469680 | Msa0046370:CDS | 25.0% |
| ! | AAGTCAGAGAAAATATTCTT+TGG | + | chr1_1:78469803-78469822 | None:intergenic | 25.0% |
| !! | AAAGAATATTTTCTCTGACT+TGG | - | chr1_1:78469802-78469821 | Msa0046370:CDS | 25.0% |
| ! | ACAAAGATCACATAATTTGA+GGG | - | chr1_1:78470159-78470178 | Msa0046370:CDS | 25.0% |
| ! | TATTTGTGATATCTTACAGA+TGG | + | chr1_1:78470493-78470512 | None:intergenic | 25.0% |
| !!! | AATGTTGATGCTTTTGAAAT+TGG | - | chr1_1:78470781-78470800 | Msa0046370:intron | 25.0% |
| !!! | AATTTTTAGAAGGATTTCAG+AGG | - | chr1_1:78470867-78470886 | Msa0046370:intron | 25.0% |
| !! | TCTTCATTAAAATAAGTTGG+AGG | + | chr1_1:78470997-78471016 | None:intergenic | 25.0% |
| !!! | TTTTTTTAAAAACTGCTGCA+GGG | - | chr1_1:78471311-78471330 | Msa0046370:intron | 25.0% |
| ! | AAAATAAAACATTGGATGCA+GGG | + | chr1_1:78471620-78471639 | None:intergenic | 25.0% |
| AACAGTTAATACTGGGATTA+GGG | + | chr1_1:78466726-78466745 | None:intergenic | 30.0% | |
| AAACAGTTAATACTGGGATT+AGG | + | chr1_1:78466727-78466746 | None:intergenic | 30.0% | |
| ! | TATTGTTGTTGTTGTTGTTG+AGG | + | chr1_1:78466784-78466803 | None:intergenic | 30.0% |
| TTCGAATTTGAAGATGGAAA+CGG | + | chr1_1:78466886-78466905 | None:intergenic | 30.0% | |
| !! | GATTGATTCGAATTTGAAGA+TGG | + | chr1_1:78466892-78466911 | None:intergenic | 30.0% |
| TTGTGTGAATTGTGATAGTT+AGG | - | chr1_1:78467437-78467456 | Msa0046370:CDS | 30.0% | |
| TGTGTGAATTGTGATAGTTA+GGG | - | chr1_1:78467438-78467457 | Msa0046370:CDS | 30.0% | |
| !!! | TTCTCTTTATCTTTTGGCTT+TGG | - | chr1_1:78467715-78467734 | Msa0046370:intron | 30.0% |
| CAAATGTTTCATCATTAGAC+TGG | + | chr1_1:78467786-78467805 | None:intergenic | 30.0% | |
| AATGGTGAAAATAAACTCTG+TGG | - | chr1_1:78467847-78467866 | Msa0046370:CDS | 30.0% | |
| !!! | CTAATTTGTTTTGCACATTG+AGG | - | chr1_1:78467974-78467993 | Msa0046370:CDS | 30.0% |
| AAACATATGTATTCCAGTTG+CGG | - | chr1_1:78468011-78468030 | Msa0046370:CDS | 30.0% | |
| CCTTCAAATTCAGATTCTTT+AGG | + | chr1_1:78468144-78468163 | None:intergenic | 30.0% | |
| CCTAAAGAATCTGAATTTGA+AGG | - | chr1_1:78468141-78468160 | Msa0046370:CDS | 30.0% | |
| GTTTGATGAGATTCAGAATA+AGG | + | chr1_1:78468222-78468241 | None:intergenic | 30.0% | |
| ! | CATTCTCTGAAGAAAATGAT+AGG | - | chr1_1:78468487-78468506 | Msa0046370:CDS | 30.0% |
| !!! | TGACGATATTTTAACTAGTG+TGG | - | chr1_1:78468512-78468531 | Msa0046370:CDS | 30.0% |
| AAAGGAAAATAAATGTGACG+TGG | - | chr1_1:78468659-78468678 | Msa0046370:CDS | 30.0% | |
| ATTAAGTGACTTTGTCTGAA+AGG | + | chr1_1:78468766-78468785 | None:intergenic | 30.0% | |
| AAAGGAAAATGAATGTGATG+AGG | - | chr1_1:78468899-78468918 | Msa0046370:CDS | 30.0% | |
| AAAGGAAAATGAATGTGATG+AGG | - | chr1_1:78468899-78468918 | Msa0046370:CDS | 30.0% | |
| AAAGGAAAATGAATGTGATG+AGG | - | chr1_1:78468899-78468918 | Msa0046370:CDS | 30.0% | |
| TGACAAAATATCACTACCAA+GGG | + | chr1_1:78469651-78469670 | None:intergenic | 30.0% | |
| TTGACAAAATATCACTACCA+AGG | + | chr1_1:78469652-78469671 | None:intergenic | 30.0% | |
| ACAAATTTAGTGTCAACATC+AGG | + | chr1_1:78469737-78469756 | None:intergenic | 30.0% | |
| GAGAAAATATTCTTTGGCAT+TGG | + | chr1_1:78469797-78469816 | None:intergenic | 30.0% | |
| AGAAATGTTCACTCCAAATA+AGG | - | chr1_1:78469832-78469851 | Msa0046370:CDS | 30.0% | |
| TAAAAGTTCCAAGTCACAAA+GGG | - | chr1_1:78469922-78469941 | Msa0046370:CDS | 30.0% | |
| CACAAAGATCACATAATTTG+AGG | - | chr1_1:78470158-78470177 | Msa0046370:CDS | 30.0% | |
| GAACTGATTAGTGATTGTAA+GGG | + | chr1_1:78470346-78470365 | None:intergenic | 30.0% | |
| AGAACTGATTAGTGATTGTA+AGG | + | chr1_1:78470347-78470366 | None:intergenic | 30.0% | |
| TTACAATCACTAATCAGTTC+TGG | - | chr1_1:78470346-78470365 | Msa0046370:CDS | 30.0% | |
| GAAAAAGGACTAGAAGAAAA+AGG | + | chr1_1:78470397-78470416 | None:intergenic | 30.0% | |
| TGTTTAATCATTCCACAATC+AGG | - | chr1_1:78470707-78470726 | Msa0046370:intron | 30.0% | |
| TCATTATTAGTACCTGATTG+TGG | + | chr1_1:78470722-78470741 | None:intergenic | 30.0% | |
| TTTGTCAGTCATAAGAGAAT+TGG | - | chr1_1:78470822-78470841 | Msa0046370:intron | 30.0% | |
| TTGTCAGTCATAAGAGAATT+GGG | - | chr1_1:78470823-78470842 | Msa0046370:intron | 30.0% | |
| !! | AATGGATTGAAGAATGCATA+GGG | - | chr1_1:78470905-78470924 | Msa0046370:intron | 30.0% |
| ! | TTAAAATAAGTTGGAGGAGT+TGG | + | chr1_1:78470991-78471010 | None:intergenic | 30.0% |
| ! | TATATTGAAGAGCACAATCA+AGG | + | chr1_1:78471023-78471042 | None:intergenic | 30.0% |
| CAACTTGAAAATCAAATCCA+TGG | - | chr1_1:78471089-78471108 | Msa0046370:CDS | 30.0% | |
| GATAATTATTTCCCATGAGA+GGG | + | chr1_1:78471131-78471150 | None:intergenic | 30.0% | |
| AGATAATTATTTCCCATGAG+AGG | + | chr1_1:78471132-78471151 | None:intergenic | 30.0% | |
| !!! | CTTTTTTTAAAAACTGCTGC+AGG | - | chr1_1:78471310-78471329 | Msa0046370:intron | 30.0% |
| !!! | TTTTTTAAAAACTGCTGCAG+GGG | - | chr1_1:78471312-78471331 | Msa0046370:intron | 30.0% |
| GAAAATAAAACATTGGATGC+AGG | + | chr1_1:78471621-78471640 | None:intergenic | 30.0% | |
| ! | GGGATTGTTGTTGTTGATTA+GGG | + | chr1_1:78466706-78466725 | None:intergenic | 35.0% |
| ! | AGGGATTGTTGTTGTTGATT+AGG | + | chr1_1:78466707-78466726 | None:intergenic | 35.0% |
| AGAGGACGATATTGCAATTT+GGG | + | chr1_1:78466847-78466866 | None:intergenic | 35.0% | |
| AAGAGGACGATATTGCAATT+TGG | + | chr1_1:78466848-78466867 | None:intergenic | 35.0% | |
| TCTCTTCTCGATTTATCTTC+TGG | - | chr1_1:78466929-78466948 | Msa0046370:CDS | 35.0% | |
| !!! | TGATGGGTTTTTATTGTGTG+TGG | - | chr1_1:78467040-78467059 | Msa0046370:intron | 35.0% |
| CTTGTTCAGTTGTGTTCAAT+TGG | - | chr1_1:78467317-78467336 | Msa0046370:CDS | 35.0% | |
| TGGAATTTCGTTAGTTGCTT+AGG | - | chr1_1:78467337-78467356 | Msa0046370:CDS | 35.0% | |
| GGAATTTCGTTAGTTGCTTA+GGG | - | chr1_1:78467338-78467357 | Msa0046370:CDS | 35.0% | |
| ! | TGTTGTTTACAAGTTTGAGG+AGG | - | chr1_1:78467590-78467609 | Msa0046370:CDS | 35.0% |
| CTAAAGAACCAATGTTCTGT+AGG | + | chr1_1:78467741-78467760 | None:intergenic | 35.0% | |
| !! | CTACAGAACATTGGTTCTTT+AGG | - | chr1_1:78467739-78467758 | Msa0046370:intron | 35.0% |
| !! | CTTTAGGTTGTGATGATGAA+AGG | - | chr1_1:78467755-78467774 | Msa0046370:intron | 35.0% |
| ACTGAGACATCATGTTGTAA+TGG | - | chr1_1:78467829-78467848 | Msa0046370:CDS | 35.0% | |
| ! | CAAAACAAATTAGTCTCTCC+CGG | + | chr1_1:78467967-78467986 | None:intergenic | 35.0% |
| AGAAGATTGTTGGTGCAATT+TGG | + | chr1_1:78468052-78468071 | None:intergenic | 35.0% | |
| ATTGATCCTGAATCATCCTT+CGG | - | chr1_1:78468087-78468106 | Msa0046370:CDS | 35.0% | |
| AGCAAGAGTCTTTAATTCTG+AGG | - | chr1_1:78468191-78468210 | Msa0046370:CDS | 35.0% | |
| CTATCTGATGGAGAAAAAGA+AGG | - | chr1_1:78468273-78468292 | Msa0046370:CDS | 35.0% | |
| TTCGTTATCGGATGAAGAAA+AGG | - | chr1_1:78468641-78468660 | Msa0046370:CDS | 35.0% | |
| CATCACAAGGTTTGATATTG+AGG | + | chr1_1:78468698-78468717 | None:intergenic | 35.0% | |
| ATCAAACCTTGTGATGAAGA+AGG | - | chr1_1:78468702-78468721 | Msa0046370:CDS | 35.0% | |
| ! | GAATATGTGTTTTCGGATAC+AGG | + | chr1_1:78468789-78468808 | None:intergenic | 35.0% |
| !! | TGCTACTGTTGATTCGTTAT+CGG | - | chr1_1:78468869-78468888 | Msa0046370:CDS | 35.0% |
| TTCGTTATCGGATGAAGAAA+AGG | - | chr1_1:78468641-78468660 | Msa0046370:CDS | 35.0% | |
| ATTAAGTGACTCTGTCTGAA+AGG | + | chr1_1:78469006-78469025 | None:intergenic | 35.0% | |
| AACTAGTGAAGATGTGTTTC+CGG | + | chr1_1:78469036-78469055 | None:intergenic | 35.0% | |
| ATTAAGTGACTCTGTCTGAA+AGG | + | chr1_1:78469006-78469025 | None:intergenic | 35.0% | |
| AACTAGTGAAGATGTGTTTC+CGG | + | chr1_1:78469036-78469055 | None:intergenic | 35.0% | |
| ATTAAGTGACTCTGTCTGAA+AGG | + | chr1_1:78469006-78469025 | None:intergenic | 35.0% | |
| ATTCTTCTACACAGCTTTCA+TGG | + | chr1_1:78469610-78469629 | None:intergenic | 35.0% | |
| TGTGTAGAAGAATCAGTAGA+GGG | - | chr1_1:78469617-78469636 | Msa0046370:CDS | 35.0% | |
| TCGCAGTTTATGAGAAAGAA+AGG | - | chr1_1:78469884-78469903 | Msa0046370:CDS | 35.0% | |
| GTAAAAGTTCCAAGTCACAA+AGG | - | chr1_1:78469921-78469940 | Msa0046370:CDS | 35.0% | |
| ! | ACAAAGGGCACATAATTTGA+AGG | - | chr1_1:78469937-78469956 | Msa0046370:CDS | 35.0% |
| CTTTCAGCTGAATAGATGAT+GGG | + | chr1_1:78469974-78469993 | None:intergenic | 35.0% | |
| TCTTTCAGCTGAATAGATGA+TGG | + | chr1_1:78469975-78469994 | None:intergenic | 35.0% | |
| ! | ACAAAGGGCACATAATTTGA+AGG | - | chr1_1:78469937-78469956 | Msa0046370:CDS | 35.0% |
| CTTTCAGCTGAATAGATGAT+GGG | + | chr1_1:78469974-78469993 | None:intergenic | 35.0% | |
| TCTTTCAGCTGAATAGATGA+TGG | + | chr1_1:78469975-78469994 | None:intergenic | 35.0% | |
| CTTTCAGCTGAATAGATGAT+GGG | + | chr1_1:78469974-78469993 | None:intergenic | 35.0% | |
| TCTTTCAGCTGAATAGATGA+TGG | + | chr1_1:78469975-78469994 | None:intergenic | 35.0% | |
| ! | ATCCATTCTAGTGCTTCTTT+TGG | + | chr1_1:78470256-78470275 | None:intergenic | 35.0% |
| GGAATTAAGAAAGAAGAGAG+TGG | - | chr1_1:78470312-78470331 | Msa0046370:CDS | 35.0% | |
| TAAGAAAGAAGAGAGTGGAA+CGG | - | chr1_1:78470317-78470336 | Msa0046370:CDS | 35.0% | |
| ! | ATGGATTTTGCAGCTGAAAA+AGG | + | chr1_1:78470412-78470431 | None:intergenic | 35.0% |
| TGAAATATGTCCACAATTGC+TGG | + | chr1_1:78470455-78470474 | None:intergenic | 35.0% | |
| CACTTCTTCTCTTCTGAATA+AGG | - | chr1_1:78470640-78470659 | Msa0046370:intron | 35.0% | |
| TCTGAATAAGGAGTCAAGAA+AGG | - | chr1_1:78470652-78470671 | Msa0046370:intron | 35.0% | |
| !! | GAATGGATTGAAGAATGCAT+AGG | - | chr1_1:78470904-78470923 | Msa0046370:intron | 35.0% |
| GATTCATATCCAAAGCTCAA+TGG | - | chr1_1:78470942-78470961 | Msa0046370:intron | 35.0% | |
| AGTTGACATCATCACTAAGA+AGG | + | chr1_1:78471074-78471093 | None:intergenic | 35.0% | |
| GTATTTCATTACCCTCTCAT+GGG | - | chr1_1:78471117-78471136 | Msa0046370:CDS | 35.0% | |
| CGGTCAAAATTAAATGCAGT+CGG | - | chr1_1:78471198-78471217 | Msa0046370:CDS | 35.0% | |
| ACATAAACCTCTCAGAGAAA+GGG | + | chr1_1:78471382-78471401 | None:intergenic | 35.0% | |
| ! | TTTCTCTGAGAGGTTTATGT+GGG | - | chr1_1:78471382-78471401 | Msa0046370:CDS | 35.0% |
| CAGGGATGTTAAAACTTGAA+AGG | + | chr1_1:78471602-78471621 | None:intergenic | 35.0% | |
| TCTTCAGCTTCTTCTTCCAA+TGG | - | chr1_1:78466655-78466674 | Msa0046370:three_prime_UTR | 40.0% | |
| GAAACGACAATTGAAGCCAT+TGG | + | chr1_1:78466674-78466693 | None:intergenic | 40.0% | |
| ! | TGAGGATGATGATGTTCTTG+AGG | + | chr1_1:78466766-78466785 | None:intergenic | 40.0% |
| AGAGAAACAGAGCAAGAAGA+AGG | + | chr1_1:78466914-78466933 | None:intergenic | 40.0% | |
| !! | TGAGCGTTGATTTGAAGGAA+GGG | - | chr1_1:78467110-78467129 | Msa0046370:intron | 40.0% |
| ! | TGCATCGACATCATCGAATT+GGG | + | chr1_1:78467188-78467207 | None:intergenic | 40.0% |
| ! | ATGCATCGACATCATCGAAT+TGG | + | chr1_1:78467189-78467208 | None:intergenic | 40.0% |
| CGATGATGTCGATGCATTAA+AGG | - | chr1_1:78467192-78467211 | Msa0046370:CDS | 40.0% | |
| TACAAGTTTGAGGAGGAAAG+TGG | - | chr1_1:78467597-78467616 | Msa0046370:CDS | 40.0% | |
| ! | AGGTTGTGATGATGAAAGGA+AGG | - | chr1_1:78467759-78467778 | Msa0046370:intron | 40.0% |
| TCATCAACTGATTGCGTGTA+AGG | + | chr1_1:78467898-78467917 | None:intergenic | 40.0% | |
| TGAAGCTGATAACATGCAGA+TGG | - | chr1_1:78467915-78467934 | Msa0046370:CDS | 40.0% | |
| GAAGCTGATAACATGCAGAT+GGG | - | chr1_1:78467916-78467935 | Msa0046370:CDS | 40.0% | |
| ATTGCACCAACAATCTTCTG+CGG | - | chr1_1:78468053-78468072 | Msa0046370:CDS | 40.0% | |
| TTGATCCTGAATCATCCTTC+GGG | - | chr1_1:78468088-78468107 | Msa0046370:CDS | 40.0% | |
| TCATCAAACCAATACTGACG+AGG | - | chr1_1:78468233-78468252 | Msa0046370:CDS | 40.0% | |
| AGAAACTTCCTCGTCAGTAT+TGG | + | chr1_1:78468244-78468263 | None:intergenic | 40.0% | |
| TCTGTGGATTCACTATCTGA+TGG | - | chr1_1:78468261-78468280 | Msa0046370:CDS | 40.0% | |
| GGAGAAAAAGAAGGTAGTTG+CGG | - | chr1_1:78468282-78468301 | Msa0046370:CDS | 40.0% | |
| TCACAAGCAACAGTATTCAC+TGG | - | chr1_1:78468350-78468369 | Msa0046370:CDS | 40.0% | |
| ! | CCATTTTCTTCAGAAGATGC+AGG | + | chr1_1:78468423-78468442 | None:intergenic | 40.0% |
| ! | CCTGCATCTTCTGAAGAAAA+TGG | - | chr1_1:78468420-78468439 | Msa0046370:CDS | 40.0% |
| TAAATGTGACGTGGAGTTCA+AGG | - | chr1_1:78468668-78468687 | Msa0046370:CDS | 40.0% | |
| GAGTTACCTTCTTCATCACA+AGG | + | chr1_1:78468711-78468730 | None:intergenic | 40.0% | |
| TGATGAAGAAGGTAACTCAC+TGG | - | chr1_1:78468713-78468732 | Msa0046370:CDS | 40.0% | |
| TGAATGTGATGAGGAGTTCA+AGG | - | chr1_1:78468908-78468927 | Msa0046370:CDS | 40.0% | |
| CATCACAAGGTTTGACATAG+AGG | + | chr1_1:78468938-78468957 | None:intergenic | 40.0% | |
| GTCAAACCTTGTGATGAAGA+AGG | - | chr1_1:78468942-78468961 | Msa0046370:CDS | 40.0% | |
| GAGTCACTTAATCCTTCATC+CGG | - | chr1_1:78469014-78469033 | Msa0046370:CDS | 40.0% | |
| TGAATGTGATGAGGAGTTCA+AGG | - | chr1_1:78468908-78468927 | Msa0046370:CDS | 40.0% | |
| CATCACAAGGTTTGACATAG+AGG | + | chr1_1:78468938-78468957 | None:intergenic | 40.0% | |
| GTCAAACCTTGTGATGAAGA+AGG | - | chr1_1:78468942-78468961 | Msa0046370:CDS | 40.0% | |
| GAGTCACTTAATCCTTCATC+CGG | - | chr1_1:78469014-78469033 | Msa0046370:CDS | 40.0% | |
| TGAATGTGATGAGGAGTTCA+AGG | - | chr1_1:78468908-78468927 | Msa0046370:CDS | 40.0% | |
| CATCACAAGGTTTGACATAG+AGG | + | chr1_1:78468938-78468957 | None:intergenic | 40.0% | |
| GTCAAACCTTGTGATGAAGA+AGG | - | chr1_1:78468942-78468961 | Msa0046370:CDS | 40.0% | |
| GAGTTACCTTCTTCATCACA+AGG | + | chr1_1:78468711-78468730 | None:intergenic | 40.0% | |
| ACTTAATCCTTCAGTGACTC+AGG | - | chr1_1:78469499-78469518 | Msa0046370:CDS | 40.0% | |
| AGTGACTCAGGAAACTGATA+TGG | - | chr1_1:78469511-78469530 | Msa0046370:CDS | 40.0% | |
| CTGTGTAGAAGAATCAGTAG+AGG | - | chr1_1:78469616-78469635 | Msa0046370:CDS | 40.0% | |
| ! | GGGCTTGAGTTTTCCTTATT+TGG | + | chr1_1:78469848-78469867 | None:intergenic | 40.0% |
| TCTCATAAACTGCGAGTGAA+AGG | + | chr1_1:78469879-78469898 | None:intergenic | 40.0% | |
| ATTATGTGCCCTTTGTGACT+TGG | + | chr1_1:78469933-78469952 | None:intergenic | 40.0% | |
| TTATGTGCCCTTTGTGACTT+CGG | + | chr1_1:78469932-78469951 | None:intergenic | 40.0% | |
| TTCCATTCATGTGCTTCTCT+TGG | + | chr1_1:78470136-78470155 | None:intergenic | 40.0% | |
| !! | CTCCAAAAGAAGCACTAGAA+TGG | - | chr1_1:78470251-78470270 | Msa0046370:CDS | 40.0% |
| ATAGTATTGCGACACTCAAG+AGG | + | chr1_1:78470292-78470311 | None:intergenic | 40.0% | |
| ! | TCTTGAGTGTCGCAATACTA+TGG | - | chr1_1:78470291-78470310 | Msa0046370:CDS | 40.0% |
| ! | CAATCACTAATCAGTTCTGG+AGG | - | chr1_1:78470349-78470368 | Msa0046370:CDS | 40.0% |
| TCAGCTGCAAAATCCATTCT+TGG | - | chr1_1:78470415-78470434 | Msa0046370:CDS | 40.0% | |
| GTGATATCTTACAGATGGCT+GGG | + | chr1_1:78470488-78470507 | None:intergenic | 40.0% | |
| TGTGATATCTTACAGATGGC+TGG | + | chr1_1:78470489-78470508 | None:intergenic | 40.0% | |
| GTATTAGTGCAGAACGAAAG+AGG | - | chr1_1:78470597-78470616 | Msa0046370:intron | 40.0% | |
| ! | GGAAGCATGAAGCAACAAAT+TGG | - | chr1_1:78470844-78470863 | Msa0046370:intron | 40.0% |
| GCATTCTTCAATCCATTCCA+AGG | + | chr1_1:78470902-78470921 | None:intergenic | 40.0% | |
| AATGCATAGGGAAGACAAAG+TGG | - | chr1_1:78470917-78470936 | Msa0046370:intron | 40.0% | |
| TCATATCCAAAGCTCAATGG+AGG | - | chr1_1:78470945-78470964 | Msa0046370:intron | 40.0% | |
| ATTCATCCTCCATTGAGCTT+TGG | + | chr1_1:78470954-78470973 | None:intergenic | 40.0% | |
| TCTCAATCCATAGCAAACCT+CGG | - | chr1_1:78471158-78471177 | Msa0046370:CDS | 40.0% | |
| TGGCTGTTGGATTAATCTAG+CGG | + | chr1_1:78471224-78471243 | None:intergenic | 40.0% | |
| ATTAATCCAACAGCCAAAGC+TGG | - | chr1_1:78471228-78471247 | Msa0046370:intron | 40.0% | |
| TTAATCCAACAGCCAAAGCT+GGG | - | chr1_1:78471229-78471248 | Msa0046370:intron | 40.0% | |
| GGGTTGCAAAGAATCAAAGT+TGG | - | chr1_1:78471254-78471273 | Msa0046370:intron | 40.0% | |
| CACATAAACCTCTCAGAGAA+AGG | + | chr1_1:78471383-78471402 | None:intergenic | 40.0% | |
| ! | CTTTCTCTGAGAGGTTTATG+TGG | - | chr1_1:78471381-78471400 | Msa0046370:CDS | 40.0% |
| CCCTTAAAACCACATCATCT+CGG | + | chr1_1:78471442-78471461 | None:intergenic | 40.0% | |
| !!! | CCGAGATGATGTGGTTTTAA+GGG | - | chr1_1:78471439-78471458 | Msa0046370:CDS | 40.0% |
| !! | ATATTGCTGTTTGCCATCCA+AGG | - | chr1_1:78471466-78471485 | Msa0046370:CDS | 40.0% |
| GATGATCAAATCCTCCTCGT+TGG | - | chr1_1:78466815-78466834 | Msa0046370:CDS | 45.0% | |
| ATTGTGTGTGGTACAGTGCA+TGG | - | chr1_1:78467052-78467071 | Msa0046370:intron | 45.0% | |
| !! | GTGAGCGTTGATTTGAAGGA+AGG | - | chr1_1:78467109-78467128 | Msa0046370:intron | 45.0% |
| !! | GAGCGTTGATTTGAAGGAAG+GGG | - | chr1_1:78467111-78467130 | Msa0046370:intron | 45.0% |
| AAGGGGATAGCTTTCAGCTT+GGG | - | chr1_1:78467128-78467147 | Msa0046370:intron | 45.0% | |
| TTCAGCTTGGGAGTTCAAGT+AGG | - | chr1_1:78467140-78467159 | Msa0046370:intron | 45.0% | |
| TCAGCTTGGGAGTTCAAGTA+GGG | - | chr1_1:78467141-78467160 | Msa0046370:intron | 45.0% | |
| GTTTGAGGAGGAAAGTGGTT+TGG | - | chr1_1:78467602-78467621 | Msa0046370:CDS | 45.0% | |
| TCAACTGATTGCGTGTAAGG+TGG | + | chr1_1:78467895-78467914 | None:intergenic | 45.0% | |
| ! | GCTTTTCCGCAGAAGATTGT+TGG | + | chr1_1:78468062-78468081 | None:intergenic | 45.0% |
| TGATCCTGAATCATCCTTCG+GGG | - | chr1_1:78468089-78468108 | Msa0046370:CDS | 45.0% | |
| ! | TTTTCCCCGAAGGATGATTC+AGG | + | chr1_1:78468096-78468115 | None:intergenic | 45.0% |
| GAATCATCCTTCGGGGAAAA+AGG | - | chr1_1:78468096-78468115 | Msa0046370:CDS | 45.0% | |
| TACTGACGAGGAAGTTTCTG+TGG | - | chr1_1:78468245-78468264 | Msa0046370:CDS | 45.0% | |
| !! | TGCTGCTGCTGATTCGTTAT+CGG | - | chr1_1:78468629-78468648 | Msa0046370:CDS | 45.0% |
| GAAGATGTGTTTCCGGATGA+AGG | + | chr1_1:78469029-78469048 | None:intergenic | 45.0% | |
| GAAGATGTGTTTCCGGATGA+AGG | + | chr1_1:78469029-78469048 | None:intergenic | 45.0% | |
| TCAGTTTCCTGAGTCACTGA+AGG | + | chr1_1:78469509-78469528 | None:intergenic | 45.0% | |
| CACAGCAACAAGAGATTGCA+GGG | + | chr1_1:78469564-78469583 | None:intergenic | 45.0% | |
| !! | TGCGAGTGAAAGGTGTTTGT+GGG | + | chr1_1:78469869-78469888 | None:intergenic | 45.0% |
| ! | CTCCAAGAGAAGCACATGAA+TGG | - | chr1_1:78470131-78470150 | Msa0046370:CDS | 45.0% |
| !!! | CTAGTGCTTCTTTTGGAGTC+AGG | + | chr1_1:78470249-78470268 | None:intergenic | 45.0% |
| ! | GAAGCACTAGAATGGATGTC+AGG | - | chr1_1:78470259-78470278 | Msa0046370:CDS | 45.0% |
| TCTGACAGTGACACCAAGAA+TGG | + | chr1_1:78470431-78470450 | None:intergenic | 45.0% | |
| ACTGTCAGATCCAGCAATTG+TGG | - | chr1_1:78470442-78470461 | Msa0046370:CDS | 45.0% | |
| AAGGCTTTGCAGCTTCTACA+AGG | - | chr1_1:78470671-78470690 | Msa0046370:intron | 45.0% | |
| AGCTTCTACAAGGTCTCAAG+AGG | - | chr1_1:78470681-78470700 | Msa0046370:intron | 45.0% | |
| AAGGATTTCAGAGGCTGCTT+TGG | - | chr1_1:78470876-78470895 | Msa0046370:intron | 45.0% | |
| GCTCAATGGAGGATGAATTC+AGG | - | chr1_1:78470956-78470975 | Msa0046370:intron | 45.0% | |
| !! | GAGGTTTGCTATGGATTGAG+AGG | + | chr1_1:78471159-78471178 | None:intergenic | 45.0% |
| CTAGATTAATCCAAACGCCG+AGG | + | chr1_1:78471178-78471197 | None:intergenic | 45.0% | |
| CGGCGTTTGGATTAATCTAG+CGG | - | chr1_1:78471178-78471197 | Msa0046370:CDS | 45.0% | |
| TAGTGAACCCTTTCTCTGAG+AGG | - | chr1_1:78471372-78471391 | Msa0046370:CDS | 45.0% | |
| !! | GCCGAGATGATGTGGTTTTA+AGG | - | chr1_1:78471438-78471457 | Msa0046370:CDS | 45.0% |
| !!! | ATATAAATTTGAAATAAAAA+TGG | + | chr1_1:78467220-78467239 | None:intergenic | 5.0% |
| !! | AATTTGGGTGTCGACCAACG+AGG | + | chr1_1:78466832-78466851 | None:intergenic | 50.0% |
| GATGGAAACGGCTGATGCTA+GGG | + | chr1_1:78466874-78466893 | None:intergenic | 50.0% | |
| AGATGGAAACGGCTGATGCT+AGG | + | chr1_1:78466875-78466894 | None:intergenic | 50.0% | |
| TGGTACAGTGCATGGAACGT+GGG | - | chr1_1:78467060-78467079 | Msa0046370:intron | 50.0% | |
| TGCGGTAGAAAGCTTGAGCA+CGG | - | chr1_1:78467085-78467104 | Msa0046370:intron | 50.0% | |
| !! | CGGTGTGAGCGTTGATTTGA+AGG | - | chr1_1:78467105-78467124 | Msa0046370:intron | 50.0% |
| GAAGGGGATAGCTTTCAGCT+TGG | - | chr1_1:78467127-78467146 | Msa0046370:intron | 50.0% | |
| ! | GGCTTTGGCCTACAGAACAT+TGG | - | chr1_1:78467730-78467749 | Msa0046370:intron | 50.0% |
| ! | GTTGGTGCAATTTGGAGCCT+TGG | + | chr1_1:78468044-78468063 | None:intergenic | 50.0% |
| GAGCTGCCTTCTTCATCACA+AGG | + | chr1_1:78468951-78468970 | None:intergenic | 50.0% | |
| TGATGAAGAAGGCAGCTCAC+TGG | - | chr1_1:78468953-78468972 | Msa0046370:CDS | 50.0% | |
| GAGCTGCCTTCTTCATCACA+AGG | + | chr1_1:78468951-78468970 | None:intergenic | 50.0% | |
| TGATGAAGAAGGCAGCTCAC+TGG | - | chr1_1:78468953-78468972 | Msa0046370:CDS | 50.0% | |
| CCACAGCAACAAGAGATTGC+AGG | + | chr1_1:78469565-78469584 | None:intergenic | 50.0% | |
| CCTGCAATCTCTTGTTGCTG+TGG | - | chr1_1:78469562-78469581 | Msa0046370:CDS | 50.0% | |
| CAATCTCTTGTTGCTGTGGC+TGG | - | chr1_1:78469566-78469585 | Msa0046370:CDS | 50.0% | |
| GTAGAGGGAAGCTTAACCCT+TGG | - | chr1_1:78469632-78469651 | Msa0046370:CDS | 50.0% | |
| CTCTTCCAAGTTCGATCCTG+AGG | + | chr1_1:78469698-78469717 | None:intergenic | 50.0% | |
| !! | GCGAGTGAAAGGTGTTTGTG+GGG | + | chr1_1:78469868-78469887 | None:intergenic | 50.0% |
| !! | CTGCGAGTGAAAGGTGTTTG+TGG | + | chr1_1:78469870-78469889 | None:intergenic | 50.0% |
| ACCAGACTCCGAAGTCACAA+AGG | - | chr1_1:78470023-78470042 | Msa0046370:CDS | 50.0% | |
| CCAGACTCCGAAGTCACAAA+GGG | - | chr1_1:78470024-78470043 | Msa0046370:CDS | 50.0% | |
| CATGTGCTTCTCTTGGAGTC+AGG | + | chr1_1:78470129-78470148 | None:intergenic | 50.0% | |
| TGCAGAACGAAAGAGGAGCT+GGG | - | chr1_1:78470604-78470623 | Msa0046370:intron | 50.0% | |
| GCATAGGGAAGACAAAGTGG+TGG | - | chr1_1:78470920-78470939 | Msa0046370:intron | 50.0% | |
| !! | TTGGTCTTGCCGAGATGATG+TGG | - | chr1_1:78471430-78471449 | Msa0046370:CDS | 50.0% |
| !! | TTGCTGTTTGCCATCCAAGG+CGG | - | chr1_1:78471469-78471488 | Msa0046370:CDS | 50.0% |
| GGCTGATGCTAGGGTGAAAG+AGG | + | chr1_1:78466865-78466884 | None:intergenic | 55.0% | |
| GTGGTACAGTGCATGGAACG+TGG | - | chr1_1:78467059-78467078 | Msa0046370:intron | 55.0% | |
| TTGTCCCGAAGTGGAGATGC+CGG | - | chr1_1:78467945-78467964 | Msa0046370:CDS | 55.0% | |
| TCCTTCGGGGAAAAAGGCGA+CGG | - | chr1_1:78468102-78468121 | Msa0046370:CDS | 55.0% | |
| GTGCACCTCAGGATCGAACT+TGG | - | chr1_1:78469690-78469709 | Msa0046370:CDS | 55.0% | |
| CCCTTTGTGACTTCGGAGTC+TGG | + | chr1_1:78470027-78470046 | None:intergenic | 55.0% | |
| GTGCAGAACGAAAGAGGAGC+TGG | - | chr1_1:78470603-78470622 | Msa0046370:intron | 55.0% | |
| ACGAAAGAGGAGCTGGGACT+TGG | - | chr1_1:78470610-78470629 | Msa0046370:intron | 55.0% | |
| ! | TTCAGAGGCTGCTTTGGCCT+TGG | - | chr1_1:78470882-78470901 | Msa0046370:intron | 55.0% |
| !! | AGGCTGCTTTGGCCTTGGAA+TGG | - | chr1_1:78470887-78470906 | Msa0046370:intron | 55.0% |
| !! | CCAAACGCCGAGGTTTGCTA+TGG | + | chr1_1:78471168-78471187 | None:intergenic | 55.0% |
| CCATAGCAAACCTCGGCGTT+TGG | - | chr1_1:78471165-78471184 | Msa0046370:CDS | 55.0% | |
| ATCCAACAGCCAAAGCTGGG+AGG | - | chr1_1:78471232-78471251 | Msa0046370:intron | 55.0% | |
| TCCAACAGCCAAAGCTGGGA+GGG | - | chr1_1:78471233-78471252 | Msa0046370:intron | 55.0% | |
| TTTGCAACCCCTCCCAGCTT+TGG | + | chr1_1:78471244-78471263 | None:intergenic | 55.0% | |
| CAAGACCAAGTCAGTCCTCG+AGG | + | chr1_1:78471419-78471438 | None:intergenic | 55.0% | |
| ! | TGCTGTTTGCCATCCAAGGC+GGG | - | chr1_1:78471470-78471489 | Msa0046370:CDS | 55.0% |
| AGCTTCAAACCCGCCTTGGA+TGG | + | chr1_1:78471482-78471501 | None:intergenic | 55.0% | |
| AAGCAGCTTCAAACCCGCCT+TGG | + | chr1_1:78471486-78471505 | None:intergenic | 55.0% | |
| !! | TTGGGTGTCGACCAACGAGG+AGG | + | chr1_1:78466829-78466848 | None:intergenic | 60.0% |
| GTGCATGGAACGTGGGTGTG+CGG | - | chr1_1:78467067-78467086 | Msa0046370:intron | 60.0% | |
| GGGTGAAGCTTGTCCCGAAG+TGG | - | chr1_1:78467936-78467955 | Msa0046370:CDS | 60.0% | |
| TGTCCCGAAGTGGAGATGCC+GGG | - | chr1_1:78467946-78467965 | Msa0046370:CDS | 60.0% | |
| TCTCCCGGCATCTCCACTTC+GGG | + | chr1_1:78467952-78467971 | None:intergenic | 60.0% | |
| CTCTCCCGGCATCTCCACTT+CGG | + | chr1_1:78467953-78467972 | None:intergenic | 60.0% | |
| CCTTGGACTGCTTCCGCAAC+TGG | + | chr1_1:78468027-78468046 | None:intergenic | 60.0% | |
| CCAGTTGCGGAAGCAGTCCA+AGG | - | chr1_1:78468024-78468043 | Msa0046370:CDS | 60.0% | |
| ! | ACCGTCGCCTTTTTCCCCGA+AGG | + | chr1_1:78468106-78468125 | None:intergenic | 60.0% |
| ! | GGAAAAAGGCGACGGTGCTG+TGG | - | chr1_1:78468110-78468129 | Msa0046370:CDS | 60.0% |
| TAAGGCTGCGAGTGCACCTC+AGG | - | chr1_1:78469679-78469698 | Msa0046370:CDS | 60.0% | |
| CCAACAGCCAAAGCTGGGAG+GGG | - | chr1_1:78471234-78471253 | Msa0046370:intron | 60.0% | |
| TGGGCTAACAGCTCTCCTCG+AGG | - | chr1_1:78471401-78471420 | Msa0046370:CDS | 60.0% | |
| GCTCTCCTCGAGGACTGACT+TGG | - | chr1_1:78471411-78471430 | Msa0046370:CDS | 60.0% | |
| !! | AGGCGACGGTGCTGTGGATG+AGG | - | chr1_1:78468116-78468135 | Msa0046370:CDS | 65.0% |
| ! | CCCCTCCCAGCTTTGGCTGT+TGG | + | chr1_1:78471237-78471256 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 78466617 | 78471685 | 78466617 | ID=Msa0046370;Name=Msa0046370 |
| chr1_1 | mRNA | 78466617 | 78471685 | 78466617 | ID=Msa0046370-mRNA-1;Parent=Msa0046370;Name=Msa0046370-mRNA-1;_AED=0.02;_eAED=0.02;_QI=57|1|1|1|1|1|6|171|1258 |
| chr1_1 | exon | 78466617 | 78466970 | 78466617 | ID=Msa0046370-mRNA-1:exon:27021;Parent=Msa0046370-mRNA-1 |
| chr1_1 | exon | 78467186 | 78467472 | 78467186 | ID=Msa0046370-mRNA-1:exon:27020;Parent=Msa0046370-mRNA-1 |
| chr1_1 | exon | 78467574 | 78467706 | 78467574 | ID=Msa0046370-mRNA-1:exon:27019;Parent=Msa0046370-mRNA-1 |
| chr1_1 | exon | 78467807 | 78470557 | 78467807 | ID=Msa0046370-mRNA-1:exon:27018;Parent=Msa0046370-mRNA-1 |
| chr1_1 | exon | 78471089 | 78471234 | 78471089 | ID=Msa0046370-mRNA-1:exon:27017;Parent=Msa0046370-mRNA-1 |
| chr1_1 | exon | 78471352 | 78471685 | 78471352 | ID=Msa0046370-mRNA-1:exon:27016;Parent=Msa0046370-mRNA-1 |
| chr1_1 | five_prime_UTR | 78471629 | 78471685 | 78471629 | ID=Msa0046370-mRNA-1:five_prime_utr;Parent=Msa0046370-mRNA-1 |
| chr1_1 | CDS | 78471352 | 78471628 | 78471352 | ID=Msa0046370-mRNA-1:cds;Parent=Msa0046370-mRNA-1 |
| chr1_1 | CDS | 78471089 | 78471234 | 78471089 | ID=Msa0046370-mRNA-1:cds;Parent=Msa0046370-mRNA-1 |
| chr1_1 | CDS | 78467807 | 78470557 | 78467807 | ID=Msa0046370-mRNA-1:cds;Parent=Msa0046370-mRNA-1 |
| chr1_1 | CDS | 78467574 | 78467706 | 78467574 | ID=Msa0046370-mRNA-1:cds;Parent=Msa0046370-mRNA-1 |
| chr1_1 | CDS | 78467186 | 78467472 | 78467186 | ID=Msa0046370-mRNA-1:cds;Parent=Msa0046370-mRNA-1 |
| chr1_1 | CDS | 78466788 | 78466970 | 78466788 | ID=Msa0046370-mRNA-1:cds;Parent=Msa0046370-mRNA-1 |
| chr1_1 | three_prime_UTR | 78466617 | 78466787 | 78466617 | ID=Msa0046370-mRNA-1:three_prime_utr;Parent=Msa0046370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
