AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1372560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1372560 MtrunA17_Chr8g0392621 98.622 871 12 0 1 871 22 892 0.0 1769
Msa1372560 MtrunA17_Chr6g0483131 65.760 882 266 16 5 870 8 869 0.0 1069
Msa1372560 MtrunA17_Chr4g0070741 27.178 482 212 19 518 867 593 1067 2.04e-28 123
Msa1372560 MtrunA17_Chr4g0070741 25.800 469 291 16 109 538 57 507 1.33e-22 104
Msa1372560 MtrunA17_Chr2g0300211 34.000 200 124 4 99 293 70 266 2.61e-27 119
Msa1372560 MtrunA17_Chr2g0300211 24.893 466 216 15 519 855 704 1164 3.12e-26 116
Msa1372560 MtrunA17_Chr1g0150791 36.207 174 105 3 105 275 76 246 3.88e-27 119
Msa1372560 MtrunA17_Chr1g0150791 24.681 470 260 14 471 871 621 1065 4.35e-26 115
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1372560 AT1G42550.1 54.762 882 327 27 9 869 12 842 0.0 813
Msa1372560 AT5G20610.1 30.383 339 209 11 87 413 38 361 2.87e-27 120
Msa1372560 AT5G20610.1 33.005 203 127 4 514 709 701 901 1.12e-21 102
Msa1372560 AT5G26160.3 31.925 213 126 6 65 272 32 230 7.64e-25 112
Msa1372560 AT5G26160.3 25.341 367 228 12 517 851 590 942 1.47e-19 94.7
Msa1372560 AT5G26160.2 31.925 213 126 6 65 272 32 230 8.42e-25 111
Msa1372560 AT5G26160.2 25.341 367 228 12 517 851 590 942 1.31e-19 95.1
Msa1372560 AT5G26160.1 31.925 213 126 6 65 272 32 230 8.42e-25 111
Msa1372560 AT5G26160.1 25.341 367 228 12 517 851 590 942 1.31e-19 95.1

Find 230 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACACATCAACAACTAATT+TGG 0.112687 tig0019280:+56976 Msa1372560:CDS
TCGTTTCTGCTTGTCATTCT+AGG 0.136217 tig0019280:-57637 None:intergenic
CTATGTGGTCATCAACTTTC+TGG 0.179146 tig0019280:-57765 None:intergenic
AGTTGTAAAGGTGGAATTTC+AGG 0.189977 tig0019280:-58150 None:intergenic
AATATCAGCGTGACTCTTTC+AGG 0.228861 tig0019280:-58909 None:intergenic
ACATCTGCATTGCTAGCTTT+GGG 0.242611 tig0019280:-58326 None:intergenic
CTGAGCATTGGGATTGTTCT+TGG 0.248888 tig0019280:-56693 None:intergenic
TGCAACCGGTTTCTCTTCTA+TGG 0.251241 tig0019280:-57887 None:intergenic
GAGGAATCATGAACTGGATT+TGG 0.266943 tig0019280:-57733 None:intergenic
GACATCTGCATTGCTAGCTT+TGG 0.273912 tig0019280:-58327 None:intergenic
GTTTGACTTGTTTCAGAAAT+TGG 0.274326 tig0019280:+58389 Msa1372560:CDS
CACCTCTTTGGTTTCTGTCT+TGG 0.280369 tig0019280:-56948 None:intergenic
GCCTTACTCGTGCACCTTGT+TGG 0.294284 tig0019280:-57399 None:intergenic
GATGCTCAAGAGCTGGATTT+TGG 0.294691 tig0019280:+57325 Msa1372560:CDS
CTTATTCATGCAACACGTTC+TGG 0.320960 tig0019280:+58993 Msa1372560:CDS
GGAAAGTGGGAAAGATCTTT+TGG 0.322823 tig0019280:+58800 Msa1372560:CDS
CTTGGCTTCCATGAATCCTT+TGG 0.326206 tig0019280:+58278 Msa1372560:CDS
ATGCGTGCACTTTCACATAT+TGG 0.332421 tig0019280:+57037 Msa1372560:CDS
TGTGTTAACCACCACCTCTT+TGG 0.342541 tig0019280:-56960 None:intergenic
GTCCCATGCATTCTTATTTG+TGG 0.349501 tig0019280:-59093 None:intergenic
CTTCTTCTCATGATTGTTGT+TGG 0.355425 tig0019280:-57263 None:intergenic
TCGGATTCTCCTCCATCTTC+CGG 0.357183 tig0019280:-58192 None:intergenic
AACACATCAACAACTAATTT+GGG 0.359751 tig0019280:+56977 Msa1372560:CDS
AGAAGCTTCTCTGAAGTAAC+TGG 0.362673 tig0019280:-58663 None:intergenic
AGGCACACTGAAGGATGATT+TGG 0.363853 tig0019280:-57611 None:intergenic
CTGCTTGTCATTCTAGGACT+AGG 0.364675 tig0019280:-57631 None:intergenic
AGAATGAGAAGAAAGGGATT+TGG 0.370371 tig0019280:+57002 Msa1372560:CDS
ATGTGGGTGGTTTCAAAGTT+AGG 0.372982 tig0019280:+59066 Msa1372560:CDS
TTCTGACCTCGGTAAAGGCT+TGG 0.373813 tig0019280:+58224 Msa1372560:CDS
TGAAAGAGTCACGCTGATAT+TGG 0.381885 tig0019280:+58911 Msa1372560:CDS
GAAATTCCATCCTCAAGCTT+TGG 0.383944 tig0019280:-56926 None:intergenic
TGACAAACTACTCAACTTGC+TGG 0.387407 tig0019280:-57566 None:intergenic
GATACGAGCTTCAAGTTATC+TGG 0.390732 tig0019280:+57427 Msa1372560:CDS
CTGCTATTCCACTTGAGGAT+TGG 0.394911 tig0019280:+58826 Msa1372560:CDS
CTGGACTTTGAATTCTGCAT+TGG 0.395970 tig0019280:-57547 None:intergenic
AGGAATCATGAACTGGATTT+GGG 0.397713 tig0019280:-57732 None:intergenic
TTTCAGAAATTGGCTGGCAT+TGG 0.398106 tig0019280:+58399 Msa1372560:CDS
TCTGACCTCGGTAAAGGCTT+GGG 0.399031 tig0019280:+58225 Msa1372560:CDS
CAAATCGTCCATTCCTTGAA+TGG 0.403133 tig0019280:-57698 None:intergenic
TTCACAACCTCATCTGCAAC+CGG 0.404254 tig0019280:-57901 None:intergenic
ACTTCTTCATATCGTCTCAT+TGG 0.404417 tig0019280:-58951 None:intergenic
AACAAGAGATGGCGGATACT+TGG 0.406870 tig0019280:+58260 Msa1372560:CDS
TCTTCAAGAATCTGAGCATT+GGG 0.406979 tig0019280:-56704 None:intergenic
TGCTGTTGATGCTCAAGAGC+TGG 0.408444 tig0019280:+57318 Msa1372560:CDS
ATGCAATGGTTAGTTGCATA+TGG 0.412127 tig0019280:+59140 Msa1372560:CDS
AACAACATCCAAAGGATTCA+TGG 0.412903 tig0019280:-58286 None:intergenic
AGAGGAAGAGACGGAATCAT+TGG 0.413020 tig0019280:+58044 Msa1372560:CDS
TGGGAGAGAATGAGAAGAAA+GGG 0.417323 tig0019280:+56996 Msa1372560:CDS
GGCTAGTCTTAGTCCGTTCA+TGG 0.419473 tig0019280:-57122 None:intergenic
CACTTTACAAGCTTGACATC+GGG 0.426837 tig0019280:-59275 None:intergenic
CTTTGTTGTAGCTTAAGCTT+TGG 0.427831 tig0019280:-58857 None:intergenic
ATCGAATGGAGCTTCTTCTT+CGG 0.429366 tig0019280:-58751 None:intergenic
GCAACACGTTCTGGCACAAA+GGG 0.435630 tig0019280:+59002 Msa1372560:CDS
TCAAAAGCAATCTGCTCTGC+AGG 0.437855 tig0019280:-58486 None:intergenic
ACTGCAACTGCAAGTTCTAA+TGG 0.438234 tig0019280:+58882 Msa1372560:CDS
TCCTCCATCTTCCGGAGAAT+CGG 0.440582 tig0019280:-58184 None:intergenic
GCCAACAAGGTGCACGAGTA+AGG 0.442623 tig0019280:+57398 Msa1372560:CDS
ATTGTCATTGTGATCTTCAA+TGG 0.443126 tig0019280:-56825 None:intergenic
TGGGAAAAGCAGGGAAGAAA+GGG 0.443601 tig0019280:+59165 Msa1372560:CDS
TTGGGAAAAGCAGGGAAGAA+AGG 0.444809 tig0019280:+59164 Msa1372560:CDS
GGAGAACTTGTTGTGAAACT+TGG 0.445170 tig0019280:+57463 Msa1372560:CDS
TGGTTAGTTGCATATGGGTT+GGG 0.448026 tig0019280:+59146 Msa1372560:CDS
TAAGACTAGCCGTTTGCGTT+AGG 0.448434 tig0019280:+57134 Msa1372560:CDS
ATGTCAAACATTATCAGTTC+AGG 0.453173 tig0019280:+58594 Msa1372560:CDS
AAAAGCTCTTGAGTCTATGA+TGG 0.453235 tig0019280:+57990 Msa1372560:CDS
TTTCAGATTGTGGAGAAAGA+TGG 0.453818 tig0019280:+57487 Msa1372560:CDS
GACTTGTTTCAGAAATTGGC+TGG 0.453957 tig0019280:+58393 Msa1372560:CDS
GCATATGGGTTGGGAAAAGC+AGG 0.456357 tig0019280:+59155 Msa1372560:CDS
GGCTTCTGCTATTCCACTTG+AGG 0.457095 tig0019280:+58821 Msa1372560:CDS
GCTTTGGTCTTGATCGCCAT+GGG 0.457357 tig0019280:-56910 None:intergenic
AACGAATATCAACAGGACTT+TGG 0.460472 tig0019280:+58625 Msa1372560:CDS
TGATCTTCAATGGATGGAAC+AGG 0.463470 tig0019280:-56815 None:intergenic
AGCCGTTTGCGTTAGGAAGA+AGG 0.466046 tig0019280:+57141 Msa1372560:CDS
ATTCCACCTTTACAACTTGA+AGG 0.467961 tig0019280:+58156 Msa1372560:CDS
TTCTTCAAGAATCTGAGCAT+TGG 0.469470 tig0019280:-56705 None:intergenic
TTGTTCTTGGCATCTGCCAT+TGG 0.473010 tig0019280:-56680 None:intergenic
CTGCACTCAGCTCAAAGAAA+GGG 0.475554 tig0019280:+58778 Msa1372560:CDS
GGTAGTTGATAAAGGGATTG+AGG 0.475867 tig0019280:+57822 Msa1372560:CDS
AGCTCAAAGAAAGGGGAAAG+TGG 0.476835 tig0019280:+58786 Msa1372560:CDS
TTCCTTCTTCCTAACGCAAA+CGG 0.477467 tig0019280:-57143 None:intergenic
TATCTTTCTGACCTCGGTAA+AGG 0.481608 tig0019280:+58219 Msa1372560:CDS
TCATGTGATGCCAACACAAA+AGG 0.482008 tig0019280:-58354 None:intergenic
GAAGAAGAGGAATCATGAAC+TGG 0.483448 tig0019280:-57739 None:intergenic
AGCTTTGGTCTTGATCGCCA+TGG 0.485605 tig0019280:-56911 None:intergenic
CTTGACATCGGGATTTCTCA+TGG 0.485916 tig0019280:-59264 None:intergenic
TAATAATTCAATGAAAATAG+AGG 0.486967 tig0019280:+58026 Msa1372560:CDS
AGGAGAGAACGAATATCAAC+AGG 0.488196 tig0019280:+58618 Msa1372560:CDS
TTGGGAGAGAATGAGAAGAA+AGG 0.488412 tig0019280:+56995 Msa1372560:CDS
CTTGTTCCTACCTTGTACGA+CGG 0.489568 tig0019280:-58523 None:intergenic
TGAAGGGCATGCCGATTCTC+CGG 0.490624 tig0019280:+58173 Msa1372560:CDS
CAGATTGTGGAGAAAGATGG+AGG 0.490639 tig0019280:+57490 Msa1372560:CDS
AGAAGAAAGGGATTTGGAAG+TGG 0.490924 tig0019280:+57008 Msa1372560:CDS
TTATCAACTACCTCAAAATC+CGG 0.493481 tig0019280:-57811 None:intergenic
GAAGGTGGCAGTGCCATTCA+AGG 0.493689 tig0019280:+57685 Msa1372560:CDS
GTCTCATTGGATCCCGCAGT+TGG 0.493983 tig0019280:-58938 None:intergenic
CAAAGGGGCAAGACCTGCTA+TGG 0.494242 tig0019280:+59201 Msa1372560:CDS
GGGAAGAAGACATTGACAAA+GGG 0.498915 tig0019280:+59185 Msa1372560:CDS
AGAAACTATGCGGGCAGCGC+TGG 0.502243 tig0019280:-58559 None:intergenic
GAATCCTTTGGATGTTGTTG+TGG 0.502472 tig0019280:+58290 Msa1372560:CDS
CTGTTTGTTCTCTGTTGAAG+TGG 0.506284 tig0019280:+57075 Msa1372560:CDS
CATCTGCATTGCTAGCTTTG+GGG 0.507161 tig0019280:-58325 None:intergenic
ATGAGACGATATGAAGAAGT+TGG 0.507288 tig0019280:+58954 Msa1372560:CDS
AGGGATTGAGGTTCAAGAGA+AGG 0.509466 tig0019280:+57834 Msa1372560:CDS
TAAAACCATAGAAGAGAAAC+CGG 0.511009 tig0019280:+57882 Msa1372560:CDS
AAACAAGTCAAACCCACTTA+CGG 0.513728 tig0019280:-58379 None:intergenic
GAGTTGTTCGTGGCAAAACA+AGG 0.514347 tig0019280:-56793 None:intergenic
GTCGCATGTCCTTGTCCCCA+TGG 0.514497 tig0019280:+56894 Msa1372560:CDS
TCTGCACTCAGCTCAAAGAA+AGG 0.515153 tig0019280:+58777 Msa1372560:CDS
TTTCAATGCCTCAACTGCCA+TGG 0.518234 tig0019280:-58712 None:intergenic
GAGTATTTCGTCACGGATCG+TGG 0.521965 tig0019280:+59223 Msa1372560:CDS
CAGTTCATCTATCGGCATCA+AGG 0.524088 tig0019280:-58454 None:intergenic
AGCTGTTCTTCGAGCTGTGG+TGG 0.524261 tig0019280:-56768 None:intergenic
TTCCACCTTTACAACTTGAA+GGG 0.526364 tig0019280:+58157 Msa1372560:CDS
CAAGAGAAGGAAGAAGATGA+AGG 0.527000 tig0019280:+57847 Msa1372560:CDS
GAAGGAAGAAGATGAAGGTG+AGG 0.527620 tig0019280:+57852 Msa1372560:CDS
TTTCCCATCAGTTCATCTAT+CGG 0.530475 tig0019280:-58462 None:intergenic
CAGATGAAGAAACTGTGACT+AGG 0.532322 tig0019280:+58070 Msa1372560:CDS
AGATGAAGAAACTGTGACTA+GGG 0.533523 tig0019280:+58071 Msa1372560:CDS
AATGCAGAAGATTGAATCCA+TGG 0.535381 tig0019280:+58695 Msa1372560:CDS
CATGCCGATTCTCCGGAAGA+TGG 0.536713 tig0019280:+58180 Msa1372560:CDS
GCATCACATGAATCCGTAAG+TGG 0.538527 tig0019280:+58366 Msa1372560:CDS
CACGGATCGTGGCTGATATG+TGG 0.539317 tig0019280:+59234 Msa1372560:CDS
GATTGAATCCATGGCAGTTG+AGG 0.540044 tig0019280:+58704 Msa1372560:CDS
AGAGAAACCGGTTGCAGATG+AGG 0.540398 tig0019280:+57894 Msa1372560:CDS
ACTGCTTTCACTGTAAACTT+CGG 0.543612 tig0019280:-56855 None:intergenic
GTTCCACAAATAAGAATGCA+TGG 0.544139 tig0019280:+59090 Msa1372560:CDS
ATCGCGTCAGCCGTCGTACA+AGG 0.544732 tig0019280:+58513 Msa1372560:CDS
GGATGTGTGTGATTTGTAGA+GGG 0.546560 tig0019280:-56747 None:intergenic
TGCAATGGTTAGTTGCATAT+GGG 0.549444 tig0019280:+59141 Msa1372560:CDS
GAGTCTATGATGGGAGATGA+TGG 0.552409 tig0019280:+58000 Msa1372560:CDS
GATATTGGTTGTCCAACTGC+GGG 0.552803 tig0019280:+58926 Msa1372560:CDS
CGGTAAAGGCTTGGGTTGTG+TGG 0.554157 tig0019280:+58233 Msa1372560:CDS
TCTTGATCGCCATGGGGACA+AGG 0.555366 tig0019280:-56903 None:intergenic
TGGCAGTGCCATTCAAGGAA+TGG 0.555467 tig0019280:+57690 Msa1372560:CDS
AGATTGTGGAGAAAGATGGA+GGG 0.556371 tig0019280:+57491 Msa1372560:CDS
TTTCAATGCAGAAACTATGC+GGG 0.556470 tig0019280:-58568 None:intergenic
ATTGAAAATTCAAGCTGAAG+TGG 0.559299 tig0019280:+58728 Msa1372560:CDS
GGGCTAAGGAGGAGGAGAAG+AGG 0.559729 tig0019280:+59024 Msa1372560:CDS
CTTAGTCCGTTCATGGAAGT+AGG 0.560689 tig0019280:-57115 None:intergenic
GTGACGAAATACTCCATAGC+AGG 0.562189 tig0019280:-59214 None:intergenic
CTAGCCACAACAACATCCAA+AGG 0.562371 tig0019280:-58294 None:intergenic
GCATGCCCTTCAAGTTGTAA+AGG 0.562567 tig0019280:-58162 None:intergenic
TGGGGACAAGGACATGCGAC+GGG 0.563051 tig0019280:-56891 None:intergenic
TCACTTTACAAGCTTGACAT+CGG 0.564256 tig0019280:-59276 None:intergenic
TGGATGTGTGTGATTTGTAG+AGG 0.564843 tig0019280:-56748 None:intergenic
CAAAGTAACAAGCATGCATG+TGG 0.566320 tig0019280:+59049 Msa1372560:CDS
GACAGAAACCAAAGAGGTGG+TGG 0.570453 tig0019280:+56952 Msa1372560:CDS
TCATTGTGATCTTCAATGGA+TGG 0.574269 tig0019280:-56821 None:intergenic
TCAAGACCAAAGCTTGAGGA+TGG 0.574280 tig0019280:+56920 Msa1372560:CDS
AAGGTGCACGAGTAAGGCAG+TGG 0.574926 tig0019280:+57404 Msa1372560:CDS
GCTCAAAGAAAGGGGAAAGT+GGG 0.576184 tig0019280:+58787 Msa1372560:CDS
ACTCCTTCGCATTCACATGA+AGG 0.576309 tig0019280:+57667 Msa1372560:CDS
GATTGTGGAGAAAGATGGAG+GGG 0.576647 tig0019280:+57492 Msa1372560:CDS
AAAGCTCTTGAGTCTATGAT+GGG 0.578864 tig0019280:+57991 Msa1372560:CDS
TGCAACACGTTCTGGCACAA+AGG 0.579645 tig0019280:+59001 Msa1372560:CDS
AACTTTCTGGACAGAAGAAG+AGG 0.581837 tig0019280:-57752 None:intergenic
AATGAAAATAGAGGAAGAGA+CGG 0.582509 tig0019280:+58035 Msa1372560:CDS
GGAAGCTGTTCTTCGAGCTG+TGG 0.583506 tig0019280:-56771 None:intergenic
ATGGTTAGTTGCATATGGGT+TGG 0.588597 tig0019280:+59145 Msa1372560:CDS
GGAGTTTCTTCAGATGCTTG+AGG 0.589691 tig0019280:+58092 Msa1372560:CDS
AATCCTCCACTTGTTCTATG+TGG 0.592843 tig0019280:-57780 None:intergenic
GATGGAACAGGAGTTGTTCG+TGG 0.594167 tig0019280:-56803 None:intergenic
TGATGACCACATAGAACAAG+TGG 0.594643 tig0019280:+57774 Msa1372560:CDS
CGTTAGGAAGAAGGAAACAA+AGG 0.595602 tig0019280:+57150 Msa1372560:CDS
AGACGATATGAAGAAGTTGG+AGG 0.596461 tig0019280:+58957 Msa1372560:CDS
AAGTTATCTGGAAAGGCGAA+AGG 0.598430 tig0019280:+57439 Msa1372560:CDS
TGTGTGGTTCAAACAAGAGA+TGG 0.599945 tig0019280:+58249 Msa1372560:CDS
TGCCCTTCAAGTTGTAAAGG+TGG 0.600821 tig0019280:-58159 None:intergenic
TGCACTCAGCTCAAAGAAAG+GGG 0.602008 tig0019280:+58779 Msa1372560:CDS
AAAGACTAACTGCAATGCAA+TGG 0.603303 tig0019280:+59126 Msa1372560:CDS
GTCCGTTCATGGAAGTAGGA+AGG 0.603868 tig0019280:-57111 None:intergenic
TCCGTTGAGAAAAGCCAACA+AGG 0.603895 tig0019280:+57385 Msa1372560:CDS
ATGCCATCACGTGTTTCGCA+AGG 0.606513 tig0019280:+57190 Msa1372560:CDS
GTTTCTTCAGATGCTTGAGG+AGG 0.606539 tig0019280:+58095 Msa1372560:CDS
TGATATTGGTTGTCCAACTG+CGG 0.606602 tig0019280:+58925 Msa1372560:CDS
AGATAAATTGAAAAGGGACG+TGG 0.607650 tig0019280:-57292 None:intergenic
GATGCCGATAGATGAACTGA+TGG 0.613209 tig0019280:+58458 Msa1372560:CDS
TCTCTAATCCAATCCTCAAG+TGG 0.613755 tig0019280:-58834 None:intergenic
TCAGATTCTTGAAGAACTAG+AGG 0.615369 tig0019280:+56712 Msa1372560:CDS
TGCTATGGAGTATTTCGTCA+CGG 0.616016 tig0019280:+59216 Msa1372560:CDS
GAGGTCAGAAAGATATACTT+CGG 0.619421 tig0019280:-58211 None:intergenic
CGTCAGCCGTCGTACAAGGT+AGG 0.620909 tig0019280:+58517 Msa1372560:CDS
GACCTTCCTACTTCCATGAA+CGG 0.621492 tig0019280:+57109 Msa1372560:CDS
GGTTGCAGATGAGGTTGTGA+AGG 0.621662 tig0019280:+57903 Msa1372560:CDS
CTGAGTGCAGAAACATCGAA+TGG 0.625191 tig0019280:-58765 None:intergenic
TGTTGTTGGTATAATAAGCA+TGG 0.627355 tig0019280:-57249 None:intergenic
GAAGTATATCTTTCTGACCT+CGG 0.627389 tig0019280:+58213 Msa1372560:CDS
GTAAAGGTGGAATTTCAGGT+TGG 0.628299 tig0019280:-58146 None:intergenic
CATCACATGAATCCGTAAGT+GGG 0.628342 tig0019280:+58367 Msa1372560:CDS
ATATGTGAAAGTGCACGCAT+CGG 0.629019 tig0019280:-57034 None:intergenic
CAAAGCTTAAGCTACAACAA+AGG 0.630317 tig0019280:+58858 Msa1372560:CDS
TTTGGATTGTTTGCGTGCGA+AGG 0.630319 tig0019280:-57593 None:intergenic
AGGGAAGAAGACATTGACAA+AGG 0.631341 tig0019280:+59184 Msa1372560:CDS
GGCATTGGTCTTGATGAACT+CGG 0.632439 tig0019280:+58414 Msa1372560:CDS
AAGGACATGCGACGGGATCG+AGG 0.632471 tig0019280:-56884 None:intergenic
CCACCTTCATGTGAATGCGA+AGG 0.633028 tig0019280:-57670 None:intergenic
TTCCACAAATAAGAATGCAT+GGG 0.633963 tig0019280:+59091 Msa1372560:CDS
GCGATCAAGACCAAAGCTTG+AGG 0.634062 tig0019280:+56916 Msa1372560:CDS
GAGCTTCAAGTTATCTGGAA+AGG 0.635002 tig0019280:+57432 Msa1372560:CDS
GCCGATTCTCCGGAAGATGG+AGG 0.639156 tig0019280:+58183 Msa1372560:CDS
ATGGGGACAAGGACATGCGA+CGG 0.641046 tig0019280:-56892 None:intergenic
CGTCGTACAAGGTAGGAACA+AGG 0.643621 tig0019280:+58524 Msa1372560:CDS
AAAGTAACAAGCATGCATGT+GGG 0.649857 tig0019280:+59050 Msa1372560:CDS
CAAGACAGAAACCAAAGAGG+TGG 0.653529 tig0019280:+56949 Msa1372560:CDS
TCTAGGACTAGGCACACTGA+AGG 0.657190 tig0019280:-57620 None:intergenic
GAGGAGGATCAAGACAGCAA+AGG 0.657946 tig0019280:+58111 Msa1372560:CDS
AACACGTTCTGGCACAAAGG+GGG 0.659062 tig0019280:+59004 Msa1372560:CDS
GCTCCTTGCGAAACACGTGA+TGG 0.659072 tig0019280:-57193 None:intergenic
CAAACATTATCAGTTCAGGA+AGG 0.660678 tig0019280:+58598 Msa1372560:CDS
CAAGCTCAGACAATCTAGCA+TGG 0.661428 tig0019280:-57948 None:intergenic
AGGAAGAAGGAAACAAAGGA+TGG 0.665822 tig0019280:+57154 Msa1372560:CDS
GGAAGAAGACATTGACAAAG+GGG 0.668001 tig0019280:+59186 Msa1372560:CDS
GTAACAAGCATGCATGTGGG+TGG 0.668323 tig0019280:+59053 Msa1372560:CDS
CCTTCGCATTCACATGAAGG+TGG 0.668486 tig0019280:+57670 Msa1372560:CDS
ATGCCGATAGATGAACTGAT+GGG 0.669377 tig0019280:+58459 Msa1372560:CDS
AGGTGCACGAGTAAGGCAGT+GGG 0.671222 tig0019280:+57405 Msa1372560:CDS
GCATGAATAAGCACCATCGT+AGG 0.672184 tig0019280:-58981 None:intergenic
TTATCTGGAAAGGCGAAAGG+AGG 0.674087 tig0019280:+57442 Msa1372560:CDS
GTACAAGGTAGGAACAAGGA+AGG 0.681269 tig0019280:+58528 Msa1372560:CDS
TTCCAAGACAGAAACCAAAG+AGG 0.681865 tig0019280:+56946 Msa1372560:CDS
AGTTGTTCGTGGCAAAACAA+GGG 0.685686 tig0019280:-56792 None:intergenic
TTCATCTATCGGCATCAAGG+AGG 0.688397 tig0019280:-58451 None:intergenic
TGACCACATAGAACAAGTGG+AGG 0.689391 tig0019280:+57777 Msa1372560:CDS
GTGGTTCAAACAAGAGATGG+CGG 0.692152 tig0019280:+58252 Msa1372560:CDS
AGAAGTTGGAGGACCTACGA+TGG 0.697633 tig0019280:+58968 Msa1372560:CDS
TGACAAGCAGAAACGACGCG+TGG 0.698961 tig0019280:+57644 Msa1372560:CDS
CTTTGGTCTTGATCGCCATG+GGG 0.700721 tig0019280:-56909 None:intergenic
CAACACGTTCTGGCACAAAG+GGG 0.715647 tig0019280:+59003 Msa1372560:CDS
CATATGGGTTGGGAAAAGCA+GGG 0.739417 tig0019280:+59156 Msa1372560:CDS
CACAACCCAAGCCTTTACCG+AGG 0.745080 tig0019280:-58230 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAATTCAATGAAAATAG+AGG + tig0019280:58026-58045 Msa1372560:CDS 15.0%
!! GCAAAAAGATAAATTGAAAA+GGG - tig0019280:57301-57320 None:intergenic 20.0%
!! AGCAAAAAGATAAATTGAAA+AGG - tig0019280:57302-57321 None:intergenic 20.0%
! TAACACATCAACAACTAATT+TGG + tig0019280:56976-56995 Msa1372560:CDS 25.0%
! AACACATCAACAACTAATTT+GGG + tig0019280:56977-56996 Msa1372560:CDS 25.0%
!!! ATTTTGAGGTAGTTGATAAA+GGG + tig0019280:57815-57834 Msa1372560:CDS 25.0%
ATTGTCATTGTGATCTTCAA+TGG - tig0019280:56828-56847 None:intergenic 30.0%
TGTTGTTGGTATAATAAGCA+TGG - tig0019280:57252-57271 None:intergenic 30.0%
TTATCAACTACCTCAAAATC+CGG - tig0019280:57814-57833 None:intergenic 30.0%
!!! GATTTTGAGGTAGTTGATAA+AGG + tig0019280:57814-57833 Msa1372560:CDS 30.0%
TAAAACCATAGAAGAGAAAC+CGG + tig0019280:57882-57901 Msa1372560:CDS 30.0%
AATGAAAATAGAGGAAGAGA+CGG + tig0019280:58035-58054 Msa1372560:CDS 30.0%
!! GTTTGACTTGTTTCAGAAAT+TGG + tig0019280:58389-58408 Msa1372560:CDS 30.0%
! TTTTCAATGCAGAAACTATG+CGG - tig0019280:58572-58591 None:intergenic 30.0%
ATGTCAAACATTATCAGTTC+AGG + tig0019280:58594-58613 Msa1372560:CDS 30.0%
ATTGAAAATTCAAGCTGAAG+TGG + tig0019280:58728-58747 Msa1372560:CDS 30.0%
TTCCACAAATAAGAATGCAT+GGG + tig0019280:59091-59110 Msa1372560:CDS 30.0%
TCTTCAAGAATCTGAGCATT+GGG - tig0019280:56707-56726 None:intergenic 35.0%
TTCTTCAAGAATCTGAGCAT+TGG - tig0019280:56708-56727 None:intergenic 35.0%
TCAGATTCTTGAAGAACTAG+AGG + tig0019280:56712-56731 Msa1372560:CDS 35.0%
TCATTGTGATCTTCAATGGA+TGG - tig0019280:56824-56843 None:intergenic 35.0%
ACTGCTTTCACTGTAAACTT+CGG - tig0019280:56858-56877 None:intergenic 35.0%
AGAATGAGAAGAAAGGGATT+TGG + tig0019280:57002-57021 Msa1372560:CDS 35.0%
CTTCTTCTCATGATTGTTGT+TGG - tig0019280:57266-57285 None:intergenic 35.0%
AGATAAATTGAAAAGGGACG+TGG - tig0019280:57295-57314 None:intergenic 35.0%
!! GAAACTTGGTTTTCAGATTG+TGG + tig0019280:57477-57496 Msa1372560:CDS 35.0%
TTTCAGATTGTGGAGAAAGA+TGG + tig0019280:57487-57506 Msa1372560:CDS 35.0%
AGGAATCATGAACTGGATTT+GGG - tig0019280:57735-57754 None:intergenic 35.0%
! TTTTGATCTTCCGGATTTTG+AGG + tig0019280:57801-57820 Msa1372560:CDS 35.0%
AAAAGCTCTTGAGTCTATGA+TGG + tig0019280:57990-58009 Msa1372560:CDS 35.0%
AAAGCTCTTGAGTCTATGAT+GGG + tig0019280:57991-58010 Msa1372560:CDS 35.0%
AGATGAAGAAACTGTGACTA+GGG + tig0019280:58071-58090 Msa1372560:CDS 35.0%
AGTTGTAAAGGTGGAATTTC+AGG - tig0019280:58153-58172 None:intergenic 35.0%
ATTCCACCTTTACAACTTGA+AGG + tig0019280:58156-58175 Msa1372560:CDS 35.0%
TTCCACCTTTACAACTTGAA+GGG + tig0019280:58157-58176 Msa1372560:CDS 35.0%
GAGGTCAGAAAGATATACTT+CGG - tig0019280:58214-58233 None:intergenic 35.0%
GAAGTATATCTTTCTGACCT+CGG + tig0019280:58213-58232 Msa1372560:CDS 35.0%
AACAACATCCAAAGGATTCA+TGG - tig0019280:58289-58308 None:intergenic 35.0%
AAACAAGTCAAACCCACTTA+CGG - tig0019280:58382-58401 None:intergenic 35.0%
TTTCCCATCAGTTCATCTAT+CGG - tig0019280:58465-58484 None:intergenic 35.0%
TTTCAATGCAGAAACTATGC+GGG - tig0019280:58571-58590 None:intergenic 35.0%
CAAACATTATCAGTTCAGGA+AGG + tig0019280:58598-58617 Msa1372560:CDS 35.0%
AACGAATATCAACAGGACTT+TGG + tig0019280:58625-58644 Msa1372560:CDS 35.0%
AATGCAGAAGATTGAATCCA+TGG + tig0019280:58695-58714 Msa1372560:CDS 35.0%
! CTTTGTTGTAGCTTAAGCTT+TGG - tig0019280:58860-58879 None:intergenic 35.0%
CAAAGCTTAAGCTACAACAA+AGG + tig0019280:58858-58877 Msa1372560:CDS 35.0%
ACTTCTTCATATCGTCTCAT+TGG - tig0019280:58954-58973 None:intergenic 35.0%
ATGAGACGATATGAAGAAGT+TGG + tig0019280:58954-58973 Msa1372560:CDS 35.0%
AAAGTAACAAGCATGCATGT+GGG + tig0019280:59050-59069 Msa1372560:CDS 35.0%
GTTCCACAAATAAGAATGCA+TGG + tig0019280:59090-59109 Msa1372560:CDS 35.0%
AAAGACTAACTGCAATGCAA+TGG + tig0019280:59126-59145 Msa1372560:CDS 35.0%
! ATGCAATGGTTAGTTGCATA+TGG + tig0019280:59140-59159 Msa1372560:CDS 35.0%
! TGCAATGGTTAGTTGCATAT+GGG + tig0019280:59141-59160 Msa1372560:CDS 35.0%
TCACTTTACAAGCTTGACAT+CGG - tig0019280:59279-59298 None:intergenic 35.0%
! GGATGTGTGTGATTTGTAGA+GGG - tig0019280:56750-56769 None:intergenic 40.0%
! TGGATGTGTGTGATTTGTAG+AGG - tig0019280:56751-56770 None:intergenic 40.0%
AGTTGTTCGTGGCAAAACAA+GGG - tig0019280:56795-56814 None:intergenic 40.0%
TGATCTTCAATGGATGGAAC+AGG - tig0019280:56818-56837 None:intergenic 40.0%
GAAATTCCATCCTCAAGCTT+TGG - tig0019280:56929-56948 None:intergenic 40.0%
TTCCAAGACAGAAACCAAAG+AGG + tig0019280:56946-56965 Msa1372560:CDS 40.0%
TTGGGAGAGAATGAGAAGAA+AGG + tig0019280:56995-57014 Msa1372560:CDS 40.0%
TGGGAGAGAATGAGAAGAAA+GGG + tig0019280:56996-57015 Msa1372560:CDS 40.0%
AGAAGAAAGGGATTTGGAAG+TGG + tig0019280:57008-57027 Msa1372560:CDS 40.0%
! ATATGTGAAAGTGCACGCAT+CGG - tig0019280:57037-57056 None:intergenic 40.0%
ATGCGTGCACTTTCACATAT+TGG + tig0019280:57037-57056 Msa1372560:CDS 40.0%
CTGTTTGTTCTCTGTTGAAG+TGG + tig0019280:57075-57094 Msa1372560:CDS 40.0%
TTCCTTCTTCCTAACGCAAA+CGG - tig0019280:57146-57165 None:intergenic 40.0%
CGTTAGGAAGAAGGAAACAA+AGG + tig0019280:57150-57169 Msa1372560:CDS 40.0%
AGGAAGAAGGAAACAAAGGA+TGG + tig0019280:57154-57173 Msa1372560:CDS 40.0%
!! GGATTTTGGAAGAAGCTATG+TGG + tig0019280:57339-57358 Msa1372560:CDS 40.0%
!!! ACCTTGTTGGCTTTTCTCAA+CGG - tig0019280:57389-57408 None:intergenic 40.0%
! GATACGAGCTTCAAGTTATC+TGG + tig0019280:57427-57446 Msa1372560:CDS 40.0%
! GAGCTTCAAGTTATCTGGAA+AGG + tig0019280:57432-57451 Msa1372560:CDS 40.0%
AAGTTATCTGGAAAGGCGAA+AGG + tig0019280:57439-57458 Msa1372560:CDS 40.0%
!! GGAGAACTTGTTGTGAAACT+TGG + tig0019280:57463-57482 Msa1372560:CDS 40.0%
AGATTGTGGAGAAAGATGGA+GGG + tig0019280:57491-57510 Msa1372560:CDS 40.0%
CTGGACTTTGAATTCTGCAT+TGG - tig0019280:57550-57569 None:intergenic 40.0%
TGACAAACTACTCAACTTGC+TGG - tig0019280:57569-57588 None:intergenic 40.0%
TCGTTTCTGCTTGTCATTCT+AGG - tig0019280:57640-57659 None:intergenic 40.0%
CAAATCGTCCATTCCTTGAA+TGG - tig0019280:57701-57720 None:intergenic 40.0%
GAGGAATCATGAACTGGATT+TGG - tig0019280:57736-57755 None:intergenic 40.0%
GAAGAAGAGGAATCATGAAC+TGG - tig0019280:57742-57761 None:intergenic 40.0%
AACTTTCTGGACAGAAGAAG+AGG - tig0019280:57755-57774 None:intergenic 40.0%
CTATGTGGTCATCAACTTTC+TGG - tig0019280:57768-57787 None:intergenic 40.0%
TGATGACCACATAGAACAAG+TGG + tig0019280:57774-57793 Msa1372560:CDS 40.0%
AATCCTCCACTTGTTCTATG+TGG - tig0019280:57783-57802 None:intergenic 40.0%
!! AGTGGAGGATTTTGATCTTC+CGG + tig0019280:57792-57811 Msa1372560:CDS 40.0%
!! GGTAGTTGATAAAGGGATTG+AGG + tig0019280:57822-57841 Msa1372560:CDS 40.0%
CAAGAGAAGGAAGAAGATGA+AGG + tig0019280:57847-57866 Msa1372560:CDS 40.0%
CAGATGAAGAAACTGTGACT+AGG + tig0019280:58070-58089 Msa1372560:CDS 40.0%
! GTAAAGGTGGAATTTCAGGT+TGG - tig0019280:58149-58168 None:intergenic 40.0%
TATCTTTCTGACCTCGGTAA+AGG + tig0019280:58219-58238 Msa1372560:CDS 40.0%
TGTGTGGTTCAAACAAGAGA+TGG + tig0019280:58249-58268 Msa1372560:CDS 40.0%
GAATCCTTTGGATGTTGTTG+TGG + tig0019280:58290-58309 Msa1372560:CDS 40.0%
!! ACATCTGCATTGCTAGCTTT+GGG - tig0019280:58329-58348 None:intergenic 40.0%
! GATGTCAAAGCCTTTTGTGT+TGG + tig0019280:58344-58363 Msa1372560:CDS 40.0%
TCATGTGATGCCAACACAAA+AGG - tig0019280:58357-58376 None:intergenic 40.0%
CATCACATGAATCCGTAAGT+GGG + tig0019280:58367-58386 Msa1372560:CDS 40.0%
! GACTTGTTTCAGAAATTGGC+TGG + tig0019280:58393-58412 Msa1372560:CDS 40.0%
TTTCAGAAATTGGCTGGCAT+TGG + tig0019280:58399-58418 Msa1372560:CDS 40.0%
ATGCCGATAGATGAACTGAT+GGG + tig0019280:58459-58478 Msa1372560:CDS 40.0%
AGGAGAGAACGAATATCAAC+AGG + tig0019280:58618-58637 Msa1372560:CDS 40.0%
!! AGAAGCTTCTCTGAAGTAAC+TGG - tig0019280:58666-58685 None:intergenic 40.0%
ATCGAATGGAGCTTCTTCTT+CGG - tig0019280:58754-58773 None:intergenic 40.0%
! GGAAAGTGGGAAAGATCTTT+TGG + tig0019280:58800-58819 Msa1372560:CDS 40.0%
TCTCTAATCCAATCCTCAAG+TGG - tig0019280:58837-58856 None:intergenic 40.0%
! ACTGCAACTGCAAGTTCTAA+TGG + tig0019280:58882-58901 Msa1372560:CDS 40.0%
AATATCAGCGTGACTCTTTC+AGG - tig0019280:58912-58931 None:intergenic 40.0%
TGAAAGAGTCACGCTGATAT+TGG + tig0019280:58911-58930 Msa1372560:CDS 40.0%
! TGATATTGGTTGTCCAACTG+CGG + tig0019280:58925-58944 Msa1372560:CDS 40.0%
AGACGATATGAAGAAGTTGG+AGG + tig0019280:58957-58976 Msa1372560:CDS 40.0%
CTTATTCATGCAACACGTTC+TGG + tig0019280:58993-59012 Msa1372560:CDS 40.0%
CAAAGTAACAAGCATGCATG+TGG + tig0019280:59049-59068 Msa1372560:CDS 40.0%
ATGTGGGTGGTTTCAAAGTT+AGG + tig0019280:59066-59085 Msa1372560:CDS 40.0%
! GTCCCATGCATTCTTATTTG+TGG - tig0019280:59096-59115 None:intergenic 40.0%
! ATGGTTAGTTGCATATGGGT+TGG + tig0019280:59145-59164 Msa1372560:CDS 40.0%
! TGGTTAGTTGCATATGGGTT+GGG + tig0019280:59146-59165 Msa1372560:CDS 40.0%
AGGGAAGAAGACATTGACAA+AGG + tig0019280:59184-59203 Msa1372560:CDS 40.0%
GGGAAGAAGACATTGACAAA+GGG + tig0019280:59185-59204 Msa1372560:CDS 40.0%
GGAAGAAGACATTGACAAAG+GGG + tig0019280:59186-59205 Msa1372560:CDS 40.0%
! TGCTATGGAGTATTTCGTCA+CGG + tig0019280:59216-59235 Msa1372560:CDS 40.0%
CACTTTACAAGCTTGACATC+GGG - tig0019280:59278-59297 None:intergenic 40.0%
!! CTGAGCATTGGGATTGTTCT+TGG - tig0019280:56696-56715 None:intergenic 45.0%
GAGTTGTTCGTGGCAAAACA+AGG - tig0019280:56796-56815 None:intergenic 45.0%
TCAAGACCAAAGCTTGAGGA+TGG + tig0019280:56920-56939 Msa1372560:CDS 45.0%
! CACCTCTTTGGTTTCTGTCT+TGG - tig0019280:56951-56970 None:intergenic 45.0%
CAAGACAGAAACCAAAGAGG+TGG + tig0019280:56949-56968 Msa1372560:CDS 45.0%
TGTGTTAACCACCACCTCTT+TGG - tig0019280:56963-56982 None:intergenic 45.0%
GACCTTCCTACTTCCATGAA+CGG + tig0019280:57109-57128 Msa1372560:CDS 45.0%
CTTAGTCCGTTCATGGAAGT+AGG - tig0019280:57118-57137 None:intergenic 45.0%
! TAAGACTAGCCGTTTGCGTT+AGG + tig0019280:57134-57153 Msa1372560:CDS 45.0%
! GATGCTCAAGAGCTGGATTT+TGG + tig0019280:57325-57344 Msa1372560:CDS 45.0%
TCCGTTGAGAAAAGCCAACA+AGG + tig0019280:57385-57404 Msa1372560:CDS 45.0%
TTATCTGGAAAGGCGAAAGG+AGG + tig0019280:57442-57461 Msa1372560:CDS 45.0%
CAGATTGTGGAGAAAGATGG+AGG + tig0019280:57490-57509 Msa1372560:CDS 45.0%
GATTGTGGAGAAAGATGGAG+GGG + tig0019280:57492-57511 Msa1372560:CDS 45.0%
TTTGGATTGTTTGCGTGCGA+AGG - tig0019280:57596-57615 None:intergenic 45.0%
AGGCACACTGAAGGATGATT+TGG - tig0019280:57614-57633 None:intergenic 45.0%
!! CTGCTTGTCATTCTAGGACT+AGG - tig0019280:57634-57653 None:intergenic 45.0%
ACTCCTTCGCATTCACATGA+AGG + tig0019280:57667-57686 Msa1372560:CDS 45.0%
TGACCACATAGAACAAGTGG+AGG + tig0019280:57777-57796 Msa1372560:CDS 45.0%
AGGGATTGAGGTTCAAGAGA+AGG + tig0019280:57834-57853 Msa1372560:CDS 45.0%
GAAGGAAGAAGATGAAGGTG+AGG + tig0019280:57852-57871 Msa1372560:CDS 45.0%
! TGCAACCGGTTTCTCTTCTA+TGG - tig0019280:57890-57909 None:intergenic 45.0%
TTCACAACCTCATCTGCAAC+CGG - tig0019280:57904-57923 None:intergenic 45.0%
CAAGCTCAGACAATCTAGCA+TGG - tig0019280:57951-57970 None:intergenic 45.0%
! GAGTCTATGATGGGAGATGA+TGG + tig0019280:58000-58019 Msa1372560:CDS 45.0%
AGAGGAAGAGACGGAATCAT+TGG + tig0019280:58044-58063 Msa1372560:CDS 45.0%
GGAGTTTCTTCAGATGCTTG+AGG + tig0019280:58092-58111 Msa1372560:CDS 45.0%
GTTTCTTCAGATGCTTGAGG+AGG + tig0019280:58095-58114 Msa1372560:CDS 45.0%
!! TGCCCTTCAAGTTGTAAAGG+TGG - tig0019280:58162-58181 None:intergenic 45.0%
!! GCATGCCCTTCAAGTTGTAA+AGG - tig0019280:58165-58184 None:intergenic 45.0%
GTGGTTCAAACAAGAGATGG+CGG + tig0019280:58252-58271 Msa1372560:CDS 45.0%
!! AACAAGAGATGGCGGATACT+TGG + tig0019280:58260-58279 Msa1372560:CDS 45.0%
CTTGGCTTCCATGAATCCTT+TGG + tig0019280:58278-58297 Msa1372560:CDS 45.0%
CTAGCCACAACAACATCCAA+AGG - tig0019280:58297-58316 None:intergenic 45.0%
!! CATCTGCATTGCTAGCTTTG+GGG - tig0019280:58328-58347 None:intergenic 45.0%
! GACATCTGCATTGCTAGCTT+TGG - tig0019280:58330-58349 None:intergenic 45.0%
GCATCACATGAATCCGTAAG+TGG + tig0019280:58366-58385 Msa1372560:CDS 45.0%
!! GGCATTGGTCTTGATGAACT+CGG + tig0019280:58414-58433 Msa1372560:CDS 45.0%
TTCATCTATCGGCATCAAGG+AGG - tig0019280:58454-58473 None:intergenic 45.0%
CAGTTCATCTATCGGCATCA+AGG - tig0019280:58457-58476 None:intergenic 45.0%
GATGCCGATAGATGAACTGA+TGG + tig0019280:58458-58477 Msa1372560:CDS 45.0%
TCAAAAGCAATCTGCTCTGC+AGG - tig0019280:58489-58508 None:intergenic 45.0%
!! GCAGAGCAGATTGCTTTTGA+AGG + tig0019280:58489-58508 Msa1372560:CDS 45.0%
CTTGTTCCTACCTTGTACGA+CGG - tig0019280:58526-58545 None:intergenic 45.0%
GTACAAGGTAGGAACAAGGA+AGG + tig0019280:58528-58547 Msa1372560:CDS 45.0%
GATTGAATCCATGGCAGTTG+AGG + tig0019280:58704-58723 Msa1372560:CDS 45.0%
TTTCAATGCCTCAACTGCCA+TGG - tig0019280:58715-58734 None:intergenic 45.0%
CTGAGTGCAGAAACATCGAA+TGG - tig0019280:58768-58787 None:intergenic 45.0%
TCTGCACTCAGCTCAAAGAA+AGG + tig0019280:58777-58796 Msa1372560:CDS 45.0%
CTGCACTCAGCTCAAAGAAA+GGG + tig0019280:58778-58797 Msa1372560:CDS 45.0%
TGCACTCAGCTCAAAGAAAG+GGG + tig0019280:58779-58798 Msa1372560:CDS 45.0%
AGCTCAAAGAAAGGGGAAAG+TGG + tig0019280:58786-58805 Msa1372560:CDS 45.0%
GCTCAAAGAAAGGGGAAAGT+GGG + tig0019280:58787-58806 Msa1372560:CDS 45.0%
CTGCTATTCCACTTGAGGAT+TGG + tig0019280:58826-58845 Msa1372560:CDS 45.0%
! GATATTGGTTGTCCAACTGC+GGG + tig0019280:58926-58945 Msa1372560:CDS 45.0%
GCATGAATAAGCACCATCGT+AGG - tig0019280:58984-59003 None:intergenic 45.0%
!! CATATGGGTTGGGAAAAGCA+GGG + tig0019280:59156-59175 Msa1372560:CDS 45.0%
TTGGGAAAAGCAGGGAAGAA+AGG + tig0019280:59164-59183 Msa1372560:CDS 45.0%
TGGGAAAAGCAGGGAAGAAA+GGG + tig0019280:59165-59184 Msa1372560:CDS 45.0%
GTGACGAAATACTCCATAGC+AGG - tig0019280:59217-59236 None:intergenic 45.0%
CTTGACATCGGGATTTCTCA+TGG - tig0019280:59267-59286 None:intergenic 45.0%
GATGGAACAGGAGTTGTTCG+TGG - tig0019280:56806-56825 None:intergenic 50.0%
!! CTTTGGTCTTGATCGCCATG+GGG - tig0019280:56912-56931 None:intergenic 50.0%
!! GCTTTGGTCTTGATCGCCAT+GGG - tig0019280:56913-56932 None:intergenic 50.0%
!! AGCTTTGGTCTTGATCGCCA+TGG - tig0019280:56914-56933 None:intergenic 50.0%
GCGATCAAGACCAAAGCTTG+AGG + tig0019280:56916-56935 Msa1372560:CDS 50.0%
GACAGAAACCAAAGAGGTGG+TGG + tig0019280:56952-56971 Msa1372560:CDS 50.0%
GTCCGTTCATGGAAGTAGGA+AGG - tig0019280:57114-57133 None:intergenic 50.0%
!! GGCTAGTCTTAGTCCGTTCA+TGG - tig0019280:57125-57144 None:intergenic 50.0%
AGCCGTTTGCGTTAGGAAGA+AGG + tig0019280:57141-57160 Msa1372560:CDS 50.0%
ATGCCATCACGTGTTTCGCA+AGG + tig0019280:57190-57209 Msa1372560:CDS 50.0%
TGCTGTTGATGCTCAAGAGC+TGG + tig0019280:57318-57337 Msa1372560:CDS 50.0%
! TCTAGGACTAGGCACACTGA+AGG - tig0019280:57623-57642 None:intergenic 50.0%
CCACCTTCATGTGAATGCGA+AGG - tig0019280:57673-57692 None:intergenic 50.0%
CCTTCGCATTCACATGAAGG+TGG + tig0019280:57670-57689 Msa1372560:CDS 50.0%
! TGGCAGTGCCATTCAAGGAA+TGG + tig0019280:57690-57709 Msa1372560:CDS 50.0%
AGAGAAACCGGTTGCAGATG+AGG + tig0019280:57894-57913 Msa1372560:CDS 50.0%
GGTTGCAGATGAGGTTGTGA+AGG + tig0019280:57903-57922 Msa1372560:CDS 50.0%
GAGGAGGATCAAGACAGCAA+AGG + tig0019280:58111-58130 Msa1372560:CDS 50.0%
TCCTCCATCTTCCGGAGAAT+CGG - tig0019280:58187-58206 None:intergenic 50.0%
TCGGATTCTCCTCCATCTTC+CGG - tig0019280:58195-58214 None:intergenic 50.0%
TTCTGACCTCGGTAAAGGCT+TGG + tig0019280:58224-58243 Msa1372560:CDS 50.0%
TCTGACCTCGGTAAAGGCTT+GGG + tig0019280:58225-58244 Msa1372560:CDS 50.0%
CGTCGTACAAGGTAGGAACA+AGG + tig0019280:58524-58543 Msa1372560:CDS 50.0%
GGCTTCTGCTATTCCACTTG+AGG + tig0019280:58821-58840 Msa1372560:CDS 50.0%
AGAAGTTGGAGGACCTACGA+TGG + tig0019280:58968-58987 Msa1372560:CDS 50.0%
TGCAACACGTTCTGGCACAA+AGG + tig0019280:59001-59020 Msa1372560:CDS 50.0%
GCAACACGTTCTGGCACAAA+GGG + tig0019280:59002-59021 Msa1372560:CDS 50.0%
CAACACGTTCTGGCACAAAG+GGG + tig0019280:59003-59022 Msa1372560:CDS 50.0%
AACACGTTCTGGCACAAAGG+GGG + tig0019280:59004-59023 Msa1372560:CDS 50.0%
GTAACAAGCATGCATGTGGG+TGG + tig0019280:59053-59072 Msa1372560:CDS 50.0%
!! GCATATGGGTTGGGAAAAGC+AGG + tig0019280:59155-59174 Msa1372560:CDS 50.0%
GAGTATTTCGTCACGGATCG+TGG + tig0019280:59223-59242 Msa1372560:CDS 50.0%
AGCTGTTCTTCGAGCTGTGG+TGG - tig0019280:56771-56790 None:intergenic 55.0%
GGAAGCTGTTCTTCGAGCTG+TGG - tig0019280:56774-56793 None:intergenic 55.0%
ATGGGGACAAGGACATGCGA+CGG - tig0019280:56895-56914 None:intergenic 55.0%
TCTTGATCGCCATGGGGACA+AGG - tig0019280:56906-56925 None:intergenic 55.0%
GCTCCTTGCGAAACACGTGA+TGG - tig0019280:57196-57215 None:intergenic 55.0%
GCCAACAAGGTGCACGAGTA+AGG + tig0019280:57398-57417 Msa1372560:CDS 55.0%
GCCTTACTCGTGCACCTTGT+TGG - tig0019280:57402-57421 None:intergenic 55.0%
AAGGTGCACGAGTAAGGCAG+TGG + tig0019280:57404-57423 Msa1372560:CDS 55.0%
AGGTGCACGAGTAAGGCAGT+GGG + tig0019280:57405-57424 Msa1372560:CDS 55.0%
TGACAAGCAGAAACGACGCG+TGG + tig0019280:57644-57663 Msa1372560:CDS 55.0%
! GAAGGTGGCAGTGCCATTCA+AGG + tig0019280:57685-57704 Msa1372560:CDS 55.0%
!! TGAAGGGCATGCCGATTCTC+CGG + tig0019280:58173-58192 Msa1372560:CDS 55.0%
!! CATGCCGATTCTCCGGAAGA+TGG + tig0019280:58180-58199 Msa1372560:CDS 55.0%
CACAACCCAAGCCTTTACCG+AGG - tig0019280:58233-58252 None:intergenic 55.0%
! CGGTAAAGGCTTGGGTTGTG+TGG + tig0019280:58233-58252 Msa1372560:CDS 55.0%
GTCTCATTGGATCCCGCAGT+TGG - tig0019280:58941-58960 None:intergenic 55.0%
TTCTGGCACAAAGGGGGCTA+AGG + tig0019280:59010-59029 Msa1372560:CDS 55.0%
CAAAGGGGCAAGACCTGCTA+TGG + tig0019280:59201-59220 Msa1372560:CDS 55.0%
CACGGATCGTGGCTGATATG+TGG + tig0019280:59234-59253 Msa1372560:CDS 55.0%
AAGGACATGCGACGGGATCG+AGG - tig0019280:56887-56906 None:intergenic 60.0%
TGGGGACAAGGACATGCGAC+GGG - tig0019280:56894-56913 None:intergenic 60.0%
GTCGCATGTCCTTGTCCCCA+TGG + tig0019280:56894-56913 Msa1372560:CDS 60.0%
! GCCGATTCTCCGGAAGATGG+AGG + tig0019280:58183-58202 Msa1372560:CDS 60.0%
ATCGCGTCAGCCGTCGTACA+AGG + tig0019280:58513-58532 Msa1372560:CDS 60.0%
CGTCAGCCGTCGTACAAGGT+AGG + tig0019280:58517-58536 Msa1372560:CDS 60.0%
AGAAACTATGCGGGCAGCGC+TGG - tig0019280:58562-58581 None:intergenic 60.0%
TGGCACAAAGGGGGCTAAGG+AGG + tig0019280:59013-59032 Msa1372560:CDS 60.0%
CACAAAGGGGGCTAAGGAGG+AGG + tig0019280:59016-59035 Msa1372560:CDS 60.0%
GGGCTAAGGAGGAGGAGAAG+AGG + tig0019280:59024-59043 Msa1372560:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0019280 gene 56683 59298 56683 ID=Msa1372560;Name=Msa1372560
tig0019280 mRNA 56683 59298 56683 ID=Msa1372560-mRNA-1;Parent=Msa1372560;Name=Msa1372560-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|-1|0|1|-1|1|1|0|871
tig0019280 exon 56683 59298 56683 ID=Msa1372560-mRNA-1:exon:2797;Parent=Msa1372560-mRNA-1
tig0019280 CDS 56683 59298 56683 ID=Msa1372560-mRNA-1:cds;Parent=Msa1372560-mRNA-1
Gene Sequence

>Msa1372560

ATGGCAGATGCCAAGAACAATCCCAATGCTCAGATTCTTGAAGAACTAGAGGCTCTGAGTGAAACCCTCTACAAATCACACACATCCACCACAGCTCGAAGAACAGCTTCCCTTGTTTTGCCACGAACAACTCCTGTTCCATCCATTGAAGATCACAATGACAATCACGCAACCGAAGTTTACAGTGAAAGCAGTAACAAACCTCGATCCCGTCGCATGTCCTTGTCCCCATGGCGATCAAGACCAAAGCTTGAGGATGGAATTTCCAAGACAGAAACCAAAGAGGTGGTGGTTAACACATCAACAACTAATTTGGGAGAGAATGAGAAGAAAGGGATTTGGAAGTGGAAGCCGATGCGTGCACTTTCACATATTGGAATGCAGAAACTAAGCTGTTTGTTCTCTGTTGAAGTGGTAGCTGCTCAAGACCTTCCTACTTCCATGAACGGACTAAGACTAGCCGTTTGCGTTAGGAAGAAGGAAACAAAGGATGGTGCTGTTAAGACAATGCCATCACGTGTTTCGCAAGGAGCTGCTGATTTCGAAGAGACACTTTTCATCAAGTGCCATGCTTATTATACCAACAACAATCATGAGAAGAAGTTTGAGCCACGTCCCTTTTCAATTTATCTTTTTGCTGTTGATGCTCAAGAGCTGGATTTTGGAAGAAGCTATGTGGATTTGAGCGAGTTGATTCGAGAGTCCGTTGAGAAAAGCCAACAAGGTGCACGAGTAAGGCAGTGGGATACGAGCTTCAAGTTATCTGGAAAGGCGAAAGGAGGAGAACTTGTTGTGAAACTTGGTTTTCAGATTGTGGAGAAAGATGGAGGGGTTGATATATACAATAATACAAATAACAATAGTCCAATGCAGAATTCAAAGTCCAGCAAGTTGAGTAGTTTGTCATCTTCCTTCGCACGCAAACAATCCAAATCATCCTTCAGTGTGCCTAGTCCTAGAATGACAAGCAGAAACGACGCGTGGACTCCTTCGCATTCACATGAAGGTGGCAGTGCCATTCAAGGAATGGACGATTTGAATCTTGATGACCCAAATCCAGTTCATGATTCCTCTTCTTCTGTCCAGAAAGTTGATGACCACATAGAACAAGTGGAGGATTTTGATCTTCCGGATTTTGAGGTAGTTGATAAAGGGATTGAGGTTCAAGAGAAGGAAGAAGATGAAGGTGAGGAATCTGATAAAACCATAGAAGAGAAACCGGTTGCAGATGAGGTTGTGAAGGAAGTAGTGCACGATCATGTGCACCATGCTAGATTGTCTGAGCTTGATTCAATTGCTCAACAAATAAAAGCTCTTGAGTCTATGATGGGAGATGATGGAATTAATAATTCAATGAAAATAGAGGAAGAGACGGAATCATTGGATGCAGATGAAGAAACTGTGACTAGGGAGTTTCTTCAGATGCTTGAGGAGGATCAAGACAGCAAAGGATACTTATTCGACCAACCTGAAATTCCACCTTTACAACTTGAAGGGCATGCCGATTCTCCGGAAGATGGAGGAGAATCCGAAGTATATCTTTCTGACCTCGGTAAAGGCTTGGGTTGTGTGGTTCAAACAAGAGATGGCGGATACTTGGCTTCCATGAATCCTTTGGATGTTGTTGTGGCTAGAAAAGATACCCCAAAGCTAGCAATGCAGATGTCAAAGCCTTTTGTGTTGGCATCACATGAATCCGTAAGTGGGTTTGACTTGTTTCAGAAATTGGCTGGCATTGGTCTTGATGAACTCGGCTCTCAAATTTTATCCTCCTTGATGCCGATAGATGAACTGATGGGAAAACCTGCAGAGCAGATTGCTTTTGAAGGCATCGCGTCAGCCGTCGTACAAGGTAGGAACAAGGAAGGAGCAAGTTCCAGCGCTGCCCGCATAGTTTCTGCATTGAAAAGCATGTCAAACATTATCAGTTCAGGAAGGAGAGAACGAATATCAACAGGACTTTGGAATGTTGACGAAAATCCAGTTACTTCAGAGAAGCTTCTTGCTATATCAATGCAGAAGATTGAATCCATGGCAGTTGAGGCATTGAAAATTCAAGCTGAAGTGGCCGAAGAAGAAGCTCCATTCGATGTTTCTGCACTCAGCTCAAAGAAAGGGGAAAGTGGGAAAGATCTTTTGGCTTCTGCTATTCCACTTGAGGATTGGATTAGAGACCAAAGCTTAAGCTACAACAAAGGCACTGCAACTGCAAGTTCTAATGGTGAACCTGAAAGAGTCACGCTGATATTGGTTGTCCAACTGCGGGATCCAATGAGACGATATGAAGAAGTTGGAGGACCTACGATGGTGCTTATTCATGCAACACGTTCTGGCACAAAGGGGGCTAAGGAGGAGGAGAAGAGGTTCAAAGTAACAAGCATGCATGTGGGTGGTTTCAAAGTTAGGAGTTCCACAAATAAGAATGCATGGGACAATGAGAAGCAAAGACTAACTGCAATGCAATGGTTAGTTGCATATGGGTTGGGAAAAGCAGGGAAGAAAGGGAAGAAGACATTGACAAAGGGGCAAGACCTGCTATGGAGTATTTCGTCACGGATCGTGGCTGATATGTGGCTCAAAACCATGAGAAATCCCGATGTCAAGCTTGTAAAGTGA

Protein sequence

>Msa1372560

MADAKNNPNAQILEELEALSETLYKSHTSTTARRTASLVLPRTTPVPSIEDHNDNHATEVYSESSNKPRSRRMSLSPWRSRPKLEDGISKTETKEVVVNTSTTNLGENEKKGIWKWKPMRALSHIGMQKLSCLFSVEVVAAQDLPTSMNGLRLAVCVRKKETKDGAVKTMPSRVSQGAADFEETLFIKCHAYYTNNNHEKKFEPRPFSIYLFAVDAQELDFGRSYVDLSELIRESVEKSQQGARVRQWDTSFKLSGKAKGGELVVKLGFQIVEKDGGVDIYNNTNNNSPMQNSKSSKLSSLSSSFARKQSKSSFSVPSPRMTSRNDAWTPSHSHEGGSAIQGMDDLNLDDPNPVHDSSSSVQKVDDHIEQVEDFDLPDFEVVDKGIEVQEKEEDEGEESDKTIEEKPVADEVVKEVVHDHVHHARLSELDSIAQQIKALESMMGDDGINNSMKIEEETESLDADEETVTREFLQMLEEDQDSKGYLFDQPEIPPLQLEGHADSPEDGGESEVYLSDLGKGLGCVVQTRDGGYLASMNPLDVVVARKDTPKLAMQMSKPFVLASHESVSGFDLFQKLAGIGLDELGSQILSSLMPIDELMGKPAEQIAFEGIASAVVQGRNKEGASSSAARIVSALKSMSNIISSGRRERISTGLWNVDENPVTSEKLLAISMQKIESMAVEALKIQAEVAEEEAPFDVSALSSKKGESGKDLLASAIPLEDWIRDQSLSYNKGTATASSNGEPERVTLILVVQLRDPMRRYEEVGGPTMVLIHATRSGTKGAKEEEKRFKVTSMHVGGFKVRSSTNKNAWDNEKQRLTAMQWLVAYGLGKAGKKGKKTLTKGQDLLWSISSRIVADMWLKTMRNPDVKLVK*