AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1388850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1388850 MtrunA17_Chr1g0148361 96.552 261 9 0 1 261 1 261 0.0 528
Msa1388850 MtrunA17_Chr1g0171581 23.744 219 135 8 27 233 14 212 4.60e-17 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1388850 AT4G31115.1 56.410 195 77 2 45 237 53 241 7.37e-70 216
Msa1388850 AT4G31115.2 56.410 195 77 2 45 237 77 265 2.64e-69 215
Msa1388850 AT5G04440.1 28.061 196 121 5 43 233 60 240 1.62e-20 88.2
Msa1388850 AT5G04440.2 27.604 192 119 5 43 229 60 236 1.68e-18 82.4

Find 61 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAACCAGTGGGTGAAATTT+TGG 0.136941 tig0021196:-68481 None:intergenic
GGACCTTCAACGGCTGAAAT+AGG 0.309804 tig0021196:-70766 None:intergenic
AAATTTGTTTGCTGCCAAAA+AGG 0.320295 tig0021196:+68742 Msa1388850:CDS
ACACACTTGTTGTGACAGTT+AGG 0.327698 tig0021196:+68122 Msa1388850:five_prime_UTR
GTGGACATGGACAACACTTC+TGG 0.344987 tig0021196:+68444 Msa1388850:CDS
GATTTAGATGAGTTGAATCT+TGG 0.353136 tig0021196:-71304 None:intergenic
TAAATAACTCACATGTTTCC+AGG 0.371138 tig0021196:-70787 None:intergenic
GGTTGAAATGATTTCTTGTA+AGG 0.383448 tig0021196:+69660 Msa1388850:CDS
CTGAGCTTTGCAGCCTACTT+TGG 0.394426 tig0021196:+71268 Msa1388850:three_prime_UTR
CAGATTCATTCATTGATTGA+TGG 0.405628 tig0021196:+68221 Msa1388850:exon
CACACCATTTGTTACACAAA+AGG 0.406815 tig0021196:-68424 None:intergenic
ATTTCAGCCGTTGAAGGTCC+TGG 0.421555 tig0021196:+70769 Msa1388850:CDS
CTCAACAGATGAAGATTGCT+TGG 0.427861 tig0021196:+69639 Msa1388850:CDS
TGGTACAAGGTTATGATGAA+TGG 0.432437 tig0021196:+71052 Msa1388850:CDS
CACACTTGTTGTGACAGTTA+GGG 0.438660 tig0021196:+68123 Msa1388850:five_prime_UTR
AACTTCAAAAGTTTAAGTTT+CGG 0.449422 tig0021196:-69583 None:intergenic
CTCTTGATGCTAACACATAC+AGG 0.460337 tig0021196:+68897 Msa1388850:CDS
CCTTCCAAAATTTCACCCAC+TGG 0.462349 tig0021196:+68477 Msa1388850:CDS
AGATTCATTCATTGATTGAT+GGG 0.464869 tig0021196:+68222 Msa1388850:exon
CTACTTCAACAGATGGTACA+AGG 0.480356 tig0021196:+71039 Msa1388850:CDS
TAGTAAGAAAATGGACATCA+AGG 0.490517 tig0021196:+68679 Msa1388850:intron
GGTACAAGGTTATGATGAAT+GGG 0.494532 tig0021196:+71053 Msa1388850:CDS
CATGTTTCCAGGACCTTCAA+CGG 0.498643 tig0021196:-70776 None:intergenic
AACGGCTGAAATAGGCATTA+CGG 0.503607 tig0021196:-70758 None:intergenic
CAGAATGATGCAAGCTTTGG+TGG 0.509605 tig0021196:+70999 Msa1388850:intron
GAAATAGGCATTACGGTGAA+TGG 0.513014 tig0021196:-70751 None:intergenic
ATGCCTATTTCAGCCGTTGA+AGG 0.519281 tig0021196:+70763 Msa1388850:CDS
CTCATCTAAATCTTTATACA+TGG 0.521384 tig0021196:+71315 Msa1388850:three_prime_UTR
GTTTGAGGGTTCAGAAATTG+TGG 0.524442 tig0021196:+70181 Msa1388850:intron
GTGCAGAATGATGCAAGCTT+TGG 0.528382 tig0021196:+70996 Msa1388850:intron
ATGAATGAATCTGTGTGGTA+AGG 0.537000 tig0021196:-68211 None:intergenic
CTGCAGCAATTCCACTAGGC+TGG 0.547161 tig0021196:-68841 None:intergenic
CTAAATCAGTCTTCTAGTGA+AGG 0.548895 tig0021196:+71096 Msa1388850:CDS
TGATGATGTTCTTGGAGGAC+AGG 0.553433 tig0021196:+68793 Msa1388850:CDS
GGTGAAGGCGGTGACTTCCT+CGG 0.560745 tig0021196:+68700 Msa1388850:CDS
TTATACAGATACCTGAAAAG+TGG 0.561577 tig0021196:-70217 None:intergenic
TGAATGAATCTGTGTGGTAA+GGG 0.561764 tig0021196:-68210 None:intergenic
CAAGCAATCTTCATCTGTTG+AGG 0.563145 tig0021196:-69638 None:intergenic
ACCATCTGTTGAAGTAGAAG+TGG 0.580440 tig0021196:-71033 None:intergenic
TGTAACAAATGGTGTGGACA+TGG 0.582164 tig0021196:+68431 Msa1388850:CDS
GGCTTAGAAATTCACTGATG+TGG 0.588070 tig0021196:-68820 None:intergenic
ACACTTGTTGTGACAGTTAG+GGG 0.589395 tig0021196:+68124 Msa1388850:five_prime_UTR
AGTCTCAATGAGACCAAAGT+AGG 0.591440 tig0021196:-71281 None:intergenic
GATGATGATGATGTTCTTGG+AGG 0.598580 tig0021196:+68788 Msa1388850:CDS
TTATGGTAAATCACATGACA+TGG 0.600493 tig0021196:+70481 Msa1388850:CDS
TAACCACTCACTAGTATGCA+TGG 0.611267 tig0021196:-68050 None:intergenic
GAAAATGGACATCAAGGTGA+AGG 0.614833 tig0021196:+68685 Msa1388850:CDS
TTTCTTTGCATTTGAATCCG+AGG 0.616050 tig0021196:-68717 None:intergenic
TAGTAGAGACAACAGAGGGA+GGG 0.616278 tig0021196:+71127 Msa1388850:CDS
GCCACTTCTACTTCAACAGA+TGG 0.618609 tig0021196:+71032 Msa1388850:CDS
TTTGTAGTAGAGACAACAGA+GGG 0.633580 tig0021196:+71123 Msa1388850:CDS
GTAGTAGAGACAACAGAGGG+AGG 0.648680 tig0021196:+71126 Msa1388850:CDS
GAATTTCTAAGCCAGCCTAG+TGG 0.653471 tig0021196:+68830 Msa1388850:CDS
CACTTGTTGTGACAGTTAGG+GGG 0.655830 tig0021196:+68125 Msa1388850:five_prime_UTR
AATGGACATCAAGGTGAAGG+CGG 0.660410 tig0021196:+68688 Msa1388850:CDS
GTAACACGCAGATCTATGAA+AGG 0.668571 tig0021196:-69616 None:intergenic
TAACCATGCATACTAGTGAG+TGG 0.668965 tig0021196:+68047 Msa1388850:five_prime_UTR
AACACTGCAGCAATTCCACT+AGG 0.669903 tig0021196:-68845 None:intergenic
TGCTGCAGTGTTGAACACAA+AGG 0.698890 tig0021196:+68856 Msa1388850:CDS
GAAGTTGAATCTCACACTTG+AGG 0.720167 tig0021196:+70542 Msa1388850:CDS
AATCAATGAATGAATCTGTG+TGG 0.749340 tig0021196:-68216 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTATAATATAGAAAATG+TGG + tig0021196:70969-70988 Msa1388850:intron 10.0%
!!! CAATAAATTTATTTTTAGTT+TGG + tig0021196:71212-71231 Msa1388850:three_prime_UTR 10.0%
!!! TTTTATGTTCTTAAATAGTT+TGG + tig0021196:68375-68394 Msa1388850:intron 15.0%
!!! TATTCATTTTAGTAAGAAAA+TGG + tig0021196:68670-68689 Msa1388850:intron 15.0%
!! GCTTAAATTATTCTTTAAAT+GGG + tig0021196:68949-68968 Msa1388850:intron 15.0%
!! TGATTAAGATTTATTACATA+GGG - tig0021196:69802-69821 None:intergenic 15.0%
!! ATGATTAAGATTTATTACAT+AGG - tig0021196:69803-69822 None:intergenic 15.0%
!!! TAAATAAATATGCATGTTTT+AGG - tig0021196:70037-70056 None:intergenic 15.0%
!!! AATTTATTTTTAGTTTGGTA+AGG + tig0021196:71217-71236 Msa1388850:three_prime_UTR 15.0%
!!! TTTTGTTTTTTTACTGTCAA+AGG + tig0021196:68091-68110 Msa1388850:five_prime_UTR 20.0%
!! AAGTGGAAAAAAAAAAACAT+TGG - tig0021196:68259-68278 None:intergenic 20.0%
!! GGCTTAAATTATTCTTTAAA+TGG + tig0021196:68948-68967 Msa1388850:intron 20.0%
!! AAATTATTCTTTAAATGGGT+TGG + tig0021196:68953-68972 Msa1388850:intron 20.0%
!! GAAATACTATTCCTTATATT+TGG + tig0021196:69146-69165 Msa1388850:intron 20.0%
!! TGTAGCAAAAGATAAAATAA+AGG + tig0021196:69248-69267 Msa1388850:intron 20.0%
!!! TTTAGACAATTGATTCTATA+GGG - tig0021196:69415-69434 None:intergenic 20.0%
!!! AATCAATTGTCTAAAGTTTT+TGG + tig0021196:69420-69439 Msa1388850:intron 20.0%
!! TAATTACTTATTGTATGTGT+AGG + tig0021196:69551-69570 Msa1388850:intron 20.0%
!!! AACTTCAAAAGTTTAAGTTT+CGG - tig0021196:69586-69605 None:intergenic 20.0%
!!! AGCTTGTTTTTTTATTCTTT+TGG + tig0021196:69705-69724 Msa1388850:intron 20.0%
!! AACAATTCTTCAAATCAAAA+TGG - tig0021196:69957-69976 None:intergenic 20.0%
!!! GAAGTATTCAAAAATGAAAT+AGG - tig0021196:70143-70162 None:intergenic 20.0%
!!! ATATATTTTTTTGCAGTTTG+AGG + tig0021196:70166-70185 Msa1388850:intron 20.0%
!!! TATATTTTTTTGCAGTTTGA+GGG + tig0021196:70167-70186 Msa1388850:intron 20.0%
!! TAGAATCATATAATATCACA+AGG - tig0021196:70925-70944 None:intergenic 20.0%
!!! TCTTTTTCATAAACATCAAA+AGG - tig0021196:71157-71176 None:intergenic 20.0%
!! AGATTCATTCATTGATTGAT+GGG + tig0021196:68222-68241 Msa1388850:exon 25.0%
!!! TGCTTTCATTTTTTACCTAT+TGG + tig0021196:68577-68596 Msa1388850:intron 25.0%
!!! TTTTTTACCTATTGGATTGT+AGG + tig0021196:68585-68604 Msa1388850:intron 25.0%
!! ACATATCTTCAATTCTTTTC+TGG + tig0021196:68924-68943 Msa1388850:intron 25.0%
! CTGACTATAGAAATAGAATT+AGG - tig0021196:69067-69086 None:intergenic 25.0%
! AGTTTCACCATATACAAAAT+AGG + tig0021196:69120-69139 Msa1388850:intron 25.0%
!! TTTCCAACCTATTTTGTATA+TGG - tig0021196:69130-69149 None:intergenic 25.0%
!! CTTTAGACAATTGATTCTAT+AGG - tig0021196:69416-69435 None:intergenic 25.0%
! TTAATCATCATTCGTGAAAA+TGG + tig0021196:69815-69834 Msa1388850:intron 25.0%
! TTTATTTAACTAATGCCCTA+CGG + tig0021196:70049-70068 Msa1388850:intron 25.0%
! ATGCTTATTAATCCTTTCTA+TGG + tig0021196:70446-70465 Msa1388850:intron 25.0%
! AATTGAAATAGCAAGGATTA+AGG - tig0021196:70634-70653 None:intergenic 25.0%
! GATAAGAAATTGAAATAGCA+AGG - tig0021196:70641-70660 None:intergenic 25.0%
! CTCATCTAAATCTTTATACA+TGG + tig0021196:71315-71334 Msa1388850:three_prime_UTR 25.0%
AATCAATGAATGAATCTGTG+TGG - tig0021196:68219-68238 None:intergenic 30.0%
! CAGATTCATTCATTGATTGA+TGG + tig0021196:68221-68240 Msa1388850:exon 30.0%
ACGGTGTAATCTTGAAATTA+TGG - tig0021196:68338-68357 None:intergenic 30.0%
! CAATCCTTTTGTGTAACAAA+TGG + tig0021196:68420-68439 Msa1388850:CDS 30.0%
AGTTAAGTAAACAAACCAGT+GGG - tig0021196:68495-68514 None:intergenic 30.0%
AAGTTAAGTAAACAAACCAG+TGG - tig0021196:68496-68515 None:intergenic 30.0%
TAGTAAGAAAATGGACATCA+AGG + tig0021196:68679-68698 Msa1388850:intron 30.0%
! AAATTTGTTTGCTGCCAAAA+AGG + tig0021196:68742-68761 Msa1388850:CDS 30.0%
! TAGTTTAACTCTGTCCTTTT+TGG - tig0021196:68759-68778 None:intergenic 30.0%
ACATCATCATCATCATATGT+TGG - tig0021196:68782-68801 None:intergenic 30.0%
! TATGATGATGATGATGTTCT+TGG + tig0021196:68785-68804 Msa1388850:CDS 30.0%
! TATCTTCAATTCTTTTCTGG+TGG + tig0021196:68927-68946 Msa1388850:intron 30.0%
!! ATTCTTTAAATGGGTTGGTT+TGG + tig0021196:68958-68977 Msa1388850:intron 30.0%
TCACCATATACAAAATAGGT+TGG + tig0021196:69124-69143 Msa1388850:intron 30.0%
AGTCACACATTCCAAATATA+AGG - tig0021196:69160-69179 None:intergenic 30.0%
! ATATTTGGAATGTGTGACTA+TGG + tig0021196:69161-69180 Msa1388850:intron 30.0%
TTTAGATGCTTACTCATACA+GGG - tig0021196:69187-69206 None:intergenic 30.0%
ATTTAGATGCTTACTCATAC+AGG - tig0021196:69188-69207 None:intergenic 30.0%
GCTTATATAAGCTTATCTAC+TGG - tig0021196:69379-69398 None:intergenic 30.0%
GGTTGAAATGATTTCTTGTA+AGG + tig0021196:69660-69679 Msa1388850:CDS 30.0%
AAGCTGTAAAATCCTGTAAA+GGG - tig0021196:69690-69709 None:intergenic 30.0%
AAAAGACAGACTTTGTAATC+AGG - tig0021196:69879-69898 None:intergenic 30.0%
TTATACAGATACCTGAAAAG+TGG - tig0021196:70220-70239 None:intergenic 30.0%
TTTATAACCATGTTATCCGT+CGG + tig0021196:70245-70264 Msa1388850:intron 30.0%
! TATGGATTTTGCAGCATTTA+TGG + tig0021196:70464-70483 Msa1388850:intron 30.0%
TTATGGTAAATCACATGACA+TGG + tig0021196:70481-70500 Msa1388850:CDS 30.0%
! TGCTGATACTGAATCATTTT+TGG + tig0021196:70509-70528 Msa1388850:CDS 30.0%
TAAATAACTCACATGTTTCC+AGG - tig0021196:70790-70809 None:intergenic 30.0%
GAACAGAATGATAACTCTTA+TGG + tig0021196:70848-70867 Msa1388850:intron 30.0%
! GATTTAGATGAGTTGAATCT+TGG - tig0021196:71307-71326 None:intergenic 30.0%
TGAATGAATCTGTGTGGTAA+GGG - tig0021196:68213-68232 None:intergenic 35.0%
ATGAATGAATCTGTGTGGTA+AGG - tig0021196:68214-68233 None:intergenic 35.0%
TAATTTGATTGCAGAGCTAG+TGG - tig0021196:68290-68309 None:intergenic 35.0%
TTTCAAGATTACACCGTTAC+TGG + tig0021196:68341-68360 Msa1388850:intron 35.0%
! CACACCATTTGTTACACAAA+AGG - tig0021196:68427-68446 None:intergenic 35.0%
! CTTTTGTGTAACAAATGGTG+TGG + tig0021196:68425-68444 Msa1388850:CDS 35.0%
!! GAAATTTTGGAAGGAATGTG+TGG - tig0021196:68471-68490 None:intergenic 35.0%
TTCAGATAGAGCAGAAACAA+AGG - tig0021196:68534-68553 None:intergenic 35.0%
! TTTGAGACCTACAATCCAAT+AGG - tig0021196:68595-68614 None:intergenic 35.0%
TTTCTTTGCATTTGAATCCG+AGG - tig0021196:68720-68739 None:intergenic 35.0%
! TTGATTCTATAGGGCTTGTT+TGG - tig0021196:69406-69425 None:intergenic 35.0%
CAAGCTGTAAAATCCTGTAA+AGG - tig0021196:69691-69710 None:intergenic 35.0%
TTGTAATCAGGTGACTTCAT+GGG - tig0021196:69867-69886 None:intergenic 35.0%
TTTGTAATCAGGTGACTTCA+TGG - tig0021196:69868-69887 None:intergenic 35.0%
ATCACGTTTATCAAACCGTA+GGG - tig0021196:70067-70086 None:intergenic 35.0%
TATCACGTTTATCAAACCGT+AGG - tig0021196:70068-70087 None:intergenic 35.0%
! AGATTAGTTAAAGGCAAAGC+TGG - tig0021196:70282-70301 None:intergenic 35.0%
TGCCTTTAACTAATCTCCAT+TGG + tig0021196:70286-70305 Msa1388850:intron 35.0%
! CTCCAATGGAGATTAGTTAA+AGG - tig0021196:70291-70310 None:intergenic 35.0%
TCGAAAAAATGTGGTTGAGA+TGG - tig0021196:70352-70371 None:intergenic 35.0%
ATCCCATAGGTTGTGTTTAT+GGG + tig0021196:70387-70406 Msa1388850:intron 35.0%
ATCCCATAAACACAACCTAT+GGG - tig0021196:70392-70411 None:intergenic 35.0%
TATCCCATAAACACAACCTA+TGG - tig0021196:70393-70412 None:intergenic 35.0%
! ATAAGCATTGTTGTGACACA+GGG - tig0021196:70434-70453 None:intergenic 35.0%
! AATAAGCATTGTTGTGACAC+AGG - tig0021196:70435-70454 None:intergenic 35.0%
ATGCTGCAAAATCCATAGAA+AGG - tig0021196:70461-70480 None:intergenic 35.0%
TGAAATAGCAAGGATTAAGG+AGG - tig0021196:70631-70650 None:intergenic 35.0%
TGGTACAAGGTTATGATGAA+TGG + tig0021196:71052-71071 Msa1388850:CDS 35.0%
GGTACAAGGTTATGATGAAT+GGG + tig0021196:71053-71072 Msa1388850:CDS 35.0%
CTAAATCAGTCTTCTAGTGA+AGG + tig0021196:71096-71115 Msa1388850:CDS 35.0%
! TTTTGTAGTAGAGACAACAG+AGG + tig0021196:71122-71141 Msa1388850:CDS 35.0%
TTTGTAGTAGAGACAACAGA+GGG + tig0021196:71123-71142 Msa1388850:CDS 35.0%
TAACCATGCATACTAGTGAG+TGG + tig0021196:68047-68066 Msa1388850:five_prime_UTR 40.0%
TAACCACTCACTAGTATGCA+TGG - tig0021196:68053-68072 None:intergenic 40.0%
!! ACACACTTGTTGTGACAGTT+AGG + tig0021196:68122-68141 Msa1388850:five_prime_UTR 40.0%
!! CACACTTGTTGTGACAGTTA+GGG + tig0021196:68123-68142 Msa1388850:five_prime_UTR 40.0%
!! ACACTTGTTGTGACAGTTAG+GGG + tig0021196:68124-68143 Msa1388850:five_prime_UTR 40.0%
AGCTAGTGGAAAAGTGAAAG+TGG - tig0021196:68276-68295 None:intergenic 40.0%
AAGATTACACCGTTACTGGT+TGG + tig0021196:68345-68364 Msa1388850:intron 40.0%
AAATCAGCACCAACCAGTAA+CGG - tig0021196:68357-68376 None:intergenic 40.0%
TGTAACAAATGGTGTGGACA+TGG + tig0021196:68431-68450 Msa1388850:CDS 40.0%
! CAAACCAGTGGGTGAAATTT+TGG - tig0021196:68484-68503 None:intergenic 40.0%
GAAAATGGACATCAAGGTGA+AGG + tig0021196:68685-68704 Msa1388850:CDS 40.0%
! GATGATGATGATGTTCTTGG+AGG + tig0021196:68788-68807 Msa1388850:CDS 40.0%
GGCTTAGAAATTCACTGATG+TGG - tig0021196:68823-68842 None:intergenic 40.0%
CTCTTGATGCTAACACATAC+AGG + tig0021196:68897-68916 Msa1388850:CDS 40.0%
! TCTATAGGGCTTGTTTGGAT+TGG - tig0021196:69401-69420 None:intergenic 40.0%
GTAACACGCAGATCTATGAA+AGG - tig0021196:69619-69638 None:intergenic 40.0%
CAAGCAATCTTCATCTGTTG+AGG - tig0021196:69641-69660 None:intergenic 40.0%
CTCAACAGATGAAGATTGCT+TGG + tig0021196:69639-69658 Msa1388850:CDS 40.0%
! TTGTAAGGTGTTCCCTTTAC+AGG + tig0021196:69675-69694 Msa1388850:intron 40.0%
!! TTCTTTTGGAGAGCAACAGA+TGG + tig0021196:69719-69738 Msa1388850:intron 40.0%
GTTTGAGGGTTCAGAAATTG+TGG + tig0021196:70181-70200 Msa1388850:intron 40.0%
TTAGTTAAAGGCAAAGCTGG+TGG - tig0021196:70279-70298 None:intergenic 40.0%
CACTCAATCAGATTCTCCAA+TGG - tig0021196:70305-70324 None:intergenic 40.0%
CCATGGACTTCGAAAAAATG+TGG - tig0021196:70361-70380 None:intergenic 40.0%
!!! CCACATTTTTTCGAAGTCCA+TGG + tig0021196:70358-70377 Msa1388850:intron 40.0%
GATCCCATAGGTTGTGTTTA+TGG + tig0021196:70386-70405 Msa1388850:intron 40.0%
TTGTTGTGACACAGGGAAAA+CGG - tig0021196:70427-70446 None:intergenic 40.0%
GAAGTTGAATCTCACACTTG+AGG + tig0021196:70542-70561 Msa1388850:CDS 40.0%
GAAATAGGCATTACGGTGAA+TGG - tig0021196:70754-70773 None:intergenic 40.0%
AACGGCTGAAATAGGCATTA+CGG - tig0021196:70761-70780 None:intergenic 40.0%
ACCATCTGTTGAAGTAGAAG+TGG - tig0021196:71036-71055 None:intergenic 40.0%
CTACTTCAACAGATGGTACA+AGG + tig0021196:71039-71058 Msa1388850:CDS 40.0%
AGTCTCAATGAGACCAAAGT+AGG - tig0021196:71284-71303 None:intergenic 40.0%
!! CACTTGTTGTGACAGTTAGG+GGG + tig0021196:68125-68144 Msa1388850:five_prime_UTR 45.0%
! CCAGTGGGTGAAATTTTGGA+AGG - tig0021196:68480-68499 None:intergenic 45.0%
CCTTCCAAAATTTCACCCAC+TGG + tig0021196:68477-68496 Msa1388850:CDS 45.0%
AATGGACATCAAGGTGAAGG+CGG + tig0021196:68688-68707 Msa1388850:CDS 45.0%
! TGATGATGTTCTTGGAGGAC+AGG + tig0021196:68793-68812 Msa1388850:CDS 45.0%
GAATTTCTAAGCCAGCCTAG+TGG + tig0021196:68830-68849 Msa1388850:CDS 45.0%
AACACTGCAGCAATTCCACT+AGG - tig0021196:68848-68867 None:intergenic 45.0%
! TGCTGCAGTGTTGAACACAA+AGG + tig0021196:68856-68875 Msa1388850:CDS 45.0%
TTGGAGAGCAACAGATGGAA+TGG + tig0021196:69724-69743 Msa1388850:intron 45.0%
!! GAGCTAAACGACCACTTTTC+AGG + tig0021196:70206-70225 Msa1388850:CDS 45.0%
GGAGAATCTGATTGAGTGAC+TGG + tig0021196:70307-70326 Msa1388850:intron 45.0%
TGTTGTGACACAGGGAAAAC+GGG - tig0021196:70426-70445 None:intergenic 45.0%
ATGCCTATTTCAGCCGTTGA+AGG + tig0021196:70763-70782 Msa1388850:CDS 45.0%
CATGTTTCCAGGACCTTCAA+CGG - tig0021196:70779-70798 None:intergenic 45.0%
GTGCAGAATGATGCAAGCTT+TGG + tig0021196:70996-71015 Msa1388850:intron 45.0%
! CAGAATGATGCAAGCTTTGG+TGG + tig0021196:70999-71018 Msa1388850:intron 45.0%
GCCACTTCTACTTCAACAGA+TGG + tig0021196:71032-71051 Msa1388850:CDS 45.0%
TAGTAGAGACAACAGAGGGA+GGG + tig0021196:71127-71146 Msa1388850:CDS 45.0%
GTGGACATGGACAACACTTC+TGG + tig0021196:68444-68463 Msa1388850:CDS 50.0%
ACACGCACGATGAGATGCAT+TGG + tig0021196:69760-69779 Msa1388850:intron 50.0%
CTTCACACCGACGGATAACA+TGG - tig0021196:70255-70274 None:intergenic 50.0%
! AGTGACTGGCCACCTTTAGT+GGG + tig0021196:70321-70340 Msa1388850:intron 50.0%
ATGGAAGACCCCACTAAAGG+TGG - tig0021196:70333-70352 None:intergenic 50.0%
GAGATGGAAGACCCCACTAA+AGG - tig0021196:70336-70355 None:intergenic 50.0%
TCCATGGCACATGATCCCAT+AGG + tig0021196:70374-70393 Msa1388850:intron 50.0%
ACCTATGGGATCATGTGCCA+TGG - tig0021196:70378-70397 None:intergenic 50.0%
GGACCTTCAACGGCTGAAAT+AGG - tig0021196:70769-70788 None:intergenic 50.0%
ATTTCAGCCGTTGAAGGTCC+TGG + tig0021196:70769-70788 Msa1388850:CDS 50.0%
GTAGTAGAGACAACAGAGGG+AGG + tig0021196:71126-71145 Msa1388850:CDS 50.0%
CTGAGCTTTGCAGCCTACTT+TGG + tig0021196:71268-71287 Msa1388850:three_prime_UTR 50.0%
CTGCAGCAATTCCACTAGGC+TGG - tig0021196:68844-68863 None:intergenic 55.0%
! GAGTGACTGGCCACCTTTAG+TGG + tig0021196:70320-70339 Msa1388850:intron 55.0%
! GTGACTGGCCACCTTTAGTG+GGG + tig0021196:70322-70341 Msa1388850:intron 55.0%
GGGGGAGTTGTGAGTGACAG+TGG + tig0021196:68143-68162 Msa1388850:five_prime_UTR 60.0%
GGTGAAGGCGGTGACTTCCT+CGG + tig0021196:68700-68719 Msa1388850:CDS 60.0%
!! GCTGGTGGACTTCACACCGA+CGG - tig0021196:70264-70283 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0021196 gene 68042 71372 68042 ID=Msa1388850;Name=Msa1388850
tig0021196 mRNA 68042 71372 68042 ID=Msa1388850-mRNA-1;Parent=Msa1388850;Name=Msa1388850-mRNA-1;_AED=0.29;_eAED=0.29;_QI=198|1|1|1|0.71|1|8|211|261
tig0021196 exon 68042 68243 68042 ID=Msa1388850-mRNA-1:exon:11348;Parent=Msa1388850-mRNA-1
tig0021196 exon 68414 68498 68414 ID=Msa1388850-mRNA-1:exon:11349;Parent=Msa1388850-mRNA-1
tig0021196 exon 68682 68918 68682 ID=Msa1388850-mRNA-1:exon:11350;Parent=Msa1388850-mRNA-1
tig0021196 exon 69573 69681 69573 ID=Msa1388850-mRNA-1:exon:11351;Parent=Msa1388850-mRNA-1
tig0021196 exon 70182 70227 70182 ID=Msa1388850-mRNA-1:exon:11352;Parent=Msa1388850-mRNA-1
tig0021196 exon 70478 70563 70478 ID=Msa1388850-mRNA-1:exon:11353;Parent=Msa1388850-mRNA-1
tig0021196 exon 70739 70797 70739 ID=Msa1388850-mRNA-1:exon:11354;Parent=Msa1388850-mRNA-1
tig0021196 exon 71002 71372 71002 ID=Msa1388850-mRNA-1:exon:11355;Parent=Msa1388850-mRNA-1
tig0021196 five_prime_UTR 68042 68239 68042 ID=Msa1388850-mRNA-1:five_prime_utr;Parent=Msa1388850-mRNA-1
tig0021196 CDS 68240 68243 68240 ID=Msa1388850-mRNA-1:cds;Parent=Msa1388850-mRNA-1
tig0021196 CDS 68414 68498 68414 ID=Msa1388850-mRNA-1:cds;Parent=Msa1388850-mRNA-1
tig0021196 CDS 68682 68918 68682 ID=Msa1388850-mRNA-1:cds;Parent=Msa1388850-mRNA-1
tig0021196 CDS 69573 69681 69573 ID=Msa1388850-mRNA-1:cds;Parent=Msa1388850-mRNA-1
tig0021196 CDS 70182 70227 70182 ID=Msa1388850-mRNA-1:cds;Parent=Msa1388850-mRNA-1
tig0021196 CDS 70478 70563 70478 ID=Msa1388850-mRNA-1:cds;Parent=Msa1388850-mRNA-1
tig0021196 CDS 70739 70797 70739 ID=Msa1388850-mRNA-1:cds;Parent=Msa1388850-mRNA-1
tig0021196 CDS 71002 71161 71002 ID=Msa1388850-mRNA-1:cds;Parent=Msa1388850-mRNA-1
tig0021196 three_prime_UTR 71162 71372 71162 ID=Msa1388850-mRNA-1:three_prime_utr;Parent=Msa1388850-mRNA-1
Gene Sequence

>Msa1388850

ATGGCAAAAGCAATCCTTTTGTGTAACAAATGGTGTGGACATGGACAACACTTCTGGACCACACATTCCTTCCAAAATTTCACCCACTGTAAGAAAATGGACATCAAGGTGAAGGCGGTGACTTCCTCGGATTCAAATGCAAAGAAAGCAAATTTGTTTGCTGCCAAAAAGGACAGAGTTAAACTACCAACATATGATGATGATGATGTTCTTGGAGGACAGGAATACCACATCAGTGAATTTCTAAGCCAGCCTAGTGGAATTGCTGCAGTGTTGAACACAAAGGTCTTACAATCATTTCAATCTCTTGATGCTAACACATACAGGTGTGAACTACCGAAACTTAAACTTTTGAAGTTTGAAGTTACTCCTTTCATAGATCTGCGTGTTACCTCAACAGATGAAGATTGCTTGGTTGAAATGATTTCTTGTAAGTTTGAGGGTTCAGAAATTGTGGAAGAGCTAAACGACCACTTTTCAGCATTTATGGTAAATCACATGACATGGAGTGATGCTGATACTGAATCATTTTTGGAAGTTGATGTGAAGTTGAATCTCACACTTGAGATCTACACGCGACCATTCACCGTAATGCCTATTTCAGCCGTTGAAGGTCCTGGAAACATAATGATGCAAGCTTTGGTGGACAAGCTCGTGCCACTTCTACTTCAACAGATGGTACAAGGTTATGATGAATGGGTTCAAAAGCAATTGTATTATCTAAATCAGTCTTCTAGTGAAGGAAATTTTGTAGTAGAGACAACAGAGGGAGGGAGAACCTTTTGA

Protein sequence

>Msa1388850

MAKAILLCNKWCGHGQHFWTTHSFQNFTHCKKMDIKVKAVTSSDSNAKKANLFAAKKDRVKLPTYDDDDVLGGQEYHISEFLSQPSGIAAVLNTKVLQSFQSLDANTYRCELPKLKLLKFEVTPFIDLRVTSTDEDCLVEMISCKFEGSEIVEELNDHFSAFMVNHMTWSDADTESFLEVDVKLNLTLEIYTRPFTVMPISAVEGPGNIMMQALVDKLVPLLLQQMVQGYDEWVQKQLYYLNQSSSEGNFVVETTEGGRTF*