AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0056040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0056040 MtrunA17_Chr1g0148361 91.775 231 13 1 28 252 31 261 1.17e-154 430
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0056040 AT4G31115.1 53.333 195 77 4 42 228 53 241 3.48e-60 191
Msa0056040 AT4G31115.2 53.333 195 77 4 42 228 77 265 1.27e-59 190
Msa0056040 AT5G04440.1 24.615 195 125 5 40 225 60 241 4.96e-13 67.4
Msa0056040 AT5G04440.2 24.211 190 122 5 40 220 60 236 9.11e-11 60.8

Find 68 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAACCAGTGGGTGAAATTT+TGG 0.136941 1_2:+11514863 None:intergenic
TTGTAAGGTGTTCCCTTTAC+AGG 0.189342 1_2:-11513669 Msa0056040:CDS
TTTCAAGATTACACCGTTAC+TGG 0.287201 1_2:-11515003 Msa0056040:five_prime_UTR
GGACCTTCAACGGCTGAAAT+AGG 0.309804 1_2:+11512578 None:intergenic
AAATTTGTTTGCTGCCAAAA+AGG 0.320295 1_2:-11514602 Msa0056040:CDS
ACACACTTGTTGTGACAGTT+AGG 0.327698 1_2:-11515222 Msa0056040:five_prime_UTR
GTGGACATGGACAACACTTC+TGG 0.344987 1_2:-11514900 Msa0056040:exon
GATTTAGATGAGTTGAATCT+TGG 0.353136 1_2:+11512040 None:intergenic
ACGGTGTAATCTTGAAATTA+TGG 0.369942 1_2:+11515009 None:intergenic
TAAATAACTCACATGTTTCC+AGG 0.371138 1_2:+11512557 None:intergenic
GGTTGAAATGATTTCTTGTA+AGG 0.383448 1_2:-11513684 Msa0056040:CDS
CTGAGCTTTGCAGCCTACTT+TGG 0.394426 1_2:-11512076 Msa0056040:three_prime_UTR
CAGATTCATTCATTGATTGA+TGG 0.405628 1_2:-11515123 Msa0056040:five_prime_UTR
CACACCATTTGTTACACAAA+AGG 0.406815 1_2:+11514920 None:intergenic
ATTTCAGCCGTTGAAGGTCC+TGG 0.421555 1_2:-11512575 Msa0056040:CDS
CTCAACAGATGAAGATTGCT+TGG 0.427861 1_2:-11513705 Msa0056040:CDS
TGGTACAAGGTTATGATGAA+TGG 0.432437 1_2:-11512292 Msa0056040:CDS
CACACTTGTTGTGACAGTTA+GGG 0.438660 1_2:-11515221 Msa0056040:five_prime_UTR
AACTTCAAAAGTTTAAGTTT+CGG 0.449422 1_2:+11513761 None:intergenic
AAGCTGTAAAATCCTGTAAA+GGG 0.452423 1_2:+11513657 None:intergenic
CTCTTGATGCTAACACATAC+AGG 0.460337 1_2:-11514447 Msa0056040:intron
CCTTCCAAAATTTCACCCAC+TGG 0.462349 1_2:-11514867 Msa0056040:intron
AGATTCATTCATTGATTGAT+GGG 0.464869 1_2:-11515122 Msa0056040:five_prime_UTR
CAAGCTGTAAAATCCTGTAA+AGG 0.471065 1_2:+11513656 None:intergenic
CTACTTCAACAGATGGTACA+AGG 0.480356 1_2:-11512305 Msa0056040:CDS
TAGTAAGAAAATGGACATCA+AGG 0.490517 1_2:-11514665 Msa0056040:CDS
GGTACAAGGTTATGATGAAT+GGG 0.494532 1_2:-11512291 Msa0056040:CDS
CATGTTTCCAGGACCTTCAA+CGG 0.498643 1_2:+11512568 None:intergenic
AACGGCTGAAATAGGCATTA+CGG 0.503607 1_2:+11512586 None:intergenic
CAGAATGATGCAAGCTTTGG+TGG 0.509605 1_2:-11512345 Msa0056040:CDS
GAAATAGGCATTACGGTGAA+TGG 0.513014 1_2:+11512593 None:intergenic
ATGCCTATTTCAGCCGTTGA+AGG 0.519281 1_2:-11512581 Msa0056040:CDS
CTCATCTAAATCTTTATACA+TGG 0.521384 1_2:-11512029 Msa0056040:three_prime_UTR
GTGCAGAATGATGCAAGCTT+TGG 0.528382 1_2:-11512348 Msa0056040:intron
ATGAATGAATCTGTGTGGTA+AGG 0.537000 1_2:+11515133 None:intergenic
TAATTTGATTGCAGAGCTAG+TGG 0.542594 1_2:+11515057 None:intergenic
CTGCAGCAATTCCACTAGGC+TGG 0.547161 1_2:+11514503 None:intergenic
CTAAATCAGTCTTCTAGTGA+AGG 0.548895 1_2:-11512248 Msa0056040:CDS
TGATGATGTTCTTGGAGGAC+AGG 0.553433 1_2:-11514551 Msa0056040:CDS
GGTGAAGGCGGTGACTTCCT+CGG 0.560745 1_2:-11514644 Msa0056040:CDS
TGAATGAATCTGTGTGGTAA+GGG 0.561764 1_2:+11515134 None:intergenic
CAAGCAATCTTCATCTGTTG+AGG 0.563145 1_2:+11513706 None:intergenic
AGCTAGTGGAAAAGTGAAAG+TGG 0.566231 1_2:+11515071 None:intergenic
ACCATCTGTTGAAGTAGAAG+TGG 0.580440 1_2:+11512311 None:intergenic
TGTAACAAATGGTGTGGACA+TGG 0.582164 1_2:-11514913 Msa0056040:exon
GGCTTAGAAATTCACTGATG+TGG 0.588070 1_2:+11514524 None:intergenic
ACACTTGTTGTGACAGTTAG+GGG 0.589395 1_2:-11515220 Msa0056040:five_prime_UTR
AGTCTCAATGAGACCAAAGT+AGG 0.591440 1_2:+11512063 None:intergenic
GATGATGATGATGTTCTTGG+AGG 0.598580 1_2:-11514556 Msa0056040:CDS
TTATGGTAAATCACATGACA+TGG 0.600493 1_2:-11512863 Msa0056040:CDS
AAATCAGCACCAACCAGTAA+CGG 0.605136 1_2:+11514990 None:intergenic
TAACCACTCACTAGTATGCA+TGG 0.611267 1_2:+11515294 None:intergenic
GAAAATGGACATCAAGGTGA+AGG 0.614833 1_2:-11514659 Msa0056040:CDS
TTTCTTTGCATTTGAATCCG+AGG 0.616050 1_2:+11514627 None:intergenic
AAGATTACACCGTTACTGGT+TGG 0.616158 1_2:-11514999 Msa0056040:five_prime_UTR
TAGTAGAGACAACAGAGGGA+GGG 0.616278 1_2:-11512217 Msa0056040:CDS
GCCACTTCTACTTCAACAGA+TGG 0.618609 1_2:-11512312 Msa0056040:CDS
TTTGTAGTAGAGACAACAGA+GGG 0.633580 1_2:-11512221 Msa0056040:CDS
GTAGTAGAGACAACAGAGGG+AGG 0.648680 1_2:-11512218 Msa0056040:CDS
GAATTTCTAAGCCAGCCTAG+TGG 0.653471 1_2:-11514514 Msa0056040:CDS
CACTTGTTGTGACAGTTAGG+GGG 0.655830 1_2:-11515219 Msa0056040:five_prime_UTR
AATGGACATCAAGGTGAAGG+CGG 0.660410 1_2:-11514656 Msa0056040:CDS
GTAACACGCAGATCTATGAA+AGG 0.668571 1_2:+11513728 None:intergenic
TAACCATGCATACTAGTGAG+TGG 0.668965 1_2:-11515297 Msa0056040:five_prime_UTR
AACACTGCAGCAATTCCACT+AGG 0.669903 1_2:+11514499 None:intergenic
TGCTGCAGTGTTGAACACAA+AGG 0.698890 1_2:-11514488 Msa0056040:CDS
GAAGTTGAATCTCACACTTG+AGG 0.720167 1_2:-11512802 Msa0056040:intron
AATCAATGAATGAATCTGTG+TGG 0.749340 1_2:+11515128 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTATAATATAGAAAATG+TGG - chr1_2:11514921-11514940 Msa0056040:five_prime_UTR 10.0%
!!! CAATAAATTTATTTTTAGTT+TGG - chr1_2:11515164-11515183 Msa0056040:five_prime_UTR 10.0%
!!! TTTTATGTTCTTAAATAGTT+TGG - chr1_2:11512327-11512346 Msa0056040:CDS 15.0%
!!! TATTCATTTTAGTAAGAAAA+TGG - chr1_2:11512622-11512641 Msa0056040:intron 15.0%
!! GCTTAAATTATTCTTTAAAT+GGG - chr1_2:11512901-11512920 Msa0056040:intron 15.0%
!! TGATTAAGATTTATTACATA+GGG + chr1_2:11513754-11513773 None:intergenic 15.0%
!! ATGATTAAGATTTATTACAT+AGG + chr1_2:11513755-11513774 None:intergenic 15.0%
!!! TAAATAAATATGCATGTTTT+AGG + chr1_2:11513989-11514008 None:intergenic 15.0%
!!! AATTTATTTTTAGTTTGGTA+AGG - chr1_2:11515169-11515188 Msa0056040:five_prime_UTR 15.0%
!!! TTTTGTTTTTTTACTGTCAA+AGG - chr1_2:11512043-11512062 Msa0056040:three_prime_UTR 20.0%
!! AAGTGGAAAAAAAAAAACAT+TGG + chr1_2:11512211-11512230 None:intergenic 20.0%
!! GGCTTAAATTATTCTTTAAA+TGG - chr1_2:11512900-11512919 Msa0056040:intron 20.0%
!! AAATTATTCTTTAAATGGGT+TGG - chr1_2:11512905-11512924 Msa0056040:intron 20.0%
!! GAAATACTATTCCTTATATT+TGG - chr1_2:11513098-11513117 Msa0056040:intron 20.0%
!! TGTAGCAAAAGATAAAATAA+AGG - chr1_2:11513200-11513219 Msa0056040:intron 20.0%
!!! TTTAGACAATTGATTCTATA+GGG + chr1_2:11513367-11513386 None:intergenic 20.0%
!!! AATCAATTGTCTAAAGTTTT+TGG - chr1_2:11513372-11513391 Msa0056040:intron 20.0%
!! TAATTACTTATTGTATGTGT+AGG - chr1_2:11513503-11513522 Msa0056040:intron 20.0%
!!! AACTTCAAAAGTTTAAGTTT+CGG + chr1_2:11513538-11513557 None:intergenic 20.0%
!!! AGCTTGTTTTTTTATTCTTT+TGG - chr1_2:11513657-11513676 Msa0056040:CDS 20.0%
!! AACAATTCTTCAAATCAAAA+TGG + chr1_2:11513909-11513928 None:intergenic 20.0%
!!! GAAGTATTCAAAAATGAAAT+AGG + chr1_2:11514095-11514114 None:intergenic 20.0%
!!! ATATATTTTTTTGCAGTTTG+AGG - chr1_2:11514118-11514137 Msa0056040:intron 20.0%
!!! TATATTTTTTTGCAGTTTGA+GGG - chr1_2:11514119-11514138 Msa0056040:intron 20.0%
!! TAGAATCATATAATATCACA+AGG + chr1_2:11514877-11514896 None:intergenic 20.0%
!!! TCTTTTTCATAAACATCAAA+AGG + chr1_2:11515109-11515128 None:intergenic 20.0%
!! AGATTCATTCATTGATTGAT+GGG - chr1_2:11512174-11512193 Msa0056040:three_prime_UTR 25.0%
!!! TGCTTTCATTTTTTACCTAT+TGG - chr1_2:11512529-11512548 Msa0056040:intron 25.0%
!!! TTTTTTACCTATTGGATTGT+AGG - chr1_2:11512537-11512556 Msa0056040:intron 25.0%
!! ACATATCTTCAATTCTTTTC+TGG - chr1_2:11512876-11512895 Msa0056040:intron 25.0%
! CTGACTATAGAAATAGAATT+AGG + chr1_2:11513019-11513038 None:intergenic 25.0%
! AGTTTCACCATATACAAAAT+AGG - chr1_2:11513072-11513091 Msa0056040:intron 25.0%
!! TTTCCAACCTATTTTGTATA+TGG + chr1_2:11513082-11513101 None:intergenic 25.0%
!! CTTTAGACAATTGATTCTAT+AGG + chr1_2:11513368-11513387 None:intergenic 25.0%
! TTAATCATCATTCGTGAAAA+TGG - chr1_2:11513767-11513786 Msa0056040:CDS 25.0%
! TTTATTTAACTAATGCCCTA+CGG - chr1_2:11514001-11514020 Msa0056040:intron 25.0%
! ATGCTTATTAATCCTTTCTA+TGG - chr1_2:11514398-11514417 Msa0056040:intron 25.0%
! AATTGAAATAGCAAGGATTA+AGG + chr1_2:11514586-11514605 None:intergenic 25.0%
! GATAAGAAATTGAAATAGCA+AGG + chr1_2:11514593-11514612 None:intergenic 25.0%
! CTCATCTAAATCTTTATACA+TGG - chr1_2:11515267-11515286 Msa0056040:five_prime_UTR 25.0%
AATCAATGAATGAATCTGTG+TGG + chr1_2:11512171-11512190 None:intergenic 30.0%
! CAGATTCATTCATTGATTGA+TGG - chr1_2:11512173-11512192 Msa0056040:three_prime_UTR 30.0%
ACGGTGTAATCTTGAAATTA+TGG + chr1_2:11512290-11512309 None:intergenic 30.0%
! CAATCCTTTTGTGTAACAAA+TGG - chr1_2:11512372-11512391 Msa0056040:intron 30.0%
AGTTAAGTAAACAAACCAGT+GGG + chr1_2:11512447-11512466 None:intergenic 30.0%
AAGTTAAGTAAACAAACCAG+TGG + chr1_2:11512448-11512467 None:intergenic 30.0%
TAGTAAGAAAATGGACATCA+AGG - chr1_2:11512631-11512650 Msa0056040:intron 30.0%
! AAATTTGTTTGCTGCCAAAA+AGG - chr1_2:11512694-11512713 Msa0056040:intron 30.0%
! TAGTTTAACTCTGTCCTTTT+TGG + chr1_2:11512711-11512730 None:intergenic 30.0%
ACATCATCATCATCATATGT+TGG + chr1_2:11512734-11512753 None:intergenic 30.0%
! TATGATGATGATGATGTTCT+TGG - chr1_2:11512737-11512756 Msa0056040:intron 30.0%
! TATCTTCAATTCTTTTCTGG+TGG - chr1_2:11512879-11512898 Msa0056040:intron 30.0%
!! ATTCTTTAAATGGGTTGGTT+TGG - chr1_2:11512910-11512929 Msa0056040:intron 30.0%
TCACCATATACAAAATAGGT+TGG - chr1_2:11513076-11513095 Msa0056040:intron 30.0%
AGTCACACATTCCAAATATA+AGG + chr1_2:11513112-11513131 None:intergenic 30.0%
! ATATTTGGAATGTGTGACTA+TGG - chr1_2:11513113-11513132 Msa0056040:intron 30.0%
TTTAGATGCTTACTCATACA+GGG + chr1_2:11513139-11513158 None:intergenic 30.0%
ATTTAGATGCTTACTCATAC+AGG + chr1_2:11513140-11513159 None:intergenic 30.0%
GCTTATATAAGCTTATCTAC+TGG + chr1_2:11513331-11513350 None:intergenic 30.0%
GGTTGAAATGATTTCTTGTA+AGG - chr1_2:11513612-11513631 Msa0056040:intron 30.0%
AAGCTGTAAAATCCTGTAAA+GGG + chr1_2:11513642-11513661 None:intergenic 30.0%
AAAAGACAGACTTTGTAATC+AGG + chr1_2:11513831-11513850 None:intergenic 30.0%
TTATACAGATACCTGAAAAG+TGG + chr1_2:11514172-11514191 None:intergenic 30.0%
TTTATAACCATGTTATCCGT+CGG - chr1_2:11514197-11514216 Msa0056040:intron 30.0%
! TATGGATTTTGCAGCATTTA+TGG - chr1_2:11514416-11514435 Msa0056040:intron 30.0%
TTATGGTAAATCACATGACA+TGG - chr1_2:11514433-11514452 Msa0056040:intron 30.0%
! TGCTGATACTGAATCATTTT+TGG - chr1_2:11514461-11514480 Msa0056040:CDS 30.0%
TAAATAACTCACATGTTTCC+AGG + chr1_2:11514742-11514761 None:intergenic 30.0%
GAACAGAATGATAACTCTTA+TGG - chr1_2:11514800-11514819 Msa0056040:intron 30.0%
! GATTTAGATGAGTTGAATCT+TGG + chr1_2:11515259-11515278 None:intergenic 30.0%
TGAATGAATCTGTGTGGTAA+GGG + chr1_2:11512165-11512184 None:intergenic 35.0%
ATGAATGAATCTGTGTGGTA+AGG + chr1_2:11512166-11512185 None:intergenic 35.0%
TAATTTGATTGCAGAGCTAG+TGG + chr1_2:11512242-11512261 None:intergenic 35.0%
TTTCAAGATTACACCGTTAC+TGG - chr1_2:11512293-11512312 Msa0056040:CDS 35.0%
! CACACCATTTGTTACACAAA+AGG + chr1_2:11512379-11512398 None:intergenic 35.0%
! CTTTTGTGTAACAAATGGTG+TGG - chr1_2:11512377-11512396 Msa0056040:intron 35.0%
!! GAAATTTTGGAAGGAATGTG+TGG + chr1_2:11512423-11512442 None:intergenic 35.0%
TTCAGATAGAGCAGAAACAA+AGG + chr1_2:11512486-11512505 None:intergenic 35.0%
! TTTGAGACCTACAATCCAAT+AGG + chr1_2:11512547-11512566 None:intergenic 35.0%
TTTCTTTGCATTTGAATCCG+AGG + chr1_2:11512672-11512691 None:intergenic 35.0%
! TTGATTCTATAGGGCTTGTT+TGG + chr1_2:11513358-11513377 None:intergenic 35.0%
CAAGCTGTAAAATCCTGTAA+AGG + chr1_2:11513643-11513662 None:intergenic 35.0%
TTGTAATCAGGTGACTTCAT+GGG + chr1_2:11513819-11513838 None:intergenic 35.0%
TTTGTAATCAGGTGACTTCA+TGG + chr1_2:11513820-11513839 None:intergenic 35.0%
ATCACGTTTATCAAACCGTA+GGG + chr1_2:11514019-11514038 None:intergenic 35.0%
TATCACGTTTATCAAACCGT+AGG + chr1_2:11514020-11514039 None:intergenic 35.0%
! AGATTAGTTAAAGGCAAAGC+TGG + chr1_2:11514234-11514253 None:intergenic 35.0%
TGCCTTTAACTAATCTCCAT+TGG - chr1_2:11514238-11514257 Msa0056040:intron 35.0%
! CTCCAATGGAGATTAGTTAA+AGG + chr1_2:11514243-11514262 None:intergenic 35.0%
TCGAAAAAATGTGGTTGAGA+TGG + chr1_2:11514304-11514323 None:intergenic 35.0%
ATCCCATAGGTTGTGTTTAT+GGG - chr1_2:11514339-11514358 Msa0056040:intron 35.0%
ATCCCATAAACACAACCTAT+GGG + chr1_2:11514344-11514363 None:intergenic 35.0%
TATCCCATAAACACAACCTA+TGG + chr1_2:11514345-11514364 None:intergenic 35.0%
! ATAAGCATTGTTGTGACACA+GGG + chr1_2:11514386-11514405 None:intergenic 35.0%
! AATAAGCATTGTTGTGACAC+AGG + chr1_2:11514387-11514406 None:intergenic 35.0%
ATGCTGCAAAATCCATAGAA+AGG + chr1_2:11514413-11514432 None:intergenic 35.0%
TGAAATAGCAAGGATTAAGG+AGG + chr1_2:11514583-11514602 None:intergenic 35.0%
TGGTACAAGGTTATGATGAA+TGG - chr1_2:11515004-11515023 Msa0056040:five_prime_UTR 35.0%
GGTACAAGGTTATGATGAAT+GGG - chr1_2:11515005-11515024 Msa0056040:five_prime_UTR 35.0%
CTAAATCAGTCTTCTAGTGA+AGG - chr1_2:11515048-11515067 Msa0056040:five_prime_UTR 35.0%
! TTTTGTAGTAGAGACAACAG+AGG - chr1_2:11515074-11515093 Msa0056040:five_prime_UTR 35.0%
TTTGTAGTAGAGACAACAGA+GGG - chr1_2:11515075-11515094 Msa0056040:five_prime_UTR 35.0%
TAACCATGCATACTAGTGAG+TGG - chr1_2:11511999-11512018 Msa0056040:three_prime_UTR 40.0%
TAACCACTCACTAGTATGCA+TGG + chr1_2:11512005-11512024 None:intergenic 40.0%
!! ACACACTTGTTGTGACAGTT+AGG - chr1_2:11512074-11512093 Msa0056040:three_prime_UTR 40.0%
!! CACACTTGTTGTGACAGTTA+GGG - chr1_2:11512075-11512094 Msa0056040:three_prime_UTR 40.0%
!! ACACTTGTTGTGACAGTTAG+GGG - chr1_2:11512076-11512095 Msa0056040:three_prime_UTR 40.0%
AGCTAGTGGAAAAGTGAAAG+TGG + chr1_2:11512228-11512247 None:intergenic 40.0%
AAGATTACACCGTTACTGGT+TGG - chr1_2:11512297-11512316 Msa0056040:CDS 40.0%
AAATCAGCACCAACCAGTAA+CGG + chr1_2:11512309-11512328 None:intergenic 40.0%
TGTAACAAATGGTGTGGACA+TGG - chr1_2:11512383-11512402 Msa0056040:intron 40.0%
! CAAACCAGTGGGTGAAATTT+TGG + chr1_2:11512436-11512455 None:intergenic 40.0%
GAAAATGGACATCAAGGTGA+AGG - chr1_2:11512637-11512656 Msa0056040:intron 40.0%
! GATGATGATGATGTTCTTGG+AGG - chr1_2:11512740-11512759 Msa0056040:intron 40.0%
GGCTTAGAAATTCACTGATG+TGG + chr1_2:11512775-11512794 None:intergenic 40.0%
CTCTTGATGCTAACACATAC+AGG - chr1_2:11512849-11512868 Msa0056040:CDS 40.0%
! TCTATAGGGCTTGTTTGGAT+TGG + chr1_2:11513353-11513372 None:intergenic 40.0%
GTAACACGCAGATCTATGAA+AGG + chr1_2:11513571-11513590 None:intergenic 40.0%
CAAGCAATCTTCATCTGTTG+AGG + chr1_2:11513593-11513612 None:intergenic 40.0%
CTCAACAGATGAAGATTGCT+TGG - chr1_2:11513591-11513610 Msa0056040:intron 40.0%
! TTGTAAGGTGTTCCCTTTAC+AGG - chr1_2:11513627-11513646 Msa0056040:intron 40.0%
!! TTCTTTTGGAGAGCAACAGA+TGG - chr1_2:11513671-11513690 Msa0056040:CDS 40.0%
GTTTGAGGGTTCAGAAATTG+TGG - chr1_2:11514133-11514152 Msa0056040:intron 40.0%
TTAGTTAAAGGCAAAGCTGG+TGG + chr1_2:11514231-11514250 None:intergenic 40.0%
CACTCAATCAGATTCTCCAA+TGG + chr1_2:11514257-11514276 None:intergenic 40.0%
CCATGGACTTCGAAAAAATG+TGG + chr1_2:11514313-11514332 None:intergenic 40.0%
!!! CCACATTTTTTCGAAGTCCA+TGG - chr1_2:11514310-11514329 Msa0056040:intron 40.0%
GATCCCATAGGTTGTGTTTA+TGG - chr1_2:11514338-11514357 Msa0056040:intron 40.0%
TTGTTGTGACACAGGGAAAA+CGG + chr1_2:11514379-11514398 None:intergenic 40.0%
GAAGTTGAATCTCACACTTG+AGG - chr1_2:11514494-11514513 Msa0056040:CDS 40.0%
GAAATAGGCATTACGGTGAA+TGG + chr1_2:11514706-11514725 None:intergenic 40.0%
AACGGCTGAAATAGGCATTA+CGG + chr1_2:11514713-11514732 None:intergenic 40.0%
ACCATCTGTTGAAGTAGAAG+TGG + chr1_2:11514988-11515007 None:intergenic 40.0%
CTACTTCAACAGATGGTACA+AGG - chr1_2:11514991-11515010 Msa0056040:five_prime_UTR 40.0%
AGTCTCAATGAGACCAAAGT+AGG + chr1_2:11515236-11515255 None:intergenic 40.0%
!! CACTTGTTGTGACAGTTAGG+GGG - chr1_2:11512077-11512096 Msa0056040:three_prime_UTR 45.0%
! CCAGTGGGTGAAATTTTGGA+AGG + chr1_2:11512432-11512451 None:intergenic 45.0%
CCTTCCAAAATTTCACCCAC+TGG - chr1_2:11512429-11512448 Msa0056040:intron 45.0%
AATGGACATCAAGGTGAAGG+CGG - chr1_2:11512640-11512659 Msa0056040:intron 45.0%
! TGATGATGTTCTTGGAGGAC+AGG - chr1_2:11512745-11512764 Msa0056040:intron 45.0%
GAATTTCTAAGCCAGCCTAG+TGG - chr1_2:11512782-11512801 Msa0056040:intron 45.0%
AACACTGCAGCAATTCCACT+AGG + chr1_2:11512800-11512819 None:intergenic 45.0%
! TGCTGCAGTGTTGAACACAA+AGG - chr1_2:11512808-11512827 Msa0056040:CDS 45.0%
TTGGAGAGCAACAGATGGAA+TGG - chr1_2:11513676-11513695 Msa0056040:CDS 45.0%
!! GAGCTAAACGACCACTTTTC+AGG - chr1_2:11514158-11514177 Msa0056040:intron 45.0%
GGAGAATCTGATTGAGTGAC+TGG - chr1_2:11514259-11514278 Msa0056040:intron 45.0%
TGTTGTGACACAGGGAAAAC+GGG + chr1_2:11514378-11514397 None:intergenic 45.0%
ATGCCTATTTCAGCCGTTGA+AGG - chr1_2:11514715-11514734 Msa0056040:intron 45.0%
CATGTTTCCAGGACCTTCAA+CGG + chr1_2:11514731-11514750 None:intergenic 45.0%
GTGCAGAATGATGCAAGCTT+TGG - chr1_2:11514948-11514967 Msa0056040:five_prime_UTR 45.0%
! CAGAATGATGCAAGCTTTGG+TGG - chr1_2:11514951-11514970 Msa0056040:five_prime_UTR 45.0%
GCCACTTCTACTTCAACAGA+TGG - chr1_2:11514984-11515003 Msa0056040:five_prime_UTR 45.0%
TAGTAGAGACAACAGAGGGA+GGG - chr1_2:11515079-11515098 Msa0056040:five_prime_UTR 45.0%
GTGGACATGGACAACACTTC+TGG - chr1_2:11512396-11512415 Msa0056040:intron 50.0%
ACACGCACGATGAGATGCAT+TGG - chr1_2:11513712-11513731 Msa0056040:CDS 50.0%
CTTCACACCGACGGATAACA+TGG + chr1_2:11514207-11514226 None:intergenic 50.0%
! AGTGACTGGCCACCTTTAGT+GGG - chr1_2:11514273-11514292 Msa0056040:intron 50.0%
ATGGAAGACCCCACTAAAGG+TGG + chr1_2:11514285-11514304 None:intergenic 50.0%
GAGATGGAAGACCCCACTAA+AGG + chr1_2:11514288-11514307 None:intergenic 50.0%
TCCATGGCACATGATCCCAT+AGG - chr1_2:11514326-11514345 Msa0056040:intron 50.0%
ACCTATGGGATCATGTGCCA+TGG + chr1_2:11514330-11514349 None:intergenic 50.0%
GGACCTTCAACGGCTGAAAT+AGG + chr1_2:11514721-11514740 None:intergenic 50.0%
ATTTCAGCCGTTGAAGGTCC+TGG - chr1_2:11514721-11514740 Msa0056040:intron 50.0%
GTAGTAGAGACAACAGAGGG+AGG - chr1_2:11515078-11515097 Msa0056040:five_prime_UTR 50.0%
CTGAGCTTTGCAGCCTACTT+TGG - chr1_2:11515220-11515239 Msa0056040:five_prime_UTR 50.0%
CTGCAGCAATTCCACTAGGC+TGG + chr1_2:11512796-11512815 None:intergenic 55.0%
! GAGTGACTGGCCACCTTTAG+TGG - chr1_2:11514272-11514291 Msa0056040:intron 55.0%
! GTGACTGGCCACCTTTAGTG+GGG - chr1_2:11514274-11514293 Msa0056040:intron 55.0%
GGGGGAGTTGTGAGTGACAG+TGG - chr1_2:11512095-11512114 Msa0056040:three_prime_UTR 60.0%
GGTGAAGGCGGTGACTTCCT+CGG - chr1_2:11512652-11512671 Msa0056040:intron 60.0%
!! GCTGGTGGACTTCACACCGA+CGG + chr1_2:11514216-11514235 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 11511994 11515324 11511994 ID=Msa0056040;Name=Msa0056040
chr1_2 mRNA 11511994 11515324 11511994 ID=Msa0056040-mRNA-1;Parent=Msa0056040;Name=Msa0056040-mRNA-1;_AED=0.26;_eAED=0.26;_QI=408|0.66|0.71|1|0.83|0.85|7|211|252
chr1_2 exon 11511994 11512364 11511994 ID=Msa0056040-mRNA-1:exon:4398;Parent=Msa0056040-mRNA-1
chr1_2 exon 11512569 11512627 11512569 ID=Msa0056040-mRNA-1:exon:4397;Parent=Msa0056040-mRNA-1
chr1_2 exon 11512803 11512888 11512803 ID=Msa0056040-mRNA-1:exon:4396;Parent=Msa0056040-mRNA-1
chr1_2 exon 11513657 11513793 11513657 ID=Msa0056040-mRNA-1:exon:4395;Parent=Msa0056040-mRNA-1
chr1_2 exon 11514448 11514684 11514448 ID=Msa0056040-mRNA-1:exon:4394;Parent=Msa0056040-mRNA-1
chr1_2 exon 11514729 11514759 11514729 ID=Msa0056040-mRNA-1:exon:4393;Parent=Msa0056040-mRNA-1
chr1_2 exon 11514868 11515324 11514868 ID=Msa0056040-mRNA-1:exon:4392;Parent=Msa0056040-mRNA-1
chr1_2 five_prime_UTR 11514917 11515324 11514917 ID=Msa0056040-mRNA-1:five_prime_utr;Parent=Msa0056040-mRNA-1
chr1_2 CDS 11514868 11514916 11514868 ID=Msa0056040-mRNA-1:cds;Parent=Msa0056040-mRNA-1
chr1_2 CDS 11514729 11514759 11514729 ID=Msa0056040-mRNA-1:cds;Parent=Msa0056040-mRNA-1
chr1_2 CDS 11514448 11514684 11514448 ID=Msa0056040-mRNA-1:cds;Parent=Msa0056040-mRNA-1
chr1_2 CDS 11513657 11513793 11513657 ID=Msa0056040-mRNA-1:cds;Parent=Msa0056040-mRNA-1
chr1_2 CDS 11512803 11512888 11512803 ID=Msa0056040-mRNA-1:cds;Parent=Msa0056040-mRNA-1
chr1_2 CDS 11512569 11512627 11512569 ID=Msa0056040-mRNA-1:cds;Parent=Msa0056040-mRNA-1
chr1_2 CDS 11512205 11512364 11512205 ID=Msa0056040-mRNA-1:cds;Parent=Msa0056040-mRNA-1
chr1_2 three_prime_UTR 11511994 11512204 11511994 ID=Msa0056040-mRNA-1:three_prime_utr;Parent=Msa0056040-mRNA-1
Gene Sequence

>Msa0056040

ATGGACAACACTTCTGGACCACACATTCCTTCCAAAATTTCACCCACTGGTCTCAAATCATGTGAACTTAGATCTTTTCTTAAGAAAATGGACATCAAGGTGAAGGCGGTGACTTCCTCGGATTCAAATGCAAAGAAAGCAAATTTGTTTGCTGCCAAAAAGGACAGAGTTAAACTACCAACATATGATGATGATGATGTTCTTGGAGGACAGGAATACCACATCAGTGAATTTCTAAGCCAGCCTAGTGGAATTGCTGCAGTGTTGAACACAAAGGTCTTACAATCATTTCAATCTCTTGATGCTAACACATACAGGTGTGAACTACCGAAACTTAAACTTTTGAAGTTTGAAGTTACTCCTTTCATAGATCTGCGTGTTACCTCAACAGATGAAGATTGCTTGGTTGAAATGATTTCTTGTAAGGTGTTCCCTTTACAGGATTTTACAGCTTCATTTATGGTAAATCACATGACATGGAGTGATGCTGATACTGAATCATTTTTGGAAGTTGATGTGAAGTTGAATCTCACACTTGAGATCTACACGCGACCATTCACCGTAATGCCTATTTCAGCCGTTGAAGGTCCTGGAAACATAATGATGCAAGCTTTGGTGGACAAGCTCGTGCCACTTCTACTTCAACAGATGGTACAAGGTTATGATGAATGGGTTCAAAAGCAATTGTATTATCTAAATCAGTCTTCTAGTGAAGGAAATTTTGTAGTAGAGACAACAGAGGGAGGGAGAACCTTTTGA

Protein sequence

>Msa0056040

MDNTSGPHIPSKISPTGLKSCELRSFLKKMDIKVKAVTSSDSNAKKANLFAAKKDRVKLPTYDDDDVLGGQEYHISEFLSQPSGIAAVLNTKVLQSFQSLDANTYRCELPKLKLLKFEVTPFIDLRVTSTDEDCLVEMISCKVFPLQDFTASFMVNHMTWSDADTESFLEVDVKLNLTLEIYTRPFTVMPISAVEGPGNIMMQALVDKLVPLLLQQMVQGYDEWVQKQLYYLNQSSSEGNFVVETTEGGRTF*