AlfalfaGEDB | Msa0117140

M. sativa cultivar zhongmu-4 / Msa0117140

KEGG: -
GO: GO:0000003 GO:0000902 GO:0000904 GO:0001709 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009653 GO:0009791 GO:0009812 GO:0009813 GO:0009826 GO:0009856 GO:0009860 GO:0009889 GO:0009908 GO:0009932 GO:0009987 GO:0010154 GO:0010468 GO:0010500 GO:0010556 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044706 GO:0045165 GO:0048367 GO:0048438 GO:0048467 GO:0048468 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0060560 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090567 GO:0140110 GO:1901576 GO:1903506 GO:1990058 GO:2000112 GO:2001141
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0117140	XP_024638802.1	93.639	393	14	4	1	384	1	391	0.0	618

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0117140	sp\|Q9SVY1\|ZWIP2_ARATH	58.477	407	122	9	1	384	1	383	1.82e-141	410

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0117140	A0A396JLH8	93.639	393	14	4	1	384	1	391	0.0	618

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TFs/TRs:

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Gene ID	Type	Classification
Msa0117140	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000050	Msa0117140	0.800424	1.450479e-48	-8.615850e-47
Msa0001940	Msa0117140	0.807701	4.444078e-50	-8.615850e-47
Msa0017950	Msa0117140	0.806843	6.755115e-50	-8.615850e-47
Msa0024550	Msa0117140	0.828828	7.236658e-55	-8.615850e-47
Msa0097770	Msa0117140	0.810915	9.087820e-51	-8.615850e-47
Msa0117140	Msa0120400	0.835597	1.529883e-56	-8.615850e-47
Msa0117140	Msa0131900	0.805992	1.021204e-49	-8.615850e-47
Msa0117140	Msa0164330	0.802246	6.144734e-49	-8.615850e-47
Msa0117140	Msa0186010	0.808648	2.792852e-50	-8.615850e-47
Msa0117140	Msa0197100	0.807182	5.726607e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0117140	MtrunA17_Chr1g0173841	93.639	393	14	4	1	384	1	391	0.0	618
Msa0117140	MtrunA17_Chr7g0258011	74.000	300	54	7	86	379	66	347	2.33e-158	449
Msa0117140	MtrunA17_Chr8g0352011	61.165	309	84	5	86	381	54	339	5.05e-132	382
Msa0117140	MtrunA17_Chr2g0328921	63.333	300	79	6	87	383	44	315	7.46e-127	367
Msa0117140	MtrunA17_Chr5g0422571	65.368	231	51	4	140	368	59	262	1.06e-106	315
Msa0117140	MtrunA17_Chr2g0321291	61.475	244	79	4	137	379	76	305	4.38e-106	314
Msa0117140	MtrunA17_Chr4g0026521	62.553	235	66	3	146	377	75	290	1.89e-103	307
Msa0117140	MtrunA17_Chr1g0198651	74.419	172	41	1	205	373	99	270	1.65e-96	289
Msa0117140	MtrunA17_Chr4g0053341	62.673	217	52	2	143	359	38	225	9.69e-94	280
Msa0117140	MtrunA17_Chr1g0200421	35.135	185	102	6	201	370	224	405	9.55e-24	102

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0117140	AT3G57670.1	58.477	407	122	9	1	384	1	383	1.85e-142	410
Msa0117140	AT1G51220.1	55.301	349	126	5	39	376	8	337	4.06e-130	377
Msa0117140	AT3G20880.1	56.637	339	115	10	49	376	93	410	6.60e-120	353
Msa0117140	AT1G13290.1	66.818	220	42	4	144	361	53	243	3.39e-101	302
Msa0117140	AT1G08290.1	58.091	241	91	4	139	369	92	332	8.30e-98	295
Msa0117140	AT1G34790.1	61.472	231	75	1	145	375	83	299	6.55e-97	291
Msa0117140	AT1G34370.3	38.776	147	79	4	215	352	28	172	1.22e-24	102
Msa0117140	AT1G34370.2	38.776	147	79	4	215	352	238	382	3.46e-24	104
Msa0117140	AT1G34370.1	38.776	147	79	4	215	352	238	382	3.46e-24	104
Msa0117140	AT5G22890.1	39.865	148	76	5	223	360	219	363	3.32e-22	97.4

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Find 82 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATCATATAAGAGCTTT+TGG	0.231134	1_3:+37377716	Msa0117140:CDS
AAAGGAAGAATATGAAGATG+AGG	0.594322	1_3:+37374783	Msa0117140:CDS
AAAGGACCAGAATCTCTAAG+AGG	0.574044	1_3:+37377425	Msa0117140:CDS
AACAGTTCTCAGGCAATTTG+TGG	0.435474	1_3:-37374398	None:intergenic
AAGCTTTGGTATTGTCTTTG+TGG	0.415419	1_3:+37377665	Msa0117140:CDS
AAGGAAAAGGTATAGTGTTG+AGG	0.576256	1_3:-37374431	None:intergenic
AATTGTGAAGATAATTAGGA+TGG	0.628754	1_3:-37374594	None:intergenic
AATTTATTAACCGACTATGA+TGG	0.462898	1_3:+37377902	Msa0117140:three_prime_UTR
ACACATTATAAAAGGAAACA+TGG	0.579095	1_3:+37377560	Msa0117140:CDS
ACAGGACAAGAGAATTGTGT+AGG	0.653674	1_3:-37375138	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGAGAAGAAATTGGAGTAA+GGG	-	chr1_3:37374498-37374517	None:intergenic	30.0%
GAAATTGGATGAGAAGAAAT+TGG	-	chr1_3:37374506-37374525	None:intergenic	30.0%
ATAATTAGGATGGTTGTGAT+GGG	-	chr1_3:37374587-37374606	None:intergenic	30.0%
TGTTATTGTTGAAAGTTGTG+TGG	-	chr1_3:37374627-37374646	None:intergenic	30.0%
AAAGGAAGAATATGAAGATG+AGG	+	chr1_3:37374783-37374802	Msa0117140:CDS	30.0%
TTAAAGTGCAAGATTGATGA+TGG	-	chr1_3:37374846-37374865	None:intergenic	30.0%
TCATCAATCTTGCACTTTAA+TGG	+	chr1_3:37374846-37374865	Msa0117140:CDS	30.0%
TACCAATAGATCACTTAACA+AGG	+	chr1_3:37375074-37375093	Msa0117140:CDS	30.0%
ACCAATAGATCACTTAACAA+GGG	+	chr1_3:37375075-37375094	Msa0117140:CDS	30.0%
ATAAGGAGAAGAAGATCTAT+AGG	-	chr1_3:37375265-37375284	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	37374391	37377964	37374391	ID=Msa0117140;Name=Msa0117140
chr1_3	mRNA	37374391	37377964	37374391	ID=Msa0117140-mRNA-1;Parent=Msa0117140;Name=Msa0117140-mRNA-1;_AED=0.00;_eAED=0.00;_QI=96\|1\|1\|1\|1\|1\|2\|129\|384
chr1_3	exon	37374391	37375197	37374391	ID=Msa0117140-mRNA-1:exon:11876;Parent=Msa0117140-mRNA-1
chr1_3	exon	37377392	37377964	37377392	ID=Msa0117140-mRNA-1:exon:11877;Parent=Msa0117140-mRNA-1
chr1_3	five_prime_UTR	37374391	37374486	37374391	ID=Msa0117140-mRNA-1:five_prime_utr;Parent=Msa0117140-mRNA-1
chr1_3	CDS	37374487	37375197	37374487	ID=Msa0117140-mRNA-1:cds;Parent=Msa0117140-mRNA-1
chr1_3	CDS	37377392	37377835	37377392	ID=Msa0117140-mRNA-1:cds;Parent=Msa0117140-mRNA-1
chr1_3	three_prime_UTR	37377836	37377964	37377836	ID=Msa0117140-mRNA-1:three_prime_utr;Parent=Msa0117140-mRNA-1

Gene Sequence

>Msa0117140

ATGGCAGACCCTTACTCCAATTTCTTCTCATCCAATTTCTTCCAATTCAATAATAATAATCCAACAAACCATTACCCTTCTTCTTCAAACCCTTCATCCCATCACAACCATCCTAATTATCTTCACAATTTCATTAACCACACAACTTTCAACAATAACAACACCTTTTTCCACTACCATCATCATCATCATCACCATCTTCAAACTACAACTGCATCTTGTTCTTCCTCTTCTTCTTCACCATCTTCCCCTCCTTTAAAAGAAGCCCTTCCACTTTTGAGTCTTATCCCAACAAAAAAGGAAGAATATGAAGATGAGGTACAAAATCAACATCAACAACATCACCATCATCATCACCATCATCAATCTTGCACTTTAATGGATGTGGATGATTGTAGTCATAAAGTAGAAGAAAAGGAAGATCATGAAGGTGTGACTGTTGCACTTCATATAGGGTTACCAAGCCCTAGTTCTTCTGAGATTGCAACTATGATGTTGTCTTCATCTTCTGAGATGATGATTAATGACCAAGATCATTTACAAGATGTTACTATTAGCGACGATTCCTTTTCGGCTGGATTTTTGAGTACCAATAGATCACTTAACAAGGGTCAGTATTGGATCCCTACTCCTTCTCAGATTCTTATTGGTCCTACACAATTCTCTTGTCCTGTTTGCTGCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGACATGGATCACAATACAGAAAAGGACCAGAATCTCTAAGAGGTACACAACCAACAGGTATGCTAAGGCTTCCTTGCTATTGTTGTTCACCAGGTTGCAGGAACAACATTGATCACCCAAGAGCAAAGCCATTAAAAGATTTCAGAACACTTCAAACACATTATAAAAGGAAACATGGGATTAAGCCTTTTATGTGTAGAAAATGTGGTAAGGCTTTTGCTGTTAGAGGAGATTGGAGAACTCATGAGAAGAACTGTGGAAAGCTTTGGTATTGTCTTTGTGGTTCCGATTTTAAGCATAAGCGGTCGCTTAAAGATCATATAAGAGCTTTTGGGAGTGGTCATGCTGCTTATGGAATTGATGGTTTTGAAGAAGAGGATGAACCTGCTTCTGAAGTTGAACAAGATAATGAATCTACTCAGACTCAGTAG

Protein sequence

>Msa0117140

MADPYSNFFSSNFFQFNNNNPTNHYPSSSNPSSHHNHPNYLHNFINHTTFNNNNTFFHYHHHHHHHLQTTTASCSSSSSSPSSPPLKEALPLLSLIPTKKEEYEDEVQNQHQQHHHHHHHHQSCTLMDVDDCSHKVEEKEDHEGVTVALHIGLPSPSSSEIATMMLSSSSEMMINDQDHLQDVTISDDSFSAGFLSTNRSLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCLCGSDFKHKRSLKDHIRAFGSGHAAYGIDGFEEEDEPASEVEQDNESTQTQ*