Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0117140 | XP_024638802.1 | 93.639 | 393 | 14 | 4 | 1 | 384 | 1 | 391 | 0.0 | 618 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0117140 | sp|Q9SVY1|ZWIP2_ARATH | 58.477 | 407 | 122 | 9 | 1 | 384 | 1 | 383 | 1.82e-141 | 410 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0117140 | A0A396JLH8 | 93.639 | 393 | 14 | 4 | 1 | 384 | 1 | 391 | 0.0 | 618 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0117140 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0117140 | 0.800424 | 1.450479e-48 | -8.615850e-47 |
| Msa0001940 | Msa0117140 | 0.807701 | 4.444078e-50 | -8.615850e-47 |
| Msa0017950 | Msa0117140 | 0.806843 | 6.755115e-50 | -8.615850e-47 |
| Msa0024550 | Msa0117140 | 0.828828 | 7.236658e-55 | -8.615850e-47 |
| Msa0097770 | Msa0117140 | 0.810915 | 9.087820e-51 | -8.615850e-47 |
| Msa0117140 | Msa0120400 | 0.835597 | 1.529883e-56 | -8.615850e-47 |
| Msa0117140 | Msa0131900 | 0.805992 | 1.021204e-49 | -8.615850e-47 |
| Msa0117140 | Msa0164330 | 0.802246 | 6.144734e-49 | -8.615850e-47 |
| Msa0117140 | Msa0186010 | 0.808648 | 2.792852e-50 | -8.615850e-47 |
| Msa0117140 | Msa0197100 | 0.807182 | 5.726607e-50 | -8.615850e-47 |
| Msa0117140 | Msa0225100 | 0.813867 | 2.059871e-51 | -8.615850e-47 |
| Msa0117140 | Msa0239030 | 0.815638 | 8.341697e-52 | -8.615850e-47 |
| Msa0117140 | Msa0244640 | 0.802396 | 5.723635e-49 | -8.615850e-47 |
| Msa0117140 | Msa0265850 | 0.822302 | 2.547377e-53 | -8.615850e-47 |
| Msa0117140 | Msa0266180 | 0.824292 | 8.733229e-54 | -8.615850e-47 |
| Msa0117140 | Msa0266500 | 0.819664 | 1.031418e-52 | -8.615850e-47 |
| Msa0117140 | Msa0276740 | 0.830045 | 3.662038e-55 | -8.615850e-47 |
| Msa0117140 | Msa0287740 | 0.809819 | 1.567340e-50 | -8.615850e-47 |
| Msa0117140 | Msa0300270 | 0.819109 | 1.380003e-52 | -8.615850e-47 |
| Msa0117140 | Msa0300320 | 0.828195 | 1.028678e-54 | -8.615850e-47 |
| Msa0117140 | Msa0316680 | 0.821067 | 4.916331e-53 | -8.615850e-47 |
| Msa0117140 | Msa0336320 | 0.806683 | 7.302111e-50 | -8.615850e-47 |
| Msa0117140 | Msa0365100 | 0.807741 | 4.358844e-50 | -8.615850e-47 |
| Msa0117140 | Msa0378720 | 0.814115 | 1.815306e-51 | -8.615850e-47 |
| Msa0117140 | Msa0427100 | 0.806070 | 9.832298e-50 | -8.615850e-47 |
| Msa0117140 | Msa0427120 | 0.812261 | 4.635066e-51 | -8.615850e-47 |
| Msa0117140 | Msa0464680 | 0.801083 | 1.064393e-48 | -8.615850e-47 |
| Msa0117140 | Msa0474730 | 0.804193 | 2.429882e-49 | -8.615850e-47 |
| Msa0117140 | Msa0479170 | 0.800897 | 1.161955e-48 | -8.615850e-47 |
| Msa0117140 | Msa0479200 | 0.800830 | 1.198655e-48 | -8.615850e-47 |
| Msa0117140 | Msa0581470 | 0.809917 | 1.492991e-50 | -8.615850e-47 |
| Msa0117140 | Msa0683510 | 0.801744 | 7.793513e-49 | -8.615850e-47 |
| Msa0117140 | Msa0805330 | 0.802290 | 6.017028e-49 | -8.615850e-47 |
| Msa0117140 | Msa0828560 | 0.805798 | 1.121588e-49 | -8.615850e-47 |
| Msa0117140 | Msa0861510 | 0.804528 | 2.068871e-49 | -8.615850e-47 |
| Msa0117140 | Msa0861600 | 0.803545 | 3.311961e-49 | -8.615850e-47 |
| Msa0117140 | Msa0909140 | 0.806116 | 9.615142e-50 | -8.615850e-47 |
| Msa0117140 | Msa0964840 | 0.805987 | 1.023602e-49 | -8.615850e-47 |
| Msa0117140 | Msa0967380 | 0.853064 | 3.058875e-61 | -8.615850e-47 |
| Msa0117140 | Msa0967870 | 0.809525 | 1.812692e-50 | -8.615850e-47 |
| Msa0117140 | Msa1043370 | 0.819076 | 1.404276e-52 | -8.615850e-47 |
| Msa0117140 | Msa1087650 | 0.810483 | 1.127246e-50 | -8.615850e-47 |
| Msa0117140 | Msa1092010 | 0.801707 | 7.930240e-49 | -8.615850e-47 |
| Msa0117140 | Msa1228200 | 0.817362 | 3.430243e-52 | -8.615850e-47 |
| Msa0117140 | Msa1267770 | 0.831340 | 1.764119e-55 | -8.615850e-47 |
| Msa0117140 | Msa1297230 | 0.805136 | 1.543986e-49 | -8.615850e-47 |
| Msa0117140 | Msa1298370 | 0.804189 | 2.434021e-49 | -8.615850e-47 |
| Msa0117140 | Msa1314650 | 0.801926 | 7.151817e-49 | -8.615850e-47 |
| Msa0117140 | Msa1330420 | 0.812134 | 4.939342e-51 | -8.615850e-47 |
| Msa0117140 | Msa1357790 | 0.810764 | 9.798138e-51 | -8.615850e-47 |
| Msa0117140 | Msa1366340 | 0.822270 | 2.591513e-53 | -8.615850e-47 |
| Msa0117140 | Msa1385890 | 0.807688 | 4.472545e-50 | -8.615850e-47 |
| Msa0117140 | Msa1390700 | 0.810766 | 9.790152e-51 | -8.615850e-47 |
| Msa0117140 | Msa1392900 | 0.803159 | 3.981047e-49 | -8.615850e-47 |
| Msa0117140 | Msa1392910 | 0.807963 | 3.909694e-50 | -8.615850e-47 |
| Msa0117140 | Msa1425880 | 0.801651 | 8.141029e-49 | -8.615850e-47 |
| Msa0117140 | Msa1444510 | 0.810635 | 1.045153e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0117140 | MtrunA17_Chr1g0173841 | 93.639 | 393 | 14 | 4 | 1 | 384 | 1 | 391 | 0.0 | 618 |
| Msa0117140 | MtrunA17_Chr7g0258011 | 74.000 | 300 | 54 | 7 | 86 | 379 | 66 | 347 | 2.33e-158 | 449 |
| Msa0117140 | MtrunA17_Chr8g0352011 | 61.165 | 309 | 84 | 5 | 86 | 381 | 54 | 339 | 5.05e-132 | 382 |
| Msa0117140 | MtrunA17_Chr2g0328921 | 63.333 | 300 | 79 | 6 | 87 | 383 | 44 | 315 | 7.46e-127 | 367 |
| Msa0117140 | MtrunA17_Chr5g0422571 | 65.368 | 231 | 51 | 4 | 140 | 368 | 59 | 262 | 1.06e-106 | 315 |
| Msa0117140 | MtrunA17_Chr2g0321291 | 61.475 | 244 | 79 | 4 | 137 | 379 | 76 | 305 | 4.38e-106 | 314 |
| Msa0117140 | MtrunA17_Chr4g0026521 | 62.553 | 235 | 66 | 3 | 146 | 377 | 75 | 290 | 1.89e-103 | 307 |
| Msa0117140 | MtrunA17_Chr1g0198651 | 74.419 | 172 | 41 | 1 | 205 | 373 | 99 | 270 | 1.65e-96 | 289 |
| Msa0117140 | MtrunA17_Chr4g0053341 | 62.673 | 217 | 52 | 2 | 143 | 359 | 38 | 225 | 9.69e-94 | 280 |
| Msa0117140 | MtrunA17_Chr1g0200421 | 35.135 | 185 | 102 | 6 | 201 | 370 | 224 | 405 | 9.55e-24 | 102 |
| Msa0117140 | MtrunA17_Chr2g0320341 | 37.584 | 149 | 84 | 4 | 223 | 364 | 246 | 392 | 1.85e-21 | 95.1 |
| Msa0117140 | MtrunA17_Chr1g0199101 | 35.374 | 147 | 83 | 6 | 208 | 352 | 63 | 199 | 9.91e-20 | 90.9 |
| Msa0117140 | MtrunA17_Chr7g0268961 | 34.437 | 151 | 83 | 5 | 209 | 352 | 33 | 174 | 1.48e-19 | 90.1 |
| Msa0117140 | MtrunA17_Chr1g0151351 | 35.915 | 142 | 80 | 5 | 213 | 352 | 62 | 194 | 1.83e-19 | 89.7 |
| Msa0117140 | MtrunA17_Chr4g0029521 | 35.971 | 139 | 80 | 4 | 215 | 352 | 61 | 191 | 1.93e-19 | 89.7 |
| Msa0117140 | MtrunA17_Chr1g0210821 | 34.932 | 146 | 85 | 5 | 208 | 352 | 60 | 196 | 2.27e-19 | 89.7 |
| Msa0117140 | MtrunA17_Chr1g0181381 | 31.977 | 172 | 100 | 5 | 208 | 378 | 54 | 209 | 2.36e-19 | 89.7 |
| Msa0117140 | MtrunA17_Chr1g0162971 | 36.691 | 139 | 78 | 5 | 215 | 352 | 64 | 193 | 2.44e-19 | 89.4 |
| Msa0117140 | MtrunA17_Chr1g0163001 | 34.932 | 146 | 85 | 5 | 208 | 352 | 59 | 195 | 3.74e-19 | 89.0 |
| Msa0117140 | MtrunA17_Chr1g0191991 | 32.948 | 173 | 90 | 7 | 209 | 373 | 74 | 228 | 3.92e-19 | 89.0 |
| Msa0117140 | MtrunA17_Chr1g0185121 | 35.915 | 142 | 80 | 5 | 213 | 352 | 61 | 193 | 4.06e-19 | 88.6 |
| Msa0117140 | MtrunA17_Chr2g0326381 | 34.932 | 146 | 86 | 4 | 208 | 352 | 48 | 185 | 9.31e-19 | 87.4 |
| Msa0117140 | MtrunA17_Chr2g0330171 | 33.333 | 147 | 86 | 5 | 208 | 352 | 62 | 198 | 1.61e-18 | 87.0 |
| Msa0117140 | MtrunA17_Chr8g0342421 | 34.286 | 140 | 80 | 5 | 215 | 352 | 85 | 214 | 1.78e-18 | 87.0 |
| Msa0117140 | MtrunA17_Chr7g0263941 | 35.374 | 147 | 83 | 6 | 208 | 352 | 50 | 186 | 2.07e-18 | 86.3 |
| Msa0117140 | MtrunA17_Chr3g0123941 | 36.025 | 161 | 93 | 7 | 223 | 379 | 139 | 293 | 4.93e-18 | 84.3 |
| Msa0117140 | MtrunA17_Chr8g0382121 | 37.143 | 140 | 81 | 6 | 223 | 357 | 127 | 264 | 1.30e-17 | 82.8 |
| Msa0117140 | MtrunA17_Chr4g0040571 | 30.857 | 175 | 103 | 5 | 208 | 381 | 55 | 212 | 3.27e-17 | 83.2 |
| Msa0117140 | MtrunA17_Chr8g0373541 | 34.532 | 139 | 81 | 4 | 215 | 352 | 56 | 185 | 4.84e-17 | 82.8 |
| Msa0117140 | MtrunA17_Chr2g0324991 | 33.803 | 142 | 84 | 5 | 208 | 347 | 8 | 141 | 6.55e-16 | 74.3 |
| Msa0117140 | MtrunA17_Chr3g0141431 | 31.655 | 139 | 87 | 3 | 213 | 350 | 43 | 174 | 8.26e-15 | 75.5 |
| Msa0117140 | MtrunA17_Chr8g0375521 | 29.834 | 181 | 104 | 7 | 183 | 348 | 6 | 178 | 1.45e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0117140 | AT3G57670.1 | 58.477 | 407 | 122 | 9 | 1 | 384 | 1 | 383 | 1.85e-142 | 410 |
| Msa0117140 | AT1G51220.1 | 55.301 | 349 | 126 | 5 | 39 | 376 | 8 | 337 | 4.06e-130 | 377 |
| Msa0117140 | AT3G20880.1 | 56.637 | 339 | 115 | 10 | 49 | 376 | 93 | 410 | 6.60e-120 | 353 |
| Msa0117140 | AT1G13290.1 | 66.818 | 220 | 42 | 4 | 144 | 361 | 53 | 243 | 3.39e-101 | 302 |
| Msa0117140 | AT1G08290.1 | 58.091 | 241 | 91 | 4 | 139 | 369 | 92 | 332 | 8.30e-98 | 295 |
| Msa0117140 | AT1G34790.1 | 61.472 | 231 | 75 | 1 | 145 | 375 | 83 | 299 | 6.55e-97 | 291 |
| Msa0117140 | AT1G34370.3 | 38.776 | 147 | 79 | 4 | 215 | 352 | 28 | 172 | 1.22e-24 | 102 |
| Msa0117140 | AT1G34370.2 | 38.776 | 147 | 79 | 4 | 215 | 352 | 238 | 382 | 3.46e-24 | 104 |
| Msa0117140 | AT1G34370.1 | 38.776 | 147 | 79 | 4 | 215 | 352 | 238 | 382 | 3.46e-24 | 104 |
| Msa0117140 | AT5G22890.1 | 39.865 | 148 | 76 | 5 | 223 | 360 | 219 | 363 | 3.32e-22 | 97.4 |
| Msa0117140 | AT5G03150.1 | 32.353 | 170 | 98 | 5 | 215 | 383 | 76 | 229 | 8.39e-20 | 91.3 |
| Msa0117140 | AT1G55110.3 | 36.620 | 142 | 79 | 5 | 213 | 352 | 84 | 216 | 1.52e-19 | 90.5 |
| Msa0117140 | AT1G55110.1 | 36.620 | 142 | 79 | 5 | 213 | 352 | 84 | 216 | 1.52e-19 | 90.5 |
| Msa0117140 | AT1G55110.2 | 36.620 | 142 | 79 | 5 | 213 | 352 | 84 | 216 | 1.52e-19 | 90.5 |
| Msa0117140 | AT2G02070.2 | 34.194 | 155 | 92 | 4 | 199 | 352 | 59 | 204 | 2.26e-19 | 90.5 |
| Msa0117140 | AT2G02070.1 | 34.194 | 155 | 92 | 4 | 199 | 352 | 59 | 204 | 2.26e-19 | 90.5 |
| Msa0117140 | AT2G02080.1 | 35.461 | 141 | 81 | 4 | 213 | 352 | 75 | 206 | 4.27e-19 | 89.4 |
| Msa0117140 | AT2G02080.4 | 35.461 | 141 | 81 | 4 | 213 | 352 | 75 | 206 | 4.27e-19 | 89.4 |
| Msa0117140 | AT2G02080.5 | 35.461 | 141 | 81 | 4 | 213 | 352 | 75 | 206 | 4.27e-19 | 89.4 |
| Msa0117140 | AT2G02080.3 | 35.461 | 141 | 81 | 4 | 213 | 352 | 75 | 206 | 4.27e-19 | 89.4 |
| Msa0117140 | AT1G14580.1 | 35.374 | 147 | 83 | 5 | 208 | 352 | 69 | 205 | 1.45e-18 | 87.4 |
| Msa0117140 | AT1G14580.2 | 35.374 | 147 | 83 | 5 | 208 | 352 | 69 | 205 | 1.45e-18 | 87.4 |
| Msa0117140 | AT1G14580.3 | 35.374 | 147 | 83 | 5 | 208 | 352 | 83 | 219 | 1.48e-18 | 87.4 |
| Msa0117140 | AT2G02080.6 | 36.232 | 138 | 78 | 4 | 216 | 352 | 1 | 129 | 2.35e-18 | 86.7 |
| Msa0117140 | AT2G02080.2 | 36.232 | 138 | 78 | 4 | 216 | 352 | 1 | 129 | 2.35e-18 | 86.7 |
| Msa0117140 | AT5G66730.1 | 35.915 | 142 | 79 | 6 | 213 | 352 | 53 | 184 | 9.27e-18 | 85.1 |
| Msa0117140 | AT3G45260.2 | 35.971 | 139 | 80 | 4 | 215 | 352 | 62 | 192 | 2.06e-17 | 84.0 |
| Msa0117140 | AT3G45260.1 | 35.971 | 139 | 80 | 4 | 215 | 352 | 62 | 192 | 2.06e-17 | 84.0 |
| Msa0117140 | AT5G60470.2 | 33.813 | 139 | 83 | 4 | 215 | 352 | 67 | 197 | 3.19e-17 | 83.6 |
| Msa0117140 | AT5G60470.3 | 33.813 | 139 | 83 | 4 | 215 | 352 | 63 | 193 | 3.23e-17 | 83.6 |
| Msa0117140 | AT5G60470.1 | 33.813 | 139 | 83 | 4 | 215 | 352 | 58 | 188 | 3.41e-17 | 83.2 |
| Msa0117140 | AT5G44160.1 | 33.813 | 139 | 82 | 4 | 215 | 352 | 60 | 189 | 4.27e-17 | 83.2 |
| Msa0117140 | AT5G44160.2 | 33.813 | 139 | 82 | 4 | 215 | 352 | 21 | 150 | 4.94e-17 | 82.8 |
| Msa0117140 | AT1G03840.2 | 33.562 | 146 | 87 | 5 | 208 | 352 | 55 | 191 | 6.51e-17 | 82.8 |
| Msa0117140 | AT1G03840.1 | 32.192 | 146 | 89 | 4 | 208 | 352 | 57 | 193 | 7.43e-17 | 82.4 |
| Msa0117140 | AT3G13810.5 | 32.877 | 146 | 89 | 4 | 208 | 352 | 81 | 218 | 1.77e-16 | 81.3 |
| Msa0117140 | AT3G13810.2 | 32.877 | 146 | 89 | 4 | 208 | 352 | 87 | 224 | 1.81e-16 | 81.3 |
| Msa0117140 | AT3G13810.4 | 32.877 | 146 | 89 | 4 | 208 | 352 | 86 | 223 | 1.84e-16 | 81.3 |
| Msa0117140 | AT3G13810.1 | 32.877 | 146 | 89 | 4 | 208 | 352 | 86 | 223 | 1.84e-16 | 81.3 |
| Msa0117140 | AT3G13810.6 | 32.877 | 146 | 89 | 4 | 208 | 352 | 67 | 204 | 2.04e-16 | 81.3 |
| Msa0117140 | AT3G13810.3 | 32.877 | 146 | 89 | 4 | 208 | 352 | 73 | 210 | 2.13e-16 | 81.3 |
| Msa0117140 | AT4G02670.2 | 32.192 | 146 | 90 | 3 | 208 | 352 | 71 | 208 | 3.06e-16 | 80.1 |
| Msa0117140 | AT4G02670.1 | 32.192 | 146 | 90 | 3 | 208 | 352 | 69 | 206 | 3.09e-16 | 80.1 |
| Msa0117140 | AT3G50700.1 | 33.333 | 141 | 84 | 4 | 213 | 352 | 55 | 186 | 3.54e-16 | 80.1 |
Find 82 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCAATCTTGCACTTTAA+TGG | 0.133562 | 1_3:+37374846 | Msa0117140:CDS |
| ATTATTGAATTGGAAGAAAT+TGG | 0.185958 | 1_3:-37374518 | None:intergenic |
| ACTCCTTCTCAGATTCTTAT+TGG | 0.201568 | 1_3:+37375114 | Msa0117140:CDS |
| TGTGTACCTCTTAGAGATTC+TGG | 0.222352 | 1_3:-37377431 | None:intergenic |
| AAAGATCATATAAGAGCTTT+TGG | 0.231134 | 1_3:+37377716 | Msa0117140:CDS |
| ATGAAATTGTGAAGATAATT+AGG | 0.241835 | 1_3:-37374598 | None:intergenic |
| GGGAGTGGTCATGCTGCTTA+TGG | 0.311784 | 1_3:+37377737 | Msa0117140:CDS |
| GAAATTGGATGAGAAGAAAT+TGG | 0.315683 | 1_3:-37374503 | None:intergenic |
| TTGGATTATTATTATTGAAT+TGG | 0.318920 | 1_3:-37374528 | None:intergenic |
| CACTTCAAACACATTATAAA+AGG | 0.323447 | 1_3:+37377552 | Msa0117140:CDS |
| CATGTTGTTGTATCTGTTGA+AGG | 0.332315 | 1_3:-37375172 | None:intergenic |
| GTGACTGTTGCACTTCATAT+AGG | 0.339638 | 1_3:+37374919 | Msa0117140:CDS |
| TGACTGTTGCACTTCATATA+GGG | 0.360463 | 1_3:+37374920 | Msa0117140:CDS |
| ACCCTTGTTAAGTGATCTAT+TGG | 0.367615 | 1_3:-37375076 | None:intergenic |
| ATTGTTGTTCACCAGGTTGC+AGG | 0.377391 | 1_3:+37377483 | Msa0117140:CDS |
| CCTTGCTATTGTTGTTCACC+AGG | 0.381067 | 1_3:+37377476 | Msa0117140:CDS |
| CATGCTGCTTATGGAATTGA+TGG | 0.388035 | 1_3:+37377746 | Msa0117140:CDS |
| GAAGAAGGGTAATGGTTTGT+TGG | 0.403794 | 1_3:-37374547 | None:intergenic |
| TAGTCATAAAGTAGAAGAAA+AGG | 0.405108 | 1_3:+37374882 | Msa0117140:CDS |
| ATGATGATGGTAGTGGAAAA+AGG | 0.413174 | 1_3:-37374650 | None:intergenic |
| AAGCTTTGGTATTGTCTTTG+TGG | 0.415419 | 1_3:+37377665 | Msa0117140:CDS |
| CTTATCCTCAGATGCATATG+TGG | 0.432175 | 1_3:+37377381 | Msa0117140:intron |
| AACAGTTCTCAGGCAATTTG+TGG | 0.435474 | 1_3:-37374398 | None:intergenic |
| GATGAGAAGAAATTGGAGTA+AGG | 0.440716 | 1_3:-37374496 | None:intergenic |
| AGAAGAACTGTGGAAAGCTT+TGG | 0.443136 | 1_3:+37377651 | Msa0117140:CDS |
| GGATGGTTGTGATGGGATGA+AGG | 0.449855 | 1_3:-37374577 | None:intergenic |
| ATCTTGCACTTTAATGGATG+TGG | 0.454122 | 1_3:+37374852 | Msa0117140:CDS |
| TAACATCTTGTAAATGATCT+TGG | 0.456063 | 1_3:-37375014 | None:intergenic |
| TCTTGTTCAACTTCAGAAGC+AGG | 0.458660 | 1_3:-37377788 | None:intergenic |
| TGAGAGTGGGAACAGTTCTC+AGG | 0.460997 | 1_3:-37374408 | None:intergenic |
| CGACCGCTTATGCTTAAAAT+CGG | 0.461660 | 1_3:-37377690 | None:intergenic |
| AATTTATTAACCGACTATGA+TGG | 0.462898 | 1_3:+37377902 | Msa0117140:three_prime_UTR |
| CACTTAACAAGGGTCAGTAT+TGG | 0.467580 | 1_3:+37375085 | Msa0117140:CDS |
| CTAAGAGGTACACAACCAAC+AGG | 0.500045 | 1_3:+37377440 | Msa0117140:CDS |
| ATCTCAGAAGAACTAGGGCT+TGG | 0.503709 | 1_3:-37374946 | None:intergenic |
| GGTTTGAAGAAGAAGGGTAA+TGG | 0.512390 | 1_3:-37374555 | None:intergenic |
| GATAATTAGGATGGTTGTGA+TGG | 0.516129 | 1_3:-37374585 | None:intergenic |
| GATGGTTGTGATGGGATGAA+GGG | 0.517462 | 1_3:-37374576 | None:intergenic |
| AGTTCTCAAATTTGAAACCA+TGG | 0.519692 | 1_3:-37377938 | None:intergenic |
| GGAAGATGGTGAAGAAGAAG+AGG | 0.526711 | 1_3:-37374713 | None:intergenic |
| GTATAGTGTTGAGGTGAGAG+TGG | 0.527857 | 1_3:-37374422 | None:intergenic |
| CAGATGCATATGTGGGGACA+TGG | 0.531260 | 1_3:+37377389 | Msa0117140:intron |
| CATGGATCACAATACAGAAA+AGG | 0.532079 | 1_3:+37377407 | Msa0117140:CDS |
| TATGTGTAGAAAATGTGGTA+AGG | 0.535524 | 1_3:+37377595 | Msa0117140:CDS |
| TTATCCTCAGATGCATATGT+GGG | 0.539918 | 1_3:+37377382 | Msa0117140:intron |
| GTTGCAATCTCAGAAGAACT+AGG | 0.540111 | 1_3:-37374952 | None:intergenic |
| ATAAGAATCTGAGAAGGAGT+AGG | 0.541391 | 1_3:-37375111 | None:intergenic |
| GATGAAGGGTTTGAAGAAGA+AGG | 0.545010 | 1_3:-37374562 | None:intergenic |
| TATAGTGTTGAGGTGAGAGT+GGG | 0.552979 | 1_3:-37374421 | None:intergenic |
| ATGAGAAGAAATTGGAGTAA+GGG | 0.562814 | 1_3:-37374495 | None:intergenic |
| ATGAAGGGTTTGAAGAAGAA+GGG | 0.562956 | 1_3:-37374561 | None:intergenic |
| GAAGAAAAGGAAGATCATGA+AGG | 0.566975 | 1_3:+37374895 | Msa0117140:CDS |
| ATGCAGTTGTAGTTTGAAGA+TGG | 0.571936 | 1_3:-37374681 | None:intergenic |
| TCAATGTTGTTCCTGCAACC+TGG | 0.573538 | 1_3:-37377494 | None:intergenic |
| TAAGAATCTGAGAAGGAGTA+GGG | 0.573637 | 1_3:-37375110 | None:intergenic |
| AAAGGACCAGAATCTCTAAG+AGG | 0.574044 | 1_3:+37377425 | Msa0117140:CDS |
| CACATTATAAAAGGAAACAT+GGG | 0.574183 | 1_3:+37377561 | Msa0117140:CDS |
| AAGGAAAAGGTATAGTGTTG+AGG | 0.576256 | 1_3:-37374431 | None:intergenic |
| ACACATTATAAAAGGAAACA+TGG | 0.579095 | 1_3:+37377560 | Msa0117140:CDS |
| CACAACCAACAGGTATGCTA+AGG | 0.584031 | 1_3:+37377450 | Msa0117140:CDS |
| TGTTATTGTTGAAAGTTGTG+TGG | 0.590691 | 1_3:-37374624 | None:intergenic |
| GGATAAGACTCAAAAGTGGA+AGG | 0.592568 | 1_3:-37374753 | None:intergenic |
| TTGCAATCTCAGAAGAACTA+GGG | 0.593596 | 1_3:-37374951 | None:intergenic |
| AAAGGAAGAATATGAAGATG+AGG | 0.594322 | 1_3:+37374783 | Msa0117140:CDS |
| ATTGATGATGGTGATGATGA+TGG | 0.595308 | 1_3:-37374831 | None:intergenic |
| ATAACATAATATAATTCACT+TGG | 0.595694 | 1_3:-37377869 | None:intergenic |
| TTATATATCTCCATCATAGT+CGG | 0.598789 | 1_3:-37377912 | None:intergenic |
| GTTGGGATAAGACTCAAAAG+TGG | 0.609834 | 1_3:-37374757 | None:intergenic |
| TTAAAGTGCAAGATTGATGA+TGG | 0.612972 | 1_3:-37374843 | None:intergenic |
| ATAATTAGGATGGTTGTGAT+GGG | 0.613033 | 1_3:-37374584 | None:intergenic |
| GGAAGCCTTAGCATACCTGT+TGG | 0.618027 | 1_3:-37377455 | None:intergenic |
| TACCAATAGATCACTTAACA+AGG | 0.618619 | 1_3:+37375074 | Msa0117140:CDS |
| ATGGAGATATATAATAGCCA+TGG | 0.619132 | 1_3:+37377921 | Msa0117140:three_prime_UTR |
| AATTGTGAAGATAATTAGGA+TGG | 0.628754 | 1_3:-37374594 | None:intergenic |
| CAACAGATACAACAACATGC+AGG | 0.634469 | 1_3:+37375176 | Msa0117140:CDS |
| GGACCAATAAGAATCTGAGA+AGG | 0.643048 | 1_3:-37375117 | None:intergenic |
| GATAAGACTCAAAAGTGGAA+GGG | 0.652302 | 1_3:-37374752 | None:intergenic |
| ACAGGACAAGAGAATTGTGT+AGG | 0.653674 | 1_3:-37375138 | None:intergenic |
| AGAACTCATGAGAAGAACTG+TGG | 0.653790 | 1_3:+37377641 | Msa0117140:CDS |
| CCTGGTGAACAACAATAGCA+AGG | 0.660333 | 1_3:-37377476 | None:intergenic |
| ACCAATAGATCACTTAACAA+GGG | 0.699637 | 1_3:+37375075 | Msa0117140:CDS |
| TATCCTCAGATGCATATGTG+GGG | 0.710095 | 1_3:+37377383 | Msa0117140:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAGAAAAAATTATCTTTT+TGG | + | chr1_3:37375770-37375789 | Msa0117140:intron | 10.0% |
| !! | TTAATATATTATCATTTACT+TGG | - | chr1_3:37375969-37375988 | None:intergenic | 10.0% |
| !! | AAACAAAAACTATTAATTAT+TGG | - | chr1_3:37375995-37376014 | None:intergenic | 10.0% |
| !! | TATAAATTACATTAAATTTG+AGG | + | chr1_3:37376219-37376238 | Msa0117140:intron | 10.0% |
| !!! | TTATAAATTTCATTAATTTG+AGG | + | chr1_3:37376272-37376291 | Msa0117140:intron | 10.0% |
| !! | ATTATTTACAATTAAATAGA+AGG | - | chr1_3:37376950-37376969 | None:intergenic | 10.0% |
| !! | TTCTATTTAATTGTAAATAA+TGG | + | chr1_3:37376949-37376968 | Msa0117140:intron | 10.0% |
| !!! | AAATAATGGTTTATATATTT+TGG | + | chr1_3:37376963-37376982 | Msa0117140:intron | 10.0% |
| !! | AAATAGAAAAAGAAAAGAAA+AGG | - | chr1_3:37374453-37374472 | None:intergenic | 15.0% |
| !! | TTGGATTATTATTATTGAAT+TGG | - | chr1_3:37374531-37374550 | None:intergenic | 15.0% |
| !! | GACACTAAATTAATATTATA+AGG | - | chr1_3:37375282-37375301 | None:intergenic | 15.0% |
| !!! | TGATTTTCTTAAATTATTAG+CGG | + | chr1_3:37375420-37375439 | Msa0117140:intron | 15.0% |
| !! | TTTAATTAATTACACCTATA+TGG | - | chr1_3:37375708-37375727 | None:intergenic | 15.0% |
| !!! | ATTATAAATTAACTTGAGAA+AGG | + | chr1_3:37376667-37376686 | Msa0117140:intron | 15.0% |
| !!! | TTATAAATTAACTTGAGAAA+GGG | + | chr1_3:37376668-37376687 | Msa0117140:intron | 15.0% |
| !!! | TTTTATGTGGATTAATAATT+AGG | - | chr1_3:37377115-37377134 | None:intergenic | 15.0% |
| !!! | ATAATAACTTCTTCTTTTTA+AGG | + | chr1_3:37377329-37377348 | Msa0117140:intron | 15.0% |
| !! | ATAACATAATATAATTCACT+TGG | - | chr1_3:37377872-37377891 | None:intergenic | 15.0% |
| !! | AAAAAGAAAAGAAAAGGAAA+AGG | - | chr1_3:37374447-37374466 | None:intergenic | 20.0% |
| !!! | TATTTTCTTTTTCTCATCAA+TGG | + | chr1_3:37374468-37374487 | Msa0117140:exon | 20.0% |
| !! | ATTATTGAATTGGAAGAAAT+TGG | - | chr1_3:37374521-37374540 | None:intergenic | 20.0% |
| !! | ATGAAATTGTGAAGATAATT+AGG | - | chr1_3:37374601-37374620 | None:intergenic | 20.0% |
| !!! | TGTTTTCAAAAGTATGAATT+TGG | - | chr1_3:37375524-37375543 | None:intergenic | 20.0% |
| !!! | AAATTGAATTTCTTGAGTTT+TGG | + | chr1_3:37375543-37375562 | Msa0117140:intron | 20.0% |
| !! | AAGAAAAATTTCAAAAGAAG+AGG | - | chr1_3:37375627-37375646 | None:intergenic | 20.0% |
| !!! | GTATTTTTTGCATGATAAAA+TGG | + | chr1_3:37375737-37375756 | Msa0117140:intron | 20.0% |
| !! | ATATGAATTCAGTCTAAAAA+GGG | - | chr1_3:37376028-37376047 | None:intergenic | 20.0% |
| !! | TATATGAATTCAGTCTAAAA+AGG | - | chr1_3:37376029-37376048 | None:intergenic | 20.0% |
| !! | CTATATATGATACAATTAGA+AGG | - | chr1_3:37376144-37376163 | None:intergenic | 20.0% |
| !! | TGTAATGATTATTTAACTCA+AGG | - | chr1_3:37376334-37376353 | None:intergenic | 20.0% |
| !!! | TTTTTAACAAAAAATGGTGA+AGG | + | chr1_3:37376636-37376655 | Msa0117140:intron | 20.0% |
| !!! | TTTTAACAAAAAATGGTGAA+GGG | + | chr1_3:37376637-37376656 | Msa0117140:intron | 20.0% |
| !!! | CATATCATTTTTGTTTTATG+TGG | - | chr1_3:37377128-37377147 | None:intergenic | 20.0% |
| !! | TGAAAAAACTCAAAAAATGT+TGG | - | chr1_3:37377238-37377257 | None:intergenic | 20.0% |
| ! | AATTGTGAAGATAATTAGGA+TGG | - | chr1_3:37374597-37374616 | None:intergenic | 25.0% |
| !!! | CATATTCTTCCTTTTTTGTT+GGG | - | chr1_3:37374777-37374796 | None:intergenic | 25.0% |
| !!! | TCATATTCTTCCTTTTTTGT+TGG | - | chr1_3:37374778-37374797 | None:intergenic | 25.0% |
| ! | TAGTCATAAAGTAGAAGAAA+AGG | + | chr1_3:37374882-37374901 | Msa0117140:CDS | 25.0% |
| ! | TAACATCTTGTAAATGATCT+TGG | - | chr1_3:37375017-37375036 | None:intergenic | 25.0% |
| ! | GAAGAAAAATAGAAAGTGAA+AGG | - | chr1_3:37375650-37375669 | None:intergenic | 25.0% |
| !! | TCAGATTCTATATATCCTTT+TGG | + | chr1_3:37375815-37375834 | Msa0117140:intron | 25.0% |
| !! | TTAATAGAACTGAATTTTGC+AGG | + | chr1_3:37375927-37375946 | Msa0117140:intron | 25.0% |
| !! | TAATAGAACTGAATTTTGCA+GGG | + | chr1_3:37375928-37375947 | Msa0117140:intron | 25.0% |
| ! | AAGTTCCACATATACATTAA+TGG | + | chr1_3:37376063-37376082 | Msa0117140:intron | 25.0% |
| ! | TATGTCCATTAATGTATATG+TGG | - | chr1_3:37376071-37376090 | None:intergenic | 25.0% |
| ! | CATATAAATGTCATGTCAAA+AGG | + | chr1_3:37376820-37376839 | Msa0117140:intron | 25.0% |
| ! | TGCATTCCTAATTAAAATCT+TGG | + | chr1_3:37377146-37377165 | Msa0117140:intron | 25.0% |
| ! | ATTCCTAATTAAAATCTTGG+CGG | + | chr1_3:37377149-37377168 | Msa0117140:intron | 25.0% |
| ! | GTAATAATCATCATTGATGA+AGG | - | chr1_3:37377176-37377195 | None:intergenic | 25.0% |
| !!! | AGTGTTCTGAAATCTTTTAA+TGG | - | chr1_3:37377536-37377555 | None:intergenic | 25.0% |
| ! | CACTTCAAACACATTATAAA+AGG | + | chr1_3:37377552-37377571 | Msa0117140:CDS | 25.0% |
| ! | ACACATTATAAAAGGAAACA+TGG | + | chr1_3:37377560-37377579 | Msa0117140:CDS | 25.0% |
| ! | CACATTATAAAAGGAAACAT+GGG | + | chr1_3:37377561-37377580 | Msa0117140:CDS | 25.0% |
| !! | AAAGATCATATAAGAGCTTT+TGG | + | chr1_3:37377716-37377735 | Msa0117140:CDS | 25.0% |
| !! | AAGATCATATAAGAGCTTTT+GGG | + | chr1_3:37377717-37377736 | Msa0117140:CDS | 25.0% |
| ! | AATTTATTAACCGACTATGA+TGG | + | chr1_3:37377902-37377921 | Msa0117140:three_prime_UTR | 25.0% |
| ! | TTATATATCTCCATCATAGT+CGG | - | chr1_3:37377915-37377934 | None:intergenic | 25.0% |
| ATGAGAAGAAATTGGAGTAA+GGG | - | chr1_3:37374498-37374517 | None:intergenic | 30.0% | |
| GAAATTGGATGAGAAGAAAT+TGG | - | chr1_3:37374506-37374525 | None:intergenic | 30.0% | |
| ATAATTAGGATGGTTGTGAT+GGG | - | chr1_3:37374587-37374606 | None:intergenic | 30.0% | |
| TGTTATTGTTGAAAGTTGTG+TGG | - | chr1_3:37374627-37374646 | None:intergenic | 30.0% | |
| AAAGGAAGAATATGAAGATG+AGG | + | chr1_3:37374783-37374802 | Msa0117140:CDS | 30.0% | |
| TTAAAGTGCAAGATTGATGA+TGG | - | chr1_3:37374846-37374865 | None:intergenic | 30.0% | |
| TCATCAATCTTGCACTTTAA+TGG | + | chr1_3:37374846-37374865 | Msa0117140:CDS | 30.0% | |
| TACCAATAGATCACTTAACA+AGG | + | chr1_3:37375074-37375093 | Msa0117140:CDS | 30.0% | |
| ACCAATAGATCACTTAACAA+GGG | + | chr1_3:37375075-37375094 | Msa0117140:CDS | 30.0% | |
| !!! | GTGTTAAGGTTTTGAAAAGA+AGG | - | chr1_3:37375239-37375258 | None:intergenic | 30.0% |
| ATAAGGAGAAGAAGATCTAT+AGG | - | chr1_3:37375265-37375284 | None:intergenic | 30.0% | |
| TTTAGTGTAATCATATGCGT+CGG | - | chr1_3:37375395-37375414 | None:intergenic | 30.0% | |
| TCTTAAATTATTAGCGGTGT+CGG | + | chr1_3:37375426-37375445 | Msa0117140:intron | 30.0% | |
| ACTTGAATGAACCACATATA+CGG | - | chr1_3:37375480-37375499 | None:intergenic | 30.0% | |
| GTATGAATTTGGAAGAAAAG+TGG | - | chr1_3:37375513-37375532 | None:intergenic | 30.0% | |
| TCTTCGTTCTTTAACCATAT+AGG | + | chr1_3:37375691-37375710 | Msa0117140:intron | 30.0% | |
| GAGTTGTTTAATCAACCAAA+AGG | - | chr1_3:37375833-37375852 | None:intergenic | 30.0% | |
| TTTGGTTGATTAAACAACTC+AGG | + | chr1_3:37375833-37375852 | Msa0117140:intron | 30.0% | |
| AGACTTCAATGTTGTACTAA+AGG | - | chr1_3:37375873-37375892 | None:intergenic | 30.0% | |
| AATGTATATGTGGAACTTTC+AGG | - | chr1_3:37376061-37376080 | None:intergenic | 30.0% | |
| ! | TCATTAATTTGAGGTGCAAA+AGG | + | chr1_3:37376281-37376300 | Msa0117140:intron | 30.0% |
| TTACAACTAAGTGATCTCTA+TGG | + | chr1_3:37376486-37376505 | Msa0117140:intron | 30.0% | |
| CATTTCACAATCAACTCAAT+GGG | - | chr1_3:37376605-37376624 | None:intergenic | 30.0% | |
| TCATTTCACAATCAACTCAA+TGG | - | chr1_3:37376606-37376625 | None:intergenic | 30.0% | |
| AGGGAAATCATTATTAACAG+CGG | + | chr1_3:37376687-37376706 | Msa0117140:intron | 30.0% | |
| ATAACAATGTCATGTCTTCT+AGG | + | chr1_3:37376849-37376868 | Msa0117140:intron | 30.0% | |
| ACAATTAAATAGAAGGCAAG+CGG | - | chr1_3:37376943-37376962 | None:intergenic | 30.0% | |
| ! | AGTTGCAAAATCAAGTTGTT+AGG | + | chr1_3:37377054-37377073 | Msa0117140:intron | 30.0% |
| ! | GTTGCAAAATCAAGTTGTTA+GGG | + | chr1_3:37377055-37377074 | Msa0117140:intron | 30.0% |
| TTCCTAATTAAAATCTTGGC+GGG | + | chr1_3:37377150-37377169 | Msa0117140:intron | 30.0% | |
| AAAACTCAAAAAATGTTGGC+TGG | - | chr1_3:37377234-37377253 | None:intergenic | 30.0% | |
| ! | CCACATTTTCTACACATAAA+AGG | - | chr1_3:37377593-37377612 | None:intergenic | 30.0% |
| ! | CCTTTTATGTGTAGAAAATG+TGG | + | chr1_3:37377590-37377609 | Msa0117140:CDS | 30.0% |
| TATGTGTAGAAAATGTGGTA+AGG | + | chr1_3:37377595-37377614 | Msa0117140:CDS | 30.0% | |
| !!! | AATTGATGGTTTTGAAGAAG+AGG | + | chr1_3:37377760-37377779 | Msa0117140:CDS | 30.0% |
| ATGGAGATATATAATAGCCA+TGG | + | chr1_3:37377921-37377940 | Msa0117140:three_prime_UTR | 30.0% | |
| ! | AGTTCTCAAATTTGAAACCA+TGG | - | chr1_3:37377941-37377960 | None:intergenic | 30.0% |
| ! | AAGGAAAAGGTATAGTGTTG+AGG | - | chr1_3:37374434-37374453 | None:intergenic | 35.0% |
| GATGAGAAGAAATTGGAGTA+AGG | - | chr1_3:37374499-37374518 | None:intergenic | 35.0% | |
| ATGAAGGGTTTGAAGAAGAA+GGG | - | chr1_3:37374564-37374583 | None:intergenic | 35.0% | |
| GATAATTAGGATGGTTGTGA+TGG | - | chr1_3:37374588-37374607 | None:intergenic | 35.0% | |
| !! | ATGATGATGGTAGTGGAAAA+AGG | - | chr1_3:37374653-37374672 | None:intergenic | 35.0% |
| ATGCAGTTGTAGTTTGAAGA+TGG | - | chr1_3:37374684-37374703 | None:intergenic | 35.0% | |
| GATAAGACTCAAAAGTGGAA+GGG | - | chr1_3:37374755-37374774 | None:intergenic | 35.0% | |
| ! | GAGTCTTATCCCAACAAAAA+AGG | + | chr1_3:37374765-37374784 | Msa0117140:CDS | 35.0% |
| !! | ATTGATGATGGTGATGATGA+TGG | - | chr1_3:37374834-37374853 | None:intergenic | 35.0% |
| ! | ATCTTGCACTTTAATGGATG+TGG | + | chr1_3:37374852-37374871 | Msa0117140:CDS | 35.0% |
| GAAGAAAAGGAAGATCATGA+AGG | + | chr1_3:37374895-37374914 | Msa0117140:CDS | 35.0% | |
| TGACTGTTGCACTTCATATA+GGG | + | chr1_3:37374920-37374939 | Msa0117140:CDS | 35.0% | |
| TTGCAATCTCAGAAGAACTA+GGG | - | chr1_3:37374954-37374973 | None:intergenic | 35.0% | |
| ! | TATTAGCGACGATTCCTTTT+CGG | + | chr1_3:37375038-37375057 | Msa0117140:CDS | 35.0% |
| ACCCTTGTTAAGTGATCTAT+TGG | - | chr1_3:37375079-37375098 | None:intergenic | 35.0% | |
| TAAGAATCTGAGAAGGAGTA+GGG | - | chr1_3:37375113-37375132 | None:intergenic | 35.0% | |
| ATAAGAATCTGAGAAGGAGT+AGG | - | chr1_3:37375114-37375133 | None:intergenic | 35.0% | |
| ACTCCTTCTCAGATTCTTAT+TGG | + | chr1_3:37375114-37375133 | Msa0117140:CDS | 35.0% | |
| CATGTTGTTGTATCTGTTGA+AGG | - | chr1_3:37375175-37375194 | None:intergenic | 35.0% | |
| !! | AGATCTATAGGTTGGTGTTA+AGG | - | chr1_3:37375253-37375272 | None:intergenic | 35.0% |
| GTAGCTCAATGGTATGAATT+TGG | - | chr1_3:37375304-37375323 | None:intergenic | 35.0% | |
| AAAATGACCTTGGGAAAAGA+GGG | - | chr1_3:37375672-37375691 | None:intergenic | 35.0% | |
| AGAACGAAGAAAATGACCTT+GGG | - | chr1_3:37375681-37375700 | None:intergenic | 35.0% | |
| AAGAACGAAGAAAATGACCT+TGG | - | chr1_3:37375682-37375701 | None:intergenic | 35.0% | |
| AGTTGCATGGCAAAATACAT+AGG | - | chr1_3:37375905-37375924 | None:intergenic | 35.0% | |
| AGTTCTATTAAGCAGTTGCA+TGG | - | chr1_3:37375918-37375937 | None:intergenic | 35.0% | |
| ! | ATATGTGGAACTTTCAGGTA+TGG | - | chr1_3:37376056-37376075 | None:intergenic | 35.0% |
| TCAAGAGGGTTCAATATCTT+TGG | + | chr1_3:37376421-37376440 | Msa0117140:intron | 35.0% | |
| CTCATCAACCTAATGATAGT+GGG | - | chr1_3:37376461-37376480 | None:intergenic | 35.0% | |
| ACTCATCAACCTAATGATAG+TGG | - | chr1_3:37376462-37376481 | None:intergenic | 35.0% | |
| TCTCTATGGAAATAGACAAG+AGG | + | chr1_3:37376500-37376519 | Msa0117140:intron | 35.0% | |
| CTCTATGGAAATAGACAAGA+GGG | + | chr1_3:37376501-37376520 | Msa0117140:intron | 35.0% | |
| !!! | ATTGGTTTTGTCATCCGAAA+AGG | + | chr1_3:37376896-37376915 | Msa0117140:intron | 35.0% |
| CAATTAAATAGAAGGCAAGC+GGG | - | chr1_3:37376942-37376961 | None:intergenic | 35.0% | |
| ! | ATTTTGCAACTTCAAGTGAG+GGG | - | chr1_3:37377045-37377064 | None:intergenic | 35.0% |
| ! | GATTTTGCAACTTCAAGTGA+GGG | - | chr1_3:37377046-37377065 | None:intergenic | 35.0% |
| ! | TGATTTTGCAACTTCAAGTG+AGG | - | chr1_3:37377047-37377066 | None:intergenic | 35.0% |
| !! | TTGTAAGAGTTTTGTCCATG+AGG | - | chr1_3:37377092-37377111 | None:intergenic | 35.0% |
| TTATCCTCAGATGCATATGT+GGG | + | chr1_3:37377382-37377401 | Msa0117140:intron | 35.0% | |
| CATGGATCACAATACAGAAA+AGG | + | chr1_3:37377407-37377426 | Msa0117140:CDS | 35.0% | |
| !! | CTTTTAATGGCTTTGCTCTT+GGG | - | chr1_3:37377523-37377542 | None:intergenic | 35.0% |
| !! | TCTTTTAATGGCTTTGCTCT+TGG | - | chr1_3:37377524-37377543 | None:intergenic | 35.0% |
| ! | AAGCTTTGGTATTGTCTTTG+TGG | + | chr1_3:37377665-37377684 | Msa0117140:CDS | 35.0% |
| ! | GTTCCGATTTTAAGCATAAG+CGG | + | chr1_3:37377687-37377706 | Msa0117140:CDS | 35.0% |
| AACAGTTCTCAGGCAATTTG+TGG | - | chr1_3:37374401-37374420 | None:intergenic | 40.0% | |
| ! | TATAGTGTTGAGGTGAGAGT+GGG | - | chr1_3:37374424-37374443 | None:intergenic | 40.0% |
| ! | GAAGAAGGGTAATGGTTTGT+TGG | - | chr1_3:37374550-37374569 | None:intergenic | 40.0% |
| GGTTTGAAGAAGAAGGGTAA+TGG | - | chr1_3:37374558-37374577 | None:intergenic | 40.0% | |
| GATGAAGGGTTTGAAGAAGA+AGG | - | chr1_3:37374565-37374584 | None:intergenic | 40.0% | |
| !! | GATGATGATGATGATGGTAG+TGG | - | chr1_3:37374660-37374679 | None:intergenic | 40.0% |
| ! | GATGGTGATGATGATGATGA+TGG | - | chr1_3:37374666-37374685 | None:intergenic | 40.0% |
| !! | TCTTTTAAAGGAGGGGAAGA+TGG | - | chr1_3:37374730-37374749 | None:intergenic | 40.0% |
| !! | AAGGGCTTCTTTTAAAGGAG+GGG | - | chr1_3:37374737-37374756 | None:intergenic | 40.0% |
| !! | GAAGGGCTTCTTTTAAAGGA+GGG | - | chr1_3:37374738-37374757 | None:intergenic | 40.0% |
| ! | AGTGGAAGGGCTTCTTTTAA+AGG | - | chr1_3:37374742-37374761 | None:intergenic | 40.0% |
| GGATAAGACTCAAAAGTGGA+AGG | - | chr1_3:37374756-37374775 | None:intergenic | 40.0% | |
| GTTGGGATAAGACTCAAAAG+TGG | - | chr1_3:37374760-37374779 | None:intergenic | 40.0% | |
| GTGACTGTTGCACTTCATAT+AGG | + | chr1_3:37374919-37374938 | Msa0117140:CDS | 40.0% | |
| GTTGCAATCTCAGAAGAACT+AGG | - | chr1_3:37374955-37374974 | None:intergenic | 40.0% | |
| ACTCAAAAATCCAGCCGAAA+AGG | - | chr1_3:37375055-37375074 | None:intergenic | 40.0% | |
| CACTTAACAAGGGTCAGTAT+TGG | + | chr1_3:37375085-37375104 | Msa0117140:CDS | 40.0% | |
| GGACCAATAAGAATCTGAGA+AGG | - | chr1_3:37375120-37375139 | None:intergenic | 40.0% | |
| ACAGGACAAGAGAATTGTGT+AGG | - | chr1_3:37375141-37375160 | None:intergenic | 40.0% | |
| ! | TTGAAGGTTTTGCAGCAAAC+AGG | - | chr1_3:37375159-37375178 | None:intergenic | 40.0% |
| CAACAGATACAACAACATGC+AGG | + | chr1_3:37375176-37375195 | Msa0117140:CDS | 40.0% | |
| GGAGAAGAAGATCTATAGGT+TGG | - | chr1_3:37375261-37375280 | None:intergenic | 40.0% | |
| ! | TTTGCAAAGGTGTAGCTCAA+TGG | - | chr1_3:37375315-37375334 | None:intergenic | 40.0% |
| ! | ATAGAAGGAGGGTTTTGCAA+AGG | - | chr1_3:37375328-37375347 | None:intergenic | 40.0% |
| ! | TTTTCTTCCCTCTTTTCCCA+AGG | + | chr1_3:37375662-37375681 | Msa0117140:intron | 40.0% |
| GAAAATGACCTTGGGAAAAG+AGG | - | chr1_3:37375673-37375692 | None:intergenic | 40.0% | |
| TCTACGCAGCAATTGTTCTT+TGG | - | chr1_3:37376384-37376403 | None:intergenic | 40.0% | |
| TGACAATGAGACACTTCAAG+AGG | + | chr1_3:37376406-37376425 | Msa0117140:intron | 40.0% | |
| GACAATGAGACACTTCAAGA+GGG | + | chr1_3:37376407-37376426 | Msa0117140:intron | 40.0% | |
| !! | ATGATAGTGGGTTTGAGACT+TGG | - | chr1_3:37376449-37376468 | None:intergenic | 40.0% |
| GTCTCAAACCCACTATCATT+AGG | + | chr1_3:37376450-37376469 | Msa0117140:intron | 40.0% | |
| AATGTTGTGTTCACGAGGAT+TGG | + | chr1_3:37376878-37376897 | Msa0117140:intron | 40.0% | |
| GAGGGGTTCAAATTTCATGT+AGG | - | chr1_3:37377028-37377047 | None:intergenic | 40.0% | |
| CTTATCCTCAGATGCATATG+TGG | + | chr1_3:37377381-37377400 | Msa0117140:intron | 40.0% | |
| TATCCTCAGATGCATATGTG+GGG | + | chr1_3:37377383-37377402 | Msa0117140:intron | 40.0% | |
| AAAGGACCAGAATCTCTAAG+AGG | + | chr1_3:37377425-37377444 | Msa0117140:CDS | 40.0% | |
| TGTGTACCTCTTAGAGATTC+TGG | - | chr1_3:37377434-37377453 | None:intergenic | 40.0% | |
| !!! | CTTTTGCTGTTAGAGGAGAT+TGG | + | chr1_3:37377618-37377637 | Msa0117140:CDS | 40.0% |
| AGAACTCATGAGAAGAACTG+TGG | + | chr1_3:37377641-37377660 | Msa0117140:CDS | 40.0% | |
| AGAAGAACTGTGGAAAGCTT+TGG | + | chr1_3:37377651-37377670 | Msa0117140:CDS | 40.0% | |
| CGACCGCTTATGCTTAAAAT+CGG | - | chr1_3:37377693-37377712 | None:intergenic | 40.0% | |
| !! | CATATAAGAGCTTTTGGGAG+TGG | + | chr1_3:37377722-37377741 | Msa0117140:CDS | 40.0% |
| ! | CATGCTGCTTATGGAATTGA+TGG | + | chr1_3:37377746-37377765 | Msa0117140:CDS | 40.0% |
| TCTTGTTCAACTTCAGAAGC+AGG | - | chr1_3:37377791-37377810 | None:intergenic | 40.0% | |
| ! | GTATAGTGTTGAGGTGAGAG+TGG | - | chr1_3:37374425-37374444 | None:intergenic | 45.0% |
| ! | GATGGTTGTGATGGGATGAA+GGG | - | chr1_3:37374579-37374598 | None:intergenic | 45.0% |
| GGAAGATGGTGAAGAAGAAG+AGG | - | chr1_3:37374716-37374735 | None:intergenic | 45.0% | |
| !! | GGAAGGGCTTCTTTTAAAGG+AGG | - | chr1_3:37374739-37374758 | None:intergenic | 45.0% |
| ATCTCAGAAGAACTAGGGCT+TGG | - | chr1_3:37374949-37374968 | None:intergenic | 45.0% | |
| ATACGGACACAGACACAGTA+TGG | - | chr1_3:37375463-37375482 | None:intergenic | 45.0% | |
| TGTGTCTGTGTCCGTATATG+TGG | + | chr1_3:37375466-37375485 | Msa0117140:intron | 45.0% | |
| ! | GTGGAACTTTCAGGTATGGA+AGG | - | chr1_3:37376052-37376071 | None:intergenic | 45.0% |
| CCTCGTGAACACAACATTCA+TGG | - | chr1_3:37376876-37376895 | None:intergenic | 45.0% | |
| CCATGAATGTTGTGTTCACG+AGG | + | chr1_3:37376873-37376892 | Msa0117140:intron | 45.0% | |
| AGGGATGAATTGACACCTCA+TGG | + | chr1_3:37377074-37377093 | Msa0117140:intron | 45.0% | |
| !!! | GGCCCGCCAAGATTTTAATT+AGG | - | chr1_3:37377155-37377174 | None:intergenic | 45.0% |
| ! | CTAAGAGGTACACAACCAAC+AGG | + | chr1_3:37377440-37377459 | Msa0117140:CDS | 45.0% |
| CACAACCAACAGGTATGCTA+AGG | + | chr1_3:37377450-37377469 | Msa0117140:CDS | 45.0% | |
| CCTGGTGAACAACAATAGCA+AGG | - | chr1_3:37377479-37377498 | None:intergenic | 45.0% | |
| !! | CCTTGCTATTGTTGTTCACC+AGG | + | chr1_3:37377476-37377495 | Msa0117140:CDS | 45.0% |
| ! | ATTGTTGTTCACCAGGTTGC+AGG | + | chr1_3:37377483-37377502 | Msa0117140:CDS | 45.0% |
| TCAATGTTGTTCCTGCAACC+TGG | - | chr1_3:37377497-37377516 | None:intergenic | 45.0% | |
| !!! | GGTAAGGCTTTTGCTGTTAG+AGG | + | chr1_3:37377611-37377630 | Msa0117140:CDS | 45.0% |
| !!! | ATAATTTTTTTAACAAAAAA+TGG | + | chr1_3:37376630-37376649 | Msa0117140:intron | 5.0% |
| TGAGAGTGGGAACAGTTCTC+AGG | - | chr1_3:37374411-37374430 | None:intergenic | 50.0% | |
| ! | GGATGGTTGTGATGGGATGA+AGG | - | chr1_3:37374580-37374599 | None:intergenic | 50.0% |
| AACCCTCCTTCTATGAAGCG+CGG | + | chr1_3:37375334-37375353 | Msa0117140:intron | 50.0% | |
| ! | GCTGCGTCGTTAGACCTTTT+CGG | - | chr1_3:37376913-37376932 | None:intergenic | 50.0% |
| TGTCCCCACATATGCATCTG+AGG | - | chr1_3:37377389-37377408 | None:intergenic | 50.0% | |
| CAGATGCATATGTGGGGACA+TGG | + | chr1_3:37377389-37377408 | Msa0117140:intron | 50.0% | |
| GGAAGCCTTAGCATACCTGT+TGG | - | chr1_3:37377458-37377477 | None:intergenic | 50.0% | |
| ! | AGCGACGATTCCTTTTCGGC+TGG | + | chr1_3:37375042-37375061 | Msa0117140:CDS | 55.0% |
| GTCCGCGCTTCATAGAAGGA+GGG | - | chr1_3:37375339-37375358 | None:intergenic | 55.0% | |
| TGTCCGCGCTTCATAGAAGG+AGG | - | chr1_3:37375340-37375359 | None:intergenic | 55.0% | |
| GAGTGTCCGCGCTTCATAGA+AGG | - | chr1_3:37375343-37375362 | None:intergenic | 55.0% | |
| ! | GGGAGTGGTCATGCTGCTTA+TGG | + | chr1_3:37377737-37377756 | Msa0117140:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 37374391 | 37377964 | 37374391 | ID=Msa0117140;Name=Msa0117140 |
| chr1_3 | mRNA | 37374391 | 37377964 | 37374391 | ID=Msa0117140-mRNA-1;Parent=Msa0117140;Name=Msa0117140-mRNA-1;_AED=0.00;_eAED=0.00;_QI=96|1|1|1|1|1|2|129|384 |
| chr1_3 | exon | 37374391 | 37375197 | 37374391 | ID=Msa0117140-mRNA-1:exon:11876;Parent=Msa0117140-mRNA-1 |
| chr1_3 | exon | 37377392 | 37377964 | 37377392 | ID=Msa0117140-mRNA-1:exon:11877;Parent=Msa0117140-mRNA-1 |
| chr1_3 | five_prime_UTR | 37374391 | 37374486 | 37374391 | ID=Msa0117140-mRNA-1:five_prime_utr;Parent=Msa0117140-mRNA-1 |
| chr1_3 | CDS | 37374487 | 37375197 | 37374487 | ID=Msa0117140-mRNA-1:cds;Parent=Msa0117140-mRNA-1 |
| chr1_3 | CDS | 37377392 | 37377835 | 37377392 | ID=Msa0117140-mRNA-1:cds;Parent=Msa0117140-mRNA-1 |
| chr1_3 | three_prime_UTR | 37377836 | 37377964 | 37377836 | ID=Msa0117140-mRNA-1:three_prime_utr;Parent=Msa0117140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
