AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1392900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1392900 MtrunA17_Chr2g0325651 86.563 387 39 1 1 374 2 388 0.0 636
Msa1392900 MtrunA17_Chr2g0325651 42.294 279 128 9 227 502 140 388 2.73e-32 129
Msa1392900 MtrunA17_Chr2g0325651 39.583 288 124 7 328 614 150 388 3.99e-29 119
Msa1392900 MtrunA17_Chr2g0325651 38.245 319 138 11 244 558 125 388 7.88e-26 110
Msa1392900 MtrunA17_Chr2g0325651 37.662 231 92 2 441 619 138 368 6.14e-23 101
Msa1392900 MtrunA17_Chr5g0434741 75.082 305 74 2 1 304 1 304 1.70e-146 426
Msa1392900 MtrunA17_Chr5g0434741 37.500 184 102 4 443 618 126 304 9.02e-14 72.4
Msa1392900 MtrunA17_Chr5g0434741 36.232 207 92 5 328 533 136 303 1.26e-13 72.0
Msa1392900 MtrunA17_Chr2g0325261 72.575 299 81 1 1 299 2 299 1.60e-139 408
Msa1392900 MtrunA17_Chr2g0325261 57.143 84 36 0 481 564 223 306 6.60e-16 79.0
Msa1392900 MtrunA17_Chr2g0325261 39.459 185 99 4 443 619 126 305 1.01e-13 72.4
Msa1392900 MtrunA17_Chr2g0325261 32.692 260 97 8 220 452 98 306 4.11e-12 67.8
Msa1392900 MtrunA17_Chr2g0325341 72.575 299 81 1 1 299 2 299 1.60e-139 408
Msa1392900 MtrunA17_Chr2g0325341 57.143 84 36 0 481 564 223 306 6.60e-16 79.0
Msa1392900 MtrunA17_Chr2g0325341 39.459 185 99 4 443 619 126 305 1.01e-13 72.4
Msa1392900 MtrunA17_Chr2g0325341 32.692 260 97 8 220 452 98 306 4.11e-12 67.8
Msa1392900 MtrunA17_Chr2g0325361 46.988 664 238 11 52 619 42 687 2.33e-135 422
Msa1392900 MtrunA17_Chr2g0325361 52.564 468 143 6 222 619 334 792 1.62e-104 340
Msa1392900 MtrunA17_Chr2g0325361 49.565 345 141 4 222 549 478 806 4.14e-58 211
Msa1392900 MtrunA17_Chr2g0325361 39.752 322 179 5 306 622 151 462 1.89e-34 140
Msa1392900 MtrunA17_Chr2g0325861 44.886 704 226 12 1 619 2 628 1.98e-132 409
Msa1392900 MtrunA17_Chr2g0325861 43.726 263 133 5 209 467 407 658 2.18e-37 149
Msa1392900 MtrunA17_Chr2g0325861 34.465 383 198 7 253 621 135 478 3.78e-31 129
Msa1392900 MtrunA17_Chr2g0325861 36.723 177 104 2 222 390 505 681 4.55e-16 82.0
Msa1392900 MtrunA17_Chr2g0325761 41.654 665 279 10 1 617 1 604 6.62e-112 350
Msa1392900 MtrunA17_Chr2g0325761 39.857 419 204 8 237 620 174 579 1.34e-48 180
Msa1392900 MtrunA17_Chr2g0325761 41.514 383 184 10 248 619 155 508 1.12e-44 169
Msa1392900 MtrunA17_Chr2g0325691 41.643 694 321 13 1 619 1 685 3.93e-110 347
Msa1392900 MtrunA17_Chr2g0325691 45.556 360 160 4 222 558 376 722 6.31e-54 196
Msa1392900 MtrunA17_Chr2g0325691 33.494 415 169 10 124 439 323 729 6.00e-22 100
Msa1392900 MtrunA17_Chr2g0325281 42.994 628 279 16 14 612 5 582 2.25e-102 323
Msa1392900 MtrunA17_Chr2g0325281 43.350 203 94 1 437 618 246 448 2.26e-28 120
Msa1392900 MtrunA17_Chr2g0325281 46.528 144 73 1 478 621 228 367 1.72e-21 99.0
Msa1392900 MtrunA17_Chr2g0325281 42.667 150 76 2 216 362 444 586 1.04e-15 80.5
Msa1392900 MtrunA17_Chr2g0325231 39.148 728 291 15 1 623 2 682 3.56e-102 330
Msa1392900 MtrunA17_Chr2g0325231 35.398 339 116 8 222 459 374 710 2.28e-28 121
Msa1392900 MtrunA17_Chr2g0325661 38.344 652 228 11 1 534 1 596 7.69e-97 316
Msa1392900 MtrunA17_Chr2g0325661 38.866 476 236 12 186 619 121 583 2.04e-50 187
Msa1392900 MtrunA17_Chr2g0325321 41.704 669 233 15 14 614 5 584 4.64e-96 311
Msa1392900 MtrunA17_Chr2g0325321 31.198 484 191 14 232 619 82 519 4.03e-25 110
Msa1392900 MtrunA17_Chr2g0325321 34.202 307 127 8 94 388 374 617 1.59e-13 73.9
Msa1392900 MtrunA17_Chr2g0325641 52.478 343 109 7 265 590 2 307 1.05e-77 250
Msa1392900 MtrunA17_Chr2g0325641 54.741 232 96 2 396 619 1 231 7.54e-56 192
Msa1392900 MtrunA17_Chr2g0325641 43.791 306 111 5 319 565 7 310 5.77e-46 165
Msa1392900 MtrunA17_Chr2g0325641 40.076 262 117 3 212 435 47 306 6.68e-33 129
Msa1392900 MtrunA17_Chr2g0325221 37.368 661 251 20 1 567 1 592 4.85e-77 259
Msa1392900 MtrunA17_Chr2g0325221 42.045 264 133 3 369 618 316 573 8.74e-34 137
Msa1392900 MtrunA17_Chr2g0325221 43.885 139 64 1 492 616 311 449 1.77e-16 83.2
Msa1392900 MtrunA17_Chr2g0325721 39.888 534 182 13 1 428 1 501 2.78e-76 251
Msa1392900 MtrunA17_Chr2g0325721 35.190 395 209 10 234 610 136 501 3.94e-31 127
Msa1392900 MtrunA17_Chr6g0471251 41.980 505 195 10 1 438 2 475 3.68e-72 247
Msa1392900 MtrunA17_Chr6g0471251 42.199 282 122 5 346 619 226 474 9.25e-27 115
Msa1392900 MtrunA17_Chr6g0471251 31.378 392 203 11 196 545 130 497 8.87e-19 90.9
Msa1392900 MtrunA17_Chr2g0325711 38.339 566 241 9 42 565 57 556 4.22e-71 245
Msa1392900 MtrunA17_Chr2g0325711 36.313 358 183 8 306 623 178 530 2.28e-33 136
Msa1392900 MtrunA17_Chr5g0434751 54.244 271 88 4 327 561 1 271 7.88e-59 199
Msa1392900 MtrunA17_Chr5g0434751 44.978 229 105 1 410 617 1 229 2.46e-33 129
Msa1392900 MtrunA17_Chr5g0434751 53.571 168 78 0 452 619 1 168 1.04e-31 125
Msa1392900 MtrunA17_Chr5g0434751 42.912 261 126 2 380 619 1 259 9.61e-30 119
Msa1392900 MtrunA17_Chr5g0434751 40.928 237 107 4 220 432 41 268 1.67e-27 112
Msa1392900 MtrunA17_Chr5g0434751 39.700 267 132 3 222 459 1 267 1.43e-25 107
Msa1392900 MtrunA17_Chr2g0325811 35.971 556 280 16 35 565 68 572 1.84e-54 199
Msa1392900 MtrunA17_Chr2g0325811 40.909 242 133 2 391 622 304 545 1.38e-30 127
Msa1392900 MtrunA17_Chr2g0325811 44.167 240 128 2 379 618 322 555 1.09e-29 125
Msa1392900 MtrunA17_Chr2g0325811 32.979 188 95 2 220 383 419 599 1.67e-12 70.9
Msa1392900 MtrunA17_Chr2g0280141 33.010 618 264 12 32 595 48 569 8.76e-52 191
Msa1392900 MtrunA17_Chr2g0280141 37.760 384 223 6 248 619 96 475 2.44e-39 154
Msa1392900 MtrunA17_Chr2g0325351 37.475 491 194 13 1 459 2 411 1.64e-51 189
Msa1392900 MtrunA17_Chr2g0325351 38.225 293 140 8 321 603 154 415 1.73e-24 108
Msa1392900 MtrunA17_Chr2g0325351 39.231 260 128 7 372 619 148 389 3.22e-23 104
Msa1392900 MtrunA17_Chr2g0325351 33.856 319 161 10 248 561 142 415 1.18e-19 93.2
Msa1392900 MtrunA17_Chr7g0235901 41.040 346 153 9 61 391 1 310 9.04e-46 164
Msa1392900 MtrunA17_Chr7g0235901 49.057 265 86 7 372 590 50 311 1.09e-44 161
Msa1392900 MtrunA17_Chr5g0416271 35.903 454 159 13 1 440 1 336 2.64e-45 167
Msa1392900 MtrunA17_Chr5g0416271 52.830 159 75 0 415 573 164 322 2.76e-34 136
Msa1392900 MtrunA17_Chr5g0416271 40.164 244 133 5 372 603 82 324 1.44e-28 119
Msa1392900 MtrunA17_Chr5g0416271 45.000 160 73 3 465 617 145 296 2.41e-21 97.8
Msa1392900 MtrunA17_Chr2g0325781 37.568 370 137 14 1 345 1 301 7.81e-45 161
Msa1392900 MtrunA17_Chr2g0325781 45.930 172 68 4 367 513 131 302 3.71e-23 100
Msa1392900 MtrunA17_Chr2g0333341 35.088 456 176 10 1 345 1 447 3.32e-44 167
Msa1392900 MtrunA17_Chr2g0333341 36.473 414 133 12 44 402 111 449 1.20e-33 136
Msa1392900 MtrunA17_Chr2g0333341 42.424 165 90 2 420 584 290 449 4.51e-19 91.3
Msa1392900 MtrunA17_Chr2g0333341 44.615 130 70 2 483 612 322 449 1.27e-16 83.6
Msa1392900 MtrunA17_Chr2g0333341 34.109 258 141 8 297 542 209 449 1.16e-12 70.9
Msa1392900 MtrunA17_Chr2g0325701 36.771 446 209 12 1 414 1 405 1.26e-42 162
Msa1392900 MtrunA17_Chr2g0325701 34.727 311 168 6 307 615 146 423 6.41e-28 118
Msa1392900 MtrunA17_Chr2g0325701 36.842 247 129 4 397 616 165 411 4.81e-25 109
Msa1392900 MtrunA17_Chr2g0325701 36.224 196 98 4 453 621 151 346 1.27e-11 67.8
Msa1392900 MtrunA17_Chr2g0325621 37.656 401 170 9 12 353 8 387 5.85e-42 161
Msa1392900 MtrunA17_Chr2g0325621 33.138 341 160 7 253 590 112 387 1.91e-17 86.3
Msa1392900 MtrunA17_Chr2g0325621 35.874 223 128 5 410 619 154 374 6.78e-17 84.7
Msa1392900 MtrunA17_Chr2g0325741 45.267 243 102 8 42 275 82 302 1.07e-38 145
Msa1392900 MtrunA17_Chr2g0325611 40.074 272 105 6 139 391 77 309 1.90e-29 123
Msa1392900 MtrunA17_Chr2g0325611 41.748 206 107 4 418 616 122 321 9.01e-24 105
Msa1392900 MtrunA17_Chr2g0325611 34.940 249 120 6 368 590 117 349 3.37e-17 85.5
Msa1392900 MtrunA17_Chr2g0325611 46.575 146 69 2 485 623 144 287 1.42e-16 83.2
Msa1392900 MtrunA17_Chr2g0325611 30.606 330 141 12 50 356 49 313 2.09e-11 67.0
Msa1392900 MtrunA17_Chr2g0325241 41.709 199 113 1 420 615 123 321 7.39e-27 113
Msa1392900 MtrunA17_Chr2g0325241 41.429 210 100 4 378 575 125 323 5.21e-25 108
Msa1392900 MtrunA17_Chr2g0325241 43.017 179 85 2 459 620 120 298 6.88e-25 107
Msa1392900 MtrunA17_Chr2g0325241 36.170 235 107 5 272 493 121 325 2.07e-16 82.0
Msa1392900 MtrunA17_Chr2g0325241 35.169 236 112 5 359 587 120 321 1.68e-15 79.3
Msa1392900 MtrunA17_Chr2g0325241 34.101 217 100 4 216 396 105 314 1.81e-14 75.9
Msa1392900 MtrunA17_Chr2g0325201 42.614 176 79 2 165 339 74 228 1.39e-22 97.1
Msa1392900 MtrunA17_Chr2g0325201 36.316 190 90 5 417 576 40 228 1.15e-13 70.9
Msa1392900 MtrunA17_Chr2g0325751 50.000 116 51 1 504 619 3 111 1.17e-19 86.3
Msa1392900 MtrunA17_Chr2g0325751 46.032 126 61 1 481 606 8 126 1.35e-18 83.2
Msa1392900 MtrunA17_Chr2g0325751 44.800 125 62 1 410 534 7 124 1.32e-17 80.5
Msa1392900 MtrunA17_Chr2g0325751 44.056 143 59 2 420 562 3 124 8.91e-17 78.2
Msa1392900 MtrunA17_Chr2g0325751 44.262 122 59 1 375 496 2 114 4.60e-16 75.9
Msa1392900 MtrunA17_Chr2g0325751 40.000 120 65 1 447 566 2 114 1.57e-13 68.6
Msa1392900 MtrunA17_Chr2g0325751 38.235 136 70 2 217 352 2 123 9.33e-11 60.8
Msa1392900 MtrunA17_Chr2g0325211 37.356 174 91 2 419 592 2 157 3.22e-17 80.1
Msa1392900 MtrunA17_Chr2g0325211 40.506 158 90 1 461 618 2 155 5.23e-16 76.6
Msa1392900 MtrunA17_Chr2g0325211 33.333 174 80 4 376 521 3 168 2.98e-11 63.2
Msa1392900 MtrunA17_Chr2g0325791 40.120 167 74 3 417 582 15 156 3.70e-17 83.2
Msa1392900 MtrunA17_Chr2g0325791 41.463 164 86 3 406 560 14 176 1.53e-16 81.3
Msa1392900 MtrunA17_Chr2g0325791 46.032 126 58 1 485 610 41 156 1.32e-14 75.5
Msa1392900 MtrunA17_Chr2g0325791 39.394 165 66 4 222 383 36 169 1.42e-12 69.3
Msa1392900 MtrunA17_Chr2g0325791 38.710 155 79 3 381 520 24 177 4.97e-12 67.4
Msa1392900 MtrunA17_Chr2g0332961 32.482 274 147 7 42 314 2 238 2.12e-16 81.3
Msa1392900 MtrunA17_Chr2g0332961 40.404 198 91 6 357 533 37 228 1.98e-14 75.1
Msa1392900 MtrunA17_Chr2g0325801 53.247 77 33 1 79 152 50 126 6.11e-16 74.7
Msa1392900 MtrunA17_Chr2g0325731 67.241 58 19 0 452 509 1 58 3.96e-15 70.5
Msa1392900 MtrunA17_Chr2g0325731 60.345 58 23 0 522 579 1 58 9.70e-14 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 104 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTCAATATCTTTCTTTA+TGG 0.077701 tig0021537:-53838 None:intergenic
GCACTTTGAGGAACGGTTTA+AGG 0.168819 tig0021537:+54235 Msa1392900:CDS
GCAATTGAAAGGACAATTTA+AGG 0.205523 tig0021537:+55043 Msa1392900:CDS
GATGCAACAAACAAATTAAT+TGG 0.207790 tig0021537:+54023 Msa1392900:CDS
GCCTTCAAGTTGATTCTCTT+TGG 0.237766 tig0021537:-54456 None:intergenic
ATTGAAGGAGCATGAATTAA+AGG 0.284018 tig0021537:+54481 Msa1392900:CDS
TGCATCAAGATCTTTCTCTT+TGG 0.298026 tig0021537:-54006 None:intergenic
TAGATTCCAGTTCCTTCATT+TGG 0.303740 tig0021537:-55181 None:intergenic
TGGACTCAAGCTCCTTCATT+TGG 0.314622 tig0021537:-54436 None:intergenic
TTGACTCAAACTCCTTCATT+TGG 0.322454 tig0021537:-54887 None:intergenic
CTTCGTCTAGTATGTCTAAA+AGG 0.323022 tig0021537:+53700 Msa1392900:CDS
TTAATTCATGCTCCTTCAAT+TGG 0.328441 tig0021537:-54478 None:intergenic
TTGATAGAAAATCCATCATT+TGG 0.338236 tig0021537:-54845 None:intergenic
TCAATACCTGCTGCATCATT+TGG 0.344710 tig0021537:-54394 None:intergenic
AGTCGTTTAAGAAATGTAAA+AGG 0.361598 tig0021537:+53784 Msa1392900:CDS
GGCAATTGAAAGGACAAGTT+AGG 0.363535 tig0021537:+55252 Msa1392900:CDS
TCATCAAACAGCCTCTTAAC+TGG 0.364820 tig0021537:-53597 None:intergenic
TGCATGTACCGTGGAACTTC+AGG 0.384841 tig0021537:+53983 Msa1392900:CDS
CTGCTAGACTTCCAGTTAAG+AGG 0.392854 tig0021537:+53586 Msa1392900:CDS
GAATTTGAAGGCCAAGGAAC+TGG 0.393650 tig0021537:+55380 Msa1392900:CDS
GGAATTTGAAGGTGAATTGA+AGG 0.408101 tig0021537:+54749 Msa1392900:CDS
TCAAAGTCTTGACAAGAAAC+AGG 0.417784 tig0021537:-53528 None:intergenic
GAATCTAAGAAGAAGCATTT+CGG 0.423186 tig0021537:+54527 Msa1392900:CDS
TGAAGGCCAAATGAAGGAAC+TGG 0.424379 tig0021537:+55175 Msa1392900:CDS
AAAAGTTGAAGTGAAGAAAG+AGG 0.426071 tig0021537:+53932 Msa1392900:CDS
TTGATTCATGCTCCTTCGCT+CGG 0.428334 tig0021537:-55139 None:intergenic
GGAATTTGAATGCCAAATGA+TGG 0.430842 tig0021537:+54833 Msa1392900:CDS
TCTGATACGCCAACAATTTG+TGG 0.440814 tig0021537:+53477 Msa1392900:CDS
TTGATTCATGCTCCTTCACT+CGG 0.444211 tig0021537:-54929 None:intergenic
TTGATTCATGCTCCTTCACT+CGG 0.444211 tig0021537:-55349 None:intergenic
TGAGGAACGGTTTAAGGAGC+TGG 0.447160 tig0021537:+54241 Msa1392900:CDS
GTCTAGTATGTCTAAAAGGC+AGG 0.451554 tig0021537:+53704 Msa1392900:CDS
TGAAGATCAAAGGAAGGAAC+TGG 0.456281 tig0021537:+54965 Msa1392900:CDS
GTCAAACGAGAAGCACTTTG+AGG 0.466153 tig0021537:+54223 Msa1392900:CDS
TCAAAAGATAACAAACTTGA+AGG 0.467231 tig0021537:+54780 Msa1392900:CDS
GCAATTTAAAGACCAGGTTA+AGG 0.467484 tig0021537:+54151 Msa1392900:CDS
TCTAAAGAGAAGCAATTTGA+TGG 0.470278 tig0021537:+55284 Msa1392900:CDS
TCTAAAGAGAAGCAATTTGT+TGG 0.477580 tig0021537:+55074 Msa1392900:CDS
AGAGAGAATTTGAAGATCAA+AGG 0.479440 tig0021537:+54955 Msa1392900:CDS
TCCAAAGAGAATCAACTTGA+AGG 0.480104 tig0021537:+54455 Msa1392900:CDS
CTCTTTGGCCTGAAGTTCCA+CGG 0.482562 tig0021537:-53991 None:intergenic
GAAGGACGAGCAATGGAGCT+AGG 0.495539 tig0021537:+54326 Msa1392900:CDS
TCACCACCACCACAAATTGT+TGG 0.495698 tig0021537:-53486 None:intergenic
AGAGATGCAACATGAAGGTT+CGG 0.496357 tig0021537:+54355 Msa1392900:CDS
TTGACTCAAGTTCCTTAACC+TGG 0.496862 tig0021537:-54163 None:intergenic
AGAATTTGAAGGCCAAATGA+AGG 0.500127 tig0021537:+55169 Msa1392900:CDS
GAGAGAGAATTTGAAGGCCA+AGG 0.505466 tig0021537:+55374 Msa1392900:CDS
TCAAAAGAGAGAGAATTTGA+AGG 0.507245 tig0021537:+55158 Msa1392900:CDS
TCAAAAGAGAGAGAATTTGA+AGG 0.507245 tig0021537:+55368 Msa1392900:CDS
GGAACTTGAAGGACGAGCAA+TGG 0.514924 tig0021537:+54319 Msa1392900:CDS
TGTGAAAGAATTTGAATCAA+AGG 0.523232 tig0021537:+54292 Msa1392900:CDS
TCAACTTGAAGGCCAATTGA+AGG 0.523690 tig0021537:+54466 Msa1392900:CDS
GGAGCATGAATTAAAGGAGA+AGG 0.524213 tig0021537:+54487 Msa1392900:CDS
GGAGTTTGAATCAAAAGAGA+AGG 0.529370 tig0021537:+54812 Msa1392900:CDS
TTAAAGGAGAAGGAATTTGA+AGG 0.539153 tig0021537:+54497 Msa1392900:CDS
CAAACTTGAAGGCAAAGTAA+AGG 0.542147 tig0021537:+54791 Msa1392900:CDS
AGAATTTGAATCAAAGGAGA+AGG 0.544260 tig0021537:+54298 Msa1392900:CDS
GCAATTGAAAGGACAAGTTA+GGG 0.544310 tig0021537:+55253 Msa1392900:CDS
GAATAGCTGTGCTCTAATGA+AGG 0.545828 tig0021537:+54109 Msa1392900:CDS
TCAAAGGAGAAGGAACTTGA+AGG 0.549197 tig0021537:+54308 Msa1392900:CDS
AGAATTTGAAGATCAAAGGA+AGG 0.550611 tig0021537:+54959 Msa1392900:CDS
TCATTGCCGTGATCATCATA+TGG 0.558066 tig0021537:-53663 None:intergenic
GCATTTCGAAAGCCAAATGA+AGG 0.558177 tig0021537:+54875 Msa1392900:CDS
GCAATTTGTTGGCCGTGTGA+AGG 0.559960 tig0021537:+55085 Msa1392900:CDS
AAGAGCTCAAAACAAAAGAA+AGG 0.562229 tig0021537:+55231 Msa1392900:CDS
GCAATTTGATGGCCGTGTGA+AGG 0.565210 tig0021537:+55295 Msa1392900:CDS
GCTGATGAATGAACTTGCAT+TGG 0.569923 tig0021537:+53755 Msa1392900:CDS
GCAGAAGCAATTTAAAGACC+AGG 0.570414 tig0021537:+54145 Msa1392900:CDS
GCATTGTGAAAGCCAAATGA+AGG 0.570742 tig0021537:+54424 Msa1392900:CDS
GAAGCATTTCGGAAGCATGA+TGG 0.571608 tig0021537:+54538 Msa1392900:CDS
AAGGACGAGCAATGGAGCTA+GGG 0.574030 tig0021537:+54327 Msa1392900:CDS
GCAACATGAAAGCCGAGCGA+AGG 0.576142 tig0021537:+55127 Msa1392900:CDS
TGGTGATGATAATGTGAAGA+AGG 0.576558 tig0021537:+53503 Msa1392900:CDS
ACTGGAATCTAAAACGAAGC+AGG 0.577734 tig0021537:+55193 Msa1392900:CDS
GCAACATGAAAGCCGAGTGA+AGG 0.578492 tig0021537:+55337 Msa1392900:CDS
ACAAAAGAAAGGCAATTGAA+AGG 0.581900 tig0021537:+55242 Msa1392900:CDS
AGTGAAGAAAGAGGAACTGA+AGG 0.582287 tig0021537:+53941 Msa1392900:CDS
GCAACATGAAGGTTCGGTGA+AGG 0.584082 tig0021537:+54361 Msa1392900:CDS
ACGAGAAGCACTTTGAGGAA+CGG 0.585238 tig0021537:+54228 Msa1392900:CDS
ACAAAAGAGAGGCAATTGAA+AGG 0.586294 tig0021537:+55032 Msa1392900:CDS
GCAGTGTGAAAGACGAGTGG+AGG 0.593274 tig0021537:+54193 Msa1392900:CDS
ACGCCAACAATTTGTGGTGG+TGG 0.593868 tig0021537:+53483 Msa1392900:CDS
TGAATGCCAAATGATGCAGC+AGG 0.601329 tig0021537:+54388 Msa1392900:CDS
TCAACTTGAAGGCCGCGTGA+AGG 0.602903 tig0021537:+54707 Msa1392900:intron
ACAAAAGAGATGCAACATGA+AGG 0.603273 tig0021537:+54350 Msa1392900:CDS
TCAACATGAAAGCCGAGTGA+AGG 0.603798 tig0021537:+54917 Msa1392900:CDS
TTGACTCAAACTCCTTCACA+CGG 0.618553 tig0021537:-55097 None:intergenic
TTGACTCAAACTCCTTCACA+CGG 0.618553 tig0021537:-55307 None:intergenic
TTGATTCAAATTCTTTCACA+CGG 0.620040 tig0021537:-54289 None:intergenic
AGGAGCTCAAATCAAGAATG+AGG 0.620661 tig0021537:+54561 Msa1392900:CDS
GCGCAACCATATGATGATCA+CGG 0.621089 tig0021537:+53657 Msa1392900:CDS
CAGTTGAATAATGGATGTCG+AGG 0.622405 tig0021537:+53452 None:intergenic
GATCACGGCAATGACGCAGA+TGG 0.626486 tig0021537:+53672 Msa1392900:CDS
GAAGCAGTGTGAAAGACGAG+TGG 0.629119 tig0021537:+54190 Msa1392900:CDS
TCTAGTATGTCTAAAAGGCA+GGG 0.633650 tig0021537:+53705 Msa1392900:CDS
GTCATTGAAAGAACAAGTTG+AGG 0.638813 tig0021537:+54583 Msa1392900:CDS
GCATTTCGGAAGCATGATGG+AGG 0.647166 tig0021537:+54541 Msa1392900:CDS
TTGATTCAAATTCCTTCACG+CGG 0.649009 tig0021537:-54719 None:intergenic
AGGAGCTCAAAACAAAAGAG+AGG 0.668553 tig0021537:+55021 Msa1392900:CDS
TGCAAGTTCATTCATCAGCG+AGG 0.690629 tig0021537:-53751 None:intergenic
GAAGGAATTTGAAGGCCGCG+TGG 0.695794 tig0021537:+54505 Msa1392900:CDS
GAAGCAGGTTGAAAGCCAAG+TGG 0.696461 tig0021537:+55208 Msa1392900:CDS
GATACGCCAACAATTTGTGG+TGG 0.704134 tig0021537:+53480 Msa1392900:CDS
GCTTCTTCTTAGATTCCACG+CGG 0.781721 tig0021537:-54520 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AGTCGTTTAAGAAATGTAAA+AGG + tig0021537:53784-53803 Msa1392900:CDS 25.0%
! CTCTTCAATATCTTTCTTTA+TGG - tig0021537:53841-53860 None:intergenic 25.0%
! GATGCAACAAACAAATTAAT+TGG + tig0021537:54023-54042 Msa1392900:CDS 25.0%
! TTGATTCAAATTCTTTCACA+CGG - tig0021537:54292-54311 None:intergenic 25.0%
! TGTGAAAGAATTTGAATCAA+AGG + tig0021537:54292-54311 Msa1392900:CDS 25.0%
! GGAATTTGAATCAAAAAAGA+AGG + tig0021537:54728-54747 Msa1392900:CDS 25.0%
! TCAAAAAAGAAGGAATTTGA+AGG + tig0021537:54738-54757 Msa1392900:CDS 25.0%
! TCAAAAGATAACAAACTTGA+AGG + tig0021537:54780-54799 Msa1392900:CDS 25.0%
! TTGATAGAAAATCCATCATT+TGG - tig0021537:54848-54867 None:intergenic 25.0%
! AGTCGTTTAAGAAATGTAAA+AGG + tig0021537:53784-53803 Msa1392900:CDS 25.0%
! CTCTTCAATATCTTTCTTTA+TGG - tig0021537:53841-53860 None:intergenic 25.0%
! GATGCAACAAACAAATTAAT+TGG + tig0021537:54023-54042 Msa1392900:CDS 25.0%
! TTGATTCAAATTCTTTCACA+CGG - tig0021537:54292-54311 None:intergenic 25.0%
! TGTGAAAGAATTTGAATCAA+AGG + tig0021537:54292-54311 Msa1392900:CDS 25.0%
! GGAATTTGAATCAAAAAAGA+AGG + tig0021537:54728-54747 Msa1392900:CDS 25.0%
! TCAAAAAAGAAGGAATTTGA+AGG + tig0021537:54738-54757 Msa1392900:CDS 25.0%
! TCAAAAGATAACAAACTTGA+AGG + tig0021537:54780-54799 Msa1392900:CDS 25.0%
! TTGATAGAAAATCCATCATT+TGG - tig0021537:54848-54867 None:intergenic 25.0%
AAAAGTTGAAGTGAAGAAAG+AGG + tig0021537:53932-53951 Msa1392900:CDS 30.0%
AGAATTTGAATCAAAGGAGA+AGG + tig0021537:54298-54317 Msa1392900:CDS 30.0%
TTAATTCATGCTCCTTCAAT+TGG - tig0021537:54481-54500 None:intergenic 30.0%
! ATTGAAGGAGCATGAATTAA+AGG + tig0021537:54481-54500 Msa1392900:CDS 30.0%
TTAAAGGAGAAGGAATTTGA+AGG + tig0021537:54497-54516 Msa1392900:CDS 30.0%
!! GAATCTAAGAAGAAGCATTT+CGG + tig0021537:54527-54546 Msa1392900:CDS 30.0%
!! CCTTCACTTGTTTTTCAAAT+TGG - tig0021537:54670-54689 None:intergenic 30.0%
CCAATTTGAAAAACAAGTGA+AGG + tig0021537:54667-54686 Msa1392900:intron 30.0%
AGAGAGAATTTGAAGATCAA+AGG + tig0021537:54955-54974 Msa1392900:CDS 30.0%
AGAATTTGAAGATCAAAGGA+AGG + tig0021537:54959-54978 Msa1392900:CDS 30.0%
GCAATTGAAAGGACAATTTA+AGG + tig0021537:55043-55062 Msa1392900:CDS 30.0%
TCTAAAGAGAAGCAATTTGT+TGG + tig0021537:55074-55093 Msa1392900:CDS 30.0%
TCAAAAGAGAGAGAATTTGA+AGG + tig0021537:54948-54967 Msa1392900:CDS 30.0%
AAGAGCTCAAAACAAAAGAA+AGG + tig0021537:55231-55250 Msa1392900:CDS 30.0%
ACAAAAGAAAGGCAATTGAA+AGG + tig0021537:55242-55261 Msa1392900:CDS 30.0%
TCTAAAGAGAAGCAATTTGA+TGG + tig0021537:55284-55303 Msa1392900:CDS 30.0%
TCAAAAGAGAGAGAATTTGA+AGG + tig0021537:54948-54967 Msa1392900:CDS 30.0%
AAAAGTTGAAGTGAAGAAAG+AGG + tig0021537:53932-53951 Msa1392900:CDS 30.0%
AGAATTTGAATCAAAGGAGA+AGG + tig0021537:54298-54317 Msa1392900:CDS 30.0%
TTAATTCATGCTCCTTCAAT+TGG - tig0021537:54481-54500 None:intergenic 30.0%
! ATTGAAGGAGCATGAATTAA+AGG + tig0021537:54481-54500 Msa1392900:CDS 30.0%
TTAAAGGAGAAGGAATTTGA+AGG + tig0021537:54497-54516 Msa1392900:CDS 30.0%
!! GAATCTAAGAAGAAGCATTT+CGG + tig0021537:54527-54546 Msa1392900:CDS 30.0%
!! CCTTCACTTGTTTTTCAAAT+TGG - tig0021537:54670-54689 None:intergenic 30.0%
CCAATTTGAAAAACAAGTGA+AGG + tig0021537:54667-54686 Msa1392900:intron 30.0%
AGAGAGAATTTGAAGATCAA+AGG + tig0021537:54955-54974 Msa1392900:CDS 30.0%
AGAATTTGAAGATCAAAGGA+AGG + tig0021537:54959-54978 Msa1392900:CDS 30.0%
GCAATTGAAAGGACAATTTA+AGG + tig0021537:55043-55062 Msa1392900:CDS 30.0%
TCTAAAGAGAAGCAATTTGT+TGG + tig0021537:55074-55093 Msa1392900:CDS 30.0%
TCAAAAGAGAGAGAATTTGA+AGG + tig0021537:54948-54967 Msa1392900:CDS 30.0%
AAGAGCTCAAAACAAAAGAA+AGG + tig0021537:55231-55250 Msa1392900:CDS 30.0%
ACAAAAGAAAGGCAATTGAA+AGG + tig0021537:55242-55261 Msa1392900:CDS 30.0%
TCTAAAGAGAAGCAATTTGA+TGG + tig0021537:55284-55303 Msa1392900:CDS 30.0%
TCAAAAGAGAGAGAATTTGA+AGG + tig0021537:54948-54967 Msa1392900:CDS 30.0%
! TGGTGATGATAATGTGAAGA+AGG + tig0021537:53503-53522 Msa1392900:CDS 35.0%
TCAAAGTCTTGACAAGAAAC+AGG - tig0021537:53531-53550 None:intergenic 35.0%
! CTTTTAGACATACTAGACGA+AGG - tig0021537:53702-53721 None:intergenic 35.0%
CTTCGTCTAGTATGTCTAAA+AGG + tig0021537:53700-53719 Msa1392900:CDS 35.0%
TCTAGTATGTCTAAAAGGCA+GGG + tig0021537:53705-53724 Msa1392900:CDS 35.0%
!!! GGTACATGCAGCAATTTTTT+GGG - tig0021537:53973-53992 None:intergenic 35.0%
TGCATCAAGATCTTTCTCTT+TGG - tig0021537:54009-54028 None:intergenic 35.0%
GCAATTTAAAGACCAGGTTA+AGG + tig0021537:54151-54170 Msa1392900:CDS 35.0%
ACAAAAGAGATGCAACATGA+AGG + tig0021537:54350-54369 Msa1392900:CDS 35.0%
TCCAAAGAGAATCAACTTGA+AGG + tig0021537:54455-54474 Msa1392900:CDS 35.0%
GTCATTGAAAGAACAAGTTG+AGG + tig0021537:54583-54602 Msa1392900:CDS 35.0%
TTGATTCAAATTCCTTCACG+CGG - tig0021537:54722-54741 None:intergenic 35.0%
GGAATTTGAAGGTGAATTGA+AGG + tig0021537:54749-54768 Msa1392900:CDS 35.0%
CAAACTTGAAGGCAAAGTAA+AGG + tig0021537:54791-54810 Msa1392900:CDS 35.0%
GGAGTTTGAATCAAAAGAGA+AGG + tig0021537:54812-54831 Msa1392900:CDS 35.0%
GGAATTTGAATGCCAAATGA+TGG + tig0021537:54382-54401 Msa1392900:CDS 35.0%
TTGACTCAAACTCCTTCATT+TGG - tig0021537:54890-54909 None:intergenic 35.0%
ACAAAAGAGAGGCAATTGAA+AGG + tig0021537:55032-55051 Msa1392900:CDS 35.0%
AGAATTTGAAGGCCAAATGA+AGG + tig0021537:55169-55188 Msa1392900:CDS 35.0%
TAGATTCCAGTTCCTTCATT+TGG - tig0021537:55184-55203 None:intergenic 35.0%
GCAATTGAAAGGACAAGTTA+GGG + tig0021537:55253-55272 Msa1392900:CDS 35.0%
! TGGTGATGATAATGTGAAGA+AGG + tig0021537:53503-53522 Msa1392900:CDS 35.0%
TCAAAGTCTTGACAAGAAAC+AGG - tig0021537:53531-53550 None:intergenic 35.0%
! CTTTTAGACATACTAGACGA+AGG - tig0021537:53702-53721 None:intergenic 35.0%
CTTCGTCTAGTATGTCTAAA+AGG + tig0021537:53700-53719 Msa1392900:CDS 35.0%
TCTAGTATGTCTAAAAGGCA+GGG + tig0021537:53705-53724 Msa1392900:CDS 35.0%
!!! GGTACATGCAGCAATTTTTT+GGG - tig0021537:53973-53992 None:intergenic 35.0%
TGCATCAAGATCTTTCTCTT+TGG - tig0021537:54009-54028 None:intergenic 35.0%
GCAATTTAAAGACCAGGTTA+AGG + tig0021537:54151-54170 Msa1392900:CDS 35.0%
ACAAAAGAGATGCAACATGA+AGG + tig0021537:54350-54369 Msa1392900:CDS 35.0%
TCCAAAGAGAATCAACTTGA+AGG + tig0021537:54455-54474 Msa1392900:CDS 35.0%
GTCATTGAAAGAACAAGTTG+AGG + tig0021537:54583-54602 Msa1392900:CDS 35.0%
TTGATTCAAATTCCTTCACG+CGG - tig0021537:54722-54741 None:intergenic 35.0%
GGAATTTGAAGGTGAATTGA+AGG + tig0021537:54749-54768 Msa1392900:CDS 35.0%
CAAACTTGAAGGCAAAGTAA+AGG + tig0021537:54791-54810 Msa1392900:CDS 35.0%
GGAGTTTGAATCAAAAGAGA+AGG + tig0021537:54812-54831 Msa1392900:CDS 35.0%
GGAATTTGAATGCCAAATGA+TGG + tig0021537:54382-54401 Msa1392900:CDS 35.0%
TTGACTCAAACTCCTTCATT+TGG - tig0021537:54890-54909 None:intergenic 35.0%
ACAAAAGAGAGGCAATTGAA+AGG + tig0021537:55032-55051 Msa1392900:CDS 35.0%
AGAATTTGAAGGCCAAATGA+AGG + tig0021537:55169-55188 Msa1392900:CDS 35.0%
TAGATTCCAGTTCCTTCATT+TGG - tig0021537:55184-55203 None:intergenic 35.0%
GCAATTGAAAGGACAAGTTA+GGG + tig0021537:55253-55272 Msa1392900:CDS 35.0%
TCTGATACGCCAACAATTTG+TGG + tig0021537:53477-53496 Msa1392900:CDS 40.0%
TCATCAAACAGCCTCTTAAC+TGG - tig0021537:53600-53619 None:intergenic 40.0%
TCATTGCCGTGATCATCATA+TGG - tig0021537:53666-53685 None:intergenic 40.0%
GTCTAGTATGTCTAAAAGGC+AGG + tig0021537:53704-53723 Msa1392900:CDS 40.0%
GCTGATGAATGAACTTGCAT+TGG + tig0021537:53755-53774 Msa1392900:CDS 40.0%
AGTGAAGAAAGAGGAACTGA+AGG + tig0021537:53941-53960 Msa1392900:CDS 40.0%
!!! CGGTACATGCAGCAATTTTT+TGG - tig0021537:53974-53993 None:intergenic 40.0%
AAAAATTGCTGCATGTACCG+TGG + tig0021537:53974-53993 Msa1392900:CDS 40.0%
GAATAGCTGTGCTCTAATGA+AGG + tig0021537:54109-54128 Msa1392900:CDS 40.0%
GCAGAAGCAATTTAAAGACC+AGG + tig0021537:54145-54164 Msa1392900:CDS 40.0%
TTGACTCAAGTTCCTTAACC+TGG - tig0021537:54166-54185 None:intergenic 40.0%
TCAAAGGAGAAGGAACTTGA+AGG + tig0021537:54308-54327 Msa1392900:CDS 40.0%
AGAGATGCAACATGAAGGTT+CGG + tig0021537:54355-54374 Msa1392900:CDS 40.0%
TCAATACCTGCTGCATCATT+TGG - tig0021537:54397-54416 None:intergenic 40.0%
GCATTGTGAAAGCCAAATGA+AGG + tig0021537:54424-54443 Msa1392900:CDS 40.0%
!! GCCTTCAAGTTGATTCTCTT+TGG - tig0021537:54459-54478 None:intergenic 40.0%
TCAACTTGAAGGCCAATTGA+AGG + tig0021537:54466-54485 Msa1392900:CDS 40.0%
GGAGCATGAATTAAAGGAGA+AGG + tig0021537:54487-54506 Msa1392900:CDS 40.0%
AGGAGCTCAAATCAAGAATG+AGG + tig0021537:54561-54580 Msa1392900:CDS 40.0%
AGTCAAGAGAGTCAACTTGA+AGG + tig0021537:54696-54715 Msa1392900:intron 40.0%
GCATTTCGAAAGCCAAATGA+AGG + tig0021537:54875-54894 Msa1392900:CDS 40.0%
TTGATTCATGCTCCTTCACT+CGG - tig0021537:54932-54951 None:intergenic 40.0%
TGAAGATCAAAGGAAGGAAC+TGG + tig0021537:54965-54984 Msa1392900:CDS 40.0%
!! GAAGCATTTTGAAAGCCAAG+TGG + tig0021537:54998-55017 Msa1392900:CDS 40.0%
AGGAGCTCAAAACAAAAGAG+AGG + tig0021537:55021-55040 Msa1392900:CDS 40.0%
TTGACTCAAACTCCTTCACA+CGG - tig0021537:55100-55119 None:intergenic 40.0%
! ACTGGAATCTAAAACGAAGC+AGG + tig0021537:55193-55212 Msa1392900:CDS 40.0%
!!! TTGTTTTGAGCTCTTCCACT+TGG - tig0021537:55226-55245 None:intergenic 40.0%
GGCAATTGAAAGGACAAGTT+AGG + tig0021537:55252-55271 Msa1392900:CDS 40.0%
TTGACTCAAACTCCTTCACA+CGG - tig0021537:55100-55119 None:intergenic 40.0%
TTGATTCATGCTCCTTCACT+CGG - tig0021537:54932-54951 None:intergenic 40.0%
TCTGATACGCCAACAATTTG+TGG + tig0021537:53477-53496 Msa1392900:CDS 40.0%
TCATCAAACAGCCTCTTAAC+TGG - tig0021537:53600-53619 None:intergenic 40.0%
TCATTGCCGTGATCATCATA+TGG - tig0021537:53666-53685 None:intergenic 40.0%
GTCTAGTATGTCTAAAAGGC+AGG + tig0021537:53704-53723 Msa1392900:CDS 40.0%
GCTGATGAATGAACTTGCAT+TGG + tig0021537:53755-53774 Msa1392900:CDS 40.0%
AGTGAAGAAAGAGGAACTGA+AGG + tig0021537:53941-53960 Msa1392900:CDS 40.0%
!!! CGGTACATGCAGCAATTTTT+TGG - tig0021537:53974-53993 None:intergenic 40.0%
AAAAATTGCTGCATGTACCG+TGG + tig0021537:53974-53993 Msa1392900:CDS 40.0%
GAATAGCTGTGCTCTAATGA+AGG + tig0021537:54109-54128 Msa1392900:CDS 40.0%
GCAGAAGCAATTTAAAGACC+AGG + tig0021537:54145-54164 Msa1392900:CDS 40.0%
TTGACTCAAGTTCCTTAACC+TGG - tig0021537:54166-54185 None:intergenic 40.0%
TCAAAGGAGAAGGAACTTGA+AGG + tig0021537:54308-54327 Msa1392900:CDS 40.0%
AGAGATGCAACATGAAGGTT+CGG + tig0021537:54355-54374 Msa1392900:CDS 40.0%
TCAATACCTGCTGCATCATT+TGG - tig0021537:54397-54416 None:intergenic 40.0%
GCATTGTGAAAGCCAAATGA+AGG + tig0021537:54424-54443 Msa1392900:CDS 40.0%
!! GCCTTCAAGTTGATTCTCTT+TGG - tig0021537:54459-54478 None:intergenic 40.0%
TCAACTTGAAGGCCAATTGA+AGG + tig0021537:54466-54485 Msa1392900:CDS 40.0%
GGAGCATGAATTAAAGGAGA+AGG + tig0021537:54487-54506 Msa1392900:CDS 40.0%
AGGAGCTCAAATCAAGAATG+AGG + tig0021537:54561-54580 Msa1392900:CDS 40.0%
AGTCAAGAGAGTCAACTTGA+AGG + tig0021537:54696-54715 Msa1392900:intron 40.0%
GCATTTCGAAAGCCAAATGA+AGG + tig0021537:54875-54894 Msa1392900:CDS 40.0%
TTGATTCATGCTCCTTCACT+CGG - tig0021537:54932-54951 None:intergenic 40.0%
TGAAGATCAAAGGAAGGAAC+TGG + tig0021537:54965-54984 Msa1392900:CDS 40.0%
!! GAAGCATTTTGAAAGCCAAG+TGG + tig0021537:54998-55017 Msa1392900:CDS 40.0%
AGGAGCTCAAAACAAAAGAG+AGG + tig0021537:55021-55040 Msa1392900:CDS 40.0%
TTGACTCAAACTCCTTCACA+CGG - tig0021537:55100-55119 None:intergenic 40.0%
! ACTGGAATCTAAAACGAAGC+AGG + tig0021537:55193-55212 Msa1392900:CDS 40.0%
!!! TTGTTTTGAGCTCTTCCACT+TGG - tig0021537:55226-55245 None:intergenic 40.0%
GGCAATTGAAAGGACAAGTT+AGG + tig0021537:55252-55271 Msa1392900:CDS 40.0%
TTGACTCAAACTCCTTCACA+CGG - tig0021537:55100-55119 None:intergenic 40.0%
TTGATTCATGCTCCTTCACT+CGG - tig0021537:54932-54951 None:intergenic 40.0%
GATACGCCAACAATTTGTGG+TGG + tig0021537:53480-53499 Msa1392900:CDS 45.0%
TCACCACCACCACAAATTGT+TGG - tig0021537:53489-53508 None:intergenic 45.0%
CTGCTAGACTTCCAGTTAAG+AGG + tig0021537:53586-53605 Msa1392900:CDS 45.0%
GCGCAACCATATGATGATCA+CGG + tig0021537:53657-53676 Msa1392900:CDS 45.0%
TGCAAGTTCATTCATCAGCG+AGG - tig0021537:53754-53773 None:intergenic 45.0%
!! GTCAAACGAGAAGCACTTTG+AGG + tig0021537:54223-54242 Msa1392900:CDS 45.0%
!! ACGAGAAGCACTTTGAGGAA+CGG + tig0021537:54228-54247 Msa1392900:CDS 45.0%
! GCACTTTGAGGAACGGTTTA+AGG + tig0021537:54235-54254 Msa1392900:CDS 45.0%
TGAATGCCAAATGATGCAGC+AGG + tig0021537:54388-54407 Msa1392900:CDS 45.0%
TGGACTCAAGCTCCTTCATT+TGG - tig0021537:54439-54458 None:intergenic 45.0%
GCTTCTTCTTAGATTCCACG+CGG - tig0021537:54523-54542 None:intergenic 45.0%
! GAAGCATTTCGGAAGCATGA+TGG + tig0021537:54538-54557 Msa1392900:CDS 45.0%
TCAACATGAAAGCCGAGTGA+AGG + tig0021537:54917-54936 Msa1392900:CDS 45.0%
!! GCATTTTGAAAGCCAAGTGG+AGG + tig0021537:55001-55020 Msa1392900:CDS 45.0%
!!! TTGTTTTGAGCTCCTCCACT+TGG - tig0021537:55016-55035 None:intergenic 45.0%
TTGATTCATGCTCCTTCGCT+CGG - tig0021537:55142-55161 None:intergenic 45.0%
TGAAGGCCAAATGAAGGAAC+TGG + tig0021537:55175-55194 Msa1392900:CDS 45.0%
GAGAGAGAATTTGAAGGCCA+AGG + tig0021537:55164-55183 Msa1392900:CDS 45.0%
GAATTTGAAGGCCAAGGAAC+TGG + tig0021537:55380-55399 Msa1392900:CDS 45.0%
GATACGCCAACAATTTGTGG+TGG + tig0021537:53480-53499 Msa1392900:CDS 45.0%
TCACCACCACCACAAATTGT+TGG - tig0021537:53489-53508 None:intergenic 45.0%
CTGCTAGACTTCCAGTTAAG+AGG + tig0021537:53586-53605 Msa1392900:CDS 45.0%
GCGCAACCATATGATGATCA+CGG + tig0021537:53657-53676 Msa1392900:CDS 45.0%
TGCAAGTTCATTCATCAGCG+AGG - tig0021537:53754-53773 None:intergenic 45.0%
!! GTCAAACGAGAAGCACTTTG+AGG + tig0021537:54223-54242 Msa1392900:CDS 45.0%
!! ACGAGAAGCACTTTGAGGAA+CGG + tig0021537:54228-54247 Msa1392900:CDS 45.0%
! GCACTTTGAGGAACGGTTTA+AGG + tig0021537:54235-54254 Msa1392900:CDS 45.0%
TGAATGCCAAATGATGCAGC+AGG + tig0021537:54388-54407 Msa1392900:CDS 45.0%
TGGACTCAAGCTCCTTCATT+TGG - tig0021537:54439-54458 None:intergenic 45.0%
GCTTCTTCTTAGATTCCACG+CGG - tig0021537:54523-54542 None:intergenic 45.0%
! GAAGCATTTCGGAAGCATGA+TGG + tig0021537:54538-54557 Msa1392900:CDS 45.0%
TCAACATGAAAGCCGAGTGA+AGG + tig0021537:54917-54936 Msa1392900:CDS 45.0%
!! GCATTTTGAAAGCCAAGTGG+AGG + tig0021537:55001-55020 Msa1392900:CDS 45.0%
!!! TTGTTTTGAGCTCCTCCACT+TGG - tig0021537:55016-55035 None:intergenic 45.0%
TTGATTCATGCTCCTTCGCT+CGG - tig0021537:55142-55161 None:intergenic 45.0%
TGAAGGCCAAATGAAGGAAC+TGG + tig0021537:55175-55194 Msa1392900:CDS 45.0%
GAGAGAGAATTTGAAGGCCA+AGG + tig0021537:55164-55183 Msa1392900:CDS 45.0%
GAATTTGAAGGCCAAGGAAC+TGG + tig0021537:55380-55399 Msa1392900:CDS 45.0%
ACGCCAACAATTTGTGGTGG+TGG + tig0021537:53483-53502 Msa1392900:CDS 50.0%
TGCATGTACCGTGGAACTTC+AGG + tig0021537:53983-54002 Msa1392900:CDS 50.0%
CTCTTTGGCCTGAAGTTCCA+CGG - tig0021537:53994-54013 None:intergenic 50.0%
GAAGCAGTGTGAAAGACGAG+TGG + tig0021537:54190-54209 Msa1392900:CDS 50.0%
TGAGGAACGGTTTAAGGAGC+TGG + tig0021537:54241-54260 Msa1392900:CDS 50.0%
GGAACTTGAAGGACGAGCAA+TGG + tig0021537:54319-54338 Msa1392900:CDS 50.0%
AAGGACGAGCAATGGAGCTA+GGG + tig0021537:54327-54346 Msa1392900:CDS 50.0%
!! GCAACATGAAGGTTCGGTGA+AGG + tig0021537:54361-54380 Msa1392900:CDS 50.0%
! GCATTTCGGAAGCATGATGG+AGG + tig0021537:54541-54560 Msa1392900:CDS 50.0%
!! GCAATTTGTTGGCCGTGTGA+AGG + tig0021537:55085-55104 Msa1392900:CDS 50.0%
! GAAGCAGGTTGAAAGCCAAG+TGG + tig0021537:55208-55227 Msa1392900:CDS 50.0%
! GCAATTTGATGGCCGTGTGA+AGG + tig0021537:55295-55314 Msa1392900:CDS 50.0%
GCAACATGAAAGCCGAGTGA+AGG + tig0021537:55337-55356 Msa1392900:CDS 50.0%
ACGCCAACAATTTGTGGTGG+TGG + tig0021537:53483-53502 Msa1392900:CDS 50.0%
TGCATGTACCGTGGAACTTC+AGG + tig0021537:53983-54002 Msa1392900:CDS 50.0%
CTCTTTGGCCTGAAGTTCCA+CGG - tig0021537:53994-54013 None:intergenic 50.0%
GAAGCAGTGTGAAAGACGAG+TGG + tig0021537:54190-54209 Msa1392900:CDS 50.0%
TGAGGAACGGTTTAAGGAGC+TGG + tig0021537:54241-54260 Msa1392900:CDS 50.0%
GGAACTTGAAGGACGAGCAA+TGG + tig0021537:54319-54338 Msa1392900:CDS 50.0%
AAGGACGAGCAATGGAGCTA+GGG + tig0021537:54327-54346 Msa1392900:CDS 50.0%
!! GCAACATGAAGGTTCGGTGA+AGG + tig0021537:54361-54380 Msa1392900:CDS 50.0%
! GCATTTCGGAAGCATGATGG+AGG + tig0021537:54541-54560 Msa1392900:CDS 50.0%
!! GCAATTTGTTGGCCGTGTGA+AGG + tig0021537:55085-55104 Msa1392900:CDS 50.0%
! GAAGCAGGTTGAAAGCCAAG+TGG + tig0021537:55208-55227 Msa1392900:CDS 50.0%
! GCAATTTGATGGCCGTGTGA+AGG + tig0021537:55295-55314 Msa1392900:CDS 50.0%
GCAACATGAAAGCCGAGTGA+AGG + tig0021537:55337-55356 Msa1392900:CDS 50.0%
GATCACGGCAATGACGCAGA+TGG + tig0021537:53672-53691 Msa1392900:CDS 55.0%
GCAGTGTGAAAGACGAGTGG+AGG + tig0021537:54193-54212 Msa1392900:CDS 55.0%
GAAGGACGAGCAATGGAGCT+AGG + tig0021537:54326-54345 Msa1392900:CDS 55.0%
GAAGGAATTTGAAGGCCGCG+TGG + tig0021537:54505-54524 Msa1392900:CDS 55.0%
TCAACTTGAAGGCCGCGTGA+AGG + tig0021537:54707-54726 Msa1392900:intron 55.0%
GCAACATGAAAGCCGAGCGA+AGG + tig0021537:55127-55146 Msa1392900:CDS 55.0%
GATCACGGCAATGACGCAGA+TGG + tig0021537:53672-53691 Msa1392900:CDS 55.0%
GCAGTGTGAAAGACGAGTGG+AGG + tig0021537:54193-54212 Msa1392900:CDS 55.0%
GAAGGACGAGCAATGGAGCT+AGG + tig0021537:54326-54345 Msa1392900:CDS 55.0%
GAAGGAATTTGAAGGCCGCG+TGG + tig0021537:54505-54524 Msa1392900:CDS 55.0%
TCAACTTGAAGGCCGCGTGA+AGG + tig0021537:54707-54726 Msa1392900:intron 55.0%
GCAACATGAAAGCCGAGCGA+AGG + tig0021537:55127-55146 Msa1392900:CDS 55.0%
Chromosome Type Strat End Strand Name
tig0021537 gene 53462 55409 53462 ID=Msa1392900;Name=Msa1392900
tig0021537 mRNA 53462 55409 53462 ID=Msa1392900-mRNA-1;Parent=Msa1392900;Name=Msa1392900-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|0|0|1|1|1|2|0|623
tig0021537 exon 53462 54641 53462 ID=Msa1392900-mRNA-1:exon:13521;Parent=Msa1392900-mRNA-1
tig0021537 exon 54718 55409 54718 ID=Msa1392900-mRNA-1:exon:13522;Parent=Msa1392900-mRNA-1
tig0021537 CDS 53462 54641 53462 ID=Msa1392900-mRNA-1:cds;Parent=Msa1392900-mRNA-1
tig0021537 CDS 54718 55409 54718 ID=Msa1392900-mRNA-1:cds;Parent=Msa1392900-mRNA-1
Gene Sequence

>Msa1392900

ATGGATGTCGAGGCTTCTGATACGCCAACAATTTGTGGTGGTGGTGATGATAATGTGAAGAAGGAACCTGTTTCTTGTCAAGACTTTGAATCATGTTTTAGAACATTTAGTAGTAAACATGATTCTGCTAGACTTCCAGTTAAGAGGCTGTTTGATGACAGCGATTCATTCGATATTTCTGTTAAGAAATCAAAAGCGCAACCATATGATGATCACGGCAATGACGCAGATGGTATTCCTTCGTCTAGTATGTCTAAAAGGCAGGGCAAATTTACTAATGAATCATTTTCCTCGCTGATGAATGAACTTGCATTGGCACAAAAGTCGTTTAAGAAATGTAAAAGGAAGAGTCGAGTAGAAAAAGAGAGATTGCAGTCCATAAAGAAAGATATTGAAGAGTGCTTCAAAGAGCTTGAAGATAAGAACAAGCAAGTTAGTTGTGTAAATGAAATTCACAACGAAATGCAGAGAAAAGTTGAAGTGAAGAAAGAGGAACTGAAGGCTCTTTCCCAAAAAATTGCTGCATGTACCGTGGAACTTCAGGCCAAAGAGAAAGATCTTGATGCAACAAACAAATTAATTGGTGAAGAAGCAGAAAAATTAGAGTCGACAAAGAAGAAATCGATAAATATAATATTAGAAATGAAGAATAGCTGTGCTCTAATGAAGGACTCTGAGTCTAAGCAGAAGCAATTTAAAGACCAGGTTAAGGAACTTGAGTCAAAAGAGAAGCAGTGTGAAAGACGAGTGGAGGAGCTTCAGTCAAACGAGAAGCACTTTGAGGAACGGTTTAAGGAGCTGGAGTCAAGAGAGAAGCAGCTTGAAGTCCGTGTGAAAGAATTTGAATCAAAGGAGAAGGAACTTGAAGGACGAGCAATGGAGCTAGGGACAAAAGAGATGCAACATGAAGGTTCGGTGAAGGAATTTGAATGCCAAATGATGCAGCAGGTATTGAAGCAGAAGCATTGTGAAAGCCAAATGAAGGAGCTTGAGTCCAAAGAGAATCAACTTGAAGGCCAATTGAAGGAGCATGAATTAAAGGAGAAGGAATTTGAAGGCCGCGTGGAATCTAAGAAGAAGCATTTCGGAAGCATGATGGAGGAGCTCAAATCAAGAATGAGGTCATTGAAAGAACAAGTTGAGGAACTTGACTCTAAAGAGAAGCGACTTGATCATCAATGCCGCGTGAAGGAATTTGAATCAAAAAAGAAGGAATTTGAAGGTGAATTGAAGGAGTTTGAGTCAAAAGATAACAAACTTGAAGGCAAAGTAAAGGAGTTTGAATCAAAAGAGAAGGAATTTGAATGCCAAATGATGGATTTTCTATCAAAACAGAAGCATTTCGAAAGCCAAATGAAGGAGTTTGAGTCAAAAAAGAATCAACATGAAAGCCGAGTGAAGGAGCATGAATCAAAAGAGAGAGAATTTGAAGATCAAAGGAAGGAACTGGAATCTAAAAAGAAGCATTTTGAAAGCCAAGTGGAGGAGCTCAAAACAAAAGAGAGGCAATTGAAAGGACAATTTAAGGAACTTGAGTCTAAAGAGAAGCAATTTGTTGGCCGTGTGAAGGAGTTTGAGTCAAAAGAGAAGCAACATGAAAGCCGAGCGAAGGAGCATGAATCAAAAGAGAGAGAATTTGAAGGCCAAATGAAGGAACTGGAATCTAAAACGAAGCAGGTTGAAAGCCAAGTGGAAGAGCTCAAAACAAAAGAAAGGCAATTGAAAGGACAAGTTAGGGAACTTGAGTCTAAAGAGAAGCAATTTGATGGCCGTGTGAAGGAGTTTGAGTCAAAAGAGAAGCAACATGAAAGCCGAGTGAAGGAGCATGAATCAAAAGAGAGAGAATTTGAAGGCCAAGGAACTGGAATCTAA

Protein sequence

>Msa1392900

MDVEASDTPTICGGGDDNVKKEPVSCQDFESCFRTFSSKHDSARLPVKRLFDDSDSFDISVKKSKAQPYDDHGNDADGIPSSSMSKRQGKFTNESFSSLMNELALAQKSFKKCKRKSRVEKERLQSIKKDIEECFKELEDKNKQVSCVNEIHNEMQRKVEVKKEELKALSQKIAACTVELQAKEKDLDATNKLIGEEAEKLESTKKKSINIILEMKNSCALMKDSESKQKQFKDQVKELESKEKQCERRVEELQSNEKHFEERFKELESREKQLEVRVKEFESKEKELEGRAMELGTKEMQHEGSVKEFECQMMQQVLKQKHCESQMKELESKENQLEGQLKEHELKEKEFEGRVESKKKHFGSMMEELKSRMRSLKEQVEELDSKEKRLDHQCRVKEFESKKKEFEGELKEFESKDNKLEGKVKEFESKEKEFECQMMDFLSKQKHFESQMKEFESKKNQHESRVKEHESKEREFEDQRKELESKKKHFESQVEELKTKERQLKGQFKELESKEKQFVGRVKEFESKEKQHESRAKEHESKEREFEGQMKELESKTKQVESQVEELKTKERQLKGQVRELESKEKQFDGRVKEFESKEKQHESRVKEHESKEREFEGQGTGI*