AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0427100

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0427100 MtrunA17_Chr3g0129361 87.705 244 5 2 1 243 1 220 4.45e-159 439
Msa0427100 MtrunA17_Chr8g0383351 62.857 245 70 13 6 243 4 234 4.18e-88 260
Msa0427100 MtrunA17_Chr8g0335811 79.121 91 19 0 143 233 130 220 4.78e-48 158
Msa0427100 MtrunA17_Chr5g0418781 66.667 81 27 0 143 223 100 180 1.06e-33 122
Msa0427100 MtrunA17_Chr1g0194481 60.638 94 35 2 139 232 131 222 5.50e-32 119
Msa0427100 MtrunA17_Chr3g0106491 64.103 78 28 0 146 223 344 421 1.08e-30 118
Msa0427100 MtrunA17_Chr3g0106491 47.887 71 32 2 157 223 184 253 8.19e-15 73.2
Msa0427100 MtrunA17_Chr4g0051881 70.423 71 21 0 153 223 164 234 2.49e-30 115
Msa0427100 MtrunA17_Chr2g0294231 68.493 73 23 0 151 223 187 259 2.75e-30 115
Msa0427100 MtrunA17_Chr7g0248721 33.488 215 117 5 32 234 6 206 4.08e-30 111
Msa0427100 MtrunA17_Chr5g0432161 41.420 169 79 4 69 223 315 477 4.40e-30 117
Msa0427100 MtrunA17_Chr5g0432161 56.140 57 24 1 167 223 244 299 1.37e-14 72.8
Msa0427100 MtrunA17_Chr5g0445311 60.526 76 30 0 148 223 345 420 7.86e-30 116
Msa0427100 MtrunA17_Chr5g0445311 43.182 88 46 2 152 236 185 271 7.64e-14 70.5
Msa0427100 MtrunA17_Chr7g0270191 53.846 104 42 3 124 223 100 201 3.13e-29 111
Msa0427100 MtrunA17_Chr3g0079691 49.558 113 44 1 124 223 439 551 3.49e-29 115
Msa0427100 MtrunA17_Chr3g0079691 56.140 57 24 1 167 223 280 335 8.22e-15 73.6
Msa0427100 MtrunA17_Chr3g0101131 60.526 76 30 0 148 223 396 471 3.60e-29 115
Msa0427100 MtrunA17_Chr3g0101131 56.140 57 24 1 167 223 243 298 1.19e-14 72.8
Msa0427100 MtrunA17_Chr7g0218081 61.039 77 30 0 147 223 390 466 3.78e-29 114
Msa0427100 MtrunA17_Chr7g0218081 59.649 57 22 1 167 223 228 283 4.01e-16 77.0
Msa0427100 MtrunA17_Chr5g0418191 61.842 76 29 0 148 223 301 376 3.91e-29 113
Msa0427100 MtrunA17_Chr5g0418191 49.367 79 34 3 167 241 151 227 3.88e-15 73.9
Msa0427100 MtrunA17_Chr4g0004911 44.928 138 59 3 97 223 261 392 8.55e-29 113
Msa0427100 MtrunA17_Chr4g0004911 52.632 57 27 0 167 223 184 240 4.01e-15 74.3
Msa0427100 MtrunA17_Chr5g0443131 66.197 71 24 0 153 223 143 213 1.22e-28 110
Msa0427100 MtrunA17_Chr4g0068541 67.123 73 24 0 151 223 192 264 1.67e-28 111
Msa0427100 MtrunA17_Chr4g0042831 59.211 76 31 0 148 223 259 334 3.81e-28 110
Msa0427100 MtrunA17_Chr4g0042831 54.386 57 26 0 167 223 145 201 1.32e-14 72.4
Msa0427100 MtrunA17_Chr7g0224801 63.768 69 25 0 155 223 81 149 6.08e-28 104
Msa0427100 MtrunA17_Chr7g0249301 56.627 83 36 0 141 223 266 348 3.98e-27 107
Msa0427100 MtrunA17_Chr7g0249301 52.381 63 29 1 165 227 60 121 3.01e-15 74.3
Msa0427100 MtrunA17_Chr7g0249311 55.422 83 37 0 141 223 366 448 4.99e-27 108
Msa0427100 MtrunA17_Chr7g0249311 55.172 58 25 1 167 224 179 235 1.13e-15 75.9
Msa0427100 MtrunA17_Chr7g0243891 59.211 76 31 0 148 223 355 430 1.07e-26 107
Msa0427100 MtrunA17_Chr7g0243891 50.000 76 35 2 167 240 216 290 4.90e-15 73.9
Msa0427100 MtrunA17_Chr1g0150801 58.442 77 31 1 147 223 83 158 1.30e-26 101
Msa0427100 MtrunA17_Chr8g0386241 45.918 98 51 2 145 242 81 176 1.25e-25 99.0
Msa0427100 MtrunA17_Chr1g0188941 56.579 76 33 0 148 223 32 107 3.15e-25 95.9
Msa0427100 MtrunA17_Chr3g0129321 57.895 76 31 1 153 227 104 179 3.94e-25 98.6
Msa0427100 MtrunA17_Chr7g0263531 56.944 72 31 0 152 223 346 417 9.26e-24 99.0
Msa0427100 MtrunA17_Chr7g0263531 57.143 56 23 1 168 223 190 244 1.46e-14 72.4
Msa0427100 MtrunA17_Chr1g0189391 47.727 88 45 1 154 240 84 171 2.25e-22 93.6
Msa0427100 MtrunA17_Chr8g0383251 42.424 99 51 1 131 223 66 164 2.56e-22 90.5
Msa0427100 MtrunA17_Chr7g0238921 45.361 97 52 1 128 223 84 180 2.26e-21 90.9
Msa0427100 MtrunA17_Chr5g0447701 51.351 74 36 0 152 225 237 310 5.38e-21 90.5
Msa0427100 MtrunA17_Chr1g0147881 36.735 147 74 4 86 231 199 327 1.41e-20 89.0
Msa0427100 MtrunA17_Chr2g0322391 46.067 89 46 2 150 236 332 420 1.60e-19 87.0
Msa0427100 MtrunA17_Chr6g0485431 48.611 72 36 1 153 223 140 211 1.68e-19 86.3
Msa0427100 MtrunA17_Chr4g0074001 49.315 73 37 0 151 223 343 415 1.79e-19 87.0
Msa0427100 MtrunA17_Chr4g0060271 47.368 76 39 1 150 224 238 313 4.00e-19 85.9
Msa0427100 MtrunA17_Chr4g0075201 48.000 75 38 1 150 223 250 324 2.27e-18 83.6
Msa0427100 MtrunA17_Chr4g0053281 45.455 88 44 2 140 226 242 326 2.73e-18 82.4
Msa0427100 MtrunA17_Chr3g0139021 46.988 83 40 3 142 223 292 371 2.74e-18 83.2
Msa0427100 MtrunA17_Chr5g0401821 45.455 88 44 2 140 226 175 259 3.18e-18 81.3
Msa0427100 MtrunA17_Chr3g0099641 44.737 76 41 1 150 224 234 309 3.51e-18 83.2
Msa0427100 MtrunA17_Chr2g0288871 46.667 75 39 1 150 223 288 362 3.54e-18 83.2
Msa0427100 MtrunA17_Chr7g0270831 47.297 74 38 1 151 223 200 273 6.19e-18 82.0
Msa0427100 MtrunA17_Chr2g0333851 46.154 78 39 2 149 223 149 226 1.02e-17 80.5
Msa0427100 MtrunA17_Chr4g0071521 37.500 112 55 4 114 224 206 303 1.32e-16 77.4
Msa0427100 MtrunA17_Chr7g0216891 47.887 71 36 1 154 223 206 276 1.57e-16 78.6
Msa0427100 MtrunA17_Chr7g0228941 52.459 61 28 1 164 223 49 109 1.88e-16 73.2
Msa0427100 MtrunA17_Chr4g0025061 45.882 85 44 2 154 236 347 431 2.18e-16 78.2
Msa0427100 MtrunA17_Chr2g0302391 34.014 147 87 4 99 242 150 289 3.91e-16 77.0
Msa0427100 MtrunA17_Chr1g0150281 52.632 57 26 1 168 223 141 197 4.05e-16 75.9
Msa0427100 MtrunA17_Chr4g0051181 44.595 74 40 1 151 223 227 300 1.00e-15 75.9
Msa0427100 MtrunA17_Chr3g0136961 50.000 60 29 1 166 224 137 196 1.01e-15 74.7
Msa0427100 MtrunA17_Chr1g0184691 40.476 84 46 2 142 224 271 351 1.24e-15 75.1
Msa0427100 MtrunA17_Chr1g0150271 44.615 65 35 1 165 228 99 163 1.80e-15 73.6
Msa0427100 MtrunA17_Chr8g0348311 37.500 120 63 6 124 239 120 231 4.47e-15 73.6
Msa0427100 MtrunA17_Chr8g0387981 53.125 64 27 1 167 227 132 195 9.00e-15 72.8
Msa0427100 MtrunA17_Chr4g0001361 43.478 69 38 1 165 232 160 228 9.72e-15 72.4
Msa0427100 MtrunA17_Chr3g0126391 53.333 60 25 1 166 222 132 191 1.13e-14 72.4
Msa0427100 MtrunA17_Chr5g0447711 43.243 74 42 0 152 225 215 288 3.93e-14 70.5
Msa0427100 MtrunA17_Chr7g0275531 40.196 102 50 3 125 222 82 176 9.94e-14 69.3
Msa0427100 MtrunA17_Chr5g0432071 52.632 57 26 1 167 223 104 159 1.20e-13 67.8
Msa0427100 MtrunA17_Chr4g0025051 42.353 85 47 2 154 236 322 406 1.74e-13 69.3
Msa0427100 MtrunA17_Chr7g0244981 50.847 59 26 1 167 222 122 180 2.13e-13 68.2
Msa0427100 MtrunA17_Chr2g0315381 50.820 61 27 1 165 222 142 202 4.04e-13 67.8
Msa0427100 MtrunA17_Chr2g0315361 39.362 94 51 3 132 222 116 206 5.20e-13 67.4
Msa0427100 MtrunA17_Chr8g0379461 48.276 58 29 1 168 224 77 134 8.47e-13 65.9
Msa0427100 MtrunA17_Chr2g0293481 32.673 101 60 2 131 223 224 324 1.39e-12 66.6
Msa0427100 MtrunA17_Chr2g0289181 40.845 71 39 2 155 224 4 72 1.54e-12 65.1
Msa0427100 MtrunA17_Chr8g0387501 46.667 60 31 1 165 223 127 186 1.88e-12 65.5
Msa0427100 MtrunA17_Chr2g0284321 46.552 58 30 1 168 224 36 93 1.91e-12 64.7
Msa0427100 MtrunA17_Chr8g0334541 38.372 86 49 2 145 227 82 166 3.98e-12 64.3
Msa0427100 MtrunA17_Chr7g0244971 40.000 85 47 2 141 222 98 181 5.05e-12 64.3
Msa0427100 MtrunA17_Chr7g0248691 46.053 76 37 3 168 239 155 230 5.17e-12 64.7
Msa0427100 MtrunA17_Chr7g0270051 49.123 57 28 1 168 223 54 110 6.97e-12 63.5
Msa0427100 MtrunA17_Chr8g0347251 41.096 73 40 1 166 235 135 207 7.55e-12 64.3
Msa0427100 MtrunA17_Chr8g0350621 44.068 59 30 1 167 222 111 169 1.56e-11 62.8
Msa0427100 MtrunA17_Chr2g0319961 46.552 58 30 1 168 224 81 138 4.01e-11 61.6
Msa0427100 MtrunA17_Chr1g0202461 36.709 79 48 2 147 224 242 319 7.82e-11 61.2
Msa0427100 MtrunA17_Chr3g0128671 41.250 80 37 3 147 222 112 185 8.38e-11 60.8
Msa0427100 MtrunA17_Chr1g0188961 49.091 55 28 0 187 241 3 57 8.91e-11 56.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0427100 AT4G39410.1 70.896 134 23 3 126 243 171 304 5.97e-62 196
Msa0427100 AT2G44745.1 82.558 86 15 0 143 228 121 206 5.91e-48 158
Msa0427100 AT1G69310.4 63.218 87 31 1 137 223 118 203 1.28e-34 125
Msa0427100 AT1G69310.2 63.218 87 31 1 137 223 118 203 1.28e-34 125
Msa0427100 AT1G69310.1 63.218 87 31 1 137 223 118 203 1.28e-34 125
Msa0427100 AT5G41570.1 57.843 102 39 2 131 232 65 162 8.55e-33 117
Msa0427100 AT1G64000.1 62.222 90 33 1 143 232 90 178 1.24e-32 118
Msa0427100 AT2G46130.1 59.770 87 34 1 148 234 11 96 5.13e-32 113
Msa0427100 AT5G49520.1 68.493 73 23 0 151 223 205 277 1.07e-30 117
Msa0427100 AT5G07100.2 51.923 104 44 1 120 223 100 197 1.33e-30 113
Msa0427100 AT5G07100.2 47.826 69 36 0 155 223 12 80 9.64e-15 71.2
Msa0427100 AT5G07100.4 51.923 104 44 1 120 223 100 197 1.33e-30 113
Msa0427100 AT5G07100.4 47.826 69 36 0 155 223 12 80 9.64e-15 71.2
Msa0427100 AT5G07100.5 51.923 104 44 1 120 223 100 197 1.33e-30 113
Msa0427100 AT5G07100.5 47.826 69 36 0 155 223 12 80 9.64e-15 71.2
Msa0427100 AT5G07100.3 51.923 104 44 1 120 223 100 197 1.33e-30 113
Msa0427100 AT5G07100.3 47.826 69 36 0 155 223 12 80 9.64e-15 71.2
Msa0427100 AT4G18170.1 59.375 96 37 2 133 227 139 233 1.54e-30 115
Msa0427100 AT5G07100.1 51.923 104 44 1 120 223 193 290 2.21e-30 115
Msa0427100 AT5G07100.1 47.826 69 36 0 155 223 105 173 1.05e-14 72.4
Msa0427100 AT5G26170.1 66.216 74 25 0 154 227 100 173 2.91e-30 111
Msa0427100 AT4G26640.5 53.846 91 35 1 140 223 171 261 2.48e-29 113
Msa0427100 AT4G26640.5 54.237 59 26 1 165 223 33 90 8.08e-14 70.5
Msa0427100 AT4G26640.6 53.846 91 35 1 140 223 171 261 2.48e-29 113
Msa0427100 AT4G26640.6 54.237 59 26 1 165 223 33 90 8.08e-14 70.5
Msa0427100 AT4G26640.4 53.846 91 35 1 140 223 171 261 2.48e-29 113
Msa0427100 AT4G26640.4 54.237 59 26 1 165 223 33 90 8.08e-14 70.5
Msa0427100 AT4G26640.3 53.846 91 35 1 140 223 171 261 2.48e-29 113
Msa0427100 AT4G26640.3 54.237 59 26 1 165 223 33 90 8.08e-14 70.5
Msa0427100 AT1G13960.2 63.158 76 28 0 148 223 237 312 2.74e-29 113
Msa0427100 AT1G13960.2 55.932 59 25 1 167 225 76 133 9.40e-15 73.2
Msa0427100 AT1G13960.1 63.158 76 28 0 148 223 390 465 3.04e-29 115
Msa0427100 AT1G13960.1 55.932 59 25 1 167 225 229 286 3.04e-15 75.1
Msa0427100 AT2G03340.1 63.158 76 28 0 148 223 396 471 3.30e-29 115
Msa0427100 AT2G03340.1 56.140 57 24 1 167 223 250 305 6.85e-14 70.9
Msa0427100 AT4G26640.7 53.846 91 35 1 140 223 307 397 3.49e-29 115
Msa0427100 AT4G26640.7 54.237 59 26 1 165 223 169 226 4.86e-14 71.6
Msa0427100 AT4G26640.1 53.846 91 35 1 140 223 275 365 4.17e-29 114
Msa0427100 AT4G26640.1 54.237 59 26 1 165 223 137 194 6.00e-14 71.2
Msa0427100 AT4G26640.2 53.846 91 35 1 140 223 347 437 5.15e-29 114
Msa0427100 AT4G26640.2 54.237 59 26 1 165 223 209 266 5.36e-14 71.2
Msa0427100 AT1G29860.1 65.753 73 25 0 151 223 120 192 5.25e-29 110
Msa0427100 AT1G69310.3 58.621 87 31 2 137 223 118 199 5.76e-29 110
Msa0427100 AT2G47260.1 61.176 85 32 1 139 223 147 230 6.46e-29 111
Msa0427100 AT3G01080.2 55.435 92 37 1 136 223 309 400 8.30e-29 113
Msa0427100 AT3G01080.2 56.140 57 24 1 167 223 205 260 3.23e-15 74.7
Msa0427100 AT5G56270.1 63.158 76 28 0 148 223 468 543 1.01e-28 114
Msa0427100 AT5G56270.1 50.769 65 31 1 159 223 265 328 1.97e-15 75.9
Msa0427100 AT5G13080.1 64.286 70 25 0 154 223 54 123 1.13e-28 106
Msa0427100 AT3G01080.1 55.435 92 37 1 136 223 271 362 1.36e-28 112
Msa0427100 AT3G01080.1 56.140 57 24 1 167 223 167 222 6.20e-15 73.9
Msa0427100 AT2G38470.1 63.158 76 28 0 148 223 343 418 1.69e-28 113
Msa0427100 AT2G38470.1 54.386 57 25 1 167 223 184 239 1.62e-13 70.1
Msa0427100 AT2G30250.1 58.824 85 35 0 148 232 309 393 5.01e-28 110
Msa0427100 AT2G30250.1 47.222 72 36 2 167 238 166 235 2.08e-12 66.2
Msa0427100 AT5G46350.1 64.789 71 25 0 153 223 169 239 3.18e-27 107
Msa0427100 AT4G26440.1 59.211 76 31 0 148 223 353 428 6.53e-27 108
Msa0427100 AT4G26440.1 30.698 215 97 7 21 224 61 234 1.93e-16 78.6
Msa0427100 AT3G01970.1 53.409 88 38 1 154 238 52 139 8.09e-27 101
Msa0427100 AT2G46130.2 55.172 87 34 2 148 234 11 92 1.59e-26 99.4
Msa0427100 AT3G62340.1 59.036 83 32 1 141 223 94 174 6.93e-25 99.8
Msa0427100 AT5G64810.1 58.571 70 29 0 154 223 97 166 7.42e-25 97.8
Msa0427100 AT2G37260.2 62.903 62 23 0 162 223 262 323 4.99e-23 96.3
Msa0427100 AT2G37260.2 49.333 75 36 2 168 241 84 157 1.06e-13 70.1
Msa0427100 AT2G37260.3 62.903 62 23 0 162 223 264 325 5.22e-23 96.3
Msa0427100 AT2G37260.3 49.333 75 36 2 168 241 86 159 1.08e-13 70.1
Msa0427100 AT2G37260.1 65.000 60 21 0 164 223 346 405 9.39e-23 96.3
Msa0427100 AT2G37260.1 49.333 75 36 2 168 241 166 239 9.35e-14 70.5
Msa0427100 AT2G04880.2 42.202 109 50 2 123 223 236 339 1.06e-21 93.6
Msa0427100 AT2G04880.2 55.932 59 25 1 165 223 109 166 2.67e-14 72.0
Msa0427100 AT5G15130.2 40.800 125 51 4 105 224 137 243 1.38e-21 93.6
Msa0427100 AT2G04880.1 42.202 109 50 2 123 223 260 363 1.42e-21 93.2
Msa0427100 AT2G04880.1 55.932 59 25 1 165 223 109 166 2.97e-14 72.0
Msa0427100 AT5G15130.1 40.800 125 51 4 105 224 179 285 1.61e-21 93.2
Msa0427100 AT1G55600.1 50.000 80 40 0 144 223 284 363 4.25e-21 92.0
Msa0427100 AT2G21900.1 46.667 90 42 3 143 226 80 169 2.51e-20 85.9
Msa0427100 AT2G23320.1 51.136 88 39 3 140 226 216 300 4.63e-19 84.7
Msa0427100 AT4G31550.1 40.952 105 57 3 140 243 222 322 1.28e-18 83.6
Msa0427100 AT4G31550.2 40.952 105 57 3 140 243 221 321 1.37e-18 83.6
Msa0427100 AT4G30935.1 50.000 70 35 0 154 223 318 387 1.78e-18 84.3
Msa0427100 AT4G04450.2 49.333 75 37 1 150 223 181 255 2.57e-18 83.6
Msa0427100 AT4G04450.1 49.333 75 37 1 150 223 275 349 6.57e-18 82.8
Msa0427100 AT5G43290.1 50.704 71 34 1 154 223 100 170 1.14e-17 80.5
Msa0427100 AT1G62300.1 48.000 75 38 1 150 223 295 369 1.41e-17 82.0
Msa0427100 AT4G22070.4 48.000 75 38 1 150 223 280 354 1.85e-17 81.6
Msa0427100 AT4G22070.3 48.000 75 38 1 150 223 280 354 1.85e-17 81.6
Msa0427100 AT4G22070.2 48.000 75 38 1 150 223 280 354 1.85e-17 81.6
Msa0427100 AT4G22070.1 48.000 75 38 1 150 223 280 354 1.85e-17 81.6
Msa0427100 AT2G25000.2 51.667 60 28 1 166 224 102 161 2.31e-17 78.6
Msa0427100 AT2G25000.4 51.667 60 28 1 166 224 102 161 2.31e-17 78.6
Msa0427100 AT2G25000.3 50.820 61 29 1 165 224 123 183 3.50e-17 78.6
Msa0427100 AT4G01720.1 48.649 74 37 1 151 223 223 296 4.53e-17 80.1
Msa0427100 AT4G31800.2 51.667 60 28 1 165 223 109 168 4.58e-17 78.2
Msa0427100 AT2G25000.1 51.667 60 28 1 166 224 145 204 5.11e-17 78.6
Msa0427100 AT5G28650.1 43.023 86 45 2 140 224 238 320 6.13e-17 79.0
Msa0427100 AT2G30590.1 44.706 85 43 2 140 223 289 370 7.00e-17 79.3
Msa0427100 AT4G31800.1 51.667 60 28 1 165 223 174 233 7.71e-17 78.6
Msa0427100 AT2G24570.1 38.938 113 56 3 112 223 200 300 1.71e-16 77.8
Msa0427100 AT1G18860.1 44.000 75 41 1 150 223 222 296 2.30e-16 78.2
Msa0427100 AT3G04670.1 41.860 86 46 2 140 224 238 320 4.09e-16 76.6
Msa0427100 AT4G24240.1 41.860 86 46 2 140 224 257 339 9.08e-16 75.9
Msa0427100 AT3G01080.3 56.140 57 24 1 167 223 205 260 9.69e-16 75.5
Msa0427100 AT1G68150.1 38.776 98 56 2 130 223 195 292 1.38e-15 75.5
Msa0427100 AT1G80840.1 44.828 87 43 4 142 223 117 203 2.27e-15 74.3
Msa0427100 AT4G01250.1 42.308 78 42 2 147 223 110 185 1.52e-14 72.0
Msa0427100 AT1G69810.2 43.421 76 41 2 150 223 128 203 5.31e-14 70.9
Msa0427100 AT1G66550.1 38.776 98 55 2 130 222 69 166 6.81e-14 69.7
Msa0427100 AT1G69810.1 43.421 76 41 2 150 223 186 261 6.82e-14 70.9
Msa0427100 AT1G29280.1 38.202 89 44 2 136 223 53 131 1.15e-13 68.9
Msa0427100 AT1G66550.2 47.458 59 28 1 167 222 103 161 2.28e-13 68.2
Msa0427100 AT3G56400.1 33.654 104 65 2 135 234 87 190 2.88e-13 68.2
Msa0427100 AT1G66560.1 47.458 59 28 1 167 222 103 161 3.86e-13 67.4
Msa0427100 AT2G34830.1 38.202 89 52 3 138 223 184 272 8.37e-13 67.8
Msa0427100 AT2G34830.2 38.202 89 52 3 138 223 193 281 9.69e-13 67.4
Msa0427100 AT1G66600.1 40.506 79 43 2 166 241 102 179 1.06e-12 65.9
Msa0427100 AT1G30650.1 33.333 99 58 2 133 223 176 274 1.72e-12 66.6
Msa0427100 AT5G01900.1 45.312 64 32 2 161 221 104 167 2.79e-12 65.1
Msa0427100 AT2G40740.1 50.000 58 26 1 167 221 173 230 2.91e-12 65.5
Msa0427100 AT5G52830.1 49.123 57 28 1 168 223 166 222 3.01e-12 65.9
Msa0427100 AT4G23550.1 44.262 61 33 1 164 223 137 197 3.31e-12 65.5
Msa0427100 AT2G40740.3 50.000 58 26 1 167 221 182 239 3.62e-12 65.1
Msa0427100 AT4G12020.2 43.478 69 38 1 166 234 467 534 3.65e-12 66.2
Msa0427100 AT4G12020.2 70.000 40 12 0 148 187 622 661 7.49e-12 65.5
Msa0427100 AT4G12020.3 43.478 69 38 1 166 234 467 534 3.68e-12 66.2
Msa0427100 AT4G12020.3 70.000 40 12 0 148 187 622 661 7.42e-12 65.5
Msa0427100 AT4G12020.6 43.478 69 38 1 166 234 467 534 3.73e-12 66.2
Msa0427100 AT4G12020.6 70.000 40 12 0 148 187 622 661 7.44e-12 65.5
Msa0427100 AT4G12020.8 43.478 69 38 1 166 234 467 534 3.73e-12 66.2
Msa0427100 AT4G12020.8 70.000 40 12 0 148 187 622 661 7.44e-12 65.5
Msa0427100 AT4G12020.4 43.478 69 38 1 166 234 467 534 3.76e-12 66.2
Msa0427100 AT4G12020.4 70.000 40 12 0 148 187 622 661 7.85e-12 65.1
Msa0427100 AT4G12020.10 43.478 69 38 1 166 234 467 534 3.86e-12 66.2
Msa0427100 AT4G12020.10 70.000 40 12 0 148 187 622 661 7.70e-12 65.5
Msa0427100 AT4G12020.7 43.478 69 38 1 166 234 467 534 3.95e-12 66.2
Msa0427100 AT4G12020.7 70.000 40 12 0 148 187 622 661 7.81e-12 65.1
Msa0427100 AT4G12020.5 43.478 69 38 1 166 234 400 467 3.96e-12 66.2
Msa0427100 AT4G12020.5 70.000 40 12 0 148 187 555 594 8.58e-12 65.1
Msa0427100 AT4G12020.1 43.478 69 38 1 166 234 467 534 4.07e-12 66.2
Msa0427100 AT4G12020.1 70.000 40 12 0 148 187 622 661 7.88e-12 65.1
Msa0427100 AT4G12020.9 43.478 69 38 1 166 234 467 534 4.07e-12 66.2
Msa0427100 AT4G12020.9 70.000 40 12 0 148 187 622 661 7.88e-12 65.1
Msa0427100 AT4G12020.11 43.478 69 38 1 166 234 467 534 5.72e-12 65.5
Msa0427100 AT4G12020.11 70.000 40 12 0 148 187 622 661 9.91e-12 65.1
Msa0427100 AT1G80590.1 46.552 58 28 1 168 222 86 143 1.76e-11 62.4
Msa0427100 AT5G45050.4 35.165 91 58 1 134 223 1008 1098 3.08e-11 63.5
Msa0427100 AT5G22570.1 46.552 58 28 1 168 222 111 168 3.20e-11 62.4
Msa0427100 AT5G24110.1 39.759 83 38 2 165 235 111 193 3.42e-11 62.4
Msa0427100 AT5G45050.1 35.165 91 58 1 134 223 1147 1237 3.46e-11 63.2
Msa0427100 AT5G45050.2 35.165 91 58 1 134 223 1119 1209 3.65e-11 63.2
Msa0427100 AT2G40750.1 34.188 117 69 2 120 228 100 216 5.21e-11 62.0

Find 88 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATTATCTATACCTATTCT+AGG 0.247192 3_2:-77765416 Msa0427100:three_prime_UTR
AATTAGTGAAAAGTTGAAAA+TGG 0.254141 3_2:+77765338 None:intergenic
GATCATCTTACTTCTAGTTT+TGG 0.279525 3_2:-77767408 Msa0427100:CDS
GGTACCACTTCTCCAACTTT+AGG 0.294988 3_2:-77767772 Msa0427100:five_prime_UTR
TCAGCAAAATTTGCAGCTTC+AGG 0.298513 3_2:+77767474 None:intergenic
ACTAGCTAGCTACAAGTTAA+TGG 0.299451 3_2:-77767858 Msa0427100:five_prime_UTR
TATGTGGTTATCACCATTCT+TGG 0.301275 3_2:+77765646 None:intergenic
GATTCTTCAAGTTCATTTGA+TGG 0.326616 3_2:+77765601 None:intergenic
AAACATGACCTTACCTCCTT+TGG 0.332541 3_2:-77767556 Msa0427100:CDS
CTGAACTTACTAATTTCTTC+TGG 0.337305 3_2:-77765567 Msa0427100:CDS
ACAGATCCAAAGTGAATTCA+TGG 0.376673 3_2:-77767359 Msa0427100:intron
CTTTGGATCTGTTCAAAGAA+AGG 0.382028 3_2:+77767370 None:intergenic
ACCAACATATATTTCTCTCT+TGG 0.391421 3_2:-77765525 Msa0427100:three_prime_UTR
GGTTGTAGATCTAGAGGGTT+GGG 0.401130 3_2:-77767751 Msa0427100:five_prime_UTR
AATGGGAGGAGCAGATAGAA+AGG 0.414527 3_2:+77765356 None:intergenic
ATTAGTGAAAAGTTGAAAAT+GGG 0.419690 3_2:+77765339 None:intergenic
AAAAGGCAAAGCAATGGAAA+AGG 0.419693 3_2:-77767911 None:intergenic
AAAGGAGGTAAGGTCATGTT+TGG 0.420084 3_2:+77767558 None:intergenic
GTTGGGTAGAGATTATAGAT+TGG 0.424727 3_2:-77767734 Msa0427100:five_prime_UTR
TCATGAGATCCCTATGCAAA+TGG 0.425861 3_2:-77767601 Msa0427100:CDS
CCATAGCTTGTTTGATCAAG+AGG 0.452922 3_2:-77767628 Msa0427100:CDS
TTCTGAAAAGAAAACTCTAT+AGG 0.453642 3_2:-77767793 Msa0427100:five_prime_UTR
AACATATATTTCTCTCTTGG+AGG 0.453995 3_2:-77765522 Msa0427100:three_prime_UTR
TATGATTGAATTTAGGGCAT+GGG 0.455045 3_2:-77767008 Msa0427100:intron
CATCATCATAATCAACAACT+AGG 0.465924 3_2:-77766929 Msa0427100:CDS
TACCTTTCAAAGATTGATGA+TGG 0.466958 3_2:+77767526 None:intergenic
TGAAGAAAATGAAGGGAAGA+AGG 0.467112 3_2:-77766889 Msa0427100:CDS
CATGAGATCCCTATGCAAAT+GGG 0.477999 3_2:-77767600 Msa0427100:CDS
ATCTCACCATGAATTCACTT+TGG 0.483028 3_2:+77767353 None:intergenic
GAAGGAAGGTGAGGGAGCCT+AGG 0.492345 3_2:-77766871 Msa0427100:CDS
CTAGATCTACAACCTAAAGT+TGG 0.495671 3_2:+77767760 None:intergenic
AAAGGCAAAGCAATGGAAAA+GGG 0.497716 3_2:-77767910 None:intergenic
TATGCATGATTTCCTAGAAT+AGG 0.499233 3_2:+77765404 None:intergenic
CATAAAGATGAAGAAAATGA+AGG 0.501193 3_2:-77766897 Msa0427100:CDS
AGAAGTAACTGATAGCTTGA+TGG 0.501267 3_2:-77766984 Msa0427100:CDS
AAGGTCATGTTTGGAGGGAA+AGG 0.503288 3_2:+77767567 None:intergenic
TTGAACAGCTGTTGCAAGGA+GGG 0.504686 3_2:+77767449 None:intergenic
AGCAATGGAAAAGGGAAAGT+TGG 0.504789 3_2:-77767902 None:intergenic
ATTAAGACTGAATAATTAAG+TGG 0.508809 3_2:-77765476 Msa0427100:three_prime_UTR
TGAAGGGAAGAAGGAAGGTG+AGG 0.508932 3_2:-77766880 Msa0427100:CDS
ATCTGTTCAAAGAAAGGAGT+TGG 0.513213 3_2:+77767376 None:intergenic
CCTCTTGATCAAACAAGCTA+TGG 0.514036 3_2:+77767628 None:intergenic
GAAGTAACTGATAGCTTGAT+GGG 0.521967 3_2:-77766983 Msa0427100:CDS
AGCATGTCTTCCTTCATATG+TGG 0.525478 3_2:+77765630 None:intergenic
GCAATTATCCAAAGGAGGTA+AGG 0.525699 3_2:+77767548 None:intergenic
GAAAATGAAGGGAAGAAGGA+AGG 0.526149 3_2:-77766885 Msa0427100:CDS
AAAGAAACGTGTGGAGCGAT+TGG 0.527506 3_2:-77765677 Msa0427100:CDS
ATGATTGAATTTAGGGCATG+GGG 0.530214 3_2:-77767007 Msa0427100:intron
GAAGGGAAGAAGGAAGGTGA+GGG 0.532669 3_2:-77766879 Msa0427100:CDS
TCTCCTTCTCTATATAACCT+TGG 0.538852 3_2:+77767707 None:intergenic
GGAGGTAAGGTCATGTTTGG+AGG 0.539020 3_2:+77767561 None:intergenic
GGTTACAAGTGGAGGAAGTA+CGG 0.540793 3_2:-77766806 Msa0427100:CDS
GACTGAATAATTAAGTGGTG+TGG 0.542090 3_2:-77765471 Msa0427100:three_prime_UTR
ATCATCATAATCAACAACTA+GGG 0.543445 3_2:-77766928 Msa0427100:CDS
TGCCATCATCAATCTTTGAA+AGG 0.544773 3_2:-77767528 Msa0427100:CDS
TATTGAACCCCATTTGCATA+GGG 0.544992 3_2:+77767592 None:intergenic
ACGTGTGGAGCGATTGGCTG+AGG 0.546212 3_2:-77765671 Msa0427100:CDS
ATATTGAACCCCATTTGCAT+AGG 0.547777 3_2:+77767591 None:intergenic
ATGGTGATAACCACATATGA+AGG 0.551016 3_2:-77765640 Msa0427100:CDS
CTTTAGGTTGTAGATCTAGA+GGG 0.555482 3_2:-77767756 Msa0427100:five_prime_UTR
GATTATAGATTGGATTGCCA+AGG 0.559310 3_2:-77767724 Msa0427100:five_prime_UTR
ACTTTAGGTTGTAGATCTAG+AGG 0.559824 3_2:-77767757 Msa0427100:five_prime_UTR
AGGTTGTAGATCTAGAGGGT+TGG 0.560163 3_2:-77767752 Msa0427100:five_prime_UTR
GCTTCAGGAGAAAGTGATGA+AGG 0.566189 3_2:+77767489 None:intergenic
GACGTGGATGTGTTGGATGA+TGG 0.572793 3_2:-77766827 Msa0427100:CDS
CATGAGCGACGTGGATGTGT+TGG 0.578149 3_2:-77766834 Msa0427100:CDS
GAGGTAAGGTCATGTTTGGA+GGG 0.578786 3_2:+77767562 None:intergenic
GAGGAAGTACGGACAGAAAG+TGG 0.580020 3_2:-77766795 Msa0427100:CDS
TCCAAGAGAGAAATATATGT+TGG 0.580358 3_2:+77765524 None:intergenic
ATAAAGATGAAGAAAATGAA+GGG 0.586041 3_2:-77766896 Msa0427100:CDS
ACAACCTAAAGTTGGAGAAG+TGG 0.587621 3_2:+77767768 None:intergenic
ATTGGCTGAGGATCCAAGAA+TGG 0.588263 3_2:-77765659 Msa0427100:CDS
TAAAGAACACACAGCATCCA+AGG 0.591239 3_2:-77766772 Msa0427100:intron
TTGCCAAGGTTATATAGAGA+AGG 0.592512 3_2:-77767710 Msa0427100:five_prime_UTR
CAACACATCCACGTCGCTCA+TGG 0.593426 3_2:+77766835 None:intergenic
AGATGATCTTCAAATTCTCG+TGG 0.612771 3_2:+77767423 None:intergenic
AGTGAAAAGTTGAAAATGGG+AGG 0.612976 3_2:+77765342 None:intergenic
GACAATTATCTTGTGTGCAA+CGG 0.619219 3_2:+77765704 None:intergenic
CTTCAAGACCATGAGCGACG+TGG 0.626402 3_2:-77766843 Msa0427100:CDS
TGGATGATGGTTACAAGTGG+AGG 0.635586 3_2:-77766814 Msa0427100:CDS
ATGAGATCCCTATGCAAATG+GGG 0.638441 3_2:-77767599 Msa0427100:CDS
TGATGATGGCAATTATCCAA+AGG 0.643521 3_2:+77767540 None:intergenic
ATGGTCTTGAAGCAAAACCT+AGG 0.654328 3_2:+77766854 None:intergenic
TTGTCGAGTAAAGAAACGTG+TGG 0.654452 3_2:-77765686 Msa0427100:CDS
TCATCATAATCAACAACTAG+GGG 0.662114 3_2:-77766927 Msa0427100:CDS
TGTTGGATGATGGTTACAAG+TGG 0.666245 3_2:-77766817 Msa0427100:CDS
TTTGAACAGCTGTTGCAAGG+AGG 0.670990 3_2:+77767448 None:intergenic
TGATGGCAATTATCCAAAGG+AGG 0.672690 3_2:+77767543 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTGCTTATATTTTTTTA+AGG - chr3_2:77766031-77766050 Msa0427100:intron 10.0%
!!! AATTGCTTATATTTTTTTAA+GGG - chr3_2:77766032-77766051 Msa0427100:intron 10.0%
!!! GTTTATTAGAATTTTATATT+TGG - chr3_2:77766468-77766487 Msa0427100:intron 10.0%
!!! AAAATAAATCTTAACATTTT+GGG + chr3_2:77766808-77766827 None:intergenic 10.0%
!!! TAAAATAAATCTTAACATTT+TGG + chr3_2:77766809-77766828 None:intergenic 10.0%
!! GATATGTTATATATATATGT+AGG - chr3_2:77765906-77765925 Msa0427100:intron 15.0%
!! ATTTACCTATCAAAAAATAT+AGG - chr3_2:77765994-77766013 Msa0427100:intron 15.0%
!!! ATTGCTTATATTTTTTTAAG+GGG - chr3_2:77766033-77766052 Msa0427100:intron 15.0%
!!! TAACATTATTGTTTTTTTAG+AGG + chr3_2:77767888-77767907 None:intergenic 15.0%
!! GTGGAATATTTGAAAATTTA+AGG + chr3_2:77765810-77765829 None:intergenic 20.0%
!!! ATTTGCCTATATTTTTTGAT+AGG + chr3_2:77766002-77766021 None:intergenic 20.0%
!! ATAAAGATGAAGAAAATGAA+GGG - chr3_2:77766234-77766253 Msa0427100:intron 20.0%
!! TTCTAATAAACAATAATGAG+AGG + chr3_2:77766459-77766478 None:intergenic 20.0%
!!! TATTTGGCTTATGATTATTT+TGG - chr3_2:77766484-77766503 Msa0427100:intron 20.0%
!!! TTTGATAAGTTTTCATTTGA+GGG + chr3_2:77766954-77766973 None:intergenic 20.0%
!!! TTTTGATAAGTTTTCATTTG+AGG + chr3_2:77766955-77766974 None:intergenic 20.0%
!!! TATAGTACTATTTTCCTTTT+TGG + chr3_2:77767353-77767372 None:intergenic 20.0%
!! ATTAAGACTGAATAATTAAG+TGG - chr3_2:77767654-77767673 Msa0427100:CDS 20.0%
!! ATATTATCTATACCTATTCT+AGG - chr3_2:77767714-77767733 Msa0427100:five_prime_UTR 20.0%
!! ATTAGTGAAAAGTTGAAAAT+GGG + chr3_2:77767794-77767813 None:intergenic 20.0%
!! AATTAGTGAAAAGTTGAAAA+TGG + chr3_2:77767795-77767814 None:intergenic 20.0%
!! TTCTGAAAAGAAAACTCTAT+AGG - chr3_2:77765337-77765356 Msa0427100:three_prime_UTR 25.0%
! GTTTGTGATTAATATGTAAG+TGG + chr3_2:77765973-77765992 None:intergenic 25.0%
! AAACTTAACTCTCTTTACAA+AGG + chr3_2:77766092-77766111 None:intergenic 25.0%
! GTTGGATATGATTGAATTTA+GGG - chr3_2:77766116-77766135 Msa0427100:intron 25.0%
! ATCATCATAATCAACAACTA+GGG - chr3_2:77766202-77766221 Msa0427100:intron 25.0%
!! CTTCATTTTCTTCATCTTTA+TGG + chr3_2:77766235-77766254 None:intergenic 25.0%
! CATAAAGATGAAGAAAATGA+AGG - chr3_2:77766233-77766252 Msa0427100:intron 25.0%
! AAAAGAGAGAAAATTTGAAG+TGG + chr3_2:77766399-77766418 None:intergenic 25.0%
! AATAAACAATAATGAGAGGA+GGG + chr3_2:77766455-77766474 None:intergenic 25.0%
! TAATAAACAATAATGAGAGG+AGG + chr3_2:77766456-77766475 None:intergenic 25.0%
! GGTTATACTCTAACATATAT+AGG + chr3_2:77766694-77766713 None:intergenic 25.0%
!! TTGATAAGTTTTCATTTGAG+GGG + chr3_2:77766953-77766972 None:intergenic 25.0%
! AAGTAAAAACCATCATTACT+AGG + chr3_2:77767230-77767249 None:intergenic 25.0%
! GTACAGCATAAATAAAAAAC+AGG + chr3_2:77767255-77767274 None:intergenic 25.0%
! GTATTAAGGACAAAGAAAAT+GGG + chr3_2:77767290-77767309 None:intergenic 25.0%
!!! AGTTATATAGGAAGGTATTA+AGG + chr3_2:77767304-77767323 None:intergenic 25.0%
! TAATACCTTCCTATATAACT+TGG - chr3_2:77767304-77767323 Msa0427100:intron 25.0%
!!! TTTACTTTTAGAACAAGTCT+TGG - chr3_2:77767836-77767855 Msa0427100:five_prime_UTR 25.0%
!!! TTGTTTTTGAACTTTGGTTG+AGG + chr3_2:77765303-77765322 None:intergenic 30.0%
!!! GAGAGTTTGTTTTTGAACTT+TGG + chr3_2:77765309-77765328 None:intergenic 30.0%
TACCTTTCAAAGATTGATGA+TGG + chr3_2:77765607-77765626 None:intergenic 30.0%
!!! GATCATCTTACTTCTAGTTT+TGG - chr3_2:77765722-77765741 Msa0427100:intron 30.0%
AAATATAGATACTAGCTGTC+TGG - chr3_2:77765864-77765883 Msa0427100:intron 30.0%
! GTAAAGAGAGTTAAGTTTTG+TGG - chr3_2:77766094-77766113 Msa0427100:intron 30.0%
GGTTGGATATGATTGAATTT+AGG - chr3_2:77766115-77766134 Msa0427100:intron 30.0%
! ATATGATTGAATTTAGGGCA+TGG - chr3_2:77766121-77766140 Msa0427100:intron 30.0%
! TATGATTGAATTTAGGGCAT+GGG - chr3_2:77766122-77766141 Msa0427100:intron 30.0%
CATCATCATAATCAACAACT+AGG - chr3_2:77766201-77766220 Msa0427100:intron 30.0%
TCATCATAATCAACAACTAG+GGG - chr3_2:77766203-77766222 Msa0427100:intron 30.0%
!!! TGATTATTTTGGTGCTTAAG+AGG - chr3_2:77766495-77766514 Msa0427100:intron 30.0%
!!! GATTATTTTGGTGCTTAAGA+GGG - chr3_2:77766496-77766515 Msa0427100:intron 30.0%
AGATTTCACTATATGTCTTC+TGG - chr3_2:77766552-77766571 Msa0427100:intron 30.0%
GATTTCACTATATGTCTTCT+GGG - chr3_2:77766553-77766572 Msa0427100:intron 30.0%
! AGAGTCCTAATTTTCAACAT+CGG + chr3_2:77766595-77766614 None:intergenic 30.0%
TATGCGTAATGTTGAAAGTT+AGG - chr3_2:77766626-77766645 Msa0427100:intron 30.0%
TATATACTGAATGAGTGCAA+AGG + chr3_2:77766735-77766754 None:intergenic 30.0%
! ACAATTTTGCTTAACGACAT+AGG - chr3_2:77766758-77766777 Msa0427100:intron 30.0%
! TGATAAGTTTTCATTTGAGG+GGG + chr3_2:77766952-77766971 None:intergenic 30.0%
!! AGTAAGAAGTGTCATATTGT+TGG + chr3_2:77767048-77767067 None:intergenic 30.0%
AACATTTGCTTGAATTTGTG+TGG - chr3_2:77767087-77767106 Msa0427100:intron 30.0%
ACATTTGCTTGAATTTGTGT+GGG - chr3_2:77767088-77767107 Msa0427100:intron 30.0%
GGTATTAAGGACAAAGAAAA+TGG + chr3_2:77767291-77767310 None:intergenic 30.0%
GTAATCCAAGTTATATAGGA+AGG + chr3_2:77767312-77767331 None:intergenic 30.0%
CTGTGTAATCCAAGTTATAT+AGG + chr3_2:77767316-77767335 None:intergenic 30.0%
TATGTACTTTAGCACCAAAA+AGG - chr3_2:77767336-77767355 Msa0427100:intron 30.0%
! GATTCTTCAAGTTCATTTGA+TGG + chr3_2:77767532-77767551 None:intergenic 30.0%
CTGAACTTACTAATTTCTTC+TGG - chr3_2:77767563-77767582 Msa0427100:CDS 30.0%
ACCAACATATATTTCTCTCT+TGG - chr3_2:77767605-77767624 Msa0427100:CDS 30.0%
TCCAAGAGAGAAATATATGT+TGG + chr3_2:77767609-77767628 None:intergenic 30.0%
AACATATATTTCTCTCTTGG+AGG - chr3_2:77767608-77767627 Msa0427100:CDS 30.0%
TATGCATGATTTCCTAGAAT+AGG + chr3_2:77767729-77767748 None:intergenic 30.0%
ACTAGCTAGCTACAAGTTAA+TGG - chr3_2:77765272-77765291 Msa0427100:three_prime_UTR 35.0%
CTAGATCTACAACCTAAAGT+TGG + chr3_2:77765373-77765392 None:intergenic 35.0%
!! ACTTTAGGTTGTAGATCTAG+AGG - chr3_2:77765373-77765392 Msa0427100:three_prime_UTR 35.0%
!! CTTTAGGTTGTAGATCTAGA+GGG - chr3_2:77765374-77765393 Msa0427100:three_prime_UTR 35.0%
GTTGGGTAGAGATTATAGAT+TGG - chr3_2:77765396-77765415 Msa0427100:three_prime_UTR 35.0%
GATTATAGATTGGATTGCCA+AGG - chr3_2:77765406-77765425 Msa0427100:three_prime_UTR 35.0%
TTGCCAAGGTTATATAGAGA+AGG - chr3_2:77765420-77765439 Msa0427100:three_prime_UTR 35.0%
TCTCCTTCTCTATATAACCT+TGG + chr3_2:77765426-77765445 None:intergenic 35.0%
TATTGAACCCCATTTGCATA+GGG + chr3_2:77765541-77765560 None:intergenic 35.0%
ATATTGAACCCCATTTGCAT+AGG + chr3_2:77765542-77765561 None:intergenic 35.0%
!! TGATGATGGCAATTATCCAA+AGG + chr3_2:77765593-77765612 None:intergenic 35.0%
TGCCATCATCAATCTTTGAA+AGG - chr3_2:77765602-77765621 Msa0427100:CDS 35.0%
AGATGATCTTCAAATTCTCG+TGG + chr3_2:77765710-77765729 None:intergenic 35.0%
!!! CATCTTACTTCTAGTTTTGG+AGG - chr3_2:77765725-77765744 Msa0427100:intron 35.0%
ATCTGTTCAAAGAAAGGAGT+TGG + chr3_2:77765757-77765776 None:intergenic 35.0%
CTTTGGATCTGTTCAAAGAA+AGG + chr3_2:77765763-77765782 None:intergenic 35.0%
ACAGATCCAAAGTGAATTCA+TGG - chr3_2:77765771-77765790 Msa0427100:intron 35.0%
ATCTCACCATGAATTCACTT+TGG + chr3_2:77765780-77765799 None:intergenic 35.0%
!! AGAGAGTTAAGTTTTGTGGT+TGG - chr3_2:77766098-77766117 Msa0427100:intron 35.0%
! ATGATTGAATTTAGGGCATG+GGG - chr3_2:77766123-77766142 Msa0427100:intron 35.0%
AGAAGTAACTGATAGCTTGA+TGG - chr3_2:77766146-77766165 Msa0427100:intron 35.0%
GAAGTAACTGATAGCTTGAT+GGG - chr3_2:77766147-77766166 Msa0427100:intron 35.0%
TTGATGGGAAAAAGAAGTAG+TGG - chr3_2:77766162-77766181 Msa0427100:intron 35.0%
TGAAGAAAATGAAGGGAAGA+AGG - chr3_2:77766241-77766260 Msa0427100:intron 35.0%
GGAGATAATGAATACTACCT+TGG + chr3_2:77766378-77766397 None:intergenic 35.0%
GACAACACTGATAATCATTG+AGG - chr3_2:77766518-77766537 Msa0427100:intron 35.0%
GTTTGCCGATGTTGAAAATT+AGG - chr3_2:77766587-77766606 Msa0427100:intron 35.0%
! TTTGCACGACATGTATTTTG+TGG - chr3_2:77766862-77766881 Msa0427100:CDS 35.0%
! TTGCACGACATGTATTTTGT+GGG - chr3_2:77766863-77766882 Msa0427100:CDS 35.0%
! ATGTATTTTGTGGGTCATGA+GGG - chr3_2:77766872-77766891 Msa0427100:CDS 35.0%
CTCATAATTCATCCACCTAT+AGG + chr3_2:77766901-77766920 None:intergenic 35.0%
ACCATCATTACTAGGAGAAA+GGG + chr3_2:77767222-77767241 None:intergenic 35.0%
AACCATCATTACTAGGAGAA+AGG + chr3_2:77767223-77767242 None:intergenic 35.0%
GACAATTATCTTGTGTGCAA+CGG + chr3_2:77767429-77767448 None:intergenic 35.0%
TATGTGGTTATCACCATTCT+TGG + chr3_2:77767487-77767506 None:intergenic 35.0%
ATGGTGATAACCACATATGA+AGG - chr3_2:77767490-77767509 Msa0427100:CDS 35.0%
GACTGAATAATTAAGTGGTG+TGG - chr3_2:77767659-77767678 Msa0427100:exon 35.0%
AGTGAAAAGTTGAAAATGGG+AGG + chr3_2:77767791-77767810 None:intergenic 35.0%
ACAACCTAAAGTTGGAGAAG+TGG + chr3_2:77765365-77765384 None:intergenic 40.0%
CCTCTTGATCAAACAAGCTA+TGG + chr3_2:77765505-77765524 None:intergenic 40.0%
!! CCATAGCTTGTTTGATCAAG+AGG - chr3_2:77765502-77765521 Msa0427100:three_prime_UTR 40.0%
TCATGAGATCCCTATGCAAA+TGG - chr3_2:77765529-77765548 Msa0427100:three_prime_UTR 40.0%
CATGAGATCCCTATGCAAAT+GGG - chr3_2:77765530-77765549 Msa0427100:three_prime_UTR 40.0%
ATGAGATCCCTATGCAAATG+GGG - chr3_2:77765531-77765550 Msa0427100:three_prime_UTR 40.0%
AAAGGAGGTAAGGTCATGTT+TGG + chr3_2:77765575-77765594 None:intergenic 40.0%
AAACATGACCTTACCTCCTT+TGG - chr3_2:77765574-77765593 Msa0427100:CDS 40.0%
GCAATTATCCAAAGGAGGTA+AGG + chr3_2:77765585-77765604 None:intergenic 40.0%
TGATGGCAATTATCCAAAGG+AGG + chr3_2:77765590-77765609 None:intergenic 40.0%
TCAGCAAAATTTGCAGCTTC+AGG + chr3_2:77765659-77765678 None:intergenic 40.0%
! GTTTTTGAACAGCTGTTGCA+AGG + chr3_2:77765688-77765707 None:intergenic 40.0%
!!! CTTACTTCTAGTTTTGGAGG+AGG - chr3_2:77765728-77765747 Msa0427100:intron 40.0%
ATGGGAAAAAGAAGTAGTGG+AGG - chr3_2:77766165-77766184 Msa0427100:intron 40.0%
GAAAATGAAGGGAAGAAGGA+AGG - chr3_2:77766245-77766264 Msa0427100:intron 40.0%
! ATGGTCTTGAAGCAAAACCT+AGG + chr3_2:77766279-77766298 None:intergenic 40.0%
! TGTTGGATGATGGTTACAAG+TGG - chr3_2:77766313-77766332 Msa0427100:intron 40.0%
TAAAGAACACACAGCATCCA+AGG - chr3_2:77766358-77766377 Msa0427100:intron 40.0%
AGGAGAAACTTCTTGGTACT+TGG + chr3_2:77766715-77766734 None:intergenic 40.0%
AGTGCAAAGGAGAAACTTCT+TGG + chr3_2:77766722-77766741 None:intergenic 40.0%
TTTGCTTAACGACATAGGTG+TGG - chr3_2:77766763-77766782 Msa0427100:intron 40.0%
! CATGTATTTTGTGGGTCATG+AGG - chr3_2:77766871-77766890 Msa0427100:CDS 40.0%
! TGTATTTTGTGGGTCATGAG+GGG - chr3_2:77766873-77766892 Msa0427100:CDS 40.0%
TGTGGGAGCTAATAAAAGTG+TGG - chr3_2:77767105-77767124 Msa0427100:intron 40.0%
! GTGGGAGCTAATAAAAGTGT+GGG - chr3_2:77767106-77767125 Msa0427100:intron 40.0%
! TGGGAGCTAATAAAAGTGTG+GGG - chr3_2:77767107-77767126 Msa0427100:intron 40.0%
ACCCTTTCTCCTAGTAATGA+TGG - chr3_2:77767218-77767237 Msa0427100:intron 40.0%
AACGGTAGTAGCTTCTACAA+AGG + chr3_2:77767411-77767430 None:intergenic 40.0%
TTGTCGAGTAAAGAAACGTG+TGG - chr3_2:77767444-77767463 Msa0427100:CDS 40.0%
AGCATGTCTTCCTTCATATG+TGG + chr3_2:77767503-77767522 None:intergenic 40.0%
GGTACCACTTCTCCAACTTT+AGG - chr3_2:77765358-77765377 Msa0427100:three_prime_UTR 45.0%
AGGTTGTAGATCTAGAGGGT+TGG - chr3_2:77765378-77765397 Msa0427100:three_prime_UTR 45.0%
GGTTGTAGATCTAGAGGGTT+GGG - chr3_2:77765379-77765398 Msa0427100:three_prime_UTR 45.0%
AAGGTCATGTTTGGAGGGAA+AGG + chr3_2:77765566-77765585 None:intergenic 45.0%
GAGGTAAGGTCATGTTTGGA+GGG + chr3_2:77765571-77765590 None:intergenic 45.0%
GCTTCAGGAGAAAGTGATGA+AGG + chr3_2:77765644-77765663 None:intergenic 45.0%
TTGAACAGCTGTTGCAAGGA+GGG + chr3_2:77765684-77765703 None:intergenic 45.0%
TTTGAACAGCTGTTGCAAGG+AGG + chr3_2:77765685-77765704 None:intergenic 45.0%
!!! ACTTCTAGTTTTGGAGGAGG+AGG - chr3_2:77765731-77765750 Msa0427100:intron 45.0%
GCTATAGTTCACATGCATGG+TGG + chr3_2:77765829-77765848 None:intergenic 45.0%
GTGGCTATAGTTCACATGCA+TGG + chr3_2:77765832-77765851 None:intergenic 45.0%
! TGGATGATGGTTACAAGTGG+AGG - chr3_2:77766316-77766335 Msa0427100:intron 45.0%
GGTTACAAGTGGAGGAAGTA+CGG - chr3_2:77766324-77766343 Msa0427100:intron 45.0%
AAAGAAACGTGTGGAGCGAT+TGG - chr3_2:77767453-77767472 Msa0427100:CDS 45.0%
ATTGGCTGAGGATCCAAGAA+TGG - chr3_2:77767471-77767490 Msa0427100:CDS 45.0%
AATGGGAGGAGCAGATAGAA+AGG + chr3_2:77767777-77767796 None:intergenic 45.0%
!! TATATTTAATAAAAATTAAG+TGG + chr3_2:77765851-77765870 None:intergenic 5.0%
GGAGGTAAGGTCATGTTTGG+AGG + chr3_2:77765572-77765591 None:intergenic 50.0%
TGAAGGGAAGAAGGAAGGTG+AGG - chr3_2:77766250-77766269 Msa0427100:intron 50.0%
GAAGGGAAGAAGGAAGGTGA+GGG - chr3_2:77766251-77766270 Msa0427100:intron 50.0%
GACGTGGATGTGTTGGATGA+TGG - chr3_2:77766303-77766322 Msa0427100:intron 50.0%
! GAGGAAGTACGGACAGAAAG+TGG - chr3_2:77766335-77766354 Msa0427100:intron 50.0%
CTTCAAGACCATGAGCGACG+TGG - chr3_2:77766287-77766306 Msa0427100:intron 55.0%
CAACACATCCACGTCGCTCA+TGG + chr3_2:77766298-77766317 None:intergenic 55.0%
CATGAGCGACGTGGATGTGT+TGG - chr3_2:77766296-77766315 Msa0427100:intron 55.0%
TCATGAGGGGAGCCTATAGG+TGG - chr3_2:77766886-77766905 Msa0427100:CDS 55.0%
GAAGGAAGGTGAGGGAGCCT+AGG - chr3_2:77766259-77766278 Msa0427100:intron 60.0%
GGGTCATGAGGGGAGCCTAT+AGG - chr3_2:77766883-77766902 Msa0427100:CDS 60.0%
! ACGTGTGGAGCGATTGGCTG+AGG - chr3_2:77767459-77767478 Msa0427100:CDS 60.0%
! GAGGGGGAGCGTGTCGAGAT+GGG + chr3_2:77766936-77766955 None:intergenic 65.0%
! TGAGGGGGAGCGTGTCGAGA+TGG + chr3_2:77766937-77766956 None:intergenic 65.0%
! GGGGAGCGTGTCGAGATGGG+TGG + chr3_2:77766933-77766952 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 77765234 77767918 77765234 ID=Msa0427100;Name=Msa0427100
chr3_2 mRNA 77765234 77767918 77765234 ID=Msa0427100-mRNA-1;Parent=Msa0427100;Name=Msa0427100-mRNA-1;_AED=0.01;_eAED=0.01;_QI=242|1|1|1|1|1|3|330|243
chr3_2 exon 77765234 77765735 77765234 ID=Msa0427100-mRNA-1:exon:20316;Parent=Msa0427100-mRNA-1
chr3_2 exon 77766773 77767015 77766773 ID=Msa0427100-mRNA-1:exon:20315;Parent=Msa0427100-mRNA-1
chr3_2 exon 77767360 77767918 77767360 ID=Msa0427100-mRNA-1:exon:20314;Parent=Msa0427100-mRNA-1
chr3_2 five_prime_UTR 77767677 77767918 77767677 ID=Msa0427100-mRNA-1:five_prime_utr;Parent=Msa0427100-mRNA-1
chr3_2 CDS 77767360 77767676 77767360 ID=Msa0427100-mRNA-1:cds;Parent=Msa0427100-mRNA-1
chr3_2 CDS 77766773 77767015 77766773 ID=Msa0427100-mRNA-1:cds;Parent=Msa0427100-mRNA-1
chr3_2 CDS 77765564 77765735 77765564 ID=Msa0427100-mRNA-1:cds;Parent=Msa0427100-mRNA-1
chr3_2 three_prime_UTR 77765234 77765563 77765234 ID=Msa0427100-mRNA-1:three_prime_utr;Parent=Msa0427100-mRNA-1
Gene Sequence

>Msa0427100

ATGTCAACAACAAATATTGTTAATCACCATAGCTTGTTTGATCAAGAGGAAGATCATGAGATCCCTATGCAAATGGGGTTCAATATTCCTTTCCCTCCAAACATGACCTTACCTCCTTTGGATAATTGCCATCATCAATCTTTGAAAGGTATCAGTGCAATAACACCTTCATCACTTTCTCCTGAAGCTGCAAATTTTGCTGAAACCCTCCTTGCAACAGCTGTTCAAAAACCACGAGAATTTGAAGATCATCTTACTTCTAGTTTTGGAGGAGGAGGCCAACTCCTTTCTTTGAACAGATCCAAAGTGAATTCATGGGCATGGGGAGAAGTAACTGATAGCTTGATGGGAAAAAGAAGTAGTGGAGGAGATGATCAACATCATCATCATAATCAACAACTAGGGGTTTCTGCCATAAAGATGAAGAAAATGAAGGGAAGAAGGAAGGTGAGGGAGCCTAGGTTTTGCTTCAAGACCATGAGCGACGTGGATGTGTTGGATGATGGTTACAAGTGGAGGAAGTACGGACAGAAAGTGGTAAAGAACACACAGCATCCAAGAAGCTACTACCGTTGCACACAAGATAATTGTCGAGTAAAGAAACGTGTGGAGCGATTGGCTGAGGATCCAAGAATGGTGATAACCACATATGAAGGAAGACATGCTCACTCTCCATCAAATGAACTTGAAGAATCACAAACTCAATCTGAACTTACTAATTTCTTCTGGTAG
Protein sequence

>Msa0427100

MSTTNIVNHHSLFDQEEDHEIPMQMGFNIPFPPNMTLPPLDNCHHQSLKGISAITPSSLSPEAANFAETLLATAVQKPREFEDHLTSSFGGGGQLLSLNRSKVNSWAWGEVTDSLMGKRSSGGDDQHHHHNQQLGVSAIKMKKMKGRRKVREPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHAHSPSNELEESQTQSELTNFFW*