Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0135230 | XP_003592422.1 | 97.297 | 185 | 5 | 0 | 1 | 185 | 1 | 185 | 3.28e-128 | 368 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0135230 | sp|P80728|MAVI_CUCPE | 55.446 | 101 | 45 | 0 | 22 | 122 | 1 | 101 | 2.40e-39 | 132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0135230 | G7ID83 | 97.297 | 185 | 5 | 0 | 1 | 185 | 1 | 185 | 1.57e-128 | 368 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006840 | Msa0135230 | 0.801821 | 7.514558e-49 | -8.615850e-47 |
| Msa0044440 | Msa0135230 | 0.940691 | 1.513089e-100 | -8.615850e-47 |
| Msa0050530 | Msa0135230 | 0.809160 | 2.170967e-50 | -8.615850e-47 |
| Msa0088520 | Msa0135230 | 0.809910 | 1.497654e-50 | -8.615850e-47 |
| Msa0089540 | Msa0135230 | 0.812801 | 3.531138e-51 | -8.615850e-47 |
| Msa0100600 | Msa0135230 | 0.822094 | 2.847349e-53 | -8.615850e-47 |
| Msa0100890 | Msa0135230 | 0.816764 | 4.675031e-52 | -8.615850e-47 |
| Msa0130360 | Msa0135230 | 0.803983 | 2.686107e-49 | -8.615850e-47 |
| Msa0135230 | Msa0168380 | 0.807323 | 5.347109e-50 | -8.615850e-47 |
| Msa0135230 | Msa0219840 | 0.831014 | 2.122210e-55 | -8.615850e-47 |
| Msa0135230 | Msa0272790 | 0.821834 | 3.270963e-53 | -8.615850e-47 |
| Msa0135230 | Msa0297200 | 0.821560 | 3.784656e-53 | -8.615850e-47 |
| Msa0135230 | Msa0336430 | 0.810774 | 9.751482e-51 | -8.615850e-47 |
| Msa0135230 | Msa0336460 | 0.810513 | 1.110226e-50 | -8.615850e-47 |
| Msa0135230 | Msa0336520 | 0.801113 | 1.049394e-48 | -8.615850e-47 |
| Msa0135230 | Msa0421220 | -0.805339 | 1.400373e-49 | -8.615850e-47 |
| Msa0135230 | Msa0513580 | -0.823346 | 1.455045e-53 | -8.615850e-47 |
| Msa0135230 | Msa0541740 | 0.802080 | 6.648996e-49 | -8.615850e-47 |
| Msa0135230 | Msa0541880 | 0.822514 | 2.274960e-53 | -8.615850e-47 |
| Msa0135230 | Msa0541940 | 0.822114 | 2.815911e-53 | -8.615850e-47 |
| Msa0135230 | Msa0571350 | 0.801724 | 7.864860e-49 | -8.615850e-47 |
| Msa0135230 | Msa0572360 | 0.810240 | 1.271944e-50 | -8.615850e-47 |
| Msa0135230 | Msa0616230 | 0.800984 | 1.115310e-48 | -8.615850e-47 |
| Msa0135230 | Msa0660260 | 0.817168 | 3.792518e-52 | -8.615850e-47 |
| Msa0135230 | Msa0685610 | 0.829904 | 3.964668e-55 | -8.615850e-47 |
| Msa0135230 | Msa0688620 | 0.800731 | 1.255833e-48 | -8.615850e-47 |
| Msa0135230 | Msa0699560 | 0.807184 | 5.720352e-50 | -8.615850e-47 |
| Msa0135230 | Msa0706690 | 0.829069 | 6.326258e-55 | -8.615850e-47 |
| Msa0135230 | Msa0749190 | 0.800047 | 1.731345e-48 | -8.615850e-47 |
| Msa0135230 | Msa0750520 | 0.802420 | 5.657024e-49 | -8.615850e-47 |
| Msa0135230 | Msa0755480 | -0.803787 | 2.950590e-49 | -8.615850e-47 |
| Msa0135230 | Msa0876630 | 0.802128 | 6.499586e-49 | -8.615850e-47 |
| Msa0135230 | Msa0970040 | 0.837371 | 5.406276e-57 | -8.615850e-47 |
| Msa0135230 | Msa0970100 | 0.812516 | 4.077103e-51 | -8.615850e-47 |
| Msa0135230 | Msa0978980 | 0.826491 | 2.635016e-54 | -8.615850e-47 |
| Msa0135230 | Msa1071410 | 0.804466 | 2.131111e-49 | -8.615850e-47 |
| Msa0135230 | Msa1154630 | 0.813357 | 2.666631e-51 | -8.615850e-47 |
| Msa0135230 | Msa1183900 | 0.816022 | 6.849061e-52 | -8.615850e-47 |
| Msa0135230 | Msa1308860 | 0.843173 | 1.648527e-58 | -8.615850e-47 |
| Msa0135230 | Msa1343460 | 0.823557 | 1.298943e-53 | -8.615850e-47 |
| Msa0135230 | Msa1356450 | 0.840541 | 8.169812e-58 | -8.615850e-47 |
| Msa0135230 | Msa1368170 | 0.800159 | 1.642579e-48 | -8.615850e-47 |
| Msa0135230 | Msa1371270 | 0.817863 | 2.644694e-52 | -8.615850e-47 |
| Msa0135230 | Msa1377140 | 0.832745 | 7.930473e-56 | -8.615850e-47 |
| Msa0135230 | Msa1379940 | 0.800510 | 1.393278e-48 | -8.615850e-47 |
| Msa0135230 | Msa1381800 | 0.801939 | 7.106014e-49 | -8.615850e-47 |
| Msa0135230 | Msa1420830 | 0.816812 | 4.559034e-52 | -8.615850e-47 |
| Msa0135230 | Msa1430460 | -0.804708 | 1.897303e-49 | -8.615850e-47 |
| Msa0135230 | Msa1453030 | 0.834746 | 2.507571e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0135230 | MtrunA17_Chr1g0205701 | 97.297 | 185 | 5 | 0 | 1 | 185 | 1 | 185 | 3.02e-132 | 368 |
| Msa0135230 | MtrunA17_Chr5g0394321 | 70.909 | 165 | 41 | 3 | 1 | 164 | 1 | 159 | 6.22e-85 | 248 |
| Msa0135230 | MtrunA17_Chr4g0064041 | 39.264 | 163 | 89 | 3 | 1 | 157 | 1 | 159 | 3.29e-27 | 105 |
| Msa0135230 | MtrunA17_Chr4g0064041 | 46.000 | 100 | 52 | 1 | 25 | 122 | 191 | 290 | 2.08e-26 | 103 |
| Msa0135230 | MtrunA17_Chr8g0335531 | 33.540 | 161 | 88 | 6 | 12 | 162 | 11 | 162 | 4.87e-27 | 101 |
| Msa0135230 | MtrunA17_Chr2g0323021 | 37.013 | 154 | 81 | 6 | 8 | 148 | 6 | 156 | 2.92e-24 | 95.1 |
| Msa0135230 | MtrunA17_Chr7g0253761 | 36.571 | 175 | 104 | 4 | 1 | 173 | 1 | 170 | 1.10e-23 | 92.0 |
| Msa0135230 | MtrunA17_Chr1g0177341 | 38.017 | 121 | 71 | 3 | 6 | 124 | 5 | 123 | 7.66e-23 | 89.4 |
| Msa0135230 | MtrunA17_Chr1g0177331 | 38.017 | 121 | 71 | 3 | 6 | 124 | 5 | 123 | 7.66e-23 | 89.4 |
| Msa0135230 | MtrunA17_Chr7g0253681 | 38.095 | 126 | 73 | 4 | 1 | 123 | 1 | 124 | 1.30e-22 | 89.0 |
| Msa0135230 | MtrunA17_Chr3g0132431 | 36.364 | 143 | 84 | 5 | 5 | 145 | 4 | 141 | 2.31e-22 | 89.0 |
| Msa0135230 | MtrunA17_Chr7g0253701 | 36.800 | 125 | 75 | 3 | 1 | 123 | 1 | 123 | 2.65e-22 | 88.2 |
| Msa0135230 | MtrunA17_Chr7g0253671 | 36.800 | 125 | 75 | 3 | 1 | 123 | 1 | 123 | 2.65e-22 | 88.2 |
| Msa0135230 | MtrunA17_Chr3g0132441 | 41.748 | 103 | 57 | 3 | 20 | 122 | 21 | 120 | 4.64e-22 | 88.2 |
| Msa0135230 | MtrunA17_Chr4g0040291 | 30.380 | 158 | 106 | 1 | 22 | 175 | 22 | 179 | 6.25e-22 | 87.8 |
| Msa0135230 | MtrunA17_Chr8g0335571 | 36.842 | 114 | 67 | 4 | 12 | 123 | 11 | 121 | 1.16e-21 | 87.4 |
| Msa0135230 | MtrunA17_Chr2g0331181 | 33.566 | 143 | 85 | 4 | 19 | 158 | 21 | 156 | 1.42e-21 | 87.0 |
| Msa0135230 | MtrunA17_Chr2g0301431 | 37.168 | 113 | 66 | 2 | 9 | 121 | 16 | 123 | 2.77e-21 | 84.3 |
| Msa0135230 | MtrunA17_Chr3g0125761 | 38.393 | 112 | 64 | 2 | 10 | 121 | 18 | 124 | 7.29e-21 | 83.6 |
| Msa0135230 | MtrunA17_Chr1g0196801 | 34.091 | 132 | 80 | 4 | 22 | 151 | 20 | 146 | 1.29e-20 | 84.3 |
| Msa0135230 | MtrunA17_Chr6g0483981 | 34.524 | 168 | 98 | 6 | 7 | 166 | 7 | 170 | 2.11e-20 | 87.8 |
| Msa0135230 | MtrunA17_Chr7g0253641 | 41.045 | 134 | 70 | 4 | 7 | 140 | 14 | 138 | 2.18e-20 | 84.7 |
| Msa0135230 | MtrunA17_Chr7g0253731 | 35.043 | 117 | 72 | 3 | 1 | 116 | 1 | 114 | 3.00e-20 | 82.8 |
| Msa0135230 | MtrunA17_Chr3g0132511 | 36.667 | 120 | 71 | 4 | 6 | 122 | 5 | 122 | 1.02e-19 | 82.8 |
| Msa0135230 | MtrunA17_Chr1g0188981 | 35.976 | 164 | 99 | 4 | 25 | 183 | 29 | 191 | 1.28e-19 | 82.0 |
| Msa0135230 | MtrunA17_Chr8g0380901 | 32.456 | 114 | 72 | 2 | 8 | 121 | 11 | 119 | 1.51e-19 | 79.7 |
| Msa0135230 | MtrunA17_Chr3g0132701 | 36.667 | 120 | 71 | 4 | 6 | 122 | 5 | 122 | 1.68e-19 | 82.0 |
| Msa0135230 | MtrunA17_Chr1g0150131 | 35.922 | 103 | 64 | 1 | 43 | 145 | 46 | 146 | 2.38e-19 | 80.9 |
| Msa0135230 | MtrunA17_Chr3g0136871 | 31.655 | 139 | 80 | 3 | 43 | 178 | 48 | 174 | 4.98e-19 | 80.1 |
| Msa0135230 | MtrunA17_Chr1g0211101 | 32.800 | 125 | 77 | 3 | 7 | 126 | 11 | 133 | 5.37e-19 | 80.1 |
| Msa0135230 | MtrunA17_Chr6g0459441 | 35.294 | 102 | 62 | 3 | 22 | 122 | 23 | 121 | 8.27e-19 | 79.3 |
| Msa0135230 | MtrunA17_Chr3g0125791 | 39.394 | 99 | 55 | 3 | 22 | 120 | 30 | 123 | 8.77e-19 | 78.2 |
| Msa0135230 | MtrunA17_Chr3g0132411 | 34.677 | 124 | 76 | 4 | 1 | 122 | 39 | 159 | 2.66e-18 | 77.8 |
| Msa0135230 | MtrunA17_Chr8g0380711 | 35.514 | 107 | 59 | 4 | 18 | 121 | 21 | 120 | 3.80e-18 | 76.3 |
| Msa0135230 | MtrunA17_Chr8g0360371 | 29.104 | 134 | 92 | 2 | 4 | 134 | 1 | 134 | 7.12e-18 | 79.3 |
| Msa0135230 | MtrunA17_Chr2g0324721 | 30.168 | 179 | 108 | 4 | 1 | 162 | 1 | 179 | 9.76e-18 | 77.0 |
| Msa0135230 | MtrunA17_Chr4g0039721 | 35.338 | 133 | 76 | 4 | 25 | 149 | 32 | 162 | 1.48e-17 | 76.3 |
| Msa0135230 | MtrunA17_Chr4g0062341 | 33.129 | 163 | 89 | 7 | 25 | 183 | 32 | 178 | 3.20e-17 | 75.5 |
| Msa0135230 | MtrunA17_Chr4g0062311 | 33.129 | 163 | 89 | 7 | 25 | 183 | 32 | 178 | 3.20e-17 | 75.5 |
| Msa0135230 | MtrunA17_Chr7g0253631 | 38.636 | 132 | 71 | 4 | 7 | 138 | 14 | 135 | 7.40e-17 | 75.5 |
| Msa0135230 | MtrunA17_Chr4g0041811 | 32.743 | 113 | 74 | 1 | 13 | 123 | 20 | 132 | 1.04e-16 | 74.7 |
| Msa0135230 | MtrunA17_Chr6g0458331 | 37.255 | 102 | 59 | 2 | 25 | 123 | 37 | 136 | 1.29e-16 | 73.6 |
| Msa0135230 | MtrunA17_Chr6g0481491 | 33.673 | 98 | 62 | 2 | 25 | 122 | 28 | 122 | 1.33e-16 | 74.3 |
| Msa0135230 | MtrunA17_Chr8g0387804 | 30.709 | 127 | 76 | 3 | 6 | 122 | 3 | 127 | 1.34e-15 | 69.7 |
| Msa0135230 | MtrunA17_Chr4g0064031 | 34.615 | 130 | 77 | 4 | 15 | 139 | 18 | 144 | 1.78e-15 | 70.5 |
| Msa0135230 | MtrunA17_Chr1g0185541 | 45.455 | 66 | 36 | 0 | 57 | 122 | 5 | 70 | 2.82e-15 | 67.4 |
| Msa0135230 | MtrunA17_Chr6g0453921 | 30.303 | 132 | 83 | 4 | 13 | 142 | 26 | 150 | 2.87e-15 | 70.1 |
| Msa0135230 | MtrunA17_Chr5g0440804 | 35.000 | 120 | 72 | 4 | 28 | 145 | 33 | 148 | 5.18e-15 | 69.3 |
| Msa0135230 | MtrunA17_Chr2g0306461 | 29.310 | 116 | 80 | 2 | 8 | 122 | 11 | 125 | 1.41e-14 | 68.9 |
| Msa0135230 | MtrunA17_Chr6g0453801 | 30.769 | 117 | 76 | 3 | 8 | 122 | 18 | 131 | 3.81e-14 | 67.0 |
| Msa0135230 | MtrunA17_Chr8g0385021 | 28.947 | 114 | 80 | 1 | 8 | 120 | 7 | 120 | 5.70e-14 | 68.2 |
| Msa0135230 | MtrunA17_Chr6g0453791 | 30.233 | 129 | 82 | 5 | 24 | 150 | 30 | 152 | 8.19e-14 | 66.2 |
| Msa0135230 | MtrunA17_Chr2g0289741 | 31.624 | 117 | 76 | 3 | 8 | 122 | 9 | 123 | 2.02e-13 | 65.1 |
| Msa0135230 | MtrunA17_Chr2g0324711 | 29.139 | 151 | 106 | 1 | 8 | 157 | 8 | 158 | 2.66e-13 | 67.0 |
| Msa0135230 | MtrunA17_Chr4g0033131 | 28.369 | 141 | 90 | 4 | 1 | 134 | 1 | 137 | 8.51e-13 | 63.5 |
| Msa0135230 | MtrunA17_Chr4g0033531 | 28.369 | 141 | 90 | 4 | 1 | 134 | 1 | 137 | 8.51e-13 | 63.5 |
| Msa0135230 | MtrunA17_Chr8g0385031 | 30.233 | 172 | 105 | 4 | 8 | 166 | 7 | 176 | 1.51e-12 | 64.3 |
| Msa0135230 | MtrunA17_Chr3g0144921 | 27.333 | 150 | 92 | 6 | 4 | 146 | 3 | 142 | 3.82e-12 | 61.6 |
| Msa0135230 | MtrunA17_Chr5g0440711 | 29.861 | 144 | 92 | 5 | 4 | 142 | 6 | 145 | 4.40e-12 | 60.8 |
| Msa0135230 | MtrunA17_Chr2g0317231 | 29.245 | 106 | 75 | 0 | 20 | 125 | 20 | 125 | 5.06e-12 | 63.5 |
| Msa0135230 | MtrunA17_Chr2g0319611 | 25.600 | 125 | 89 | 2 | 3 | 123 | 4 | 128 | 1.46e-11 | 61.2 |
| Msa0135230 | MtrunA17_Chr4g0001571 | 31.915 | 94 | 61 | 2 | 27 | 120 | 31 | 121 | 5.65e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0135230 | AT5G26330.1 | 59.394 | 165 | 66 | 1 | 10 | 174 | 9 | 172 | 1.48e-66 | 202 |
| Msa0135230 | AT2G31050.1 | 42.636 | 129 | 72 | 2 | 10 | 137 | 13 | 140 | 1.68e-33 | 118 |
| Msa0135230 | AT2G26720.1 | 37.589 | 141 | 83 | 2 | 1 | 137 | 1 | 140 | 1.87e-33 | 118 |
| Msa0135230 | AT2G32300.1 | 34.940 | 166 | 93 | 5 | 1 | 165 | 1 | 152 | 3.09e-31 | 114 |
| Msa0135230 | AT2G32300.2 | 34.940 | 166 | 93 | 5 | 1 | 165 | 31 | 182 | 1.11e-30 | 113 |
| Msa0135230 | AT3G17675.1 | 42.708 | 96 | 53 | 1 | 27 | 122 | 34 | 127 | 1.72e-23 | 90.5 |
| Msa0135230 | AT3G27200.1 | 32.432 | 111 | 71 | 3 | 14 | 123 | 15 | 122 | 4.54e-23 | 90.9 |
| Msa0135230 | AT4G31840.1 | 33.333 | 156 | 92 | 4 | 28 | 180 | 31 | 177 | 1.07e-22 | 90.1 |
| Msa0135230 | AT5G07475.1 | 35.570 | 149 | 91 | 3 | 14 | 162 | 19 | 162 | 2.11e-22 | 89.7 |
| Msa0135230 | AT4G28365.1 | 29.944 | 177 | 108 | 4 | 1 | 161 | 1 | 177 | 6.60e-21 | 85.9 |
| Msa0135230 | AT3G53330.1 | 36.190 | 105 | 66 | 1 | 19 | 122 | 182 | 286 | 7.02e-21 | 87.8 |
| Msa0135230 | AT3G53330.1 | 40.230 | 87 | 46 | 3 | 7 | 92 | 8 | 89 | 2.52e-14 | 70.1 |
| Msa0135230 | AT3G60270.1 | 37.864 | 103 | 61 | 2 | 21 | 123 | 22 | 121 | 4.05e-20 | 83.6 |
| Msa0135230 | AT1G45063.2 | 40.000 | 100 | 59 | 1 | 24 | 122 | 148 | 247 | 1.89e-19 | 83.6 |
| Msa0135230 | AT1G45063.2 | 32.812 | 128 | 80 | 3 | 1 | 123 | 1 | 127 | 1.50e-18 | 81.3 |
| Msa0135230 | AT1G45063.1 | 40.000 | 100 | 59 | 1 | 24 | 122 | 148 | 247 | 2.37e-19 | 84.3 |
| Msa0135230 | AT1G45063.1 | 32.812 | 128 | 80 | 3 | 1 | 123 | 1 | 127 | 1.96e-18 | 82.0 |
| Msa0135230 | AT2G02850.1 | 31.858 | 113 | 72 | 2 | 8 | 120 | 19 | 126 | 4.84e-19 | 79.0 |
| Msa0135230 | AT5G20230.1 | 34.646 | 127 | 78 | 2 | 25 | 150 | 25 | 147 | 5.22e-19 | 80.9 |
| Msa0135230 | AT5G53870.2 | 29.545 | 176 | 110 | 4 | 1 | 165 | 1 | 173 | 1.49e-18 | 82.0 |
| Msa0135230 | AT2G25060.1 | 33.588 | 131 | 81 | 3 | 10 | 134 | 14 | 144 | 1.69e-18 | 79.0 |
| Msa0135230 | AT1G72230.1 | 35.433 | 127 | 80 | 2 | 40 | 165 | 36 | 161 | 1.86e-18 | 79.0 |
| Msa0135230 | AT5G53870.1 | 29.545 | 176 | 110 | 4 | 1 | 165 | 1 | 173 | 2.59e-18 | 81.6 |
| Msa0135230 | AT3G60280.1 | 39.806 | 103 | 59 | 2 | 21 | 123 | 20 | 119 | 2.89e-18 | 79.3 |
| Msa0135230 | AT3G20570.1 | 31.034 | 116 | 78 | 2 | 9 | 123 | 15 | 129 | 4.65e-18 | 78.6 |
| Msa0135230 | AT1G64640.1 | 29.341 | 167 | 92 | 4 | 4 | 161 | 6 | 155 | 4.92e-18 | 78.2 |
| Msa0135230 | AT4G30590.1 | 31.538 | 130 | 81 | 4 | 1 | 123 | 1 | 129 | 2.15e-17 | 76.3 |
| Msa0135230 | AT1G79800.1 | 31.618 | 136 | 84 | 3 | 9 | 137 | 18 | 151 | 4.65e-17 | 75.5 |
| Msa0135230 | AT5G57920.1 | 32.632 | 95 | 60 | 1 | 43 | 133 | 44 | 138 | 8.92e-17 | 74.7 |
| Msa0135230 | AT5G15350.1 | 33.835 | 133 | 80 | 4 | 7 | 137 | 10 | 136 | 9.96e-17 | 74.3 |
| Msa0135230 | AT4G27520.1 | 31.034 | 145 | 93 | 3 | 9 | 146 | 15 | 159 | 1.15e-16 | 76.6 |
| Msa0135230 | AT5G57920.2 | 27.007 | 137 | 94 | 2 | 3 | 133 | 1 | 137 | 1.61e-16 | 73.9 |
| Msa0135230 | AT5G57920.3 | 31.250 | 112 | 71 | 2 | 28 | 133 | 59 | 170 | 3.95e-16 | 73.6 |
| Msa0135230 | AT1G22480.1 | 31.746 | 189 | 105 | 7 | 1 | 183 | 1 | 171 | 2.55e-15 | 70.5 |
| Msa0135230 | AT2G44790.1 | 37.634 | 93 | 53 | 3 | 33 | 123 | 36 | 125 | 2.65e-15 | 71.2 |
| Msa0135230 | AT3G18590.1 | 34.286 | 105 | 59 | 5 | 25 | 123 | 27 | 127 | 5.78e-15 | 70.1 |
| Msa0135230 | AT5G25090.1 | 33.333 | 81 | 54 | 0 | 43 | 123 | 47 | 127 | 6.44e-15 | 69.7 |
| Msa0135230 | AT4G32490.1 | 27.811 | 169 | 99 | 4 | 8 | 158 | 12 | 175 | 3.80e-14 | 68.2 |
| Msa0135230 | AT2G23990.1 | 35.000 | 80 | 51 | 1 | 44 | 122 | 49 | 128 | 5.14e-14 | 67.8 |
| Msa0135230 | AT1G48940.1 | 31.538 | 130 | 77 | 6 | 5 | 126 | 4 | 129 | 1.69e-13 | 65.9 |
| Msa0135230 | AT5G14345.1 | 36.275 | 102 | 59 | 3 | 41 | 141 | 35 | 131 | 2.03e-13 | 64.7 |
| Msa0135230 | AT4G12880.1 | 33.010 | 103 | 64 | 3 | 22 | 122 | 26 | 125 | 3.72e-13 | 63.9 |
| Msa0135230 | AT4G01380.1 | 28.205 | 156 | 79 | 6 | 30 | 180 | 77 | 204 | 4.46e-13 | 65.1 |
| Msa0135230 | AT2G27035.1 | 25.161 | 155 | 104 | 5 | 2 | 155 | 8 | 151 | 4.76e-12 | 61.6 |
| Msa0135230 | AT1G17800.1 | 29.167 | 120 | 78 | 4 | 8 | 123 | 21 | 137 | 1.37e-11 | 59.7 |
| Msa0135230 | AT3G01070.1 | 32.653 | 98 | 61 | 3 | 9 | 104 | 12 | 106 | 5.42e-11 | 58.9 |
Find 40 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCATGATTTGTTATCTTTA+TGG | 0.100250 | 1_3:+66854793 | None:intergenic |
| AAATGTGATCATATTATTAT+AGG | 0.226490 | 1_3:+66854346 | None:intergenic |
| TTGTAATTTGTTTACTAGTT+TGG | 0.295248 | 1_3:-66854488 | Msa0135230:three_prime_UTR |
| CTAGCTATATATGCTAAATA+AGG | 0.322395 | 1_3:-66854516 | Msa0135230:exon |
| TGTTTACTAGTTTGGTTTGT+GGG | 0.329596 | 1_3:-66854480 | Msa0135230:three_prime_UTR |
| TCTGTAATTCCTTTACTTGC+TGG | 0.332337 | 1_3:-66854425 | Msa0135230:three_prime_UTR |
| ATCATCTTCACCTTCAGCAT+TGG | 0.417122 | 1_3:-66854672 | Msa0135230:CDS |
| TTGTTTACTAGTTTGGTTTG+TGG | 0.424475 | 1_3:-66854481 | Msa0135230:three_prime_UTR |
| TCATATTATTATAGGACAAC+TGG | 0.437115 | 1_3:+66854354 | None:intergenic |
| TTCAGTGGTGCAGCATTACT+AGG | 0.451042 | 1_3:+66854599 | None:intergenic |
| GTCACCAAGATGGAAGTTCT+TGG | 0.461769 | 1_3:+66855692 | None:intergenic |
| AGAGTCTATAGTCATGGCTT+TGG | 0.467395 | 1_3:-66855844 | Msa0135230:exon |
| CCAATTGCAACATTCACTAC+TGG | 0.482441 | 1_3:-66854824 | Msa0135230:CDS |
| TTCATATGCAGCTGTATACA+AGG | 0.487437 | 1_3:-66855775 | Msa0135230:CDS |
| CCAGTAGTGAATGTTGCAAT+TGG | 0.487702 | 1_3:+66854824 | None:intergenic |
| AGGTTGGTGATTCTGCTGGC+TGG | 0.497516 | 1_3:-66855755 | Msa0135230:CDS |
| TACAAGGTTGGTGATTCTGC+TGG | 0.511253 | 1_3:-66855759 | Msa0135230:CDS |
| ACCATAAAGATAACAAATCA+TGG | 0.515142 | 1_3:-66854794 | Msa0135230:CDS |
| TGTCCTGCTTGACAGTGTCC+AGG | 0.520727 | 1_3:+66854746 | None:intergenic |
| GGCTTTGGTAGAAAGAGCTA+TGG | 0.525531 | 1_3:-66855829 | Msa0135230:CDS |
| AGGAGAAGGTGCAGGTACAT+TGG | 0.525671 | 1_3:+66854619 | None:intergenic |
| GCTGGAACTGTAGCTTCAGC+AGG | 0.528803 | 1_3:+66854644 | None:intergenic |
| GCTACCAAGAACTTCCATCT+TGG | 0.537592 | 1_3:-66855696 | Msa0135230:CDS |
| TACTAATAGTGTCACCAAGA+TGG | 0.545203 | 1_3:+66855682 | None:intergenic |
| TAATTCTATCCAGCAAGTAA+AGG | 0.554771 | 1_3:+66854416 | None:intergenic |
| GCAGGAGAAGCCAATGCTGA+AGG | 0.557674 | 1_3:+66854662 | None:intergenic |
| GTACCTGGACACTGTCAAGC+AGG | 0.560336 | 1_3:-66854749 | Msa0135230:CDS |
| TATGCAGCTGTATACAAGGT+TGG | 0.562762 | 1_3:-66855771 | Msa0135230:CDS |
| GGTGCAGGTACATTGGAAGC+TGG | 0.574590 | 1_3:+66854626 | None:intergenic |
| AATGCTGAAGGTGAAGATGA+TGG | 0.589576 | 1_3:+66854674 | None:intergenic |
| TTTAAAGCAATACATTTCAG+TGG | 0.593570 | 1_3:+66854584 | None:intergenic |
| ATTAACAGCAAGAAATTGCA+TGG | 0.600755 | 1_3:+66854541 | None:intergenic |
| TCTTGCAGAGTCTATAGTCA+TGG | 0.602471 | 1_3:-66855850 | Msa0135230:exon |
| ACACTGTCAAGCAGGACAGA+AGG | 0.613934 | 1_3:-66854741 | Msa0135230:CDS |
| GGTGCAGCATTACTAGGAGA+AGG | 0.618539 | 1_3:+66854605 | None:intergenic |
| TCTGCTGGCTGGACTACACT+TGG | 0.619967 | 1_3:-66855744 | Msa0135230:CDS |
| GAAGGTGAAGATGATGGAGC+AGG | 0.628782 | 1_3:+66854680 | None:intergenic |
| TGCATTGCATGACTTGTACA+TGG | 0.629046 | 1_3:+66854853 | None:intergenic |
| GTGTCACTCGCATCACATTG+TGG | 0.630592 | 1_3:+66854879 | None:intergenic |
| GCATTACTAGGAGAAGGTGC+AGG | 0.642038 | 1_3:+66854611 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTAATAAATAATGTTAATTT+TGG | + | chr1_3:66854773-66854792 | None:intergenic | 10.0% |
| !!! | GTAATAAATAATGTTAATTT+TGG | + | chr1_3:66854773-66854792 | None:intergenic | 10.0% |
| !! | ATTTACTAATACAAAAAACA+AGG | - | chr1_3:66854428-66854447 | Msa0135230:three_prime_UTR | 15.0% |
| !! | TATTATATATATCTTTGTCT+TGG | - | chr1_3:66855038-66855057 | Msa0135230:intron | 15.0% |
| !! | AAATGTGATCATATTATTAT+AGG | + | chr1_3:66855967-66855986 | None:intergenic | 15.0% |
| !! | ATTTACTAATACAAAAAACA+AGG | - | chr1_3:66854428-66854447 | Msa0135230:three_prime_UTR | 15.0% |
| !! | TATTATATATATCTTTGTCT+TGG | - | chr1_3:66855038-66855057 | Msa0135230:intron | 15.0% |
| !! | AAATGTGATCATATTATTAT+AGG | + | chr1_3:66855967-66855986 | None:intergenic | 15.0% |
| !!! | TAACATTGACTACAAAAAAT+GGG | - | chr1_3:66854589-66854608 | Msa0135230:CDS | 20.0% |
| !!! | CAAATTACATAATTAGTCTT+GGG | + | chr1_3:66854934-66854953 | None:intergenic | 20.0% |
| !! | TATTTCTTCAAGAAATTAGA+CGG | + | chr1_3:66855064-66855083 | None:intergenic | 20.0% |
| !!! | TTGTAATTTGTTTACTAGTT+TGG | - | chr1_3:66855822-66855841 | Msa0135230:CDS | 20.0% |
| !!! | TAACATTGACTACAAAAAAT+GGG | - | chr1_3:66854589-66854608 | Msa0135230:CDS | 20.0% |
| !!! | CAAATTACATAATTAGTCTT+GGG | + | chr1_3:66854934-66854953 | None:intergenic | 20.0% |
| !! | TATTTCTTCAAGAAATTAGA+CGG | + | chr1_3:66855064-66855083 | None:intergenic | 20.0% |
| !!! | TTGTAATTTGTTTACTAGTT+TGG | - | chr1_3:66855822-66855841 | Msa0135230:CDS | 20.0% |
| !!! | AGTAAATTTCTTTTTTGCTG+AGG | + | chr1_3:66854415-66854434 | None:intergenic | 25.0% |
| ! | TAATACAAAAAACAAGGAGA+AGG | - | chr1_3:66854434-66854453 | Msa0135230:three_prime_UTR | 25.0% |
| !!! | TATGGTTTTGTCTATAATGA+TGG | - | chr1_3:66854499-66854518 | Msa0135230:three_prime_UTR | 25.0% |
| !! | GTAACATTGACTACAAAAAA+TGG | - | chr1_3:66854588-66854607 | Msa0135230:CDS | 25.0% |
| ! | GAACAAATTAAACATGCAAT+TGG | + | chr1_3:66854664-66854683 | None:intergenic | 25.0% |
| !! | TGAGTTTTTCTATACCAAAT+TGG | + | chr1_3:66854836-66854855 | None:intergenic | 25.0% |
| ! | CTTAAAGCAAAAACATGAAA+AGG | + | chr1_3:66854866-66854885 | None:intergenic | 25.0% |
| !! | GCAAATTACATAATTAGTCT+TGG | + | chr1_3:66854935-66854954 | None:intergenic | 25.0% |
| ! | ATGAAAACAAAAAGTTGTGT+AGG | + | chr1_3:66854961-66854980 | None:intergenic | 25.0% |
| !!! | CACAACTTTTTGTTTTCATA+TGG | - | chr1_3:66854962-66854981 | Msa0135230:intron | 25.0% |
| ! | TGATAAAAAATGTTCTAGTC+TGG | - | chr1_3:66855125-66855144 | Msa0135230:intron | 25.0% |
| !!! | AACTCAATTTTGTTTTTGAG+AGG | - | chr1_3:66855336-66855355 | Msa0135230:intron | 25.0% |
| ! | ACCATAAAGATAACAAATCA+TGG | - | chr1_3:66855516-66855535 | Msa0135230:intron | 25.0% |
| !!! | ACCATGATTTGTTATCTTTA+TGG | + | chr1_3:66855520-66855539 | None:intergenic | 25.0% |
| !! | TTTAAAGCAATACATTTCAG+TGG | + | chr1_3:66855729-66855748 | None:intergenic | 25.0% |
| !!! | TATTGCTTTAAAAATGATGC+TGG | - | chr1_3:66855737-66855756 | Msa0135230:CDS | 25.0% |
| ! | CTAGCTATATATGCTAAATA+AGG | - | chr1_3:66855794-66855813 | Msa0135230:CDS | 25.0% |
| ! | AGAAGAAGTAAAAACCAAAA+AGG | + | chr1_3:66855856-66855875 | None:intergenic | 25.0% |
| !!! | TTGGTTTTTACTTCTTCTAT+TGG | - | chr1_3:66855858-66855877 | Msa0135230:five_prime_UTR | 25.0% |
| ! | TCATATTATTATAGGACAAC+TGG | + | chr1_3:66855959-66855978 | None:intergenic | 25.0% |
| !!! | AGTAAATTTCTTTTTTGCTG+AGG | + | chr1_3:66854415-66854434 | None:intergenic | 25.0% |
| ! | TAATACAAAAAACAAGGAGA+AGG | - | chr1_3:66854434-66854453 | Msa0135230:three_prime_UTR | 25.0% |
| !!! | TATGGTTTTGTCTATAATGA+TGG | - | chr1_3:66854499-66854518 | Msa0135230:three_prime_UTR | 25.0% |
| !! | GTAACATTGACTACAAAAAA+TGG | - | chr1_3:66854588-66854607 | Msa0135230:CDS | 25.0% |
| ! | GAACAAATTAAACATGCAAT+TGG | + | chr1_3:66854664-66854683 | None:intergenic | 25.0% |
| !! | TGAGTTTTTCTATACCAAAT+TGG | + | chr1_3:66854836-66854855 | None:intergenic | 25.0% |
| ! | CTTAAAGCAAAAACATGAAA+AGG | + | chr1_3:66854866-66854885 | None:intergenic | 25.0% |
| !! | GCAAATTACATAATTAGTCT+TGG | + | chr1_3:66854935-66854954 | None:intergenic | 25.0% |
| ! | ATGAAAACAAAAAGTTGTGT+AGG | + | chr1_3:66854961-66854980 | None:intergenic | 25.0% |
| !!! | CACAACTTTTTGTTTTCATA+TGG | - | chr1_3:66854962-66854981 | Msa0135230:intron | 25.0% |
| ! | TGATAAAAAATGTTCTAGTC+TGG | - | chr1_3:66855125-66855144 | Msa0135230:intron | 25.0% |
| !!! | AACTCAATTTTGTTTTTGAG+AGG | - | chr1_3:66855336-66855355 | Msa0135230:intron | 25.0% |
| ! | ACCATAAAGATAACAAATCA+TGG | - | chr1_3:66855516-66855535 | Msa0135230:intron | 25.0% |
| !!! | ACCATGATTTGTTATCTTTA+TGG | + | chr1_3:66855520-66855539 | None:intergenic | 25.0% |
| !! | TTTAAAGCAATACATTTCAG+TGG | + | chr1_3:66855729-66855748 | None:intergenic | 25.0% |
| !!! | TATTGCTTTAAAAATGATGC+TGG | - | chr1_3:66855737-66855756 | Msa0135230:CDS | 25.0% |
| ! | CTAGCTATATATGCTAAATA+AGG | - | chr1_3:66855794-66855813 | Msa0135230:CDS | 25.0% |
| ! | AGAAGAAGTAAAAACCAAAA+AGG | + | chr1_3:66855856-66855875 | None:intergenic | 25.0% |
| !!! | TTGGTTTTTACTTCTTCTAT+TGG | - | chr1_3:66855858-66855877 | Msa0135230:five_prime_UTR | 25.0% |
| ! | TCATATTATTATAGGACAAC+TGG | + | chr1_3:66855959-66855978 | None:intergenic | 25.0% |
| TTAAACATGCAATTGGAGAA+AGG | + | chr1_3:66854657-66854676 | None:intergenic | 30.0% | |
| !!! | CACATTTTCTGAAGTTTGAA+AGG | - | chr1_3:66854726-66854745 | Msa0135230:CDS | 30.0% |
| AAAGCAAAAACATGAAAAGG+AGG | + | chr1_3:66854863-66854882 | None:intergenic | 30.0% | |
| CATGAATATGAATCCGAATT+CGG | + | chr1_3:66855153-66855172 | None:intergenic | 30.0% | |
| !!! | TAAAAATGATGCTGGCTTTT+TGG | - | chr1_3:66855745-66855764 | Msa0135230:CDS | 30.0% |
| !!! | AAAAATGATGCTGGCTTTTT+GGG | - | chr1_3:66855746-66855765 | Msa0135230:CDS | 30.0% |
| ATTAACAGCAAGAAATTGCA+TGG | + | chr1_3:66855772-66855791 | None:intergenic | 30.0% | |
| !! | TTGTTTACTAGTTTGGTTTG+TGG | - | chr1_3:66855829-66855848 | Msa0135230:CDS | 30.0% |
| !! | TGTTTACTAGTTTGGTTTGT+GGG | - | chr1_3:66855830-66855849 | Msa0135230:CDS | 30.0% |
| TAATTCTATCCAGCAAGTAA+AGG | + | chr1_3:66855897-66855916 | None:intergenic | 30.0% | |
| TTAAACATGCAATTGGAGAA+AGG | + | chr1_3:66854657-66854676 | None:intergenic | 30.0% | |
| !!! | CACATTTTCTGAAGTTTGAA+AGG | - | chr1_3:66854726-66854745 | Msa0135230:CDS | 30.0% |
| AAAGCAAAAACATGAAAAGG+AGG | + | chr1_3:66854863-66854882 | None:intergenic | 30.0% | |
| CATGAATATGAATCCGAATT+CGG | + | chr1_3:66855153-66855172 | None:intergenic | 30.0% | |
| !!! | TAAAAATGATGCTGGCTTTT+TGG | - | chr1_3:66855745-66855764 | Msa0135230:CDS | 30.0% |
| !!! | AAAAATGATGCTGGCTTTTT+GGG | - | chr1_3:66855746-66855765 | Msa0135230:CDS | 30.0% |
| ATTAACAGCAAGAAATTGCA+TGG | + | chr1_3:66855772-66855791 | None:intergenic | 30.0% | |
| !! | TTGTTTACTAGTTTGGTTTG+TGG | - | chr1_3:66855829-66855848 | Msa0135230:CDS | 30.0% |
| !! | TGTTTACTAGTTTGGTTTGT+GGG | - | chr1_3:66855830-66855849 | Msa0135230:CDS | 30.0% |
| TAATTCTATCCAGCAAGTAA+AGG | + | chr1_3:66855897-66855916 | None:intergenic | 30.0% | |
| !!! | TTTCTTTTTTGCTGAGGTTG+AGG | + | chr1_3:66854409-66854428 | None:intergenic | 35.0% |
| TTCATATGCAGCTGTATACA+AGG | - | chr1_3:66854535-66854554 | Msa0135230:CDS | 35.0% | |
| TACTAATAGTGTCACCAAGA+TGG | + | chr1_3:66854631-66854650 | None:intergenic | 35.0% | |
| AAGTTTGAAAGGTCCTTTCA+AGG | - | chr1_3:66854737-66854756 | Msa0135230:CDS | 35.0% | |
| AGTTTGAAAGGTCCTTTCAA+GGG | - | chr1_3:66854738-66854757 | Msa0135230:CDS | 35.0% | |
| TACCAAATTGGACAATGTTG+AGG | + | chr1_3:66854824-66854843 | None:intergenic | 35.0% | |
| AAAGGTAATGCAAGTGAAAG+TGG | + | chr1_3:66855206-66855225 | None:intergenic | 35.0% | |
| ! | TGCATTACCTTTTTGTTCTG+TGG | - | chr1_3:66855214-66855233 | Msa0135230:intron | 35.0% |
| ! | AACCATGCTCTTGATGATTT+GGG | + | chr1_3:66855290-66855309 | None:intergenic | 35.0% |
| ! | AAACCATGCTCTTGATGATT+TGG | + | chr1_3:66855291-66855310 | None:intergenic | 35.0% |
| TCTGTAATTCCTTTACTTGC+TGG | - | chr1_3:66855885-66855904 | Msa0135230:five_prime_UTR | 35.0% | |
| !!! | TTTCTTTTTTGCTGAGGTTG+AGG | + | chr1_3:66854409-66854428 | None:intergenic | 35.0% |
| TTCATATGCAGCTGTATACA+AGG | - | chr1_3:66854535-66854554 | Msa0135230:CDS | 35.0% | |
| TACTAATAGTGTCACCAAGA+TGG | + | chr1_3:66854631-66854650 | None:intergenic | 35.0% | |
| AAGTTTGAAAGGTCCTTTCA+AGG | - | chr1_3:66854737-66854756 | Msa0135230:CDS | 35.0% | |
| AGTTTGAAAGGTCCTTTCAA+GGG | - | chr1_3:66854738-66854757 | Msa0135230:CDS | 35.0% | |
| TACCAAATTGGACAATGTTG+AGG | + | chr1_3:66854824-66854843 | None:intergenic | 35.0% | |
| AAAGGTAATGCAAGTGAAAG+TGG | + | chr1_3:66855206-66855225 | None:intergenic | 35.0% | |
| ! | TGCATTACCTTTTTGTTCTG+TGG | - | chr1_3:66855214-66855233 | Msa0135230:intron | 35.0% |
| ! | AACCATGCTCTTGATGATTT+GGG | + | chr1_3:66855290-66855309 | None:intergenic | 35.0% |
| ! | AAACCATGCTCTTGATGATT+TGG | + | chr1_3:66855291-66855310 | None:intergenic | 35.0% |
| TCTGTAATTCCTTTACTTGC+TGG | - | chr1_3:66855885-66855904 | Msa0135230:five_prime_UTR | 35.0% | |
| TCTTGCAGAGTCTATAGTCA+TGG | - | chr1_3:66854460-66854479 | Msa0135230:three_prime_UTR | 40.0% | |
| AGAGTCTATAGTCATGGCTT+TGG | - | chr1_3:66854466-66854485 | Msa0135230:three_prime_UTR | 40.0% | |
| TATGCAGCTGTATACAAGGT+TGG | - | chr1_3:66854539-66854558 | Msa0135230:CDS | 40.0% | |
| GTCCTCAACATTGTCCAATT+TGG | - | chr1_3:66854819-66854838 | Msa0135230:CDS | 40.0% | |
| CAAGAAAGATAGTGCAACAG+TGG | + | chr1_3:66854895-66854914 | None:intergenic | 40.0% | |
| CACTGTTGCACTATCTTTCT+TGG | - | chr1_3:66854893-66854912 | Msa0135230:CDS | 40.0% | |
| TTGCACTATCTTTCTTGGCA+TGG | - | chr1_3:66854898-66854917 | Msa0135230:CDS | 40.0% | |
| TAGTCTCGAGTTCGATTGAA+AGG | - | chr1_3:66855091-66855110 | Msa0135230:intron | 40.0% | |
| TTCTAGTCTGGATCCGAATT+CGG | - | chr1_3:66855137-66855156 | Msa0135230:intron | 40.0% | |
| GTAATGCAAGTGAAAGTGGT+GGG | + | chr1_3:66855202-66855221 | None:intergenic | 40.0% | |
| ! | CAAAGCACCACAGAACAAAA+AGG | + | chr1_3:66855224-66855243 | None:intergenic | 40.0% |
| ! | TGCATTGCATGACTTGTACA+TGG | + | chr1_3:66855460-66855479 | None:intergenic | 40.0% |
| CCAGTAGTGAATGTTGCAAT+TGG | + | chr1_3:66855489-66855508 | None:intergenic | 40.0% | |
| CCAATTGCAACATTCACTAC+TGG | - | chr1_3:66855486-66855505 | Msa0135230:intron | 40.0% | |
| ! | GGTCATCACTTCTTCTTTTG+TGG | - | chr1_3:66855537-66855556 | Msa0135230:intron | 40.0% |
| ! | TTCTTCTTTTGTGGTGTACC+TGG | - | chr1_3:66855546-66855565 | Msa0135230:intron | 40.0% |
| AATGCTGAAGGTGAAGATGA+TGG | + | chr1_3:66855639-66855658 | None:intergenic | 40.0% | |
| ATCATCTTCACCTTCAGCAT+TGG | - | chr1_3:66855638-66855657 | Msa0135230:intron | 40.0% | |
| TCTTGCAGAGTCTATAGTCA+TGG | - | chr1_3:66854460-66854479 | Msa0135230:three_prime_UTR | 40.0% | |
| AGAGTCTATAGTCATGGCTT+TGG | - | chr1_3:66854466-66854485 | Msa0135230:three_prime_UTR | 40.0% | |
| TATGCAGCTGTATACAAGGT+TGG | - | chr1_3:66854539-66854558 | Msa0135230:CDS | 40.0% | |
| GTCCTCAACATTGTCCAATT+TGG | - | chr1_3:66854819-66854838 | Msa0135230:CDS | 40.0% | |
| CAAGAAAGATAGTGCAACAG+TGG | + | chr1_3:66854895-66854914 | None:intergenic | 40.0% | |
| CACTGTTGCACTATCTTTCT+TGG | - | chr1_3:66854893-66854912 | Msa0135230:CDS | 40.0% | |
| TTGCACTATCTTTCTTGGCA+TGG | - | chr1_3:66854898-66854917 | Msa0135230:CDS | 40.0% | |
| TAGTCTCGAGTTCGATTGAA+AGG | - | chr1_3:66855091-66855110 | Msa0135230:intron | 40.0% | |
| TTCTAGTCTGGATCCGAATT+CGG | - | chr1_3:66855137-66855156 | Msa0135230:intron | 40.0% | |
| GTAATGCAAGTGAAAGTGGT+GGG | + | chr1_3:66855202-66855221 | None:intergenic | 40.0% | |
| ! | CAAAGCACCACAGAACAAAA+AGG | + | chr1_3:66855224-66855243 | None:intergenic | 40.0% |
| ! | TGCATTGCATGACTTGTACA+TGG | + | chr1_3:66855460-66855479 | None:intergenic | 40.0% |
| CCAGTAGTGAATGTTGCAAT+TGG | + | chr1_3:66855489-66855508 | None:intergenic | 40.0% | |
| CCAATTGCAACATTCACTAC+TGG | - | chr1_3:66855486-66855505 | Msa0135230:intron | 40.0% | |
| ! | GGTCATCACTTCTTCTTTTG+TGG | - | chr1_3:66855537-66855556 | Msa0135230:intron | 40.0% |
| ! | TTCTTCTTTTGTGGTGTACC+TGG | - | chr1_3:66855546-66855565 | Msa0135230:intron | 40.0% |
| AATGCTGAAGGTGAAGATGA+TGG | + | chr1_3:66855639-66855658 | None:intergenic | 40.0% | |
| ATCATCTTCACCTTCAGCAT+TGG | - | chr1_3:66855638-66855657 | Msa0135230:intron | 40.0% | |
| ! | GGCTTTGGTAGAAAGAGCTA+TGG | - | chr1_3:66854481-66854500 | Msa0135230:three_prime_UTR | 45.0% |
| !! | TACAAGGTTGGTGATTCTGC+TGG | - | chr1_3:66854551-66854570 | Msa0135230:CDS | 45.0% |
| GCTACCAAGAACTTCCATCT+TGG | - | chr1_3:66854614-66854633 | Msa0135230:CDS | 45.0% | |
| GTCACCAAGATGGAAGTTCT+TGG | + | chr1_3:66854621-66854640 | None:intergenic | 45.0% | |
| TGGTTGTCTTCTCCCTTGAA+AGG | + | chr1_3:66854753-66854772 | None:intergenic | 45.0% | |
| CTCTATGTACCTCTCCAACA+TGG | - | chr1_3:66854797-66854816 | Msa0135230:CDS | 45.0% | |
| GACAATGTTGAGGACCATGT+TGG | + | chr1_3:66854814-66854833 | None:intergenic | 45.0% | |
| GGTAATGCAAGTGAAAGTGG+TGG | + | chr1_3:66855203-66855222 | None:intergenic | 45.0% | |
| CATGCAATGACTTTGTCGTG+TGG | - | chr1_3:66855263-66855282 | Msa0135230:intron | 45.0% | |
| GTCCCAAATCATCAAGAGCA+TGG | - | chr1_3:66855285-66855304 | Msa0135230:intron | 45.0% | |
| TTCAGTGGTGCAGCATTACT+AGG | + | chr1_3:66855714-66855733 | None:intergenic | 45.0% | |
| !!! | GTTTGGTTTGTGGGCCTTTT+TGG | - | chr1_3:66855839-66855858 | Msa0135230:exon | 45.0% |
| ! | GGCTTTGGTAGAAAGAGCTA+TGG | - | chr1_3:66854481-66854500 | Msa0135230:three_prime_UTR | 45.0% |
| !! | TACAAGGTTGGTGATTCTGC+TGG | - | chr1_3:66854551-66854570 | Msa0135230:CDS | 45.0% |
| GCTACCAAGAACTTCCATCT+TGG | - | chr1_3:66854614-66854633 | Msa0135230:CDS | 45.0% | |
| GTCACCAAGATGGAAGTTCT+TGG | + | chr1_3:66854621-66854640 | None:intergenic | 45.0% | |
| TGGTTGTCTTCTCCCTTGAA+AGG | + | chr1_3:66854753-66854772 | None:intergenic | 45.0% | |
| CTCTATGTACCTCTCCAACA+TGG | - | chr1_3:66854797-66854816 | Msa0135230:CDS | 45.0% | |
| GACAATGTTGAGGACCATGT+TGG | + | chr1_3:66854814-66854833 | None:intergenic | 45.0% | |
| GGTAATGCAAGTGAAAGTGG+TGG | + | chr1_3:66855203-66855222 | None:intergenic | 45.0% | |
| CATGCAATGACTTTGTCGTG+TGG | - | chr1_3:66855263-66855282 | Msa0135230:intron | 45.0% | |
| GTCCCAAATCATCAAGAGCA+TGG | - | chr1_3:66855285-66855304 | Msa0135230:intron | 45.0% | |
| TTCAGTGGTGCAGCATTACT+AGG | + | chr1_3:66855714-66855733 | None:intergenic | 45.0% | |
| !!! | GTTTGGTTTGTGGGCCTTTT+TGG | - | chr1_3:66855839-66855858 | Msa0135230:exon | 45.0% |
| TGTTGAGGACCATGTTGGAG+AGG | + | chr1_3:66854809-66854828 | None:intergenic | 50.0% | |
| ! | GTGTCACTCGCATCACATTG+TGG | + | chr1_3:66855434-66855453 | None:intergenic | 50.0% |
| ACACTGTCAAGCAGGACAGA+AGG | - | chr1_3:66855569-66855588 | Msa0135230:intron | 50.0% | |
| !! | GAAGGTGAAGATGATGGAGC+AGG | + | chr1_3:66855633-66855652 | None:intergenic | 50.0% |
| ! | AGGAGAAGGTGCAGGTACAT+TGG | + | chr1_3:66855694-66855713 | None:intergenic | 50.0% |
| ! | GCATTACTAGGAGAAGGTGC+AGG | + | chr1_3:66855702-66855721 | None:intergenic | 50.0% |
| GGTGCAGCATTACTAGGAGA+AGG | + | chr1_3:66855708-66855727 | None:intergenic | 50.0% | |
| TGTTGAGGACCATGTTGGAG+AGG | + | chr1_3:66854809-66854828 | None:intergenic | 50.0% | |
| ! | GTGTCACTCGCATCACATTG+TGG | + | chr1_3:66855434-66855453 | None:intergenic | 50.0% |
| ACACTGTCAAGCAGGACAGA+AGG | - | chr1_3:66855569-66855588 | Msa0135230:intron | 50.0% | |
| !! | GAAGGTGAAGATGATGGAGC+AGG | + | chr1_3:66855633-66855652 | None:intergenic | 50.0% |
| ! | AGGAGAAGGTGCAGGTACAT+TGG | + | chr1_3:66855694-66855713 | None:intergenic | 50.0% |
| ! | GCATTACTAGGAGAAGGTGC+AGG | + | chr1_3:66855702-66855721 | None:intergenic | 50.0% |
| GGTGCAGCATTACTAGGAGA+AGG | + | chr1_3:66855708-66855727 | None:intergenic | 50.0% | |
| !! | AGGTTGGTGATTCTGCTGGC+TGG | - | chr1_3:66854555-66854574 | Msa0135230:CDS | 55.0% |
| ! | TCTGCTGGCTGGACTACACT+TGG | - | chr1_3:66854566-66854585 | Msa0135230:CDS | 55.0% |
| GTACCTGGACACTGTCAAGC+AGG | - | chr1_3:66855561-66855580 | Msa0135230:intron | 55.0% | |
| TGTCCTGCTTGACAGTGTCC+AGG | + | chr1_3:66855567-66855586 | None:intergenic | 55.0% | |
| GCAGGAGAAGCCAATGCTGA+AGG | + | chr1_3:66855651-66855670 | None:intergenic | 55.0% | |
| GCTGGAACTGTAGCTTCAGC+AGG | + | chr1_3:66855669-66855688 | None:intergenic | 55.0% | |
| GGTGCAGGTACATTGGAAGC+TGG | + | chr1_3:66855687-66855706 | None:intergenic | 55.0% | |
| !! | AGGTTGGTGATTCTGCTGGC+TGG | - | chr1_3:66854555-66854574 | Msa0135230:CDS | 55.0% |
| ! | TCTGCTGGCTGGACTACACT+TGG | - | chr1_3:66854566-66854585 | Msa0135230:CDS | 55.0% |
| GTACCTGGACACTGTCAAGC+AGG | - | chr1_3:66855561-66855580 | Msa0135230:intron | 55.0% | |
| TGTCCTGCTTGACAGTGTCC+AGG | + | chr1_3:66855567-66855586 | None:intergenic | 55.0% | |
| GCAGGAGAAGCCAATGCTGA+AGG | + | chr1_3:66855651-66855670 | None:intergenic | 55.0% | |
| GCTGGAACTGTAGCTTCAGC+AGG | + | chr1_3:66855669-66855688 | None:intergenic | 55.0% | |
| GGTGCAGGTACATTGGAAGC+TGG | + | chr1_3:66855687-66855706 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 66854337 | 66855995 | 66854337 | ID=Msa0135230;Name=Msa0135230 |
| chr1_3 | mRNA | 66854337 | 66855995 | 66854337 | ID=Msa0135230-mRNA-1;Parent=Msa0135230;Name=Msa0135230-mRNA-1;_AED=0.05;_eAED=0.05;_QI=142|1|1|1|1|1|2|198|185 |
| chr1_3 | exon | 66854337 | 66854923 | 66854337 | ID=Msa0135230-mRNA-1:exon:22858;Parent=Msa0135230-mRNA-1 |
| chr1_3 | exon | 66855685 | 66855995 | 66855685 | ID=Msa0135230-mRNA-1:exon:22857;Parent=Msa0135230-mRNA-1 |
| chr1_3 | five_prime_UTR | 66855854 | 66855995 | 66855854 | ID=Msa0135230-mRNA-1:five_prime_utr;Parent=Msa0135230-mRNA-1 |
| chr1_3 | CDS | 66855685 | 66855853 | 66855685 | ID=Msa0135230-mRNA-1:cds;Parent=Msa0135230-mRNA-1 |
| chr1_3 | CDS | 66854535 | 66854923 | 66854535 | ID=Msa0135230-mRNA-1:cds;Parent=Msa0135230-mRNA-1 |
| chr1_3 | three_prime_UTR | 66854337 | 66854534 | 66854337 | ID=Msa0135230-mRNA-1:three_prime_utr;Parent=Msa0135230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
