AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0182030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0182030 MtrunA17_Chr1g0201701 94.565 184 10 0 74 257 1 184 7.91e-128 360
Msa0182030 MtrunA17_Chr5g0406581 65.909 44 13 1 21 62 8 51 5.38e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0182030 AT5G09270.1 55.789 95 37 2 163 257 19 108 1.59e-30 110
Msa0182030 AT5G09270.2 55.789 95 37 2 163 257 19 108 1.59e-30 110

Find 64 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTCTGCTAAGGGCTTTA+TGG 0.055488 1_4:+70456669 Msa0182030:CDS
CCCTCCTGCTGCAGGCTTTA+TGG 0.092653 1_4:+70456840 Msa0182030:CDS
TATATGGCGGCTTTGGTCTT+TGG 0.247259 1_4:+70456941 Msa0182030:CDS
ATAGATATAGAAAGCTTCTT+AGG 0.309898 1_4:+70456971 Msa0182030:CDS
TATACAATTTGCATCTTTGT+TGG 0.335063 1_4:-70455486 None:intergenic
GGTTCCTATATTCTTGTATA+TGG 0.337081 1_4:+70456925 Msa0182030:CDS
ATTCTTGTATATGGCGGCTT+TGG 0.347000 1_4:+70456934 Msa0182030:CDS
TTCTGCCAAAGTGGTTGAAA+AGG 0.353945 1_4:+70457080 Msa0182030:CDS
CTTGGTCCTCACCAGTTTCC+AGG 0.356142 1_4:-70456807 None:intergenic
TGCAGGCTTTATGGATTCAT+TGG 0.369416 1_4:+70456849 Msa0182030:CDS
CAGAAACTTATCCTTATGTA+TGG 0.372733 1_4:+70456902 Msa0182030:CDS
GGAACACTTAGCCAAGAAAA+TGG 0.372873 1_4:+70456561 Msa0182030:CDS
TGGATAAGTGCTTCAGAACT+TGG 0.383586 1_4:-70456616 None:intergenic
TTATGGATTCATTGGAAAAT+CGG 0.384322 1_4:+70456857 Msa0182030:CDS
TAGTATTTCATTATGGGAAT+GGG 0.396444 1_4:+70454518 Msa0182030:intron
TGATTTGCCATGTCCTTGGC+TGG 0.408407 1_4:-70456739 None:intergenic
TATAATATCTTAGTTAGTAC+TGG 0.412152 1_4:+70455663 Msa0182030:intron
AAGAAGCTTTCTATATCTAT+AGG 0.413891 1_4:-70456968 None:intergenic
GTCGGTGCCCCTCCTGCTGC+AGG 0.419080 1_4:+70456832 Msa0182030:CDS
CAGGAGGGGCACCGACTACT+TGG 0.421600 1_4:-70456825 None:intergenic
AAGTTCTGCAGCACCTATCC+TGG 0.422828 1_4:+70456789 Msa0182030:CDS
TTCATTATGGGAATGGGAAT+GGG 0.425965 1_4:+70454524 Msa0182030:CDS
ACTCTTGAAAGGAATCCTTT+CGG 0.445584 1_4:+70455521 Msa0182030:CDS
AGGATAGGTGCTGCAGAACT+TGG 0.446859 1_4:-70456787 None:intergenic
TTAGTATTTCATTATGGGAA+TGG 0.450630 1_4:+70454517 Msa0182030:intron
TTTCATTATGGGAATGGGAA+TGG 0.454630 1_4:+70454523 Msa0182030:CDS
AGTCGGTGGCTCTTCTGCTA+AGG 0.456570 1_4:+70456660 Msa0182030:CDS
GCAGCACCTATCCTGGAAAC+TGG 0.465240 1_4:+70456796 Msa0182030:CDS
GAAGCACTTATCCAGAAAAC+TGG 0.468163 1_4:+70456625 Msa0182030:CDS
GCCGCCATATACAAGAATAT+AGG 0.480158 1_4:-70456929 None:intergenic
TGGTTGATTTGCCATGTCCT+TGG 0.486730 1_4:-70456743 None:intergenic
TCGATTAGATGAATTATGCT+TGG 0.487568 1_4:+70454045 None:intergenic
ACTACGTGAGATGGTTGAAA+AGG 0.493284 1_4:+70457026 Msa0182030:CDS
AGCTTCTTAGGACAGAGGAC+AGG 0.494425 1_4:+70456983 Msa0182030:CDS
AGAAACTTATCCTTATGTAT+GGG 0.501079 1_4:+70456903 Msa0182030:CDS
TTCTAATAATTCTGCCAAAG+TGG 0.501415 1_4:+70457071 Msa0182030:CDS
TCTGCCAAAGTGGTTGAAAA+GGG 0.502981 1_4:+70457081 Msa0182030:CDS
ATATAGGAACCCCATACATA+AGG 0.508413 1_4:-70456913 None:intergenic
TCCTATATTCTTGTATATGG+CGG 0.516713 1_4:+70456928 Msa0182030:CDS
ATGTTGCAATGTAGGCTACT+TGG 0.523428 1_4:-70457127 None:intergenic
CATAAAGCCTGCAGCAGGAG+GGG 0.525453 1_4:-70456839 None:intergenic
CTTCAACATTGACTCTTGAA+AGG 0.525828 1_4:+70455510 Msa0182030:CDS
TCCTCACCAGTTTCCAGGAT+AGG 0.526596 1_4:-70456802 None:intergenic
TCCATAAAGCCTGCAGCAGG+AGG 0.530529 1_4:-70456841 None:intergenic
TTAGGACAGAGGACAGGGTA+CGG 0.537011 1_4:+70456989 Msa0182030:CDS
GTCGGTGGCTCTTCTGCTAA+GGG 0.540392 1_4:+70456661 Msa0182030:CDS
GAATCCATAAAGCCTGCAGC+AGG 0.543830 1_4:-70456844 None:intergenic
TAGGACAGAGGACAGGGTAC+GGG 0.558112 1_4:+70456990 Msa0182030:CDS
GGAAGGAATCTCAGAAGATG+TGG 0.565631 1_4:-70457106 None:intergenic
GAAACTTATCCTTATGTATG+GGG 0.570070 1_4:+70456904 Msa0182030:CDS
GAACGACAGCACAGAGCTCA+TGG 0.580726 1_4:+70454546 Msa0182030:CDS
TCAAGCAAGACTACGTGAGA+TGG 0.592566 1_4:+70457017 Msa0182030:CDS
TGAACTGTTTGATCACCGAA+AGG 0.606335 1_4:-70455536 None:intergenic
CCATAAAGCCTGCAGCAGGA+GGG 0.618716 1_4:-70456840 None:intergenic
TAGCTGGAACACTCCAGCCA+AGG 0.621030 1_4:+70456726 Msa0182030:CDS
GAACACTCCAGCCAAGGACA+TGG 0.636957 1_4:+70456732 Msa0182030:CDS
GCTTCTTAGGACAGAGGACA+GGG 0.639564 1_4:+70456984 Msa0182030:CDS
ACCTATCCTGGAAACTGGTG+AGG 0.641675 1_4:+70456801 Msa0182030:CDS
TGCAATGTAGGCTACTTGGA+AGG 0.646398 1_4:-70457123 None:intergenic
ACTGGCGAGGATCAAGTAGT+CGG 0.654403 1_4:+70456643 Msa0182030:CDS
TAGAAAGCTTCTTAGGACAG+AGG 0.663471 1_4:+70456978 Msa0182030:CDS
ACTGGTGAGGACCAAGTAGT+CGG 0.664340 1_4:+70456814 Msa0182030:CDS
GGCGAGGATCAAGTAGTCGG+TGG 0.665719 1_4:+70456646 Msa0182030:CDS
ACTTATCCAGAAAACTGGCG+AGG 0.696112 1_4:+70456630 Msa0182030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTTAGTATTTCATTAT+GGG + chr1_4:70454512-70454531 Msa0182030:intron 10.0%
!! ATGAAATAAATTAAATTAAG+GGG - chr1_4:70454771-70454790 None:intergenic 10.0%
!! TATAAATAAAATTATCAAAG+AGG - chr1_4:70455647-70455666 None:intergenic 10.0%
!!! TTATACTATGAACAAATTTT+TGG + chr1_4:70454136-70454155 Msa0182030:intron 15.0%
!!! TATACTATGAACAAATTTTT+GGG + chr1_4:70454137-70454156 Msa0182030:intron 15.0%
!! ATTTGTATCAAATTATAAGT+CGG - chr1_4:70454496-70454515 None:intergenic 15.0%
!!! CAAATTTTAGTATTTCATTA+TGG + chr1_4:70454511-70454530 Msa0182030:intron 15.0%
!! TGAAATAAATTAAATTAAGG+GGG - chr1_4:70454770-70454789 None:intergenic 15.0%
!!! ATTTTTTAAGAGTAATACAA+TGG + chr1_4:70455421-70455440 Msa0182030:intron 15.0%
!!! TTCATTTTATTTTGACTATA+TGG - chr1_4:70456322-70456341 None:intergenic 15.0%
!! TAATTAAATGTATCATATGT+TGG + chr1_4:70456354-70456373 Msa0182030:intron 15.0%
!!! TAGAATTGAAATTGGAATTT+TGG + chr1_4:70454250-70454269 Msa0182030:intron 20.0%
!!! TTAGTTTTTAGTTACTGAAT+TGG + chr1_4:70454277-70454296 Msa0182030:intron 20.0%
!! GAATGTTAATTAGTTAGAAT+TGG + chr1_4:70454323-70454342 Msa0182030:intron 20.0%
!! TAATTAGTTAGAATTGGAAT+TGG + chr1_4:70454329-70454348 Msa0182030:intron 20.0%
!! GGAAAGTAATTATAGTTATT+TGG - chr1_4:70454575-70454594 None:intergenic 20.0%
!! AAATAAATTAAATTAAGGGG+GGG - chr1_4:70454768-70454787 None:intergenic 20.0%
!! GAAATAAATTAAATTAAGGG+GGG - chr1_4:70454769-70454788 None:intergenic 20.0%
!!! AATACAAGTTTTCAATTTGT+AGG - chr1_4:70454989-70455008 None:intergenic 20.0%
!!! GGATTCAATGTTATTTAAAT+TGG + chr1_4:70455295-70455314 Msa0182030:intron 20.0%
!! GTGAAAAATTAATTGATCTA+CGG + chr1_4:70455317-70455336 Msa0182030:intron 20.0%
!! TATAATATCTTAGTTAGTAC+TGG + chr1_4:70455663-70455682 Msa0182030:intron 20.0%
!! ATATCCACTATACATTTATA+GGG - chr1_4:70456093-70456112 None:intergenic 20.0%
!! AATATCCACTATACATTTAT+AGG - chr1_4:70456094-70456113 None:intergenic 20.0%
!! GGCTTATAATAATATACATA+TGG + chr1_4:70456381-70456400 Msa0182030:intron 20.0%
!!! TGCAGTTTTTCTTTAATTAT+CGG + chr1_4:70456533-70456552 Msa0182030:intron 20.0%
!! TTATGGATTCATTGAAAAAT+CGG + chr1_4:70456686-70456705 Msa0182030:CDS 20.0%
!!! ATGAACAAATTTTTGGGAAT+TGG + chr1_4:70454143-70454162 Msa0182030:intron 25.0%
!!! TGAACAAATTTTTGGGAATT+GGG + chr1_4:70454144-70454163 Msa0182030:intron 25.0%
!!! AAATTTTGTTTGTCATGAAC+AGG + chr1_4:70454172-70454191 Msa0182030:intron 25.0%
!!! GTTATGAACACTTTTTTTGT+TGG + chr1_4:70454226-70454245 Msa0182030:intron 25.0%
!! TTGTTGGTTAGAATTGAAAT+TGG + chr1_4:70454242-70454261 Msa0182030:intron 25.0%
! ATGCATTAACTACATAGAAT+TGG + chr1_4:70454301-70454320 Msa0182030:intron 25.0%
! TAGAATTGGAATTGGAATTT+CGG + chr1_4:70454337-70454356 Msa0182030:intron 25.0%
! TTAGTATTTCATTATGGGAA+TGG + chr1_4:70454517-70454536 Msa0182030:intron 25.0%
! TAGTATTTCATTATGGGAAT+GGG + chr1_4:70454518-70454537 Msa0182030:intron 25.0%
! TCAATTTGTAGGTTTAAGTA+GGG - chr1_4:70454978-70454997 None:intergenic 25.0%
! TTCAATTTGTAGGTTTAAGT+AGG - chr1_4:70454979-70454998 None:intergenic 25.0%
!!! TTTTGTTGGTTAAATGTGTT+TGG + chr1_4:70455111-70455130 Msa0182030:intron 25.0%
!! TTTGTTGGTTAAATGTGTTT+GGG + chr1_4:70455112-70455131 Msa0182030:intron 25.0%
! AAATTAATTGATCTACGGTT+TGG + chr1_4:70455322-70455341 Msa0182030:intron 25.0%
!!! TTTGGTGCTTAAAAATTGAT+CGG + chr1_4:70455340-70455359 Msa0182030:intron 25.0%
!! AAATTGATGCATTTTGTAAG+AGG + chr1_4:70455456-70455475 Msa0182030:CDS 25.0%
! TATACAATTTGCATCTTTGT+TGG - chr1_4:70455489-70455508 None:intergenic 25.0%
!!! TTTTTCGAATATTGCAAGTT+TGG - chr1_4:70455571-70455590 None:intergenic 25.0%
! AATATTCGAAAAAGTCACAA+TGG + chr1_4:70455578-70455597 Msa0182030:intron 25.0%
!!! ATTATCAAAGAGGCATTTTT+CGG - chr1_4:70455637-70455656 None:intergenic 25.0%
! TTAGTACTATGTAAACATTC+AGG + chr1_4:70455735-70455754 Msa0182030:intron 25.0%
!!! ATATTTTGTCTGTGTTTTGA+TGG + chr1_4:70455965-70455984 Msa0182030:intron 25.0%
!!! AGTTGTTTCTATAATATGCT+TGG + chr1_4:70456008-70456027 Msa0182030:intron 25.0%
!!! GTTGTTTCTATAATATGCTT+GGG + chr1_4:70456009-70456028 Msa0182030:intron 25.0%
!!! CTTTAAAGTTTATTAGCATG+TGG + chr1_4:70456054-70456073 Msa0182030:intron 25.0%
! CATCAAGAAAATGGATAAAT+TGG - chr1_4:70456190-70456209 None:intergenic 25.0%
!! CAATTTATCCATTTTCTTGA+TGG + chr1_4:70456188-70456207 Msa0182030:intron 25.0%
!!! AGAAGTTTGTTATATGATGA+GGG - chr1_4:70456265-70456284 None:intergenic 25.0%
!!! TAGAAGTTTGTTATATGATG+AGG - chr1_4:70456266-70456285 None:intergenic 25.0%
!!! TTATTTTGACTATATGGTGA+AGG - chr1_4:70456316-70456335 None:intergenic 25.0%
! ATCAAAAAATCATAGATAGC+TGG + chr1_4:70456710-70456729 Msa0182030:CDS 25.0%
! TTATGGATTCATTGGAAAAT+CGG + chr1_4:70456857-70456876 Msa0182030:CDS 25.0%
! AGAAACTTATCCTTATGTAT+GGG + chr1_4:70456903-70456922 Msa0182030:CDS 25.0%
! AAGAAGCTTTCTATATCTAT+AGG - chr1_4:70456971-70456990 None:intergenic 25.0%
! ATAGATATAGAAAGCTTCTT+AGG + chr1_4:70456971-70456990 Msa0182030:CDS 25.0%
!!! TTAATTGGTTTTGTGCATTG+TGG + chr1_4:70454073-70454092 Msa0182030:intron 30.0%
ACTTGAGAAACCTTAAAACA+GGG - chr1_4:70454822-70454841 None:intergenic 30.0%
GTATGAAAATGAAGAGTGAA+GGG - chr1_4:70454918-70454937 None:intergenic 30.0%
AGTATGAAAATGAAGAGTGA+AGG - chr1_4:70454919-70454938 None:intergenic 30.0%
! CTCTTCATTTTCATACTTTC+AGG + chr1_4:70454922-70454941 Msa0182030:intron 30.0%
ACTAAAAGACACCAAATAGT+CGG - chr1_4:70455153-70455172 None:intergenic 30.0%
!!! ACTATTTGGTGTCTTTTAGT+TGG + chr1_4:70455153-70455172 Msa0182030:intron 30.0%
!!! GAGGTGTTATTTTTTTTCTG+CGG + chr1_4:70455219-70455238 Msa0182030:intron 30.0%
!!! AGGTGTTATTTTTTTTCTGC+GGG + chr1_4:70455220-70455239 Msa0182030:intron 30.0%
!!! TTATCAAAGAGGCATTTTTC+GGG - chr1_4:70455636-70455655 None:intergenic 30.0%
ATAGTACTAACAGAGACATT+GGG - chr1_4:70455725-70455744 None:intergenic 30.0%
! AGCAACAGAATTGCAATTTT+TGG - chr1_4:70455805-70455824 None:intergenic 30.0%
!! TGCTTAGTTTTCTTTTTGCT+TGG + chr1_4:70455821-70455840 Msa0182030:intron 30.0%
!! TTAGTTTTCTTTTTGCTTGG+TGG + chr1_4:70455824-70455843 Msa0182030:intron 30.0%
! TAGTTTTCTTTTTGCTTGGT+GGG + chr1_4:70455825-70455844 Msa0182030:intron 30.0%
TGAACCCTATAAATGTATAG+TGG + chr1_4:70456086-70456105 Msa0182030:intron 30.0%
TCAATGAACCATCAAGAAAA+TGG - chr1_4:70456199-70456218 None:intergenic 30.0%
!! TTTTCTTGATGGTTCATTGA+TGG + chr1_4:70456199-70456218 Msa0182030:intron 30.0%
! TTTCTTGATGGTTCATTGAT+GGG + chr1_4:70456200-70456219 Msa0182030:intron 30.0%
AAATCAAGTATCACGTTGAT+AGG + chr1_4:70456232-70456251 Msa0182030:intron 30.0%
AATCAAGTATCACGTTGATA+GGG + chr1_4:70456233-70456252 Msa0182030:intron 30.0%
AATGTATCATATGTTGGACT+TGG + chr1_4:70456360-70456379 Msa0182030:intron 30.0%
CTTTGATGCTGTTGTATATA+AGG + chr1_4:70456448-70456467 Msa0182030:intron 30.0%
TTTCTTTAATTATCGGTAGC+TGG + chr1_4:70456540-70456559 Msa0182030:intron 30.0%
!!! GCTTGTTGCTTTTCATTATT+TGG - chr1_4:70456766-70456785 None:intergenic 30.0%
CAGAAACTTATCCTTATGTA+TGG + chr1_4:70456902-70456921 Msa0182030:CDS 30.0%
GAAACTTATCCTTATGTATG+GGG + chr1_4:70456904-70456923 Msa0182030:CDS 30.0%
GGTTCCTATATTCTTGTATA+TGG + chr1_4:70456925-70456944 Msa0182030:CDS 30.0%
TCCTATATTCTTGTATATGG+CGG + chr1_4:70456928-70456947 Msa0182030:CDS 30.0%
TTCTAATAATTCTGCCAAAG+TGG + chr1_4:70457071-70457090 Msa0182030:CDS 30.0%
CTAGACATTTAGTCTATGTG+TGG - chr1_4:70454387-70454406 None:intergenic 35.0%
!! AAGTCTATTTTGGGTGGAAT+TGG + chr1_4:70454419-70454438 Msa0182030:intron 35.0%
TTTCATTATGGGAATGGGAA+TGG + chr1_4:70454523-70454542 Msa0182030:CDS 35.0%
TTCATTATGGGAATGGGAAT+GGG + chr1_4:70454524-70454543 Msa0182030:CDS 35.0%
ATTACATCAGCCATTGTTCT+CGG + chr1_4:70454663-70454682 Msa0182030:intron 35.0%
! ATGTGTTATTCCGAGAACAA+TGG - chr1_4:70454676-70454695 None:intergenic 35.0%
! ACACAAATACCCCTGTTTTA+AGG + chr1_4:70454809-70454828 Msa0182030:intron 35.0%
CTTGAGAAACCTTAAAACAG+GGG - chr1_4:70454821-70454840 None:intergenic 35.0%
GACTTGAGAAACCTTAAAAC+AGG - chr1_4:70454823-70454842 None:intergenic 35.0%
ACAGACACTCTGTAAATGTA+GGG - chr1_4:70455059-70455078 None:intergenic 35.0%
TACAGACACTCTGTAAATGT+AGG - chr1_4:70455060-70455079 None:intergenic 35.0%
! TACATTTACAGAGTGTCTGT+AGG + chr1_4:70455059-70455078 Msa0182030:intron 35.0%
! ACATTTACAGAGTGTCTGTA+GGG + chr1_4:70455060-70455079 Msa0182030:intron 35.0%
TAGGGTTTATAAGTGGTTTG+CGG + chr1_4:70455078-70455097 Msa0182030:intron 35.0%
!! TTATAAGTGGTTTGCGGTTT+TGG + chr1_4:70455084-70455103 Msa0182030:intron 35.0%
AAATAGTCGGACACTTAGTT+AGG - chr1_4:70455140-70455159 None:intergenic 35.0%
TAACTAAGTGTCCGACTATT+TGG + chr1_4:70455139-70455158 Msa0182030:intron 35.0%
!!! AGTTGGCTGAATGTGTTTTT+TGG + chr1_4:70455170-70455189 Msa0182030:intron 35.0%
!!! TGTGTTTTTTGGTCAGTATC+AGG + chr1_4:70455181-70455200 Msa0182030:intron 35.0%
!!! GGTGTTATTTTTTTTCTGCG+GGG + chr1_4:70455221-70455240 Msa0182030:intron 35.0%
GAACTCAATGTTTACTGTTG+TGG + chr1_4:70455274-70455293 Msa0182030:intron 35.0%
!! CTTCAACATTGACTCTTGAA+AGG + chr1_4:70455510-70455529 Msa0182030:CDS 35.0%
ACTCTTGAAAGGAATCCTTT+CGG + chr1_4:70455521-70455540 Msa0182030:CDS 35.0%
!!! TATCAAAGAGGCATTTTTCG+GGG - chr1_4:70455635-70455654 None:intergenic 35.0%
CATAGTACTAACAGAGACAT+TGG - chr1_4:70455726-70455745 None:intergenic 35.0%
GCATTACAGATAATCTGCAA+TGG - chr1_4:70456122-70456141 None:intergenic 35.0%
ACAGTAAACAGTAAGTGAGA+AGG - chr1_4:70456165-70456184 None:intergenic 35.0%
! GGTAGAGTAAATTTTGTGCA+TGG - chr1_4:70456295-70456314 None:intergenic 35.0%
!!! TGGTTGATTTGCCATTTTCT+TGG - chr1_4:70456575-70456594 None:intergenic 35.0%
!!! GCTTGCTGCTTTTCATTATT+TGG - chr1_4:70456595-70456614 None:intergenic 35.0%
ATATAGGAACCCCATACATA+AGG - chr1_4:70456916-70456935 None:intergenic 35.0%
CACCCAAAATAGACTTACAG+GGG - chr1_4:70454415-70454434 None:intergenic 40.0%
CCACCCAAAATAGACTTACA+GGG - chr1_4:70454416-70454435 None:intergenic 40.0%
TCCACCCAAAATAGACTTAC+AGG - chr1_4:70454417-70454436 None:intergenic 40.0%
TCACCTGAAATCATGAGTTG+AGG + chr1_4:70454448-70454467 Msa0182030:intron 40.0%
! CACCTGAAATCATGAGTTGA+GGG + chr1_4:70454449-70454468 Msa0182030:intron 40.0%
ATCCCTCAACTCATGATTTC+AGG - chr1_4:70454454-70454473 None:intergenic 40.0%
! ATGAGTTGAGGGATGAGTTA+CGG + chr1_4:70454460-70454479 Msa0182030:intron 40.0%
TGACTTATGCAGCAATTTCG+AGG - chr1_4:70454596-70454615 None:intergenic 40.0%
GCATAAGTCAAAGCTTCATC+TGG + chr1_4:70454606-70454625 Msa0182030:intron 40.0%
ATGTAATCCAGAGAACAAGG+TGG - chr1_4:70454650-70454669 None:intergenic 40.0%
CTGATGTAATCCAGAGAACA+AGG - chr1_4:70454653-70454672 None:intergenic 40.0%
CTGAATGGAGAAAGAGACTA+GGG - chr1_4:70454702-70454721 None:intergenic 40.0%
CTAGTCTCTTTCTCCATTCA+GGG + chr1_4:70454701-70454720 Msa0182030:intron 40.0%
GTGTCTGTAGGGTTTATAAG+TGG + chr1_4:70455071-70455090 Msa0182030:intron 40.0%
!! TTTTTGGTCAGTATCAGGTG+TGG + chr1_4:70455186-70455205 Msa0182030:intron 40.0%
ATTGATCGGTTAACAGTCAG+TGG + chr1_4:70455354-70455373 Msa0182030:intron 40.0%
TGAACTGTTTGATCACCGAA+AGG - chr1_4:70455539-70455558 None:intergenic 40.0%
ACTAAGAGCAAGGTCAAACT+TGG - chr1_4:70455702-70455721 None:intergenic 40.0%
TCAGAACAGGAAAACAGAGA+GGG - chr1_4:70455775-70455794 None:intergenic 40.0%
ATCAGAACAGGAAAACAGAG+AGG - chr1_4:70455776-70455795 None:intergenic 40.0%
! TCTGTTTTCCTGTTCTGATC+AGG + chr1_4:70455777-70455796 Msa0182030:intron 40.0%
! CTGTTTTCCTGTTCTGATCA+GGG + chr1_4:70455778-70455797 Msa0182030:intron 40.0%
GGAACACTTAGCCAAGAAAA+TGG + chr1_4:70456561-70456580 Msa0182030:CDS 40.0%
TGGATAAGTGCTTCAGAACT+TGG - chr1_4:70456619-70456638 None:intergenic 40.0%
! GAAGCACTTATCCAGAAAAC+TGG + chr1_4:70456625-70456644 Msa0182030:CDS 40.0%
! TGCAGGCTTTATGGATTCAT+TGG + chr1_4:70456849-70456868 Msa0182030:CDS 40.0%
GCCGCCATATACAAGAATAT+AGG - chr1_4:70456932-70456951 None:intergenic 40.0%
ATTCTTGTATATGGCGGCTT+TGG + chr1_4:70456934-70456953 Msa0182030:CDS 40.0%
TAGAAAGCTTCTTAGGACAG+AGG + chr1_4:70456978-70456997 Msa0182030:CDS 40.0%
ACTACGTGAGATGGTTGAAA+AGG + chr1_4:70457026-70457045 Msa0182030:CDS 40.0%
TTCTGCCAAAGTGGTTGAAA+AGG + chr1_4:70457080-70457099 Msa0182030:CDS 40.0%
TCTGCCAAAGTGGTTGAAAA+GGG + chr1_4:70457081-70457100 Msa0182030:CDS 40.0%
CCAAAATAGACTTACAGGGG+CGG - chr1_4:70454412-70454431 None:intergenic 45.0%
! CGCCCCTGTAAGTCTATTTT+GGG + chr1_4:70454410-70454429 Msa0182030:intron 45.0%
!! CCCTGTAAGTCTATTTTGGG+TGG + chr1_4:70454413-70454432 Msa0182030:intron 45.0%
AAAACTGCCACCTTGTTCTC+TGG + chr1_4:70454640-70454659 Msa0182030:intron 45.0%
CCTGAATGGAGAAAGAGACT+AGG - chr1_4:70454703-70454722 None:intergenic 45.0%
CCTAGTCTCTTTCTCCATTC+AGG + chr1_4:70454700-70454719 Msa0182030:intron 45.0%
CACACATGATGCTAGAGAGA+CGG - chr1_4:70454861-70454880 None:intergenic 45.0%
!!! GCGGTTTTGGCTCTTTTTGT+TGG + chr1_4:70455097-70455116 Msa0182030:intron 45.0%
AGTCAGTGGCTGTAACAGTT+TGG + chr1_4:70455368-70455387 Msa0182030:intron 45.0%
CGGTGATCAAACAGTTCAAC+TGG + chr1_4:70455541-70455560 Msa0182030:intron 45.0%
AGACATTGGGACTAAGAGCA+AGG - chr1_4:70455712-70455731 None:intergenic 45.0%
AGAACAGGAAAACAGAGAGG+GGG - chr1_4:70455773-70455792 None:intergenic 45.0%
CAGAACAGGAAAACAGAGAG+GGG - chr1_4:70455774-70455793 None:intergenic 45.0%
! TTTTGGACCCTGATCAGAAC+AGG - chr1_4:70455788-70455807 None:intergenic 45.0%
GCTATGTTGCTACATGCTGT+TGG + chr1_4:70455880-70455899 Msa0182030:intron 45.0%
TGTTGCTACATGCTGTTGGT+TGG + chr1_4:70455884-70455903 Msa0182030:intron 45.0%
!! GCAGTGCTGAAAAGTATCAC+TGG + chr1_4:70456507-70456526 Msa0182030:intron 45.0%
ACTTATCCAGAAAACTGGCG+AGG + chr1_4:70456630-70456649 Msa0182030:CDS 45.0%
CTCTTCTGCTAAGGGCTTTA+TGG + chr1_4:70456669-70456688 Msa0182030:CDS 45.0%
!! TGGTTGATTTGCCATGTCCT+TGG - chr1_4:70456746-70456765 None:intergenic 45.0%
! TATATGGCGGCTTTGGTCTT+TGG + chr1_4:70456941-70456960 Msa0182030:CDS 45.0%
TCAAGCAAGACTACGTGAGA+TGG + chr1_4:70457017-70457036 Msa0182030:CDS 45.0%
! GGAACCCTTTTCAACCACTT+TGG - chr1_4:70457088-70457107 None:intergenic 45.0%
GGAAGGAATCTCAGAAGATG+TGG - chr1_4:70457109-70457128 None:intergenic 45.0%
!! TATGAAATAAATTAAATTAA+GGG - chr1_4:70454772-70454791 None:intergenic 5.0%
!! TTATGAAATAAATTAAATTA+AGG - chr1_4:70454773-70454792 None:intergenic 5.0%
!! TTTATTTCATAAATAATATT+AGG + chr1_4:70454781-70454800 Msa0182030:intron 5.0%
! CCGCCCCTGTAAGTCTATTT+TGG + chr1_4:70454409-70454428 Msa0182030:intron 50.0%
!!! GGTGGCAGTTTTTGAAGCCA+CGG - chr1_4:70454632-70454651 None:intergenic 50.0%
TCTCCATTCAGGGACAGTGA+CGG + chr1_4:70454711-70454730 Msa0182030:intron 50.0%
!! GGACAGTGACGGATCTCTTT+GGG + chr1_4:70454722-70454741 Msa0182030:intron 50.0%
TTGGGAGCCCAAAGATGTGA+TGG + chr1_4:70454740-70454759 Msa0182030:intron 50.0%
TTGGTCAGTATCAGGTGTGG+TGG + chr1_4:70455189-70455208 Msa0182030:intron 50.0%
TGGTCAGTATCAGGTGTGGT+GGG + chr1_4:70455190-70455209 Msa0182030:intron 50.0%
AACAGAGAGGGGGCAAGAAA+AGG - chr1_4:70455763-70455782 None:intergenic 50.0%
! CTTGATCCTCGCCAGTTTTC+TGG - chr1_4:70456639-70456658 None:intergenic 50.0%
ACTGGCGAGGATCAAGTAGT+CGG + chr1_4:70456643-70456662 Msa0182030:CDS 50.0%
! TGATTTGCCATGTCCTTGGC+TGG - chr1_4:70456742-70456761 None:intergenic 50.0%
! AGGATAGGTGCTGCAGAACT+TGG - chr1_4:70456790-70456809 None:intergenic 50.0%
AAGTTCTGCAGCACCTATCC+TGG + chr1_4:70456789-70456808 Msa0182030:CDS 50.0%
ACCTATCCTGGAAACTGGTG+AGG + chr1_4:70456801-70456820 Msa0182030:CDS 50.0%
TCCTCACCAGTTTCCAGGAT+AGG - chr1_4:70456805-70456824 None:intergenic 50.0%
ACTGGTGAGGACCAAGTAGT+CGG + chr1_4:70456814-70456833 Msa0182030:CDS 50.0%
GAATCCATAAAGCCTGCAGC+AGG - chr1_4:70456847-70456866 None:intergenic 50.0%
AGCTTCTTAGGACAGAGGAC+AGG + chr1_4:70456983-70457002 Msa0182030:CDS 50.0%
GCTTCTTAGGACAGAGGACA+GGG + chr1_4:70456984-70457003 Msa0182030:CDS 50.0%
TTAGGACAGAGGACAGGGTA+CGG + chr1_4:70456989-70457008 Msa0182030:CDS 50.0%
GAACGACAGCACAGAGCTCA+TGG + chr1_4:70454546-70454565 Msa0182030:CDS 55.0%
GTCAAAGCTTCATCTGGCCG+TGG + chr1_4:70454612-70454631 Msa0182030:intron 55.0%
GATCCGTCACTGTCCCTGAA+TGG - chr1_4:70454717-70454736 None:intergenic 55.0%
!! GGGACAGTGACGGATCTCTT+TGG + chr1_4:70454721-70454740 Msa0182030:intron 55.0%
!! GGGGGTGCCATCACATCTTT+GGG - chr1_4:70454750-70454769 None:intergenic 55.0%
! TCAGTATCAGGTGTGGTGGG+AGG + chr1_4:70455193-70455212 Msa0182030:intron 55.0%
! CAGTATCAGGTGTGGTGGGA+GGG + chr1_4:70455194-70455213 Msa0182030:intron 55.0%
! AGTATCAGGTGTGGTGGGAG+GGG + chr1_4:70455195-70455214 Msa0182030:intron 55.0%
AGTCGGTGGCTCTTCTGCTA+AGG + chr1_4:70456660-70456679 Msa0182030:CDS 55.0%
GTCGGTGGCTCTTCTGCTAA+GGG + chr1_4:70456661-70456680 Msa0182030:CDS 55.0%
TAGCTGGAACACTCCAGCCA+AGG + chr1_4:70456726-70456745 Msa0182030:CDS 55.0%
GAACACTCCAGCCAAGGACA+TGG + chr1_4:70456732-70456751 Msa0182030:CDS 55.0%
GCAGCACCTATCCTGGAAAC+TGG + chr1_4:70456796-70456815 Msa0182030:CDS 55.0%
CTTGGTCCTCACCAGTTTCC+AGG - chr1_4:70456810-70456829 None:intergenic 55.0%
CATAAAGCCTGCAGCAGGAG+GGG - chr1_4:70456842-70456861 None:intergenic 55.0%
CCATAAAGCCTGCAGCAGGA+GGG - chr1_4:70456843-70456862 None:intergenic 55.0%
TCCATAAAGCCTGCAGCAGG+AGG - chr1_4:70456844-70456863 None:intergenic 55.0%
TAGGACAGAGGACAGGGTAC+GGG + chr1_4:70456990-70457009 Msa0182030:CDS 55.0%
!! GGGGGGTGCCATCACATCTT+TGG - chr1_4:70454751-70454770 None:intergenic 60.0%
TGTGCACGCCTCTCACTCCT+CGG + chr1_4:70454877-70454896 Msa0182030:intron 60.0%
GAGTGAGACCGAGGAGTGAG+AGG - chr1_4:70454888-70454907 None:intergenic 60.0%
CTCACTCCTCGGTCTCACTC+AGG + chr1_4:70454888-70454907 Msa0182030:intron 60.0%
GGAATGCCTGAGTGAGACCG+AGG - chr1_4:70454897-70454916 None:intergenic 60.0%
GGCGAGGATCAAGTAGTCGG+TGG + chr1_4:70456646-70456665 Msa0182030:CDS 60.0%
CCCTCCTGCTGCAGGCTTTA+TGG + chr1_4:70456840-70456859 Msa0182030:CDS 60.0%
!! CAGGAGGGGCACCGACTACT+TGG - chr1_4:70456828-70456847 None:intergenic 65.0%
! CAGGTGTGGTGGGAGGGGTG+AGG + chr1_4:70455200-70455219 Msa0182030:intron 70.0%
! GTCGGTGCCCCTCCTGCTGC+AGG + chr1_4:70456832-70456851 Msa0182030:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 70454060 70457134 70454060 ID=Msa0182030;Name=Msa0182030
chr1_4 mRNA 70454060 70457134 70454060 ID=Msa0182030-mRNA-1;Parent=Msa0182030;Name=Msa0182030-mRNA-1;_AED=0.18;_eAED=0.20;_QI=0|0|0|0.28|1|1|7|0|257
chr1_4 exon 70454060 70454066 70454060 ID=Msa0182030-mRNA-1:exon:23492;Parent=Msa0182030-mRNA-1
chr1_4 exon 70454521 70454567 70454521 ID=Msa0182030-mRNA-1:exon:23493;Parent=Msa0182030-mRNA-1
chr1_4 exon 70455197 70455202 70455197 ID=Msa0182030-mRNA-1:exon:23494;Parent=Msa0182030-mRNA-1
chr1_4 exon 70455431 70455553 70455431 ID=Msa0182030-mRNA-1:exon:23495;Parent=Msa0182030-mRNA-1
chr1_4 exon 70455676 70455684 70455676 ID=Msa0182030-mRNA-1:exon:23496;Parent=Msa0182030-mRNA-1
chr1_4 exon 70456070 70456075 70456070 ID=Msa0182030-mRNA-1:exon:23497;Parent=Msa0182030-mRNA-1
chr1_4 exon 70456559 70457134 70456559 ID=Msa0182030-mRNA-1:exon:23498;Parent=Msa0182030-mRNA-1
chr1_4 CDS 70454060 70454066 70454060 ID=Msa0182030-mRNA-1:cds;Parent=Msa0182030-mRNA-1
chr1_4 CDS 70454521 70454567 70454521 ID=Msa0182030-mRNA-1:cds;Parent=Msa0182030-mRNA-1
chr1_4 CDS 70455197 70455202 70455197 ID=Msa0182030-mRNA-1:cds;Parent=Msa0182030-mRNA-1
chr1_4 CDS 70455431 70455553 70455431 ID=Msa0182030-mRNA-1:cds;Parent=Msa0182030-mRNA-1
chr1_4 CDS 70455676 70455684 70455676 ID=Msa0182030-mRNA-1:cds;Parent=Msa0182030-mRNA-1
chr1_4 CDS 70456070 70456075 70456070 ID=Msa0182030-mRNA-1:cds;Parent=Msa0182030-mRNA-1
chr1_4 CDS 70456559 70457134 70456559 ID=Msa0182030-mRNA-1:cds;Parent=Msa0182030-mRNA-1
Gene Sequence

>Msa0182030

ATGCTTGTATTTCATTATGGGAATGGGAATGGGAACGACAGCACAGAGCTCATGTATCAGAGTAATACAATGGTTAAACATAAGAAAATTGATGCATTTTGTAAGAGGAAAGTTTCCAACAAAGATGCAAATTGTATAGCTTCAACATTGACTCTTGAAAGGAATCCTTTCGGTGATCAAACATTAGTACTGCATGTGCTGGAACACTTAGCCAAGAAAATGGCAAATCAACCAAATAATGAAAAGCAGCAAGCACCAAGTTCTGAAGCACTTATCCAGAAAACTGGCGAGGATCAAGTAGTCGGTGGCTCTTCTGCTAAGGGCTTTATGGATTCATTGAAAAATCGGTATCAAAAAATCATAGATAGCTGGAACACTCCAGCCAAGGACATGGCAAATCAACCAAATAATGAAAAGCAACAAGCACCAAGTTCTGCAGCACCTATCCTGGAAACTGGTGAGGACCAAGTAGTCGGTGCCCCTCCTGCTGCAGGCTTTATGGATTCATTGGAAAATCGGTATAAAAAAATCAAAGAGCATGCAGAAACTTATCCTTATGTATGGGGTTCCTATATTCTTGTATATGGCGGCTTTGGTCTTTGGTTTGCCTATAGATATAGAAAGCTTCTTAGGACAGAGGACAGGGTACGGGCACTTCAAGCAAGACTACGTGAGATGGTTGAAAAGGATAAGATTGTTGAAGCTGAAAATTCTAATAATTCTGCCAAAGTGGTTGAAAAGGGTTCCACATCTTCTGAGATTCCTTCCAAGTAG

Protein sequence

>Msa0182030

MLVFHYGNGNGNDSTELMYQSNTMVKHKKIDAFCKRKVSNKDANCIASTLTLERNPFGDQTLVLHVLEHLAKKMANQPNNEKQQAPSSEALIQKTGEDQVVGGSSAKGFMDSLKNRYQKIIDSWNTPAKDMANQPNNEKQQAPSSAAPILETGEDQVVGAPPAAGFMDSLENRYKKIKEHAETYPYVWGSYILVYGGFGLWFAYRYRKLLRTEDRVRALQARLREMVEKDKIVEAENSNNSAKVVEKGSTSSEIPSK*