AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1014420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1014420 MtrunA17_Chr7g0226811 97.070 273 6 2 1 273 1 271 0.0 531
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1014420 AT5G40570.1 49.020 255 73 7 18 272 5 202 5.44e-64 199
Msa1014420 AT5G40570.2 47.710 262 73 8 18 272 5 209 4.74e-61 192
Msa1014420 AT5G14440.1 46.863 271 116 5 22 267 14 281 9.45e-58 186
Msa1014420 AT5G14440.2 47.407 270 115 6 22 267 14 280 1.35e-57 186

Find 85 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATGAAATAATTGTATAAT+TGG 0.183692 7_1:-23187798 None:intergenic
CATTGAGCTGTTCTTTCATT+TGG 0.225305 7_1:-23187975 None:intergenic
AAAAGATTTCTCAATAAATT+AGG 0.238909 7_1:+23184085 Msa1014420:CDS
GATCGATGGTGTTCAGATTC+AGG 0.265251 7_1:+23185710 Msa1014420:CDS
TGAATTTCGGTGAACCTAAT+AGG 0.277383 7_1:-23183718 None:intergenic
ATAAGTCAGAGGAACATATT+TGG 0.301067 7_1:+23184047 Msa1014420:CDS
AGACAGAAGAGGAAGACTTC+TGG 0.333633 7_1:+23185645 Msa1014420:CDS
GCTGAAGAAGGGGATGTAAT+TGG 0.333920 7_1:+23185758 Msa1014420:CDS
ACATCCCCTTCTTCAGCTTC+CGG 0.343430 7_1:-23185752 None:intergenic
ATTATGAAACAACGCGGATT+CGG 0.346996 7_1:+23187679 Msa1014420:three_prime_UTR
CACCTATTTGCTGCAAAACT+TGG 0.348795 7_1:-23187626 None:intergenic
GGAGTAAAAGGGTATGTCTT+TGG 0.354297 7_1:-23183795 None:intergenic
TTTCCGATTTCCTTGAATTT+CGG 0.355198 7_1:-23183731 None:intergenic
GGCGGAGACGACGGCGGCGG+TGG 0.359224 7_1:+23183649 Msa1014420:CDS
TTATGAAACAACGCGGATTC+GGG 0.359801 7_1:+23187680 Msa1014420:three_prime_UTR
AAAGAAGGAAGCAACCTATT+AGG 0.361574 7_1:+23183704 Msa1014420:CDS
ACTGAACTGTAACTTGTATC+AGG 0.374857 7_1:+23187708 Msa1014420:three_prime_UTR
AAGAACTTATTTCTGAAGTT+AGG 0.378235 7_1:+23185600 Msa1014420:CDS
CTTAGATTTCTCAGTAAAGA+AGG 0.383320 7_1:+23183622 Msa1014420:five_prime_UTR
CAGGAAGAAGGAATGGAAAA+TGG 0.387557 7_1:+23185458 Msa1014420:CDS
TTAATCAAGATCCTCTTTGC+CGG 0.403502 7_1:+23183888 Msa1014420:CDS
GGAGACGACGGCGGCGGTGG+AGG 0.405952 7_1:+23183652 Msa1014420:CDS
GACGACGGCGGCGGTGGAGG+TGG 0.413029 7_1:+23183655 Msa1014420:CDS
TTTCTCAGTAAAGAAGGTTA+TGG 0.416368 7_1:+23183628 Msa1014420:exon
GCCTCCTGCTGGAGAACGCT+GGG 0.429277 7_1:+23185670 Msa1014420:CDS
ACACTTCAGCTGAGACAGTT+AGG 0.433272 7_1:+23183547 None:intergenic
GACTTCTGGATGCCTCCTGC+TGG 0.436042 7_1:+23185659 Msa1014420:CDS
TGCCTCCTGCTGGAGAACGC+TGG 0.437280 7_1:+23185669 Msa1014420:CDS
TCACCGAAATTCAAGGAAAT+CGG 0.437920 7_1:+23183728 Msa1014420:CDS
CAGCTGAGACAGTTAGGTCT+TGG 0.447963 7_1:+23183553 None:intergenic
GGTTTCATAAACAGAGCAAC+AGG 0.449069 7_1:+23185439 Msa1014420:intron
CCCACGTTGTTAATTCTCAT+AGG 0.453255 7_1:+23188017 Msa1014420:three_prime_UTR
GAATTACATTATGTTAGATC+AGG 0.456672 7_1:+23187648 Msa1014420:three_prime_UTR
AGGTCTCATCGATTTCGCTT+TGG 0.467748 7_1:+23183838 Msa1014420:CDS
TTCCGGTTCTGACTCTGAAT+CGG 0.470015 7_1:-23185735 None:intergenic
ATGTAAGTTGACTGGTCATA+AGG 0.472920 7_1:+23184021 Msa1014420:CDS
CGATTCAAATGCGTAGAGAC+AGG 0.475721 7_1:+23183758 Msa1014420:CDS
ATTAGGTTCACCGAAATTCA+AGG 0.477171 7_1:+23183721 Msa1014420:CDS
CTTTCTAGAAGCAAAGCTGC+TGG 0.477926 7_1:-23187553 None:intergenic
GAGAATGTTAAGCAGAAAGA+AGG 0.478599 7_1:+23183689 Msa1014420:CDS
CTCACATAAAACTATTGAAA+AGG 0.481654 7_1:-23187747 None:intergenic
AAAAGACTGTCAATAGAAGT+TGG 0.489243 7_1:+23187528 Msa1014420:CDS
TCTTGATTAAACATATTAAG+TGG 0.493333 7_1:-23183875 None:intergenic
TTGTCCCAGCGTTCTCCAGC+AGG 0.495445 7_1:-23185674 None:intergenic
TCAGAACCGGAAGCTGAAGA+AGG 0.499166 7_1:+23185746 Msa1014420:CDS
CATATTTGGAAGCATATGAC+TGG 0.499988 7_1:+23184061 Msa1014420:CDS
ATCGATGGTGTTCAGATTCA+GGG 0.500753 7_1:+23185711 Msa1014420:CDS
CGACGAGACTTGATATATGT+TGG 0.503366 7_1:+23187593 Msa1014420:exon
GTCCGATTCAGAGTCAGAAC+CGG 0.505178 7_1:+23185733 Msa1014420:CDS
ACTGAATAAACTTCTAACTC+TGG 0.508168 7_1:+23187883 Msa1014420:three_prime_UTR
CTTTCATTTGGCATTACATG+TGG 0.516929 7_1:-23187963 None:intergenic
TATGGCGGAGACGACGGCGG+CGG 0.520239 7_1:+23183646 Msa1014420:exon
GAACGCTGGGACAACGATGA+TGG 0.522787 7_1:+23185683 Msa1014420:CDS
CAGAACCGGAAGCTGAAGAA+GGG 0.536386 7_1:+23185747 Msa1014420:CDS
AGAGCAACAGGAAGAAGGAA+TGG 0.538674 7_1:+23185451 Msa1014420:intron
TAAACAGAGCAACAGGAAGA+AGG 0.539912 7_1:+23185446 Msa1014420:intron
TGTAGATGGTGATGCTGATG+TGG 0.540196 7_1:+23187351 Msa1014420:intron
GGCGGTGGAGGTGGCGACGA+CGG 0.542074 7_1:+23183664 Msa1014420:CDS
AAAGTTATGAAATTATGCAT+TGG 0.547469 7_1:+23188110 Msa1014420:three_prime_UTR
TGAAGAAAGTGAGACAGAAG+AGG 0.556419 7_1:+23185634 Msa1014420:CDS
TTTCTAGAAGCAAAGCTGCT+GGG 0.559020 7_1:-23187552 None:intergenic
AAGTTGATATGTAAGTTGAC+TGG 0.567064 7_1:+23184013 Msa1014420:CDS
AAATTCAAGGAAATCGGAAA+CGG 0.578058 7_1:+23183734 Msa1014420:CDS
ATTTCATGATTTCACCACAA+TGG 0.589727 7_1:+23187812 Msa1014420:three_prime_UTR
TCCCAGCGTTCTCCAGCAGG+AGG 0.591225 7_1:-23185671 None:intergenic
GAAGGTTATGGCGGAGACGA+CGG 0.593940 7_1:+23183640 Msa1014420:exon
GGTGGAGGTGGCGACGACGG+AGG 0.596342 7_1:+23183667 Msa1014420:CDS
CTCAGTAAAGAAGGTTATGG+CGG 0.603988 7_1:+23183631 Msa1014420:exon
GGAAGAAATTACCGGCAAAG+AGG 0.615048 7_1:-23183899 None:intergenic
AGAGTTCATACTCACATGAG+TGG 0.620680 7_1:+23188051 Msa1014420:three_prime_UTR
CCTATGAGAATTAACAACGT+GGG 0.622358 7_1:-23188017 None:intergenic
CGCTGGGACAACGATGATGG+AGG 0.634023 7_1:+23185686 Msa1014420:CDS
AATGAATATTACAGCCATTG+TGG 0.637059 7_1:-23187826 None:intergenic
CTATGAGAATTAACAACGTG+GGG 0.639180 7_1:-23188016 None:intergenic
AGTCAGAAGAGTTATCCTCA+AGG 0.648284 7_1:+23187383 Msa1014420:CDS
TGATGCTGATGTGGATTGCA+AGG 0.649831 7_1:+23187360 Msa1014420:CDS
GAGCAGCAAAGTGTAGATTG+TGG 0.650739 7_1:+23185494 Msa1014420:CDS
ACGATGATGGAGGAGATCGA+TGG 0.656697 7_1:+23185696 Msa1014420:CDS
AGAACCGGAAGCTGAAGAAG+GGG 0.662051 7_1:+23185748 Msa1014420:CDS
TCATAAGGTTAATAAGTCAG+AGG 0.664439 7_1:+23184036 Msa1014420:CDS
GGTTATGGCGGAGACGACGG+CGG 0.669171 7_1:+23183643 Msa1014420:exon
ATATTTGGAAGCATATGACT+GGG 0.673946 7_1:+23184062 Msa1014420:CDS
AGTGTATCCGAATACTCATG+TGG 0.700828 7_1:+23188074 Msa1014420:three_prime_UTR
TCCTATGAGAATTAACAACG+TGG 0.728120 7_1:-23188018 None:intergenic
ATATGCATTATGAAACAACG+CGG 0.833664 7_1:+23187673 Msa1014420:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATTGATTCAATTTT+TGG + chr7_1:23184126-23184145 Msa1014420:intron 10.0%
!!! TAAAATTTAGAAGTATTATT+AGG - chr7_1:23186144-23186163 None:intergenic 10.0%
!!! ATTGTGTAATTTTAAATAAT+AGG - chr7_1:23186321-23186340 None:intergenic 10.0%
!!! TATTATTTAAAATTACACAA+TGG + chr7_1:23186320-23186339 Msa1014420:intron 10.0%
!!! ATTATTTAAAATTACACAAT+GGG + chr7_1:23186321-23186340 Msa1014420:intron 10.0%
!!! TTATAATAAGTTATTGTTTT+GGG - chr7_1:23186829-23186848 None:intergenic 10.0%
!!! ATTATAATAAGTTATTGTTT+TGG - chr7_1:23186830-23186849 None:intergenic 10.0%
!! AAAAGATTTCTCAATAAATT+AGG + chr7_1:23184085-23184104 Msa1014420:CDS 15.0%
!!! ACAATTTTTGTAAGTTATTT+TGG + chr7_1:23184302-23184321 Msa1014420:intron 15.0%
!! ATCTTCTTTCATAAAAATAT+AGG - chr7_1:23184497-23184516 None:intergenic 15.0%
!!! TATTTTTATGAAAGAAGATA+AGG + chr7_1:23184498-23184517 Msa1014420:intron 15.0%
!!! ATTTTTATGAAAGAAGATAA+GGG + chr7_1:23184499-23184518 Msa1014420:intron 15.0%
!!! GTTATTTCAAACAAAAAATT+GGG - chr7_1:23185121-23185140 None:intergenic 15.0%
!! GATTATAATTGTTATAACAA+AGG + chr7_1:23186021-23186040 Msa1014420:intron 15.0%
!!! ATTTTAAATAATAGGAGTTT+AGG - chr7_1:23186313-23186332 None:intergenic 15.0%
!!! ATGATTTATATTTCTTTTTC+TGG + chr7_1:23186913-23186932 Msa1014420:intron 15.0%
!! TTATTATTAATTGTCAGTTA+TGG - chr7_1:23187108-23187127 None:intergenic 15.0%
!!! CATTTTTTTTTTTTTGTAGA+TGG + chr7_1:23187337-23187356 Msa1014420:intron 15.0%
!! TCATGAAATAATTGTATAAT+TGG - chr7_1:23187801-23187820 None:intergenic 15.0%
!! TCTTGATTAAACATATTAAG+TGG - chr7_1:23183878-23183897 None:intergenic 20.0%
!!! TGTTTTAGTACTTTAATTGT+AGG + chr7_1:23184159-23184178 Msa1014420:intron 20.0%
!!! GTTTTAGTACTTTAATTGTA+GGG + chr7_1:23184160-23184179 Msa1014420:intron 20.0%
!! TTATGTATTAACTACTGTTT+GGG + chr7_1:23184207-23184226 Msa1014420:intron 20.0%
!! TATACACAAGCTATATTTAT+AGG - chr7_1:23184413-23184432 None:intergenic 20.0%
!! AACAATTTCACAAGTATTAA+TGG + chr7_1:23184609-23184628 Msa1014420:intron 20.0%
!! AAACAATCTTCAAATATAGA+GGG - chr7_1:23184670-23184689 None:intergenic 20.0%
!! AAAACAATCTTCAAATATAG+AGG - chr7_1:23184671-23184690 None:intergenic 20.0%
!!! TTTTTCAATCTAGTTTCATT+TGG + chr7_1:23184687-23184706 Msa1014420:intron 20.0%
!!! AATTTGTCATTTTGTGAATT+TGG + chr7_1:23185040-23185059 Msa1014420:intron 20.0%
!!! CGTTATTTCAAACAAAAAAT+TGG - chr7_1:23185122-23185141 None:intergenic 20.0%
!!! ATTTTTTGTTTGAAATAACG+TGG + chr7_1:23185122-23185141 Msa1014420:intron 20.0%
!!! TTTTTTGTTTGAAATAACGT+GGG + chr7_1:23185123-23185142 Msa1014420:intron 20.0%
!!! AATAGAAAGTACTAATAGTT+TGG + chr7_1:23186089-23186108 Msa1014420:intron 20.0%
!! TCTAGTAACTATATAAAAAC+TGG - chr7_1:23186351-23186370 None:intergenic 20.0%
!!! TTTTATATTTGGAAACATGA+AGG - chr7_1:23186628-23186647 None:intergenic 20.0%
!! TCCAAATATAAAAAAACAAG+AGG + chr7_1:23186635-23186654 Msa1014420:intron 20.0%
!!! TCCTCTTGTTTTTTTATATT+TGG - chr7_1:23186639-23186658 None:intergenic 20.0%
!! GAGAATATCAACAATTATTA+AGG + chr7_1:23186884-23186903 Msa1014420:intron 20.0%
!! GTCCTACAAATTTATATATA+AGG + chr7_1:23187000-23187019 Msa1014420:intron 20.0%
!! CACCTTATATATAAATTTGT+AGG - chr7_1:23187005-23187024 None:intergenic 20.0%
!!! ATCCAAGAATTTTGAATAAT+GGG - chr7_1:23187029-23187048 None:intergenic 20.0%
!! TTATGTTTAGGAATAAAACA+GGG - chr7_1:23187080-23187099 None:intergenic 20.0%
!!! CATATTATTTCTTTATTCCT+TGG + chr7_1:23187232-23187251 Msa1014420:intron 20.0%
!!! AACATATAGATTTGGTAATA+TGG - chr7_1:23187477-23187496 None:intergenic 20.0%
!! AAAGTTATGAAATTATGCAT+TGG + chr7_1:23188110-23188129 Msa1014420:three_prime_UTR 20.0%
!! TTTTTACTGTTGGAGTAAAA+GGG - chr7_1:23183809-23183828 None:intergenic 25.0%
!!! TTTTTTACTGTTGGAGTAAA+AGG - chr7_1:23183810-23183829 None:intergenic 25.0%
!!! TAAACGACATTTTTTACTGT+TGG - chr7_1:23183819-23183838 None:intergenic 25.0%
!! AACAGTAAAAAATGTCGTTT+AGG + chr7_1:23183818-23183837 Msa1014420:CDS 25.0%
!! TTTGAGACGAAAACATAAAA+GGG - chr7_1:23183934-23183953 None:intergenic 25.0%
!!! TTTTGAGACGAAAACATAAA+AGG - chr7_1:23183935-23183954 None:intergenic 25.0%
! CTTATGTATTAACTACTGTT+TGG + chr7_1:23184206-23184225 Msa1014420:intron 25.0%
! AGAAATTTGTAAAAAACCCA+TGG - chr7_1:23184726-23184745 None:intergenic 25.0%
!! TGATTTTGTCAAATTACTAG+CGG - chr7_1:23184901-23184920 None:intergenic 25.0%
!! AATTGGGTCAATCATAATTT+TGG - chr7_1:23185105-23185124 None:intergenic 25.0%
!! ATGAATGAATGTGTATTTTG+TGG + chr7_1:23185393-23185412 Msa1014420:intron 25.0%
!! TTCATTAGCTTATGCATTAA+AGG + chr7_1:23185418-23185437 Msa1014420:intron 25.0%
!!! AAGAACTTATTTCTGAAGTT+AGG + chr7_1:23185600-23185619 Msa1014420:CDS 25.0%
! TATAAGTAGCGTCTTATAAT+AGG - chr7_1:23185870-23185889 None:intergenic 25.0%
! TGTGTCTTCTTTATAAACTT+CGG - chr7_1:23185907-23185926 None:intergenic 25.0%
!! AAATTTTACTGTTCAAACTC+TGG + chr7_1:23186156-23186175 Msa1014420:intron 25.0%
!! AATTTTACTGTTCAAACTCT+GGG + chr7_1:23186157-23186176 Msa1014420:intron 25.0%
! AAAGAATTTGTGATATGTGT+GGG - chr7_1:23186553-23186572 None:intergenic 25.0%
! ACTAGTTAAAGAAACAAAAC+AGG - chr7_1:23186781-23186800 None:intergenic 25.0%
!! TAAACATATCTTAGTTGGTA+GGG - chr7_1:23186977-23186996 None:intergenic 25.0%
! TACCAACTAAGATATGTTTA+CGG + chr7_1:23186977-23186996 Msa1014420:intron 25.0%
!! TCCAAGAATTTTGAATAATG+GGG - chr7_1:23187028-23187047 None:intergenic 25.0%
!! GATCCAAGAATTTTGAATAA+TGG - chr7_1:23187030-23187049 None:intergenic 25.0%
! CTTATGTTTAGGAATAAAAC+AGG - chr7_1:23187081-23187100 None:intergenic 25.0%
! AAACTTTACCAAACTTAACA+TGG - chr7_1:23187197-23187216 None:intergenic 25.0%
!! ATTACTAGTTTCCAAACATT+AGG + chr7_1:23187425-23187444 Msa1014420:intron 25.0%
!! ATTTGGTAATATGGAAAACT+AGG - chr7_1:23187468-23187487 None:intergenic 25.0%
! AGAAACTCAACATATAGATT+TGG - chr7_1:23187485-23187504 None:intergenic 25.0%
! GAATTACATTATGTTAGATC+AGG + chr7_1:23187648-23187667 Msa1014420:three_prime_UTR 25.0%
! CTCACATAAAACTATTGAAA+AGG - chr7_1:23187750-23187769 None:intergenic 25.0%
!! AATTTTACCACATGAGTATT+CGG - chr7_1:23188084-23188103 None:intergenic 25.0%
CTTAGATTTCTCAGTAAAGA+AGG + chr7_1:23183622-23183641 Msa1014420:five_prime_UTR 30.0%
TTTCTCAGTAAAGAAGGTTA+TGG + chr7_1:23183628-23183647 Msa1014420:exon 30.0%
TTTCCGATTTCCTTGAATTT+CGG - chr7_1:23183734-23183753 None:intergenic 30.0%
AAATTCAAGGAAATCGGAAA+CGG + chr7_1:23183734-23183753 Msa1014420:CDS 30.0%
AAAAGGAAGGAAGAAATTAC+CGG - chr7_1:23183910-23183929 None:intergenic 30.0%
AACATAAAAGGGTAAAAGGA+AGG - chr7_1:23183923-23183942 None:intergenic 30.0%
CGAAAACATAAAAGGGTAAA+AGG - chr7_1:23183927-23183946 None:intergenic 30.0%
!! AAGTTGATATGTAAGTTGAC+TGG + chr7_1:23184013-23184032 Msa1014420:CDS 30.0%
TCATAAGGTTAATAAGTCAG+AGG + chr7_1:23184036-23184055 Msa1014420:CDS 30.0%
ATAAGTCAGAGGAACATATT+TGG + chr7_1:23184047-23184066 Msa1014420:CDS 30.0%
! ATATTTGGAAGCATATGACT+GGG + chr7_1:23184062-23184081 Msa1014420:CDS 30.0%
!! ATAAGTTTTGTGAGACTGTT+TGG + chr7_1:23184257-23184276 Msa1014420:intron 30.0%
!! TAAGTTTTGTGAGACTGTTT+GGG + chr7_1:23184258-23184277 Msa1014420:intron 30.0%
AATAAGCAGTTTATCCAAAC+AGG + chr7_1:23184471-23184490 Msa1014420:intron 30.0%
CATAAAAATATAGGCCTGTT+TGG - chr7_1:23184488-23184507 None:intergenic 30.0%
TCAAATAAGCCAATCCAATT+AGG + chr7_1:23184644-23184663 Msa1014420:intron 30.0%
CAAATTGTACATACGATTGA+AGG - chr7_1:23185026-23185045 None:intergenic 30.0%
TCCATCAACTAATACTAGTA+GGG - chr7_1:23185178-23185197 None:intergenic 30.0%
GAGTTTAGAGAAAATGTGTA+TGG - chr7_1:23185795-23185814 None:intergenic 30.0%
GAAGTTTATAAAGAAGACAC+AGG + chr7_1:23185906-23185925 Msa1014420:intron 30.0%
ATTGTTATAACAAAGGCCTA+AGG + chr7_1:23186028-23186047 Msa1014420:intron 30.0%
AAATCAAAGTAGTTTCATGC+CGG - chr7_1:23186120-23186139 None:intergenic 30.0%
!! CAACAGAGATTTGTTACAAA+GGG + chr7_1:23186190-23186209 Msa1014420:intron 30.0%
! ATTTGTTACAAAGGGAGAAA+AGG + chr7_1:23186198-23186217 Msa1014420:intron 30.0%
AAGGAAATACAATAGAGAGA+TGG + chr7_1:23186217-23186236 Msa1014420:intron 30.0%
TAGTTACTAGAGATAAGTAG+AGG + chr7_1:23186360-23186379 Msa1014420:intron 30.0%
GAAAGAATTTGTGATATGTG+TGG - chr7_1:23186554-23186573 None:intergenic 30.0%
TTTCTTTAACTAGTGTCTCA+GGG + chr7_1:23186787-23186806 Msa1014420:intron 30.0%
GTAAACATATCTTAGTTGGT+AGG - chr7_1:23186978-23186997 None:intergenic 30.0%
ACCAACTAAGATATGTTTAC+GGG + chr7_1:23186978-23186997 Msa1014420:intron 30.0%
GAATAAAACAGGGAAAGAAA+AGG - chr7_1:23187070-23187089 None:intergenic 30.0%
TTATCTACTACTCTGATATG+AGG + chr7_1:23187151-23187170 Msa1014420:intron 30.0%
GAGATTAGCGATATATTACA+TGG + chr7_1:23187273-23187292 Msa1014420:intron 30.0%
TACAAGAAAATTAACAGAGC+AGG + chr7_1:23187311-23187330 Msa1014420:intron 30.0%
TACTGAAGTAAAATACCTTG+AGG - chr7_1:23187401-23187420 None:intergenic 30.0%
TATTGGTAAGTCCTAATGTT+TGG - chr7_1:23187439-23187458 None:intergenic 30.0%
GGAAAACTAGGTATTACTAT+TGG - chr7_1:23187456-23187475 None:intergenic 30.0%
AAAAGACTGTCAATAGAAGT+TGG + chr7_1:23187528-23187547 Msa1014420:CDS 30.0%
ATATGCATTATGAAACAACG+CGG + chr7_1:23187673-23187692 Msa1014420:three_prime_UTR 30.0%
ATTTCATGATTTCACCACAA+TGG + chr7_1:23187812-23187831 Msa1014420:three_prime_UTR 30.0%
AATGAATATTACAGCCATTG+TGG - chr7_1:23187829-23187848 None:intergenic 30.0%
ACTGAATAAACTTCTAACTC+TGG + chr7_1:23187883-23187902 Msa1014420:three_prime_UTR 30.0%
GAGAATGTTAAGCAGAAAGA+AGG + chr7_1:23183689-23183708 Msa1014420:CDS 35.0%
AAAGAAGGAAGCAACCTATT+AGG + chr7_1:23183704-23183723 Msa1014420:CDS 35.0%
TGAATTTCGGTGAACCTAAT+AGG - chr7_1:23183721-23183740 None:intergenic 35.0%
ATTAGGTTCACCGAAATTCA+AGG + chr7_1:23183721-23183740 Msa1014420:CDS 35.0%
TCACCGAAATTCAAGGAAAT+CGG + chr7_1:23183728-23183747 Msa1014420:CDS 35.0%
TTAATCAAGATCCTCTTTGC+CGG + chr7_1:23183888-23183907 Msa1014420:CDS 35.0%
!! ACCAATAACTAACTTGTTCG+CGG - chr7_1:23183973-23183992 None:intergenic 35.0%
! ATGTAAGTTGACTGGTCATA+AGG + chr7_1:23184021-23184040 Msa1014420:CDS 35.0%
! CATATTTGGAAGCATATGAC+TGG + chr7_1:23184061-23184080 Msa1014420:CDS 35.0%
ATAAGCTCTCCAATTTAGCT+TGG + chr7_1:23184335-23184354 Msa1014420:intron 35.0%
!!! GCTGTTTTTCCAAGCTAAAT+TGG - chr7_1:23184347-23184366 None:intergenic 35.0%
TCAAATATAGAGGGCCTAAT+TGG - chr7_1:23184661-23184680 None:intergenic 35.0%
! TTGGTTGCTTTAGATATCCA+TGG + chr7_1:23184706-23184725 Msa1014420:intron 35.0%
! TGGTTGCTTTAGATATCCAT+GGG + chr7_1:23184707-23184726 Msa1014420:intron 35.0%
TTAAATGAAGTGACAAGCCT+CGG + chr7_1:23185149-23185168 Msa1014420:intron 35.0%
TCCCTACTAGTATTAGTTGA+TGG + chr7_1:23185174-23185193 Msa1014420:intron 35.0%
GTCCATCAACTAATACTAGT+AGG - chr7_1:23185179-23185198 None:intergenic 35.0%
AGAAGACACAGGAAGAAAAT+AGG + chr7_1:23185917-23185936 Msa1014420:intron 35.0%
! AAATTTTCAGTAGCGTCCTT+AGG - chr7_1:23186047-23186066 None:intergenic 35.0%
TACTAATAGTTTGGCAGAAC+CGG + chr7_1:23186098-23186117 Msa1014420:intron 35.0%
CCTTTGTAACAAATCTCTGT+TGG - chr7_1:23186192-23186211 None:intergenic 35.0%
!! CCAACAGAGATTTGTTACAA+AGG + chr7_1:23186189-23186208 Msa1014420:intron 35.0%
ATAGGCTCTCAAATTCATAG+TGG - chr7_1:23186263-23186282 None:intergenic 35.0%
! ATAATAGGAGTTTAGGACAG+AGG - chr7_1:23186306-23186325 None:intergenic 35.0%
TTTCTTTAACTAGTGCTCCA+GGG - chr7_1:23186678-23186697 None:intergenic 35.0%
GTTTCTTTAACTAGTGTCTC+AGG + chr7_1:23186786-23186805 Msa1014420:intron 35.0%
ACCCGTAAACATATCTTAGT+TGG - chr7_1:23186982-23187001 None:intergenic 35.0%
GCCCCATTATTCAAAATTCT+TGG + chr7_1:23187024-23187043 Msa1014420:intron 35.0%
GTTATGGTGTGCTTATGTTT+AGG - chr7_1:23187092-23187111 None:intergenic 35.0%
ACAACGAACCATGTTAAGTT+TGG + chr7_1:23187186-23187205 Msa1014420:intron 35.0%
! TTTTTGTTCTGCTGGGTATA+AGG - chr7_1:23187512-23187531 None:intergenic 35.0%
ATTATGAAACAACGCGGATT+CGG + chr7_1:23187679-23187698 Msa1014420:three_prime_UTR 35.0%
! ACTGAACTGTAACTTGTATC+AGG + chr7_1:23187708-23187727 Msa1014420:three_prime_UTR 35.0%
! AGCTTTTGTTCTGTTGTGAT+TGG + chr7_1:23187916-23187935 Msa1014420:three_prime_UTR 35.0%
CTTTCATTTGGCATTACATG+TGG - chr7_1:23187966-23187985 None:intergenic 35.0%
CATTGAGCTGTTCTTTCATT+TGG - chr7_1:23187978-23187997 None:intergenic 35.0%
CTATGAGAATTAACAACGTG+GGG - chr7_1:23188019-23188038 None:intergenic 35.0%
CCTATGAGAATTAACAACGT+GGG - chr7_1:23188020-23188039 None:intergenic 35.0%
TCCTATGAGAATTAACAACG+TGG - chr7_1:23188021-23188040 None:intergenic 35.0%
CTCAGTAAAGAAGGTTATGG+CGG + chr7_1:23183631-23183650 Msa1014420:exon 40.0%
! GGAGTAAAAGGGTATGTCTT+TGG - chr7_1:23183798-23183817 None:intergenic 40.0%
ACCGCGAACAAGTTAGTTAT+TGG + chr7_1:23183969-23183988 Msa1014420:intron 40.0%
TATAGAGGGCCTAATTGGAT+TGG - chr7_1:23184656-23184675 None:intergenic 40.0%
ATACCTACGAAGCACAGATA+CGG + chr7_1:23184834-23184853 Msa1014420:intron 40.0%
TATATGTGTCTGTGTCGTGT+CGG + chr7_1:23184950-23184969 Msa1014420:intron 40.0%
!! CATAATTTTGGTCCTCCAGA+TGG - chr7_1:23185093-23185112 None:intergenic 40.0%
TAATACTAGTAGGGAAACCG+AGG - chr7_1:23185169-23185188 None:intergenic 40.0%
GGTTTCATAAACAGAGCAAC+AGG + chr7_1:23185439-23185458 Msa1014420:intron 40.0%
TAAACAGAGCAACAGGAAGA+AGG + chr7_1:23185446-23185465 Msa1014420:intron 40.0%
CAGGAAGAAGGAATGGAAAA+TGG + chr7_1:23185458-23185477 Msa1014420:CDS 40.0%
TGAAGAAAGTGAGACAGAAG+AGG + chr7_1:23185634-23185653 Msa1014420:CDS 40.0%
ATCGATGGTGTTCAGATTCA+GGG + chr7_1:23185711-23185730 Msa1014420:CDS 40.0%
! AAGACACTCGAATTTCTAGG+AGG - chr7_1:23186412-23186431 None:intergenic 40.0%
TCCTAGAAATTCGAGTGTCT+TGG + chr7_1:23186411-23186430 Msa1014420:intron 40.0%
CCTAGAAATTCGAGTGTCTT+GGG + chr7_1:23186412-23186431 Msa1014420:intron 40.0%
! TGTGATATGTGTGGGCTATA+TGG - chr7_1:23186545-23186564 None:intergenic 40.0%
TCACGTGTGATTGTATGTGA+GGG - chr7_1:23186585-23186604 None:intergenic 40.0%
TTCTTTAACTAGTGCTCCAG+GGG - chr7_1:23186677-23186696 None:intergenic 40.0%
GTTTCTTTAACTAGTGCTCC+AGG - chr7_1:23186679-23186698 None:intergenic 40.0%
!! ATTCTTGGATCCGTCACTTT+TGG + chr7_1:23187039-23187058 Msa1014420:intron 40.0%
!!! TTCTTGGATCCGTCACTTTT+GGG + chr7_1:23187040-23187059 Msa1014420:intron 40.0%
AGTCAGAAGAGTTATCCTCA+AGG + chr7_1:23187383-23187402 Msa1014420:CDS 40.0%
! GACAGTCTTTTTGTTCTGCT+GGG - chr7_1:23187519-23187538 None:intergenic 40.0%
! TGACAGTCTTTTTGTTCTGC+TGG - chr7_1:23187520-23187539 None:intergenic 40.0%
! TTTCTAGAAGCAAAGCTGCT+GGG - chr7_1:23187555-23187574 None:intergenic 40.0%
CGACGAGACTTGATATATGT+TGG + chr7_1:23187593-23187612 Msa1014420:exon 40.0%
! AGCCAAGTTTTGCAGCAAAT+AGG + chr7_1:23187624-23187643 Msa1014420:three_prime_UTR 40.0%
! CACCTATTTGCTGCAAAACT+TGG - chr7_1:23187629-23187648 None:intergenic 40.0%
TTATGAAACAACGCGGATTC+GGG + chr7_1:23187680-23187699 Msa1014420:three_prime_UTR 40.0%
! GCACTCTTTTCGACGAATAT+AGG - chr7_1:23187944-23187963 None:intergenic 40.0%
CCCACGTTGTTAATTCTCAT+AGG + chr7_1:23188017-23188036 Msa1014420:three_prime_UTR 40.0%
AGAGTTCATACTCACATGAG+TGG + chr7_1:23188051-23188070 Msa1014420:three_prime_UTR 40.0%
AGTGTATCCGAATACTCATG+TGG + chr7_1:23188074-23188093 Msa1014420:three_prime_UTR 40.0%
CGATTCAAATGCGTAGAGAC+AGG + chr7_1:23183758-23183777 Msa1014420:CDS 45.0%
!! AGGTCTCATCGATTTCGCTT+TGG + chr7_1:23183838-23183857 Msa1014420:CDS 45.0%
GGAAGAAATTACCGGCAAAG+AGG - chr7_1:23183902-23183921 None:intergenic 45.0%
!! TAACTAACTTGTTCGCGGTG+CGG - chr7_1:23183968-23183987 None:intergenic 45.0%
ACAGATACGGACACAAACAC+TGG + chr7_1:23184847-23184866 Msa1014420:intron 45.0%
! TACTAGCGGTGTTAGTGTGT+CGG - chr7_1:23184887-23184906 None:intergenic 45.0%
AGGTTGTCAGCTATGAAGCA+CGG - chr7_1:23185006-23185025 None:intergenic 45.0%
! TGCGTCCATTTGTTACCATC+TGG + chr7_1:23185075-23185094 Msa1014420:intron 45.0%
! GTCCATTTGTTACCATCTGG+AGG + chr7_1:23185078-23185097 Msa1014420:intron 45.0%
GTCCTCCAGATGGTAACAAA+TGG - chr7_1:23185083-23185102 None:intergenic 45.0%
! TTGATGGACCCAGTTCTCTT+CGG + chr7_1:23185190-23185209 Msa1014420:intron 45.0%
ATTCAACAGTCGAGATCCCT+TGG - chr7_1:23185241-23185260 None:intergenic 45.0%
TCTCTGCAATCATGCAGTTG+TGG - chr7_1:23185347-23185366 None:intergenic 45.0%
AGAGCAACAGGAAGAAGGAA+TGG + chr7_1:23185451-23185470 Msa1014420:intron 45.0%
GAGCAGCAAAGTGTAGATTG+TGG + chr7_1:23185494-23185513 Msa1014420:CDS 45.0%
AGACAGAAGAGGAAGACTTC+TGG + chr7_1:23185645-23185664 Msa1014420:CDS 45.0%
GATCGATGGTGTTCAGATTC+AGG + chr7_1:23185710-23185729 Msa1014420:CDS 45.0%
! TTCCGGTTCTGACTCTGAAT+CGG - chr7_1:23185738-23185757 None:intergenic 45.0%
GCTGAAGAAGGGGATGTAAT+TGG + chr7_1:23185758-23185777 Msa1014420:CDS 45.0%
CCCAAGACACTCGAATTTCT+AGG - chr7_1:23186415-23186434 None:intergenic 45.0%
ATTCGAGTGTCTTGGGTTTC+AGG + chr7_1:23186419-23186438 Msa1014420:intron 45.0%
TTCGAGTGTCTTGGGTTTCA+GGG + chr7_1:23186420-23186439 Msa1014420:intron 45.0%
AATGCATGTTCAAGCCTGTG+TGG + chr7_1:23186446-23186465 Msa1014420:intron 45.0%
ATGCATGTTCAAGCCTGTGT+GGG + chr7_1:23186447-23186466 Msa1014420:intron 45.0%
GTCACGTGTGATTGTATGTG+AGG - chr7_1:23186586-23186605 None:intergenic 45.0%
AAAGGAGAGCCCAAAAGTGA+CGG - chr7_1:23187052-23187071 None:intergenic 45.0%
CTCAGAATTGTGACAGACCA+AGG - chr7_1:23187252-23187271 None:intergenic 45.0%
! TGTAGATGGTGATGCTGATG+TGG + chr7_1:23187351-23187370 Msa1014420:intron 45.0%
! TGATGCTGATGTGGATTGCA+AGG + chr7_1:23187360-23187379 Msa1014420:CDS 45.0%
! CTTTCTAGAAGCAAAGCTGC+TGG - chr7_1:23187556-23187575 None:intergenic 45.0%
TGTCCGTATCTGTGCTTCGT+AGG - chr7_1:23184840-23184859 None:intergenic 50.0%
CACAAACACTGGACACGACA+CGG + chr7_1:23184858-23184877 Msa1014420:intron 50.0%
TATGAAGCACGGACACTCCT+AGG - chr7_1:23184995-23185014 None:intergenic 50.0%
TAGCCCAACCGAAGAGAACT+GGG - chr7_1:23185201-23185220 None:intergenic 50.0%
TTAGCCCAACCGAAGAGAAC+TGG - chr7_1:23185202-23185221 None:intergenic 50.0%
!! ACGATGATGGAGGAGATCGA+TGG + chr7_1:23185696-23185715 Msa1014420:CDS 50.0%
GTCCGATTCAGAGTCAGAAC+CGG + chr7_1:23185733-23185752 Msa1014420:CDS 50.0%
TCAGAACCGGAAGCTGAAGA+AGG + chr7_1:23185746-23185765 Msa1014420:CDS 50.0%
CAGAACCGGAAGCTGAAGAA+GGG + chr7_1:23185747-23185766 Msa1014420:CDS 50.0%
AGAACCGGAAGCTGAAGAAG+GGG + chr7_1:23185748-23185767 Msa1014420:CDS 50.0%
ACATCCCCTTCTTCAGCTTC+CGG - chr7_1:23185755-23185774 None:intergenic 50.0%
TTAGGACAGAGGCAGGGATT+GGG - chr7_1:23186295-23186314 None:intergenic 50.0%
! TTTAGGACAGAGGCAGGGAT+TGG - chr7_1:23186296-23186315 None:intergenic 50.0%
! AGGAGTTTAGGACAGAGGCA+GGG - chr7_1:23186301-23186320 None:intergenic 50.0%
! TAGGAGTTTAGGACAGAGGC+AGG - chr7_1:23186302-23186321 None:intergenic 50.0%
AAAATGCTACCTAGTGCCCC+TGG + chr7_1:23186658-23186677 Msa1014420:intron 50.0%
! GAAGGTTATGGCGGAGACGA+CGG + chr7_1:23183640-23183659 Msa1014420:exon 55.0%
! AACTTGTTCGCGGTGCGGTT+TGG - chr7_1:23183963-23183982 None:intergenic 55.0%
! TGTCTGTGTCGTGTCGGTGT+CGG + chr7_1:23184956-23184975 Msa1014420:intron 55.0%
TCGGATACGCGGCTAATCCT+AGG + chr7_1:23184975-23184994 Msa1014420:intron 55.0%
TGGACCCAGTTCTCTTCGGT+TGG + chr7_1:23185194-23185213 Msa1014420:intron 55.0%
GGACCCAGTTCTCTTCGGTT+GGG + chr7_1:23185195-23185214 Msa1014420:intron 55.0%
AGATCCCTTGGCTGTGTGAG+CGG - chr7_1:23185229-23185248 None:intergenic 55.0%
GAACGCTGGGACAACGATGA+TGG + chr7_1:23185683-23185702 Msa1014420:CDS 55.0%
!! GGGATTGGGTTGGGAGAGAT+AGG - chr7_1:23186281-23186300 None:intergenic 55.0%
ACAGAGGCAGGGATTGGGTT+GGG - chr7_1:23186290-23186309 None:intergenic 55.0%
ATGCAAGCACAAGCCCACAC+AGG - chr7_1:23186463-23186482 None:intergenic 55.0%
! GTTCGCGGTGCGGTTTGGAT+CGG - chr7_1:23183958-23183977 None:intergenic 60.0%
!! TCGTGTCGGTGTCGGATACG+CGG + chr7_1:23184964-23184983 Msa1014420:intron 60.0%
AACACCCGCTCACACAGCCA+AGG + chr7_1:23185221-23185240 Msa1014420:intron 60.0%
ACACCCGCTCACACAGCCAA+GGG + chr7_1:23185222-23185241 Msa1014420:intron 60.0%
GATCCCTTGGCTGTGTGAGC+GGG - chr7_1:23185228-23185247 None:intergenic 60.0%
GACTTCTGGATGCCTCCTGC+TGG + chr7_1:23185659-23185678 Msa1014420:CDS 60.0%
TTGTCCCAGCGTTCTCCAGC+AGG - chr7_1:23185677-23185696 None:intergenic 60.0%
! CGCTGGGACAACGATGATGG+AGG + chr7_1:23185686-23185705 Msa1014420:CDS 60.0%
GACAGAGGCAGGGATTGGGT+TGG - chr7_1:23186291-23186310 None:intergenic 60.0%
!! ACTAGTGCTCCAGGGGCACT+AGG - chr7_1:23186670-23186689 None:intergenic 60.0%
! GGTTATGGCGGAGACGACGG+CGG + chr7_1:23183643-23183662 Msa1014420:exon 65.0%
TGCCTCCTGCTGGAGAACGC+TGG + chr7_1:23185669-23185688 Msa1014420:CDS 65.0%
GCCTCCTGCTGGAGAACGCT+GGG + chr7_1:23185670-23185689 Msa1014420:CDS 65.0%
TCCCAGCGTTCTCCAGCAGG+AGG - chr7_1:23185674-23185693 None:intergenic 65.0%
! TATGGCGGAGACGACGGCGG+CGG + chr7_1:23183646-23183665 Msa1014420:exon 70.0%
GGCGGTGGAGGTGGCGACGA+CGG + chr7_1:23183664-23183683 Msa1014420:CDS 75.0%
GGTGGAGGTGGCGACGACGG+AGG + chr7_1:23183667-23183686 Msa1014420:CDS 75.0%
! GGAGACGACGGCGGCGGTGG+AGG + chr7_1:23183652-23183671 Msa1014420:CDS 80.0%
! GACGACGGCGGCGGTGGAGG+TGG + chr7_1:23183655-23183674 Msa1014420:CDS 80.0%
! GGCGGAGACGACGGCGGCGG+TGG + chr7_1:23183649-23183668 Msa1014420:CDS 85.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 23183558 23188135 23183558 ID=Msa1014420;Name=Msa1014420
chr7_1 mRNA 23183558 23188135 23183558 ID=Msa1014420-mRNA-1;Parent=Msa1014420;Name=Msa1014420-mRNA-1;_AED=0.00;_eAED=0.00;_QI=89|1|0.8|1|1|1|5|530|273
chr7_1 exon 23183558 23183909 23183558 ID=Msa1014420-mRNA-1:exon:5371;Parent=Msa1014420-mRNA-1
chr7_1 exon 23184009 23184106 23184009 ID=Msa1014420-mRNA-1:exon:5372;Parent=Msa1014420-mRNA-1
chr7_1 exon 23185453 23185779 23185453 ID=Msa1014420-mRNA-1:exon:5373;Parent=Msa1014420-mRNA-1
chr7_1 exon 23187356 23187404 23187356 ID=Msa1014420-mRNA-1:exon:5374;Parent=Msa1014420-mRNA-1
chr7_1 exon 23187521 23188135 23187521 ID=Msa1014420-mRNA-1:exon:5375;Parent=Msa1014420-mRNA-1
chr7_1 five_prime_UTR 23183558 23183646 23183558 ID=Msa1014420-mRNA-1:five_prime_utr;Parent=Msa1014420-mRNA-1
chr7_1 CDS 23183647 23183909 23183647 ID=Msa1014420-mRNA-1:cds;Parent=Msa1014420-mRNA-1
chr7_1 CDS 23184009 23184106 23184009 ID=Msa1014420-mRNA-1:cds;Parent=Msa1014420-mRNA-1
chr7_1 CDS 23185453 23185779 23185453 ID=Msa1014420-mRNA-1:cds;Parent=Msa1014420-mRNA-1
chr7_1 CDS 23187356 23187404 23187356 ID=Msa1014420-mRNA-1:cds;Parent=Msa1014420-mRNA-1
chr7_1 CDS 23187521 23187605 23187521 ID=Msa1014420-mRNA-1:cds;Parent=Msa1014420-mRNA-1
chr7_1 three_prime_UTR 23187606 23188135 23187606 ID=Msa1014420-mRNA-1:three_prime_utr;Parent=Msa1014420-mRNA-1
Gene Sequence

>Msa1014420

ATGGCGGAGACGACGGCGGCGGTGGAGGTGGCGACGACGGAGGAGAATGTTAAGCAGAAAGAAGGAAGCAACCTATTAGGTTCACCGAAATTCAAGGAAATCGGAAACGGTCGATTCAAATGCGTAGAGACAGGTCACGAAGTACTCTCCAAAGACATACCCTTTTACTCCAACAGTAAAAAATGTCGTTTAGGTCTCATCGATTTCGCTTTGGCTAATAATAAATCTCCACTTAATATGTTTAATCAAGATCCTCTTTGCCGTTCGAAGTTGATATGTAAGTTGACTGGTCATAAGGTTAATAAGTCAGAGGAACATATTTGGAAGCATATGACTGGGAAAAGATTTCTCAATAAATTAGAGCAACAGGAAGAAGGAATGGAAAATGGCGAGAGCTTGCAAGAGCAGCAAAGTGTAGATTGTGGAACGAAAGCTGAAATGAAGAAGAAGAATAAGCAAAAGAACAAGAAGAAAAAGAAGACAAAGAAGAAGAAAGATAAGAGAGTTGAAGAACTTATTTCTGAAGTTAGGAAGTCTTCTAATGAAGAAAGTGAGACAGAAGAGGAAGACTTCTGGATGCCTCCTGCTGGAGAACGCTGGGACAACGATGATGGAGGAGATCGATGGTGTTCAGATTCAGGGTCCGATTCAGAGTCAGAACCGGAAGCTGAAGAAGGGGATGTAATTGATGGTGATGCTGATGTGGATTGCAAGGAGTCAGAAGAGTTATCCTCAAGCAGAACAAAAAGACTGTCAATAGAAGTTGGACCCAGCAGCTTTGCTTCTAGAAAGAAGAAAAGTAAGAAGAACGACGAGACTTGA

Protein sequence

>Msa1014420

MAETTAAVEVATTEENVKQKEGSNLLGSPKFKEIGNGRFKCVETGHEVLSKDIPFYSNSKKCRLGLIDFALANNKSPLNMFNQDPLCRSKLICKLTGHKVNKSEEHIWKHMTGKRFLNKLEQQEEGMENGESLQEQQSVDCGTKAEMKKKNKQKNKKKKKTKKKKDKRVEELISEVRKSSNEESETEEEDFWMPPAGERWDNDDGGDRWCSDSGSDSESEPEAEEGDVIDGDADVDCKESEELSSSRTKRLSIEVGPSSFASRKKKSKKNDET*