AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0086180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0086180 MtrunA17_Chr1g0201701 94.565 184 10 0 12 195 1 184 4.26e-128 358
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0086180 AT5G09270.1 55.789 95 37 2 101 195 19 108 1.88e-30 108
Msa0086180 AT5G09270.2 55.789 95 37 2 101 195 19 108 1.88e-30 108

Find 53 sgRNAs with CRISPR-Local

Find 392 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTCCTGCTGCAGGCTTTA+TGG 0.092653 1_2:-66793453 Msa0086180:CDS
CTCTTCTGCTACGGGCTTTA+TGG 0.095185 1_2:-66793624 Msa0086180:CDS
TATATGGCGGATTTGGTCTT+TGG 0.234560 1_2:-66793352 Msa0086180:CDS
ATTCTTGTATATGGCGGATT+TGG 0.303440 1_2:-66793359 Msa0086180:CDS
ATAGATATAGAAAGCTTCTT+AGG 0.309898 1_2:-66793322 Msa0086180:CDS
GGTTCCTATATTCTTGTATA+TGG 0.337081 1_2:-66793368 Msa0086180:CDS
TTCTGCCAAAGTGGTTGAAA+AGG 0.353945 1_2:-66793213 Msa0086180:CDS
CTTGGTCCTCACCAGTTTCC+AGG 0.356142 1_2:+66793486 None:intergenic
TGCAGGCTTTATGGATTCAT+TGG 0.369416 1_2:-66793444 Msa0086180:CDS
CAGAAACTTATCCTTATGTA+TGG 0.372733 1_2:-66793391 Msa0086180:CDS
GGAACACTTAGCCAAGAAAA+TGG 0.372873 1_2:-66793732 Msa0086180:CDS
TGGATAAGTGCTTCAGAACT+TGG 0.383586 1_2:+66793677 None:intergenic
TTATGGATTCATTGGAAAAT+CGG 0.384322 1_2:-66793436 Msa0086180:CDS
TGATTTGCCATGTCCTTGGC+TGG 0.408407 1_2:+66793554 None:intergenic
AAGAAGCTTTCTATATCTAT+AGG 0.413891 1_2:+66793325 None:intergenic
GTCGGTGCCCCTCCTGCTGC+AGG 0.419080 1_2:-66793461 Msa0086180:CDS
CAGGAGGGGCACCGACTACT+TGG 0.421600 1_2:+66793468 None:intergenic
AAGTTCTGCAGCACCTATCC+TGG 0.422828 1_2:-66793504 Msa0086180:CDS
AGGATAGGTGCTGCAGAACT+TGG 0.446859 1_2:+66793506 None:intergenic
AGTCGGTGGCTCTTCTGCTA+CGG 0.454743 1_2:-66793633 Msa0086180:CDS
GCAGCACCTATCCTGGAAAC+TGG 0.465240 1_2:-66793497 Msa0086180:CDS
GAAGCACTTATCCAGAAAAC+TGG 0.468163 1_2:-66793668 Msa0086180:CDS
GTCGGTGGCTCTTCTGCTAC+GGG 0.474768 1_2:-66793632 Msa0086180:CDS
ACAACGTGAGATGGTTGAAA+AGG 0.483137 1_2:-66793267 Msa0086180:CDS
TCCGCCATATACAAGAATAT+AGG 0.486205 1_2:+66793364 None:intergenic
TGGTTGATTTGCCATGTCCT+TGG 0.486730 1_2:+66793550 None:intergenic
AGCTTCTTAGGACAGAGGAC+AGG 0.494425 1_2:-66793310 Msa0086180:CDS
AGAAACTTATCCTTATGTAT+GGG 0.501079 1_2:-66793390 Msa0086180:CDS
TCTGCCAAAGTGGTTGAAAA+GGG 0.502981 1_2:-66793212 Msa0086180:CDS
ATATAGGAACCCCATACATA+AGG 0.508413 1_2:+66793380 None:intergenic
TCCTATATTCTTGTATATGG+CGG 0.519420 1_2:-66793365 Msa0086180:CDS
TTCTAGTAATTCTGCCAAAG+TGG 0.522258 1_2:-66793222 Msa0086180:CDS
ATGTTGCAATGTAGGCTACT+TGG 0.523428 1_2:+66793166 None:intergenic
CATAAAGCCTGCAGCAGGAG+GGG 0.525453 1_2:+66793454 None:intergenic
TCCTCACCAGTTTCCAGGAT+AGG 0.526596 1_2:+66793491 None:intergenic
TCCATAAAGCCTGCAGCAGG+AGG 0.530529 1_2:+66793452 None:intergenic
TTAGGACAGAGGACAGGGTA+CGG 0.537011 1_2:-66793304 Msa0086180:CDS
GAATCCATAAAGCCTGCAGC+AGG 0.543830 1_2:+66793449 None:intergenic
TAGGACAGAGGACAGGGTAC+GGG 0.558112 1_2:-66793303 Msa0086180:CDS
GGAAGGAATCTCAGAAGATG+TGG 0.565631 1_2:+66793187 None:intergenic
GAAACTTATCCTTATGTATG+GGG 0.570070 1_2:-66793389 Msa0086180:CDS
TCAAGCAAGACAACGTGAGA+TGG 0.594385 1_2:-66793276 Msa0086180:CDS
CCATAAAGCCTGCAGCAGGA+GGG 0.618716 1_2:+66793453 None:intergenic
TAGCTGGAACACTCCAGCCA+AGG 0.621030 1_2:-66793567 Msa0086180:CDS
GAACACTCCAGCCAAGGACA+TGG 0.636957 1_2:-66793561 Msa0086180:CDS
GCTTCTTAGGACAGAGGACA+GGG 0.639564 1_2:-66793309 Msa0086180:CDS
ACCTATCCTGGAAACTGGTG+AGG 0.641675 1_2:-66793492 Msa0086180:CDS
TGCAATGTAGGCTACTTGGA+AGG 0.646398 1_2:+66793170 None:intergenic
ACTGGCGAGGATCAAGTAGT+CGG 0.654403 1_2:-66793650 Msa0086180:CDS
TAGAAAGCTTCTTAGGACAG+AGG 0.663471 1_2:-66793315 Msa0086180:CDS
ACTGGTGAGGACCAAGTAGT+CGG 0.664340 1_2:-66793479 Msa0086180:CDS
GGCGAGGATCAAGTAGTCGG+TGG 0.665719 1_2:-66793647 Msa0086180:CDS
ACTTATCCAGAAAACTGGCG+AGG 0.696112 1_2:-66793663 Msa0086180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTATTAATAAGCAAA+GGG + chr1_2:66793834-66793853 None:intergenic 10.0%
!!! TTTATTTTATTAATAAGCAA+AGG + chr1_2:66793835-66793854 None:intergenic 10.0%
!!! TTTTTATTATCAAATAGATT+AGG - chr1_2:66793960-66793979 Msa0086180:intron 10.0%
!!! ATGTCATTTATTTATTTATT+TGG + chr1_2:66794562-66794581 None:intergenic 10.0%
!!! AACATATATTTTTTTTTTTG+GGG + chr1_2:66795803-66795822 None:intergenic 10.0%
!! ATTTATCATAATTAATATCA+CGG + chr1_2:66796041-66796060 None:intergenic 10.0%
!!! AAATTTTAGTATTTCATTAT+GGG - chr1_2:66796575-66796594 Msa0086180:intron 10.0%
!! ATGAAATAAATTAAATTAAG+GGG + chr1_2:66796834-66796853 None:intergenic 10.0%
!! TATAAATAAAATTATCAAAG+AGG + chr1_2:66797709-66797728 None:intergenic 10.0%
!!! AAATTTTTATCCAAAATCTT+AGG - chr1_2:66793216-66793235 Msa0086180:CDS 15.0%
!! ATTTATTAATTATTAACCAC+CGG + chr1_2:66793381-66793400 None:intergenic 15.0%
!!! TTTTTTTATAGAGAAAATTG+TGG + chr1_2:66793450-66793469 None:intergenic 15.0%
!!! TTTTTTTTGTTACATTTGAT+AGG - chr1_2:66793613-66793632 Msa0086180:CDS 15.0%
!!! ATAGGACAATTTTTTTTTTT+TGG - chr1_2:66793631-66793650 Msa0086180:CDS 15.0%
!! AAAAAAAAAAAACAAGAGTT+TGG - chr1_2:66793863-66793882 Msa0086180:intron 15.0%
!! AAAAAAAAAAACAAGAGTTT+GGG - chr1_2:66793864-66793883 Msa0086180:intron 15.0%
!! AATATTCTTAATTGGATATT+GGG + chr1_2:66794334-66794353 None:intergenic 15.0%
!! TCAAACAAATAAAATTTGAT+TGG + chr1_2:66794397-66794416 None:intergenic 15.0%
!!! AATTTAATTTTTTTTCTGGT+TGG + chr1_2:66795009-66795028 None:intergenic 15.0%
!!! TTGTTTTAATTAGAGTTTTA+GGG + chr1_2:66795051-66795070 None:intergenic 15.0%
!! TAAAACGAAAAAACAAAAAA+CGG - chr1_2:66795157-66795176 Msa0086180:intron 15.0%
!! TTGATATTTCACATAATTTA+GGG - chr1_2:66795609-66795628 Msa0086180:intron 15.0%
!!! ACATATATTTTTTTTTTTGG+GGG + chr1_2:66795802-66795821 None:intergenic 15.0%
!!! TTATACTATGAACAAATTTT+TGG - chr1_2:66796199-66796218 Msa0086180:intron 15.0%
!!! TATACTATGAACAAATTTTT+GGG - chr1_2:66796200-66796219 Msa0086180:intron 15.0%
!! TAATTAGTTAGAATTGAAAT+TGG - chr1_2:66796392-66796411 Msa0086180:intron 15.0%
!! ATTTGTATCAAATTATAAGT+CGG + chr1_2:66796559-66796578 None:intergenic 15.0%
!!! CAAATTTTAGTATTTCATTA+TGG - chr1_2:66796574-66796593 Msa0086180:intron 15.0%
!! TGAAATAAATTAAATTAAGG+GGG + chr1_2:66796833-66796852 None:intergenic 15.0%
!!! ATTTTTTAAGAGTAATACAA+TGG - chr1_2:66797483-66797502 Msa0086180:intron 15.0%
!!! TATAATATTTTAGTTAGTAC+TGG - chr1_2:66797725-66797744 Msa0086180:intron 15.0%
!!! TTCATTTTATTTTGACTATA+TGG + chr1_2:66798384-66798403 None:intergenic 15.0%
!! TAATTAAATGTATCATATGT+TGG - chr1_2:66798416-66798435 Msa0086180:intron 15.0%
!!! TCTCAAAATTTGAAGTTATT+TGG + chr1_2:66793505-66793524 None:intergenic 20.0%
!!! TTTTTTTGGTTACATTTGAT+AGG - chr1_2:66793645-66793664 Msa0086180:CDS 20.0%
!! ATAGGAATAATCTTATATCA+AGG - chr1_2:66793663-66793682 Msa0086180:CDS 20.0%
!! AGAATATTGTTTACTCTAAT+TGG - chr1_2:66793719-66793738 Msa0086180:CDS 20.0%
!! ATACATTTAATACAAGAATG+TGG + chr1_2:66793754-66793773 None:intergenic 20.0%
!! TTTGAACTAAGTTATTGTAT+TGG - chr1_2:66793773-66793792 Msa0086180:intron 20.0%
!!! TTTTATCAACTTGAGTATAA+TGG + chr1_2:66793809-66793828 None:intergenic 20.0%
!! GAATATTCTTAATTGGATAT+TGG + chr1_2:66794335-66794354 None:intergenic 20.0%
!! AACTTGAGAATATTCTTAAT+TGG + chr1_2:66794342-66794361 None:intergenic 20.0%
!! AATTTGATTGGACAAAATAA+AGG + chr1_2:66794385-66794404 None:intergenic 20.0%
!!! CAAATTTTATTTGTTTGAGT+TGG - chr1_2:66794399-66794418 Msa0086180:intron 20.0%
!! CAAAAAAAAATCAAATTGGT+TGG + chr1_2:66794459-66794478 None:intergenic 20.0%
!! TGCTCAAAAAAAAATCAAAT+TGG + chr1_2:66794463-66794482 None:intergenic 20.0%
!! ATAGATAGAGAAATAATTCA+GGG + chr1_2:66794786-66794805 None:intergenic 20.0%
!! ATATCTGATTAAACAATTCA+GGG + chr1_2:66794851-66794870 None:intergenic 20.0%
!!! GTTGTTTTAATTAGAGTTTT+AGG + chr1_2:66795052-66795071 None:intergenic 20.0%
!! GTTGATATTTCACATAATTT+AGG - chr1_2:66795608-66795627 Msa0086180:intron 20.0%
!!! TAGAATTGAAATTGGAATTT+TGG - chr1_2:66796313-66796332 Msa0086180:intron 20.0%
!!! TTAGTTTTTAGTTACTGAAT+TGG - chr1_2:66796340-66796359 Msa0086180:intron 20.0%
!! TAGAATTGAAATTGGAATTT+CGG - chr1_2:66796313-66796332 Msa0086180:intron 20.0%
!! GGAAAGTAATTATAGTTATT+TGG + chr1_2:66796638-66796657 None:intergenic 20.0%
!! AAATAAATTAAATTAAGGGG+GGG + chr1_2:66796831-66796850 None:intergenic 20.0%
!! GAAATAAATTAAATTAAGGG+GGG + chr1_2:66796832-66796851 None:intergenic 20.0%
!!! AATACAAGTTTTCAATTTGT+AGG + chr1_2:66797052-66797071 None:intergenic 20.0%
!! GTGAAAAATTAATTGATCTA+CGG - chr1_2:66797379-66797398 Msa0086180:intron 20.0%
!! ATATCCACTATACATTTATA+GGG + chr1_2:66798155-66798174 None:intergenic 20.0%
!! AATATCCACTATACATTTAT+AGG + chr1_2:66798156-66798175 None:intergenic 20.0%
!! GGCTTATAATAATATACATA+TGG - chr1_2:66798443-66798462 Msa0086180:intron 20.0%
!!! TGCAGTTTTTCTTTAATTAT+CGG - chr1_2:66798594-66798613 Msa0086180:intron 20.0%
!! TTATGGATTCATTGAAAAAT+CGG - chr1_2:66798747-66798766 Msa0086180:intron 20.0%
! TCTTTGTTCATTGATAAAGA+AGG - chr1_2:66793686-66793705 Msa0086180:CDS 25.0%
! ATATTGTTTACTCTAATTGG+TGG - chr1_2:66793722-66793741 Msa0086180:CDS 25.0%
!!! AAATCTGTTTTTGAGATGAT+TGG - chr1_2:66793931-66793950 Msa0086180:intron 25.0%
! ATCAAATAGATTAGGTTTAG+TGG - chr1_2:66793968-66793987 Msa0086180:intron 25.0%
!! CATCCATCTATTAAGATTTT+AGG - chr1_2:66794124-66794143 Msa0086180:intron 25.0%
! TAGCCTAAAATCTTAATAGA+TGG + chr1_2:66794130-66794149 None:intergenic 25.0%
! TTCATTAGAACTTTACTAGA+GGG + chr1_2:66794702-66794721 None:intergenic 25.0%
! TTTCATTAGAACTTTACTAG+AGG + chr1_2:66794703-66794722 None:intergenic 25.0%
!! AGTAAAGTTCTAATGAAAAG+AGG - chr1_2:66794705-66794724 Msa0086180:intron 25.0%
! GATAGATAGAGAAATAATTC+AGG + chr1_2:66794787-66794806 None:intergenic 25.0%
! GATATCTGATTAAACAATTC+AGG + chr1_2:66794852-66794871 None:intergenic 25.0%
! ATTACATATGCAAAAGTCAT+AGG - chr1_2:66794943-66794962 Msa0086180:intron 25.0%
!!! AATTAGAGTTTTAGGGTTTT+GGG + chr1_2:66795044-66795063 None:intergenic 25.0%
!!! TAATTAGAGTTTTAGGGTTT+TGG + chr1_2:66795045-66795064 None:intergenic 25.0%
! ACAAAAAACGGACAAAAAAA+TGG - chr1_2:66795169-66795188 Msa0086180:intron 25.0%
! ACAAAAACTTGATAAACTAG+AGG - chr1_2:66795203-66795222 Msa0086180:intron 25.0%
! TAAAACTGAAAAGTGAAAAC+TGG - chr1_2:66795425-66795444 Msa0086180:intron 25.0%
! TATTTCACATAATTTAGGGA+CGG - chr1_2:66795613-66795632 Msa0086180:intron 25.0%
! AAATTCATCCATGAATTTCA+CGG + chr1_2:66795650-66795669 None:intergenic 25.0%
! AAATTCATGGATGAATTTGA+TGG - chr1_2:66795652-66795671 Msa0086180:intron 25.0%
!! TTTTGTTCTTTTAGCGTTTA+GGG + chr1_2:66795829-66795848 None:intergenic 25.0%
!!! AATTGCTTGTTTTAGGTTTA+GGG - chr1_2:66795973-66795992 Msa0086180:intron 25.0%
!!! AGGTTTAGGGTTTTAAAATT+CGG - chr1_2:66795986-66796005 Msa0086180:intron 25.0%
! CACTAGTAAATGTTCAAATT+TGG + chr1_2:66796067-66796086 None:intergenic 25.0%
!!! ATGAACAAATTTTTGGGAAT+TGG - chr1_2:66796206-66796225 Msa0086180:intron 25.0%
!!! TGAACAAATTTTTGGGAATT+GGG - chr1_2:66796207-66796226 Msa0086180:intron 25.0%
!!! AAATTTTGTTTGTCATGAAC+AGG - chr1_2:66796235-66796254 Msa0086180:intron 25.0%
!!! GTTATGAACACTTTTTTTGT+TGG - chr1_2:66796289-66796308 Msa0086180:intron 25.0%
!! TTGTTGGTTAGAATTGAAAT+TGG - chr1_2:66796305-66796324 Msa0086180:intron 25.0%
! ATGCATTAACTACATAGAAT+TGG - chr1_2:66796364-66796383 Msa0086180:intron 25.0%
! TTAGTATTTCATTATGGGAA+TGG - chr1_2:66796580-66796599 Msa0086180:intron 25.0%
! TAGTATTTCATTATGGGAAT+GGG - chr1_2:66796581-66796600 Msa0086180:intron 25.0%
! TCAATTTGTAGGTTTAAGTA+GGG + chr1_2:66797041-66797060 None:intergenic 25.0%
! TTCAATTTGTAGGTTTAAGT+AGG + chr1_2:66797042-66797061 None:intergenic 25.0%
!!! TTTTGTTGGTTAAATGTGTT+TGG - chr1_2:66797174-66797193 Msa0086180:intron 25.0%
!! TTTGTTGGTTAAATGTGTTT+GGG - chr1_2:66797175-66797194 Msa0086180:intron 25.0%
!!! GGATTCAGTGTTATTTAAAT+TGG - chr1_2:66797357-66797376 Msa0086180:intron 25.0%
! AAATTAATTGATCTACGGTT+TGG - chr1_2:66797384-66797403 Msa0086180:intron 25.0%
!!! TTTGGTGCTTAAAAATTGAT+CGG - chr1_2:66797402-66797421 Msa0086180:intron 25.0%
!! AAATTGATGCATTTTGTAAG+AGG - chr1_2:66797518-66797537 Msa0086180:intron 25.0%
! TATACAATTTGCATCTTTGT+TGG + chr1_2:66797551-66797570 None:intergenic 25.0%
!!! TTTTTCGAATATTGCAAGTT+TGG + chr1_2:66797633-66797652 None:intergenic 25.0%
! AATATTCGAAAAAGTCACAA+TGG - chr1_2:66797640-66797659 Msa0086180:intron 25.0%
!!! ATTATCAAAGAGGCATTTTT+CGG + chr1_2:66797699-66797718 None:intergenic 25.0%
! TTAGTACTATGTAAACATTC+AGG - chr1_2:66797797-66797816 Msa0086180:intron 25.0%
!!! ATATTTTGTCTGTGTTTTGA+TGG - chr1_2:66798027-66798046 Msa0086180:intron 25.0%
!!! AGTTGTTTCTATAATATGCT+TGG - chr1_2:66798070-66798089 Msa0086180:intron 25.0%
!!! GTTGTTTCTATAATATGCTT+GGG - chr1_2:66798071-66798090 Msa0086180:intron 25.0%
!!! CTTTAAAGTTTATTAGCATG+TGG - chr1_2:66798116-66798135 Msa0086180:intron 25.0%
! CATCAAGAAAATGGATAAAT+TGG + chr1_2:66798252-66798271 None:intergenic 25.0%
!! CAATTTATCCATTTTCTTGA+TGG - chr1_2:66798250-66798269 Msa0086180:intron 25.0%
!!! AGAAGTTTGTTATATGATGA+GGG + chr1_2:66798327-66798346 None:intergenic 25.0%
!!! TAGAAGTTTGTTATATGATG+AGG + chr1_2:66798328-66798347 None:intergenic 25.0%
!!! TTATTTTGACTATATGGTGA+AGG + chr1_2:66798378-66798397 None:intergenic 25.0%
! ATCAAAAAATCATAGATAGC+TGG - chr1_2:66798771-66798790 Msa0086180:intron 25.0%
! TTATGGATTCATTGGAAAAT+CGG - chr1_2:66798918-66798937 Msa0086180:intron 25.0%
! AGAAACTTATCCTTATGTAT+GGG - chr1_2:66798964-66798983 Msa0086180:intron 25.0%
! AAGAAGCTTTCTATATCTAT+AGG + chr1_2:66799032-66799051 None:intergenic 25.0%
! ATAGATATAGAAAGCTTCTT+AGG - chr1_2:66799032-66799051 Msa0086180:intron 25.0%
ATGTAACACATATACCTCTT+AGG - chr1_2:66793250-66793269 Msa0086180:CDS 30.0%
ACTATGAAAGAACATACACT+TGG + chr1_2:66793318-66793337 None:intergenic 30.0%
ATATTGCAGAAGTGATTGAT+AGG - chr1_2:66793581-66793600 Msa0086180:CDS 30.0%
GAAATCTATGAGAAAAAGTG+TGG - chr1_2:66794083-66794102 Msa0086180:intron 30.0%
AAAACGAATGCAATCAACAA+GGG + chr1_2:66794259-66794278 None:intergenic 30.0%
AAAAACGAATGCAATCAACA+AGG + chr1_2:66794260-66794279 None:intergenic 30.0%
AACATACTTCTATGTTCAGT+GGG - chr1_2:66794291-66794310 Msa0086180:intron 30.0%
!!! TCTCAAGTTGAGTTAAGTTT+TGG - chr1_2:66794353-66794372 Msa0086180:intron 30.0%
TAATTCAGGGACTAATTTGA+TGG + chr1_2:66794773-66794792 None:intergenic 30.0%
!!! CAATTCAGGGACTTATTTTA+TGG + chr1_2:66794838-66794857 None:intergenic 30.0%
AACTTGATAAACTAGAGGAA+AGG - chr1_2:66795208-66795227 Msa0086180:intron 30.0%
! TTTTCCACTATCCATCAAAT+TGG - chr1_2:66795451-66795470 Msa0086180:intron 30.0%
TTGTCAAACATCCATCAAAA+AGG + chr1_2:66795575-66795594 None:intergenic 30.0%
!! GTTTTGTTCTTTTAGCGTTT+AGG + chr1_2:66795830-66795849 None:intergenic 30.0%
CTAAACCTAAAACAAGCAAT+TGG + chr1_2:66795974-66795993 None:intergenic 30.0%
!!! CAATTGCTTGTTTTAGGTTT+AGG - chr1_2:66795972-66795991 Msa0086180:intron 30.0%
!!! AGGGTTTTAAAATTCGGAAT+TGG - chr1_2:66795992-66796011 Msa0086180:intron 30.0%
TCGATTAGATGAATTATGCT+TGG - chr1_2:66796108-66796127 Msa0086180:intron 30.0%
TAGATGAATTATGCTTGGTT+TGG - chr1_2:66796113-66796132 Msa0086180:intron 30.0%
!! TTATGCTTGGTTTGGTTAAT+TGG - chr1_2:66796121-66796140 Msa0086180:intron 30.0%
!!! TTAATTGGTTTTGTGCATTG+TGG - chr1_2:66796136-66796155 Msa0086180:intron 30.0%
ACTTGAGAAACCTTAAAACA+GGG + chr1_2:66796885-66796904 None:intergenic 30.0%
GTATGAAAATGAAGAGTGAA+GGG + chr1_2:66796981-66797000 None:intergenic 30.0%
AGTATGAAAATGAAGAGTGA+AGG + chr1_2:66796982-66797001 None:intergenic 30.0%
! CTCTTCATTTTCATACTTTC+AGG - chr1_2:66796985-66797004 Msa0086180:intron 30.0%
ACTAAAAGACACCAAATAGT+CGG + chr1_2:66797216-66797235 None:intergenic 30.0%
!!! ACTATTTGGTGTCTTTTAGT+TGG - chr1_2:66797216-66797235 Msa0086180:intron 30.0%
!!! TGAGGTGTTATTTTTTTCTG+CGG - chr1_2:66797281-66797300 Msa0086180:intron 30.0%
!!! TTATCAAAGAGGCATTTTTC+GGG + chr1_2:66797698-66797717 None:intergenic 30.0%
ATAGTACTAACAGAGACATT+GGG + chr1_2:66797787-66797806 None:intergenic 30.0%
! AGCAACAGAATTGCAATTTT+TGG + chr1_2:66797867-66797886 None:intergenic 30.0%
!! TGCTTAGTTTTCTTTTTGCT+TGG - chr1_2:66797883-66797902 Msa0086180:intron 30.0%
!! TTAGTTTTCTTTTTGCTTGG+TGG - chr1_2:66797886-66797905 Msa0086180:intron 30.0%
! TAGTTTTCTTTTTGCTTGGT+GGG - chr1_2:66797887-66797906 Msa0086180:intron 30.0%
TGAACCCTATAAATGTATAG+TGG - chr1_2:66798148-66798167 Msa0086180:intron 30.0%
TCAATGAACCATCAAGAAAA+TGG + chr1_2:66798261-66798280 None:intergenic 30.0%
!! TTTTCTTGATGGTTCATTGA+TGG - chr1_2:66798261-66798280 Msa0086180:intron 30.0%
! TTTCTTGATGGTTCATTGAT+GGG - chr1_2:66798262-66798281 Msa0086180:intron 30.0%
AAATCAAGTATCACGTTGAT+AGG - chr1_2:66798294-66798313 Msa0086180:intron 30.0%
AATCAAGTATCACGTTGATA+GGG - chr1_2:66798295-66798314 Msa0086180:intron 30.0%
AATGTATCATATGTTGGACT+TGG - chr1_2:66798422-66798441 Msa0086180:intron 30.0%
CTTTGATGCTGTTGTATATA+AGG - chr1_2:66798510-66798529 Msa0086180:intron 30.0%
TTTCTTTAATTATCGGTAGC+TGG - chr1_2:66798601-66798620 Msa0086180:intron 30.0%
!!! GCTTGTTGCTTTTCATTATT+TGG + chr1_2:66798827-66798846 None:intergenic 30.0%
CAGAAACTTATCCTTATGTA+TGG - chr1_2:66798963-66798982 Msa0086180:intron 30.0%
GAAACTTATCCTTATGTATG+GGG - chr1_2:66798965-66798984 Msa0086180:intron 30.0%
GGTTCCTATATTCTTGTATA+TGG - chr1_2:66798986-66799005 Msa0086180:intron 30.0%
TCCTATATTCTTGTATATGG+CGG - chr1_2:66798989-66799008 Msa0086180:intron 30.0%
! ATGTGACACACCTAAGATTT+TGG + chr1_2:66793229-66793248 None:intergenic 35.0%
ACCTCTTAGGATATACAAGA+CGG - chr1_2:66793263-66793282 Msa0086180:CDS 35.0%
ATGTTCTTTCATAGTTGACG+TGG - chr1_2:66793323-66793342 Msa0086180:CDS 35.0%
TGTTCTTTCATAGTTGACGT+GGG - chr1_2:66793324-66793343 Msa0086180:CDS 35.0%
ATTCGCCACATTCACATTTA+TGG + chr1_2:66793563-66793582 None:intergenic 35.0%
GAAGTTAAACTATTGCAGCA+TGG - chr1_2:66793993-66794012 Msa0086180:intron 35.0%
ATCTTATTCAAGACACCCAT+AGG + chr1_2:66794048-66794067 None:intergenic 35.0%
CAACATACTTCTATGTTCAG+TGG - chr1_2:66794290-66794309 Msa0086180:intron 35.0%
!! CAACTCAATTTGATGATGAG+CGG - chr1_2:66794484-66794503 Msa0086180:intron 35.0%
TCAATTGAGTTAAGCGACAA+TGG + chr1_2:66794608-66794627 None:intergenic 35.0%
GACAATGCATAAAATCTGCA+AGG - chr1_2:66794632-66794651 Msa0086180:intron 35.0%
AAAGAGGTTGAAGATGATTG+AGG - chr1_2:66794721-66794740 Msa0086180:intron 35.0%
CAGTTTCAATTTGTGTGTTC+TGG + chr1_2:66794919-66794938 None:intergenic 35.0%
!! AGATGATGATGATTTTGGAG+AGG - chr1_2:66795285-66795304 Msa0086180:intron 35.0%
!! ATGGAGAAAGTTTTAGCAGA+AGG - chr1_2:66795313-66795332 Msa0086180:intron 35.0%
! ATGTTTCTGAGAGAAATGTG+AGG - chr1_2:66795358-66795377 Msa0086180:intron 35.0%
GTATTCAAGGACCAATTTGA+TGG + chr1_2:66795465-66795484 None:intergenic 35.0%
GTATTGTACATGTGGCAAAA+AGG + chr1_2:66795495-66795514 None:intergenic 35.0%
! ACATAATTTAGGGACGGATT+TGG - chr1_2:66795619-66795638 Msa0086180:intron 35.0%
TTCAATGGTTTAGATGTCGA+CGG + chr1_2:66795680-66795699 None:intergenic 35.0%
GACATCTAAACCATTGAAAG+AGG - chr1_2:66795682-66795701 Msa0086180:intron 35.0%
ACGTGGCAAATAATATGACT+TGG - chr1_2:66795707-66795726 Msa0086180:intron 35.0%
! TGGCAAATAATATGACTTGG+TGG - chr1_2:66795710-66795729 Msa0086180:intron 35.0%
!! GGCAAATAATATGACTTGGT+GGG - chr1_2:66795711-66795730 Msa0086180:intron 35.0%
ACGCTAAAAGAACAAAACTG+AGG - chr1_2:66795832-66795851 Msa0086180:intron 35.0%
!! ACTCTCCAATTGCTTGTTTT+AGG - chr1_2:66795966-66795985 Msa0086180:intron 35.0%
CTAGACATTTAGTCTATGTG+TGG + chr1_2:66796450-66796469 None:intergenic 35.0%
!! AAGTCTATTTTGGGTGGAAT+TGG - chr1_2:66796482-66796501 Msa0086180:intron 35.0%
TTTCATTATGGGAATGGGAA+TGG - chr1_2:66796586-66796605 Msa0086180:intron 35.0%
TTCATTATGGGAATGGGAAT+GGG - chr1_2:66796587-66796606 Msa0086180:intron 35.0%
ATTACATCAGCCATTGTTCT+CGG - chr1_2:66796726-66796745 Msa0086180:intron 35.0%
! ATGTGTTATTCCGAGAACAA+TGG + chr1_2:66796739-66796758 None:intergenic 35.0%
CTGAATGGAGAAAGAGAATA+GGG + chr1_2:66796765-66796784 None:intergenic 35.0%
CTATTCTCTTTCTCCATTCA+GGG - chr1_2:66796764-66796783 Msa0086180:intron 35.0%
! ACACAAATACCCCTGTTTTA+AGG - chr1_2:66796872-66796891 Msa0086180:intron 35.0%
CTTGAGAAACCTTAAAACAG+GGG + chr1_2:66796884-66796903 None:intergenic 35.0%
GACTTGAGAAACCTTAAAAC+AGG + chr1_2:66796886-66796905 None:intergenic 35.0%
ACAGACACTCTGTAAATGTA+GGG + chr1_2:66797122-66797141 None:intergenic 35.0%
TACAGACACTCTGTAAATGT+AGG + chr1_2:66797123-66797142 None:intergenic 35.0%
! TACATTTACAGAGTGTCTGT+AGG - chr1_2:66797122-66797141 Msa0086180:intron 35.0%
! ACATTTACAGAGTGTCTGTA+GGG - chr1_2:66797123-66797142 Msa0086180:intron 35.0%
TAGGGTTTATAAGTGGTTTG+CGG - chr1_2:66797141-66797160 Msa0086180:intron 35.0%
!! TTATAAGTGGTTTGCGGTTT+TGG - chr1_2:66797147-66797166 Msa0086180:intron 35.0%
AAATAGTCGGACACTTAGTT+AGG + chr1_2:66797203-66797222 None:intergenic 35.0%
TAACTAAGTGTCCGACTATT+TGG - chr1_2:66797202-66797221 Msa0086180:intron 35.0%
!!! AGTTGGCTGAATGTGTTTTT+TGG - chr1_2:66797233-66797252 Msa0086180:intron 35.0%
!!! TGTGTTTTTTGGTCAGTATC+AGG - chr1_2:66797244-66797263 Msa0086180:intron 35.0%
!!! GAGGTGTTATTTTTTTCTGC+GGG - chr1_2:66797282-66797301 Msa0086180:intron 35.0%
!!! AGGTGTTATTTTTTTCTGCG+GGG - chr1_2:66797283-66797302 Msa0086180:intron 35.0%
GAACTCAATGTTTACTGTTG+TGG - chr1_2:66797336-66797355 Msa0086180:intron 35.0%
!! CTTCAACATTGACTCTTGAA+AGG - chr1_2:66797572-66797591 Msa0086180:intron 35.0%
ACTCTTGAAAGGAATCCTTT+CGG - chr1_2:66797583-66797602 Msa0086180:intron 35.0%
!!! TATCAAAGAGGCATTTTTCG+GGG + chr1_2:66797697-66797716 None:intergenic 35.0%
CATAGTACTAACAGAGACAT+TGG + chr1_2:66797788-66797807 None:intergenic 35.0%
GCATTACAGATAATCTGCAA+TGG + chr1_2:66798184-66798203 None:intergenic 35.0%
ACAGTAAACAGTAAGTGAGA+AGG + chr1_2:66798227-66798246 None:intergenic 35.0%
! GGTAGAGTAAATTTTGTGCA+TGG + chr1_2:66798357-66798376 None:intergenic 35.0%
!!! TGGTTGATTTGCCATTTTCT+TGG + chr1_2:66798636-66798655 None:intergenic 35.0%
!!! GCTTGCTGCTTTTCATTATT+TGG + chr1_2:66798656-66798675 None:intergenic 35.0%
ATATAGGAACCCCATACATA+AGG + chr1_2:66798977-66798996 None:intergenic 35.0%
TCCGCCATATACAAGAATAT+AGG + chr1_2:66798993-66799012 None:intergenic 35.0%
!! ATTCTTGTATATGGCGGATT+TGG - chr1_2:66798995-66799014 Msa0086180:intron 35.0%
TTCTAGTAATTCTGCCAAAG+TGG - chr1_2:66799132-66799151 Msa0086180:intron 35.0%
TCCGTCTTGTATATCCTAAG+AGG + chr1_2:66793267-66793286 None:intergenic 40.0%
CAATTAAAACCAACGCACAC+CGG - chr1_2:66793359-66793378 Msa0086180:CDS 40.0%
CACAGCCATAAATGTGAATG+TGG - chr1_2:66793555-66793574 Msa0086180:CDS 40.0%
TCCATGACTTGATGTCCTAT+GGG - chr1_2:66794030-66794049 Msa0086180:intron 40.0%
GGATGAACTCCAACTTGTAT+CGG + chr1_2:66794109-66794128 None:intergenic 40.0%
! TGTCGCTTAACTCAATTGAC+AGG - chr1_2:66794609-66794628 Msa0086180:intron 40.0%
GTCGCTTAACTCAATTGACA+GGG - chr1_2:66794610-66794629 Msa0086180:intron 40.0%
GCATAAAATCTGCAAGGTTG+AGG - chr1_2:66794638-66794657 Msa0086180:intron 40.0%
CAAACATAGAATGACCTTCC+TGG + chr1_2:66794679-66794698 None:intergenic 40.0%
TTGTGTTCAGCTGTGGTTAA+AGG + chr1_2:66795239-66795258 None:intergenic 40.0%
! GAAGTTTTTGTGTTCAGCTG+TGG + chr1_2:66795246-66795265 None:intergenic 40.0%
!! CGCAGAGATGATGATGATTT+TGG - chr1_2:66795280-66795299 Msa0086180:intron 40.0%
!! TGATTTTGGAGAGGTGAGAA+TGG - chr1_2:66795294-66795313 Msa0086180:intron 40.0%
! TTCTGAGAGAAATGTGAGGA+AGG - chr1_2:66795362-66795381 Msa0086180:intron 40.0%
TCTGAGAGAAATGTGAGGAA+GGG - chr1_2:66795363-66795382 Msa0086180:intron 40.0%
! AAATGTGAGGAAGGGTGTAT+GGG - chr1_2:66795371-66795390 Msa0086180:intron 40.0%
! AAGGGTGTATGGGTAATACA+GGG - chr1_2:66795381-66795400 Msa0086180:intron 40.0%
! AGGACCAATTTGATGGATAG+TGG + chr1_2:66795458-66795477 None:intergenic 40.0%
CAAATTGGTCCTTGAATACG+TGG - chr1_2:66795466-66795485 Msa0086180:intron 40.0%
AAAAGGAAGCCACGTATTCA+AGG + chr1_2:66795478-66795497 None:intergenic 40.0%
GCTGTGTTGTATTGTACATG+TGG + chr1_2:66795503-66795522 None:intergenic 40.0%
TACAATACAACACAGCATGC+AGG - chr1_2:66795507-66795526 Msa0086180:intron 40.0%
ACAATACAACACAGCATGCA+GGG - chr1_2:66795508-66795527 Msa0086180:intron 40.0%
ACACAGTCTCATTCACTCTA+AGG - chr1_2:66795932-66795951 Msa0086180:intron 40.0%
CAAGCAATTGGAGAGTCAAT+TGG + chr1_2:66795962-66795981 None:intergenic 40.0%
CACCCAAAATAGACTTACAG+GGG + chr1_2:66796478-66796497 None:intergenic 40.0%
CCACCCAAAATAGACTTACA+GGG + chr1_2:66796479-66796498 None:intergenic 40.0%
TCCACCCAAAATAGACTTAC+AGG + chr1_2:66796480-66796499 None:intergenic 40.0%
TCACCTGAAATCATGAGTTG+AGG - chr1_2:66796511-66796530 Msa0086180:intron 40.0%
! CACCTGAAATCATGAGTTGA+GGG - chr1_2:66796512-66796531 Msa0086180:intron 40.0%
ATCCCTCAACTCATGATTTC+AGG + chr1_2:66796517-66796536 None:intergenic 40.0%
! ATGAGTTGAGGGATGAGTTA+CGG - chr1_2:66796523-66796542 Msa0086180:intron 40.0%
TGACTTATGCAGCAATTTCG+AGG + chr1_2:66796659-66796678 None:intergenic 40.0%
GCATAAGTCAAAGCTTCATC+TGG - chr1_2:66796669-66796688 Msa0086180:intron 40.0%
ATGTAATCCAGAGAACAAGG+TGG + chr1_2:66796713-66796732 None:intergenic 40.0%
CTGATGTAATCCAGAGAACA+AGG + chr1_2:66796716-66796735 None:intergenic 40.0%
CCTGAATGGAGAAAGAGAAT+AGG + chr1_2:66796766-66796785 None:intergenic 40.0%
CCTATTCTCTTTCTCCATTC+AGG - chr1_2:66796763-66796782 Msa0086180:intron 40.0%
GTGTCTGTAGGGTTTATAAG+TGG - chr1_2:66797134-66797153 Msa0086180:intron 40.0%
!! TTTTTGGTCAGTATCAGGTG+TGG - chr1_2:66797249-66797268 Msa0086180:intron 40.0%
ATTGATCGGTTAACAGTCAG+TGG - chr1_2:66797416-66797435 Msa0086180:intron 40.0%
TGAACTGTTTGATCACCGAA+AGG + chr1_2:66797601-66797620 None:intergenic 40.0%
ACTAAGAGCAAGGTCAAACT+TGG + chr1_2:66797764-66797783 None:intergenic 40.0%
TCAGAACAGGAAAACAGAGA+GGG + chr1_2:66797837-66797856 None:intergenic 40.0%
ATCAGAACAGGAAAACAGAG+AGG + chr1_2:66797838-66797857 None:intergenic 40.0%
! TCTGTTTTCCTGTTCTGATC+AGG - chr1_2:66797839-66797858 Msa0086180:intron 40.0%
! CTGTTTTCCTGTTCTGATCA+GGG - chr1_2:66797840-66797859 Msa0086180:intron 40.0%
GGAACACTTAGCCAAGAAAA+TGG - chr1_2:66798622-66798641 Msa0086180:intron 40.0%
TGGATAAGTGCTTCAGAACT+TGG + chr1_2:66798680-66798699 None:intergenic 40.0%
! GAAGCACTTATCCAGAAAAC+TGG - chr1_2:66798686-66798705 Msa0086180:intron 40.0%
! TGCAGGCTTTATGGATTCAT+TGG - chr1_2:66798910-66798929 Msa0086180:intron 40.0%
!! TATATGGCGGATTTGGTCTT+TGG - chr1_2:66799002-66799021 Msa0086180:intron 40.0%
TAGAAAGCTTCTTAGGACAG+AGG - chr1_2:66799039-66799058 Msa0086180:intron 40.0%
ACAACGTGAGATGGTTGAAA+AGG - chr1_2:66799087-66799106 Msa0086180:intron 40.0%
TTCTGCCAAAGTGGTTGAAA+AGG - chr1_2:66799141-66799160 Msa0086180:intron 40.0%
TCTGCCAAAGTGGTTGAAAA+GGG - chr1_2:66799142-66799161 Msa0086180:intron 40.0%
GTCCATGACTTGATGTCCTA+TGG - chr1_2:66794029-66794048 Msa0086180:intron 45.0%
ACCCATAGGACATCAAGTCA+TGG + chr1_2:66794034-66794053 None:intergenic 45.0%
AAAGTGTGGCCGATACAAGT+TGG - chr1_2:66794097-66794116 Msa0086180:intron 45.0%
ACATAGAATGACCTTCCTGG+TGG + chr1_2:66794676-66794695 None:intergenic 45.0%
TAGCAGAAGGAGAAGAGTCA+AGG - chr1_2:66795326-66795345 Msa0086180:intron 45.0%
! GAAATGTGAGGAAGGGTGTA+TGG - chr1_2:66795370-66795389 Msa0086180:intron 45.0%
! GAAGGGTGTATGGGTAATAC+AGG - chr1_2:66795380-66795399 Msa0086180:intron 45.0%
AGGGTGTATGGGTAATACAG+GGG - chr1_2:66795382-66795401 Msa0086180:intron 45.0%
CGACAAATCAGCATGGCTAA+CGG - chr1_2:66795531-66795550 Msa0086180:intron 45.0%
CATCCATGAATTTCACGGCT+CGG + chr1_2:66795645-66795664 None:intergenic 45.0%
AACCATTGAAAGAGGTGACG+TGG - chr1_2:66795690-66795709 Msa0086180:intron 45.0%
CCAAAATAGACTTACAGGGG+CGG + chr1_2:66796475-66796494 None:intergenic 45.0%
! CGCCCCTGTAAGTCTATTTT+GGG - chr1_2:66796473-66796492 Msa0086180:intron 45.0%
!! CCCTGTAAGTCTATTTTGGG+TGG - chr1_2:66796476-66796495 Msa0086180:intron 45.0%
AAAACTGCCACCTTGTTCTC+TGG - chr1_2:66796703-66796722 Msa0086180:intron 45.0%
CACACATGATGCTAGAGAGA+CGG + chr1_2:66796924-66796943 None:intergenic 45.0%
!!! GCGGTTTTGGCTCTTTTTGT+TGG - chr1_2:66797160-66797179 Msa0086180:intron 45.0%
AGTCAGTGGCTGTAACAGTT+TGG - chr1_2:66797430-66797449 Msa0086180:intron 45.0%
CGGTGATCAAACAGTTCAAC+TGG - chr1_2:66797603-66797622 Msa0086180:intron 45.0%
AGACATTGGGACTAAGAGCA+AGG + chr1_2:66797774-66797793 None:intergenic 45.0%
AGAACAGGAAAACAGAGAGG+GGG + chr1_2:66797835-66797854 None:intergenic 45.0%
CAGAACAGGAAAACAGAGAG+GGG + chr1_2:66797836-66797855 None:intergenic 45.0%
! TTTTGGACCCTGATCAGAAC+AGG + chr1_2:66797850-66797869 None:intergenic 45.0%
GCTATGTTGCTACATGCTGT+TGG - chr1_2:66797942-66797961 Msa0086180:intron 45.0%
TGTTGCTACATGCTGTTGGT+TGG - chr1_2:66797946-66797965 Msa0086180:intron 45.0%
!! TGCAGTGCTGAAAGTATCAC+TGG - chr1_2:66798568-66798587 Msa0086180:intron 45.0%
ACTTATCCAGAAAACTGGCG+AGG - chr1_2:66798691-66798710 Msa0086180:intron 45.0%
!! TGGTTGATTTGCCATGTCCT+TGG + chr1_2:66798807-66798826 None:intergenic 45.0%
TCAAGCAAGACAACGTGAGA+TGG - chr1_2:66799078-66799097 Msa0086180:intron 45.0%
! GGAACCCTTTTCAACCACTT+TGG + chr1_2:66799149-66799168 None:intergenic 45.0%
GGAAGGAATCTCAGAAGATG+TGG + chr1_2:66799170-66799189 None:intergenic 45.0%
!!! AATAATAATATTTAAAATTG+TGG + chr1_2:66793478-66793497 None:intergenic 5.0%
!!! TAAAAATTTAATTTTTTTTC+TGG + chr1_2:66795013-66795032 None:intergenic 5.0%
!! TAAAAATGAAAAATATAAAA+TGG - chr1_2:66795769-66795788 Msa0086180:intron 5.0%
!!! TAACATATATTTTTTTTTTT+GGG + chr1_2:66795804-66795823 None:intergenic 5.0%
!!! TTAACATATATTTTTTTTTT+TGG + chr1_2:66795805-66795824 None:intergenic 5.0%
!! TATGAAATAAATTAAATTAA+GGG + chr1_2:66796835-66796854 None:intergenic 5.0%
!! TTATGAAATAAATTAAATTA+AGG + chr1_2:66796836-66796855 None:intergenic 5.0%
!! TTTATTTCATAAATAATATT+AGG - chr1_2:66796844-66796863 Msa0086180:intron 5.0%
TTAAAACCAACGCACACCGG+TGG - chr1_2:66793362-66793381 Msa0086180:CDS 50.0%
TATTAACCACCGGTGTGCGT+TGG + chr1_2:66793371-66793390 None:intergenic 50.0%
! AGGGCTGATTCTAGTGCAAG+TGG + chr1_2:66794240-66794259 None:intergenic 50.0%
AGAATGACCTTCCTGGTGGT+CGG + chr1_2:66794672-66794691 None:intergenic 50.0%
TGCCACGTCACCTCTTTCAA+TGG + chr1_2:66795695-66795714 None:intergenic 50.0%
! CCGCCCCTGTAAGTCTATTT+TGG - chr1_2:66796472-66796491 Msa0086180:intron 50.0%
GAATGACAGCACAGAGCTCA+TGG - chr1_2:66796609-66796628 Msa0086180:intron 50.0%
!!! GGTGGCAGTTTTTGAAGCCA+CGG + chr1_2:66796695-66796714 None:intergenic 50.0%
TCTCCATTCAGGGACAGTGA+CGG - chr1_2:66796774-66796793 Msa0086180:intron 50.0%
!! GGACAGTGACGGATCTCTTT+GGG - chr1_2:66796785-66796804 Msa0086180:intron 50.0%
TTGGGAGCCCAAAGATGTGA+TGG - chr1_2:66796803-66796822 Msa0086180:intron 50.0%
TTGGTCAGTATCAGGTGTGG+TGG - chr1_2:66797252-66797271 Msa0086180:intron 50.0%
TGGTCAGTATCAGGTGTGGT+GGG - chr1_2:66797253-66797272 Msa0086180:intron 50.0%
AACAGAGAGGGGGCAAGAAA+AGG + chr1_2:66797825-66797844 None:intergenic 50.0%
! CTTGATCCTCGCCAGTTTTC+TGG + chr1_2:66798700-66798719 None:intergenic 50.0%
ACTGGCGAGGATCAAGTAGT+CGG - chr1_2:66798704-66798723 Msa0086180:intron 50.0%
CTCTTCTGCTACGGGCTTTA+TGG - chr1_2:66798730-66798749 Msa0086180:intron 50.0%
! TGATTTGCCATGTCCTTGGC+TGG + chr1_2:66798803-66798822 None:intergenic 50.0%
! AGGATAGGTGCTGCAGAACT+TGG + chr1_2:66798851-66798870 None:intergenic 50.0%
AAGTTCTGCAGCACCTATCC+TGG - chr1_2:66798850-66798869 Msa0086180:intron 50.0%
ACCTATCCTGGAAACTGGTG+AGG - chr1_2:66798862-66798881 Msa0086180:intron 50.0%
TCCTCACCAGTTTCCAGGAT+AGG + chr1_2:66798866-66798885 None:intergenic 50.0%
ACTGGTGAGGACCAAGTAGT+CGG - chr1_2:66798875-66798894 Msa0086180:intron 50.0%
GAATCCATAAAGCCTGCAGC+AGG + chr1_2:66798908-66798927 None:intergenic 50.0%
AGCTTCTTAGGACAGAGGAC+AGG - chr1_2:66799044-66799063 Msa0086180:intron 50.0%
GCTTCTTAGGACAGAGGACA+GGG - chr1_2:66799045-66799064 Msa0086180:intron 50.0%
TTAGGACAGAGGACAGGGTA+CGG - chr1_2:66799050-66799069 Msa0086180:intron 50.0%
AATGACCTTCCTGGTGGTCG+GGG + chr1_2:66794670-66794689 None:intergenic 55.0%
GAATGACCTTCCTGGTGGTC+GGG + chr1_2:66794671-66794690 None:intergenic 55.0%
TGCAGGGCGACAAATCAGCA+TGG - chr1_2:66795524-66795543 Msa0086180:intron 55.0%
! AGCATGGCTAACGGAGCACT+TGG - chr1_2:66795540-66795559 Msa0086180:intron 55.0%
! TGGCTAACGGAGCACTTGGA+CGG - chr1_2:66795544-66795563 Msa0086180:intron 55.0%
! TAACGGAGCACTTGGACGGA+GGG - chr1_2:66795548-66795567 Msa0086180:intron 55.0%
! GGACGGAGGGACCTTTTTGA+TGG - chr1_2:66795561-66795580 Msa0086180:intron 55.0%
TGGCCGAGCCGTGAAATTCA+TGG - chr1_2:66795639-66795658 Msa0086180:intron 55.0%
GTCAAAGCTTCATCTGGCCG+TGG - chr1_2:66796675-66796694 Msa0086180:intron 55.0%
GATCCGTCACTGTCCCTGAA+TGG + chr1_2:66796780-66796799 None:intergenic 55.0%
!! GGGACAGTGACGGATCTCTT+TGG - chr1_2:66796784-66796803 Msa0086180:intron 55.0%
!! GGGGGTGCCATCACATCTTT+GGG + chr1_2:66796813-66796832 None:intergenic 55.0%
GAGTGAGATCGAGGAGTGAG+AGG + chr1_2:66796951-66796970 None:intergenic 55.0%
CTCACTCCTCGATCTCACTC+AGG - chr1_2:66796951-66796970 Msa0086180:intron 55.0%
GGAATGCCTGAGTGAGATCG+AGG + chr1_2:66796960-66796979 None:intergenic 55.0%
! TCAGTATCAGGTGTGGTGGG+AGG - chr1_2:66797256-66797275 Msa0086180:intron 55.0%
! CAGTATCAGGTGTGGTGGGA+GGG - chr1_2:66797257-66797276 Msa0086180:intron 55.0%
! AGTATCAGGTGTGGTGGGAG+GGG - chr1_2:66797258-66797277 Msa0086180:intron 55.0%
AGTCGGTGGCTCTTCTGCTA+CGG - chr1_2:66798721-66798740 Msa0086180:intron 55.0%
TAGCTGGAACACTCCAGCCA+AGG - chr1_2:66798787-66798806 Msa0086180:intron 55.0%
GAACACTCCAGCCAAGGACA+TGG - chr1_2:66798793-66798812 Msa0086180:intron 55.0%
GCAGCACCTATCCTGGAAAC+TGG - chr1_2:66798857-66798876 Msa0086180:intron 55.0%
CTTGGTCCTCACCAGTTTCC+AGG + chr1_2:66798871-66798890 None:intergenic 55.0%
CATAAAGCCTGCAGCAGGAG+GGG + chr1_2:66798903-66798922 None:intergenic 55.0%
CCATAAAGCCTGCAGCAGGA+GGG + chr1_2:66798904-66798923 None:intergenic 55.0%
TCCATAAAGCCTGCAGCAGG+AGG + chr1_2:66798905-66798924 None:intergenic 55.0%
TAGGACAGAGGACAGGGTAC+GGG - chr1_2:66799051-66799070 Msa0086180:intron 55.0%
AGGTTTGAACCCCGACCACC+AGG - chr1_2:66794658-66794677 Msa0086180:intron 60.0%
TTGAACCCCGACCACCAGGA+AGG - chr1_2:66794662-66794681 Msa0086180:intron 60.0%
! CTAACGGAGCACTTGGACGG+AGG - chr1_2:66795547-66795566 Msa0086180:intron 60.0%
!! GGGGGGTGCCATCACATCTT+TGG + chr1_2:66796814-66796833 None:intergenic 60.0%
GGCGAGGATCAAGTAGTCGG+TGG - chr1_2:66798707-66798726 Msa0086180:intron 60.0%
GTCGGTGGCTCTTCTGCTAC+GGG - chr1_2:66798722-66798741 Msa0086180:intron 60.0%
CCCTCCTGCTGCAGGCTTTA+TGG - chr1_2:66798901-66798920 Msa0086180:intron 60.0%
!! CAGGAGGGGCACCGACTACT+TGG + chr1_2:66798889-66798908 None:intergenic 65.0%
! CAGGTGTGGTGGGAGGGGTG+AGG - chr1_2:66797263-66797282 Msa0086180:intron 70.0%
! GTCGGTGCCCCTCCTGCTGC+AGG - chr1_2:66798893-66798912 Msa0086180:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 66793181 66799195 66793181 ID=Msa0086180;Name=Msa0086180
chr1_2 mRNA 66793181 66799195 66793181 ID=Msa0086180-mRNA-1;Parent=Msa0086180;Name=Msa0086180-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0|0|0.66|0|0.33|3|0|195
chr1_2 exon 66799192 66799195 66799192 ID=Msa0086180-mRNA-1:exon:22585;Parent=Msa0086180-mRNA-1
chr1_2 exon 66793796 66793803 66793796 ID=Msa0086180-mRNA-1:exon:22584;Parent=Msa0086180-mRNA-1
chr1_2 exon 66793181 66793756 66793181 ID=Msa0086180-mRNA-1:exon:22583;Parent=Msa0086180-mRNA-1
chr1_2 CDS 66799192 66799195 66799192 ID=Msa0086180-mRNA-1:cds;Parent=Msa0086180-mRNA-1
chr1_2 CDS 66793796 66793803 66793796 ID=Msa0086180-mRNA-1:cds;Parent=Msa0086180-mRNA-1
chr1_2 CDS 66793181 66793756 66793181 ID=Msa0086180-mRNA-1:cds;Parent=Msa0086180-mRNA-1
Gene Sequence

>Msa0086180

ATGATGCTGAAACTGGAACACTTAGCCAAGAAAATGGCAAATCAACCAAATAATGAAAAGCAGCAAGCACCAAGTTCTGAAGCACTTATCCAGAAAACTGGCGAGGATCAAGTAGTCGGTGGCTCTTCTGCTACGGGCTTTATGGATTCATTGAAAAATCGGTATCAAAAAATCATAGATAGCTGGAACACTCCAGCCAAGGACATGGCAAATCAACCAAATAATGAAAAGCAACAAGCACCAAGTTCTGCAGCACCTATCCTGGAAACTGGTGAGGACCAAGTAGTCGGTGCCCCTCCTGCTGCAGGCTTTATGGATTCATTGGAAAATCGGTATAAAAAAATCAAAGAGCATGCAGAAACTTATCCTTATGTATGGGGTTCCTATATTCTTGTATATGGCGGATTTGGTCTTTGGTTTGCCTATAGATATAGAAAGCTTCTTAGGACAGAGGACAGGGTACGGGCACTTCAAGCAAGACAACGTGAGATGGTTGAAAAGGATAAGATTGTTGAAGCTGAAAATTCTAGTAATTCTGCCAAAGTGGTTGAAAAGGGTTCCACATCTTCTGAGATTCCTTCCAAGTAG

Protein sequence

>Msa0086180

MMLKLEHLAKKMANQPNNEKQQAPSSEALIQKTGEDQVVGGSSATGFMDSLKNRYQKIIDSWNTPAKDMANQPNNEKQQAPSSAAPILETGEDQVVGAPPAAGFMDSLENRYKKIKEHAETYPYVWGSYILVYGGFGLWFAYRYRKLLRTEDRVRALQARQREMVEKDKIVEAENSSNSAKVVEKGSTSSEIPSK*